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1.5.0-DEV-4085873ec6.log
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1.5.0-DEV-4085873ec6.log
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Julia Version 1.5.0-DEV.431
Commit 4085873ec6 (2020-03-10 23:48 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Blosc ────────────── v0.5.1
Installed CMakeWrapper ─────── v0.2.3
Installed Zlib_jll ─────────── v1.2.11+8
Installed Parameters ───────── v0.12.0
Installed FileIO ───────────── v1.2.3
Installed BinaryProvider ───── v0.5.8
Installed Colors ───────────── v0.9.5
Installed EMIRT ────────────── v0.7.0
Installed ColorTypes ───────── v0.7.5
Installed FixedPointNumbers ── v0.5.3
Installed Reexport ─────────── v0.2.0
Installed URIParser ────────── v0.4.0
Installed Compat ───────────── v2.2.0
Installed CMake ────────────── v1.2.0
Installed BinDeps ──────────── v1.0.0
Installed OrderedCollections ─ v1.1.0
Installed HDF5_jll ─────────── v1.10.5+5
Installed HDF5 ─────────────── v0.13.0
#=#=# ##O#- # ######################################################################## 100.0%
#=#=# ################ 22.5%########################################### 60.7%######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
8acf8dda + EMIRT v0.7.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
9e28174c + BinDeps v1.0.0
b99e7846 + BinaryProvider v0.5.8
a74b3585 + Blosc v0.5.1
631607c0 + CMake v1.2.0
d5fb7624 + CMakeWrapper v0.2.3
3da002f7 + ColorTypes v0.7.5
5ae59095 + Colors v0.9.5
34da2185 + Compat v2.2.0
8acf8dda + EMIRT v0.7.0
5789e2e9 + FileIO v1.2.3
53c48c17 + FixedPointNumbers v0.5.3
f67ccb44 + HDF5 v0.13.0
0234f1f7 + HDF5_jll v1.10.5+5
bac558e1 + OrderedCollections v1.1.0
d96e819e + Parameters v0.12.0
189a3867 + Reexport v0.2.0
30578b45 + URIParser v0.4.0
83775a58 + Zlib_jll v1.2.11+8
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
1a1011a3 + SharedArrays
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building CMake → `~/.julia/packages/CMake/ULbyn/deps/build.log`
Building Blosc → `~/.julia/packages/Blosc/lzFr0/deps/build.log`
Building HDF5 ─→ `~/.julia/packages/HDF5/XQlr9/deps/build.log`
Testing EMIRT
Status `/tmp/jl_4qSIVR/Project.toml`
5ae59095 Colors v0.9.5
8acf8dda EMIRT v0.7.0
5789e2e9 FileIO v1.2.3
53c48c17 FixedPointNumbers v0.5.3
f67ccb44 HDF5 v0.13.0
8ba89e20 Distributed
8dfed614 Test
Status `/tmp/jl_4qSIVR/Manifest.toml`
9e28174c BinDeps v1.0.0
b99e7846 BinaryProvider v0.5.8
a74b3585 Blosc v0.5.1
631607c0 CMake v1.2.0
d5fb7624 CMakeWrapper v0.2.3
3da002f7 ColorTypes v0.7.5
5ae59095 Colors v0.9.5
34da2185 Compat v2.2.0
8acf8dda EMIRT v0.7.0
5789e2e9 FileIO v1.2.3
53c48c17 FixedPointNumbers v0.5.3
f67ccb44 HDF5 v0.13.0
0234f1f7 HDF5_jll v1.10.5+5
bac558e1 OrderedCollections v1.1.0
d96e819e Parameters v0.12.0
189a3867 Reexport v0.2.0
30578b45 URIParser v0.4.0
83775a58 Zlib_jll v1.2.11+8
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
Test Summary: | Pass Total
test IO | 6 6
reading file: /home/pkgeval/.julia/packages/EMIRT/C3RK2/test/../assets/aff.h5 ......done :)
reading file: /home/pkgeval/.julia/packages/EMIRT/C3RK2/test/../assets/lbl.h5 ......done :)
judec = Dict{Symbol,Float32}(:VIFSs => 0.65209204,:ri => 0.9090551,:VIm => 0.013707907,:VIFS => 0.78002024,:rem => 0.00040634486,:VI => 0.2534153,:res => 0.09053859,:rfm => 0.99934644,:rf => 0.9318045,:VIS => -0.2534153,:VIFSm => 0.9703931,:re => 0.09094494,:rfs => 0.87281424,:ris => 0.2877325,:VIs => 0.23970748,:rim => 0.6213226)
0.008817 seconds (25.60 k allocations: 409.875 KiB)
ecd = Dict{Symbol,Float32}(:VIFSs => 1.0000002,:ri => 1.0,:VIm => 0.0,:VIFS => 1.0000002,:rem => 0.0,:VI => -1.7881393f-7,:res => 0.0,:rfm => 1.0,:rf => 1.0,:VIS => 1.7881393f-7,:VIFSm => 1.0000002,:re => 0.0,:rfs => 1.0,:ris => 0.28813884,:VIs => 0.0,:rim => 0.71186113)
0.532044 seconds (1.11 M allocations: 20.805 MiB)
ecd = Dict{Symbol,Float32}(:VIFSs => 0.045672007,:ri => 0.28817847,:VIm => 0.0,:VIFS => 0.08735364,:rem => 0.0,:VI => 9.672697,:res => 0.7118215,:rfm => 1.0,:rf => 0.00011138609,:VIS => -9.672697,:VIFSm => 0.99981064,:re => 0.7118215,:rfs => 5.569615f-5,:ris => 0.28813884,:VIs => 9.672756,:rim => 3.9647926f-5)
Test Summary: | Pass Total
test evaluate | 2 2
test segmentation downsampling
create random segmentation for tests
test creating fake mst ...
test relabel_seg ....
1.456050 seconds (180.41 k allocations: 138.937 MiB, 3.31% gc time)
test segid1N! ...
test modified serial version ...
6.365738 seconds (209.98 k allocations: 568.316 MiB, 4.88% gc time)
test modified serial version ...
5.854525 seconds (39 allocations: 558.002 MiB, 1.64% gc time)
test mask singletons ...
test removing singletons by masking ...
1.050251 seconds (17.09 M allocations: 327.346 MiB)
2.012452 seconds (17.05 M allocations: 325.323 MiB, 19.40% gc time)
Test Summary: | Pass Total
test segmentations | 2 2
transform affinitymap to edge list...
0.297011 seconds (2 allocations: 4.383 MiB)
0.328709 seconds (39 allocations: 16.385 MiB)
segment affinity map using connectivity analysis ...
0.055837 seconds (20 allocations: 6.032 MiB)
transform to uniform distribution ...
map to uniform distribution...get the permutation by sorting...... 0.535777 seconds (123.80 k allocations: 15.211 MiB)
done :)
done!
0.561862 seconds (123.86 k allocations: 36.213 MiB)
exchange x and z axis of affinity map...
exchange x and z of affinity map
0.069604 seconds (74.17 k allocations: 7.707 MiB)
Test Summary: |
test affinitymap | No tests
Testing EMIRT tests passed