-
Notifications
You must be signed in to change notification settings - Fork 5
/
1.4.2-pre-58353fd273.log
199 lines (196 loc) · 9.42 KB
/
1.4.2-pre-58353fd273.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
Julia Version 1.4.2-pre.13
Commit 58353fd273 (2020-05-10 17:03 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Reexport ──────────────────── v0.2.0
Installed TableTraits ───────────────── v1.0.0
Installed ArgCheck ──────────────────── v2.0.0
Installed ElasticArrays ─────────────── v1.2.0
Installed Parsers ───────────────────── v1.0.3
Installed OrderedCollections ────────── v1.2.0
Installed Tables ────────────────────── v1.0.4
Installed StanBase ──────────────────── v2.0.5
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed FilePathsBase ─────────────── v0.7.0
Installed DataAPI ───────────────────── v1.3.0
Installed Missings ──────────────────── v0.4.3
Installed Compat ────────────────────── v3.9.1
Installed DocStringExtensions ───────── v0.8.1
Installed StanDump ──────────────────── v0.2.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed CategoricalArrays ─────────── v0.7.7
Installed Parameters ────────────────── v0.12.1
Installed DataValueInterfaces ───────── v1.0.0
Installed PooledArrays ──────────────── v0.5.3
Installed UnPack ────────────────────── v1.0.0
Installed DataStructures ────────────── v0.17.15
Installed InvertedIndices ───────────── v1.0.0
Installed WeakRefStrings ────────────── v0.6.2
Installed Adapt ─────────────────────── v1.0.1
Installed StanSamples ───────────────── v0.1.0
Installed JSON ──────────────────────── v0.21.0
Installed Documenter ────────────────── v0.24.11
Installed DataFrames ────────────────── v0.20.2
Installed CSV ───────────────────────── v0.6.1
Updating `~/.julia/environments/v1.4/Project.toml`
[d0ee94f6] + StanBase v2.0.5
Updating `~/.julia/environments/v1.4/Manifest.toml`
[79e6a3ab] + Adapt v1.0.1
[dce04be8] + ArgCheck v2.0.0
[336ed68f] + CSV v0.6.1
[324d7699] + CategoricalArrays v0.7.7
[34da2185] + Compat v3.9.1
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.20.2
[864edb3b] + DataStructures v0.17.15
[e2d170a0] + DataValueInterfaces v1.0.0
[ffbed154] + DocStringExtensions v0.8.1
[e30172f5] + Documenter v0.24.11
[fdbdab4c] + ElasticArrays v1.2.0
[48062228] + FilePathsBase v0.7.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.2.0
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v1.0.3
[2dfb63ee] + PooledArrays v0.5.3
[189a3867] + Reexport v0.2.0
[a2af1166] + SortingAlgorithms v0.3.1
[d0ee94f6] + StanBase v2.0.5
[9713c8f3] + StanDump v0.2.0
[52d0d7a9] + StanSamples v0.1.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.4
[3a884ed6] + UnPack v1.0.0
[ea10d353] + WeakRefStrings v0.6.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing StanBase
Status `/tmp/jl_UmtoxW/Manifest.toml`
[79e6a3ab] Adapt v1.0.1
[dce04be8] ArgCheck v2.0.0
[336ed68f] CSV v0.6.1
[324d7699] CategoricalArrays v0.7.7
[34da2185] Compat v3.9.1
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.20.2
[864edb3b] DataStructures v0.17.15
[e2d170a0] DataValueInterfaces v1.0.0
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.11
[fdbdab4c] ElasticArrays v1.2.0
[48062228] FilePathsBase v0.7.0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[e1d29d7a] Missings v0.4.3
[bac558e1] OrderedCollections v1.2.0
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v1.0.3
[2dfb63ee] PooledArrays v0.5.3
[189a3867] Reexport v0.2.0
[a2af1166] SortingAlgorithms v0.3.1
[d0ee94f6] StanBase v2.0.5
[9713c8f3] StanDump v0.2.0
[52d0d7a9] StanSamples v0.1.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.4
[3a884ed6] UnPack v1.0.0
[ea10d353] WeakRefStrings v0.6.2
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/DeBcW/src/StanBase.jl:73
/tmp/jl_3w8wfJ/help.stan updated.
Basic HelpModel: Error During Test at /home/pkgeval/.julia/packages/StanBase/DeBcW/test/runtests.jl:20
Got exception outside of a @test
The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanBase.var"#1#2")() at /home/pkgeval/.julia/packages/StanBase/DeBcW/src/stanmodel/cmdstan_home.jl:15
[2] (::Base.var"#463#464"{StanBase.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanBase/DeBcW/src/stanmodel/cmdstan_home.jl:14 [inlined]
[6] HelpModel(::String, ::String, ::Array{Int64,1}; seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String, method::StanBase.Help, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/StanBase/DeBcW/src/stanmodel/HelpModel.jl:26
[7] HelpModel at /home/pkgeval/.julia/packages/StanBase/DeBcW/src/stanmodel/HelpModel.jl:20 [inlined] (repeats 2 times)
[8] top-level scope at /home/pkgeval/.julia/packages/StanBase/DeBcW/test/runtests.jl:22
[9] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Test/src/Test.jl:1113
[10] top-level scope at /home/pkgeval/.julia/packages/StanBase/DeBcW/test/runtests.jl:22
[11] include(::String) at ./client.jl:439
[12] top-level scope at none:6
[13] eval(::Module, ::Any) at ./boot.jl:331
[14] exec_options(::Base.JLOptions) at ./client.jl:264
[15] _start() at ./client.jl:484
Test Summary: | Error Total
Basic HelpModel | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/StanBase/DeBcW/test/runtests.jl:20
ERROR: Package StanBase errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1510
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:295
[11] top-level scope at none:16