-
Notifications
You must be signed in to change notification settings - Fork 5
/
1.5.0-DEV-4085873ec6.log
213 lines (210 loc) · 10 KB
/
1.5.0-DEV-4085873ec6.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
Julia Version 1.5.0-DEV.431
Commit 4085873ec6 (2020-03-10 23:48 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Reexport ──────────────────── v0.2.0
Installed StanSamples ───────────────── v0.1.0
Installed TableTraits ───────────────── v1.0.0
Installed Tables ────────────────────── v1.0.3
Installed CategoricalArrays ─────────── v0.7.7
Installed DataStructures ────────────── v0.17.10
Installed StanOptimize ──────────────── v2.0.0
Installed StanBase ──────────────────── v2.0.3
Installed SortingAlgorithms ─────────── v0.3.1
Installed InvertedIndices ───────────── v1.0.0
Installed Compat ────────────────────── v3.8.0
Installed StanDump ──────────────────── v0.2.0
Installed ElasticArrays ─────────────── v1.0.0
Installed DataAPI ───────────────────── v1.1.0
Installed Parsers ───────────────────── v0.3.12
Installed JSON ──────────────────────── v0.21.0
Installed Parameters ────────────────── v0.12.0
Installed DataFrames ────────────────── v0.20.2
Installed WeakRefStrings ────────────── v0.6.2
Installed Missings ──────────────────── v0.4.3
Installed DataValueInterfaces ───────── v1.0.0
Installed ArgCheck ──────────────────── v2.0.0
Installed OrderedCollections ────────── v1.1.0
Installed FilePathsBase ─────────────── v0.7.0
Installed DocStringExtensions ───────── v0.8.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed PooledArrays ──────────────── v0.5.3
Installed CSV ───────────────────────── v0.5.26
Installed Documenter ────────────────── v0.24.5
Updating `~/.julia/environments/v1.5/Project.toml`
fbd8da12 + StanOptimize v2.0.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
dce04be8 + ArgCheck v2.0.0
336ed68f + CSV v0.5.26
324d7699 + CategoricalArrays v0.7.7
34da2185 + Compat v3.8.0
9a962f9c + DataAPI v1.1.0
a93c6f00 + DataFrames v0.20.2
864edb3b + DataStructures v0.17.10
e2d170a0 + DataValueInterfaces v1.0.0
ffbed154 + DocStringExtensions v0.8.1
e30172f5 + Documenter v0.24.5
fdbdab4c + ElasticArrays v1.0.0
48062228 + FilePathsBase v0.7.0
41ab1584 + InvertedIndices v1.0.0
82899510 + IteratorInterfaceExtensions v1.0.0
682c06a0 + JSON v0.21.0
e1d29d7a + Missings v0.4.3
bac558e1 + OrderedCollections v1.1.0
d96e819e + Parameters v0.12.0
69de0a69 + Parsers v0.3.12
2dfb63ee + PooledArrays v0.5.3
189a3867 + Reexport v0.2.0
a2af1166 + SortingAlgorithms v0.3.1
d0ee94f6 + StanBase v2.0.3
9713c8f3 + StanDump v0.2.0
fbd8da12 + StanOptimize v2.0.0
52d0d7a9 + StanSamples v0.1.0
3783bdb8 + TableTraits v1.0.0
bd369af6 + Tables v1.0.3
ea10d353 + WeakRefStrings v0.6.2
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
9fa8497b + Future
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
1a1011a3 + SharedArrays
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Testing StanOptimize
Status `/tmp/jl_jqcJXq/Project.toml`
336ed68f CSV v0.5.26
a93c6f00 DataFrames v0.20.2
ffbed154 DocStringExtensions v0.8.1
e30172f5 Documenter v0.24.5
d0ee94f6 StanBase v2.0.3
fbd8da12 StanOptimize v2.0.0
8bb1440f DelimitedFiles
8ba89e20 Distributed
9a3f8284 Random
10745b16 Statistics
8dfed614 Test
4ec0a83e Unicode
Status `/tmp/jl_jqcJXq/Manifest.toml`
dce04be8 ArgCheck v2.0.0
336ed68f CSV v0.5.26
324d7699 CategoricalArrays v0.7.7
34da2185 Compat v3.8.0
9a962f9c DataAPI v1.1.0
a93c6f00 DataFrames v0.20.2
864edb3b DataStructures v0.17.10
e2d170a0 DataValueInterfaces v1.0.0
ffbed154 DocStringExtensions v0.8.1
e30172f5 Documenter v0.24.5
fdbdab4c ElasticArrays v1.0.0
48062228 FilePathsBase v0.7.0
41ab1584 InvertedIndices v1.0.0
82899510 IteratorInterfaceExtensions v1.0.0
682c06a0 JSON v0.21.0
e1d29d7a Missings v0.4.3
bac558e1 OrderedCollections v1.1.0
d96e819e Parameters v0.12.0
69de0a69 Parsers v0.3.12
2dfb63ee PooledArrays v0.5.3
189a3867 Reexport v0.2.0
a2af1166 SortingAlgorithms v0.3.1
d0ee94f6 StanBase v2.0.3
9713c8f3 StanDump v0.2.0
fbd8da12 StanOptimize v2.0.0
52d0d7a9 StanSamples v0.1.0
3783bdb8 TableTraits v1.0.0
bd369af6 Tables v1.0.3
ea10d353 WeakRefStrings v0.6.2
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
9fa8497b Future
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/t3M2h/src/StanBase.jl:73
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/t3M2h/src/StanBase.jl:73
/tmp/jl_JnRF7C/bernoulli.stan updated.
Bernoulli optimize: Error During Test at /home/pkgeval/.julia/packages/StanOptimize/APhBH/test/runtests.jl:3
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanBase.var"#1#2")() at /home/pkgeval/.julia/packages/StanBase/t3M2h/src/stanmodel/cmdstan_home.jl:15
[2] (::Base.var"#477#478"{StanBase.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanBase/t3M2h/src/stanmodel/cmdstan_home.jl:14 [inlined]
[6] OptimizeModel(::String, ::String, ::Array{Int64,1}; method::StanOptimize.Optimize, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanOptimize/APhBH/src/stanmodel/OptimizeModel.jl:52
[7] top-level scope at /home/pkgeval/.julia/packages/StanOptimize/APhBH/examples/Bernoulli/bernoulli.jl:21
[8] include(::String) at ./client.jl:441
[9] top-level scope at /home/pkgeval/.julia/packages/StanOptimize/APhBH/test/runtests.jl:4
[10] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[11] top-level scope at /home/pkgeval/.julia/packages/StanOptimize/APhBH/test/runtests.jl:4
[12] include(::String) at ./client.jl:441
[13] top-level scope at none:6
[14] eval(::Module, ::Any) at ./boot.jl:331
[15] exec_options(::Base.JLOptions) at ./client.jl:264
[16] _start() at ./client.jl:490
in expression starting at /home/pkgeval/.julia/packages/StanOptimize/APhBH/examples/Bernoulli/bernoulli.jl:21
Test Summary: | Error Total
Bernoulli optimize | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/StanOptimize/APhBH/test/runtests.jl:3
ERROR: Package StanOptimize errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13