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1.5.0-DEV-4085873ec6.log
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1.5.0-DEV-4085873ec6.log
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Julia Version 1.5.0-DEV.431
Commit 4085873ec6 (2020-03-10 23:48 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Reexport ──────────────────── v0.2.0
Installed TableTraits ───────────────── v1.0.0
Installed StanSamples ───────────────── v0.1.0
Installed Tables ────────────────────── v1.0.3
Installed CategoricalArrays ─────────── v0.7.7
Installed DataStructures ────────────── v0.17.10
Installed StanDiagnose ──────────────── v2.0.0
Installed StanBase ──────────────────── v2.0.3
Installed InvertedIndices ───────────── v1.0.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed DataAPI ───────────────────── v1.1.0
Installed ElasticArrays ─────────────── v1.0.0
Installed StanDump ──────────────────── v0.2.0
Installed Parsers ───────────────────── v0.3.12
Installed Compat ────────────────────── v3.8.0
Installed JSON ──────────────────────── v0.21.0
Installed OrderedCollections ────────── v1.1.0
Installed WeakRefStrings ────────────── v0.6.2
Installed ArgCheck ──────────────────── v2.0.0
Installed BinDeps ───────────────────── v1.0.0
Installed Parameters ────────────────── v0.12.0
Installed DocStringExtensions ───────── v0.8.1
Installed DataFrames ────────────────── v0.20.2
Installed FilePathsBase ─────────────── v0.7.0
Installed PooledArrays ──────────────── v0.5.3
Installed Missings ──────────────────── v0.4.3
Installed DataValueInterfaces ───────── v1.0.0
Installed URIParser ─────────────────── v0.4.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Documenter ────────────────── v0.24.5
Installed CSV ───────────────────────── v0.5.26
Updating `~/.julia/environments/v1.5/Project.toml`
fb13fc95 + StanDiagnose v2.0.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
dce04be8 + ArgCheck v2.0.0
9e28174c + BinDeps v1.0.0
336ed68f + CSV v0.5.26
324d7699 + CategoricalArrays v0.7.7
34da2185 + Compat v3.8.0
9a962f9c + DataAPI v1.1.0
a93c6f00 + DataFrames v0.20.2
864edb3b + DataStructures v0.17.10
e2d170a0 + DataValueInterfaces v1.0.0
ffbed154 + DocStringExtensions v0.8.1
e30172f5 + Documenter v0.24.5
fdbdab4c + ElasticArrays v1.0.0
48062228 + FilePathsBase v0.7.0
41ab1584 + InvertedIndices v1.0.0
82899510 + IteratorInterfaceExtensions v1.0.0
682c06a0 + JSON v0.21.0
e1d29d7a + Missings v0.4.3
bac558e1 + OrderedCollections v1.1.0
d96e819e + Parameters v0.12.0
69de0a69 + Parsers v0.3.12
2dfb63ee + PooledArrays v0.5.3
189a3867 + Reexport v0.2.0
a2af1166 + SortingAlgorithms v0.3.1
d0ee94f6 + StanBase v2.0.3
fb13fc95 + StanDiagnose v2.0.0
9713c8f3 + StanDump v0.2.0
52d0d7a9 + StanSamples v0.1.0
3783bdb8 + TableTraits v1.0.0
bd369af6 + Tables v1.0.3
30578b45 + URIParser v0.4.0
ea10d353 + WeakRefStrings v0.6.2
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
9fa8497b + Future
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
1a1011a3 + SharedArrays
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Testing StanDiagnose
Status `/tmp/jl_E61po5/Project.toml`
9e28174c BinDeps v1.0.0
336ed68f CSV v0.5.26
a93c6f00 DataFrames v0.20.2
ffbed154 DocStringExtensions v0.8.1
e30172f5 Documenter v0.24.5
d0ee94f6 StanBase v2.0.3
fb13fc95 StanDiagnose v2.0.0
8bb1440f DelimitedFiles
8ba89e20 Distributed
9a3f8284 Random
10745b16 Statistics
8dfed614 Test
4ec0a83e Unicode
Status `/tmp/jl_E61po5/Manifest.toml`
dce04be8 ArgCheck v2.0.0
9e28174c BinDeps v1.0.0
336ed68f CSV v0.5.26
324d7699 CategoricalArrays v0.7.7
34da2185 Compat v3.8.0
9a962f9c DataAPI v1.1.0
a93c6f00 DataFrames v0.20.2
864edb3b DataStructures v0.17.10
e2d170a0 DataValueInterfaces v1.0.0
ffbed154 DocStringExtensions v0.8.1
e30172f5 Documenter v0.24.5
fdbdab4c ElasticArrays v1.0.0
48062228 FilePathsBase v0.7.0
41ab1584 InvertedIndices v1.0.0
82899510 IteratorInterfaceExtensions v1.0.0
682c06a0 JSON v0.21.0
e1d29d7a Missings v0.4.3
bac558e1 OrderedCollections v1.1.0
d96e819e Parameters v0.12.0
69de0a69 Parsers v0.3.12
2dfb63ee PooledArrays v0.5.3
189a3867 Reexport v0.2.0
a2af1166 SortingAlgorithms v0.3.1
d0ee94f6 StanBase v2.0.3
fb13fc95 StanDiagnose v2.0.0
9713c8f3 StanDump v0.2.0
52d0d7a9 StanSamples v0.1.0
3783bdb8 TableTraits v1.0.0
bd369af6 Tables v1.0.3
30578b45 URIParser v0.4.0
ea10d353 WeakRefStrings v0.6.2
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
9fa8497b Future
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/t3M2h/src/StanBase.jl:73
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/t3M2h/src/StanBase.jl:73
/tmp/jl_7dxUtd/bernoulli.stan updated.
Bernoulli diagnose: Error During Test at /home/pkgeval/.julia/packages/StanDiagnose/EDKEs/test/runtests.jl:23
Got exception outside of a @test
The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanBase.var"#1#2")() at /home/pkgeval/.julia/packages/StanBase/t3M2h/src/stanmodel/cmdstan_home.jl:15
[2] (::Base.var"#477#478"{StanBase.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanBase/t3M2h/src/stanmodel/cmdstan_home.jl:14 [inlined]
[6] DiagnoseModel(::String, ::String, ::Array{Int64,1}; seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String, method::StanDiagnose.Diagnose) at /home/pkgeval/.julia/packages/StanDiagnose/EDKEs/src/stanmodel/DiagnoseModel.jl:54
[7] top-level scope at /home/pkgeval/.julia/packages/StanDiagnose/EDKEs/test/runtests.jl:25
[8] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[9] top-level scope at /home/pkgeval/.julia/packages/StanDiagnose/EDKEs/test/runtests.jl:25
[10] include(::String) at ./client.jl:441
[11] top-level scope at none:6
[12] eval(::Module, ::Any) at ./boot.jl:331
[13] exec_options(::Base.JLOptions) at ./client.jl:264
[14] _start() at ./client.jl:490
Test Summary: | Error Total
Bernoulli diagnose | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/StanDiagnose/EDKEs/test/runtests.jl:23
ERROR: Package StanDiagnose errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13