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1.5.0-DEV-4085873ec6.log
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Julia Version 1.5.0-DEV.431
Commit 4085873ec6 (2020-03-10 23:48 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed GenericLinearAlgebra ───────── v0.2.1
Installed StanSamples ────────────────── v0.1.0
Installed TableTraits ────────────────── v1.0.0
Installed SpecialFunctions ───────────── v0.10.0
Installed CategoricalArrays ──────────── v0.7.7
Installed StanBase ───────────────────── v2.0.3
Installed StanSample ─────────────────── v2.1.1
Installed FillArrays ─────────────────── v0.8.5
Installed Arpack ─────────────────────── v0.4.0
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed CompilerSupportLibraries_jll ─ v0.2.0+1
Installed Requires ───────────────────── v1.0.1
Installed Reexport ───────────────────── v0.2.0
Installed QuadGK ─────────────────────── v2.3.1
Installed SortingAlgorithms ──────────── v0.3.1
Installed InvertedIndices ────────────── v1.0.0
Installed Compat ─────────────────────── v3.8.0
Installed StatsFuns ──────────────────── v0.9.4
Installed StaticArrays ───────────────── v0.12.1
Installed Tables ─────────────────────── v1.0.3
Installed DataStructures ─────────────── v0.17.10
Installed JSON ───────────────────────── v0.21.0
Installed DataAPI ────────────────────── v1.1.0
Installed PDMats ─────────────────────── v0.9.11
Installed ElasticArrays ──────────────── v1.0.0
Installed Parsers ────────────────────── v0.3.12
Installed StanDump ───────────────────── v0.2.0
Installed MacroTools ─────────────────── v0.5.4
Installed WeakRefStrings ─────────────── v0.6.2
Installed DataFrames ─────────────────── v0.20.2
Installed Distributions ──────────────── v0.22.5
Installed Parameters ─────────────────── v0.12.0
Installed RecipesBase ────────────────── v0.7.0
Installed Arpack_jll ─────────────────── v3.5.0+2
Installed OpenBLAS_jll ───────────────── v0.3.7+7
Installed Missings ───────────────────── v0.4.3
Installed OrderedCollections ─────────── v1.1.0
Installed ArgCheck ───────────────────── v2.0.0
Installed FilePathsBase ──────────────── v0.7.0
Installed DocStringExtensions ────────── v0.8.1
Installed DataValueInterfaces ────────── v1.0.0
Installed PooledArrays ───────────────── v0.5.3
Installed IteratorInterfaceExtensions ── v1.0.0
Installed Rmath ──────────────────────── v0.6.1
Installed StatsBase ──────────────────── v0.32.2
Installed Documenter ─────────────────── v0.24.5
Installed MonteCarloMeasurements ─────── v0.8.3
Installed CSV ────────────────────────── v0.5.26
#=#=# ######################################################################## 100.0%
#=#=# ## 3.5%######## 11.7%################ 22.7%###################### 31.7%############################### 44.2%################################### 49.4%################################################### 71.8%###################################################################### 98.6%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# # 2.3%##### 7.2%######### 13.6%############## 20.2%##################### 29.6%############################# 41.0%###################################### 53.9%################################################## 70.7%########################################################### 82.6%######################################################################## 100.0%
#=#=# ####### 10.8%######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
c1514b29 + StanSample v2.1.1
Updating `~/.julia/environments/v1.5/Manifest.toml`
dce04be8 + ArgCheck v2.0.0
7d9fca2a + Arpack v0.4.0
68821587 + Arpack_jll v3.5.0+2
336ed68f + CSV v0.5.26
324d7699 + CategoricalArrays v0.7.7
34da2185 + Compat v3.8.0
e66e0078 + CompilerSupportLibraries_jll v0.2.0+1
9a962f9c + DataAPI v1.1.0
a93c6f00 + DataFrames v0.20.2
864edb3b + DataStructures v0.17.10
e2d170a0 + DataValueInterfaces v1.0.0
31c24e10 + Distributions v0.22.5
ffbed154 + DocStringExtensions v0.8.1
e30172f5 + Documenter v0.24.5
fdbdab4c + ElasticArrays v1.0.0
48062228 + FilePathsBase v0.7.0
1a297f60 + FillArrays v0.8.5
14197337 + GenericLinearAlgebra v0.2.1
41ab1584 + InvertedIndices v1.0.0
82899510 + IteratorInterfaceExtensions v1.0.0
682c06a0 + JSON v0.21.0
1914dd2f + MacroTools v0.5.4
e1d29d7a + Missings v0.4.3
0987c9cc + MonteCarloMeasurements v0.8.3
4536629a + OpenBLAS_jll v0.3.7+7
efe28fd5 + OpenSpecFun_jll v0.5.3+3
bac558e1 + OrderedCollections v1.1.0
90014a1f + PDMats v0.9.11
d96e819e + Parameters v0.12.0
69de0a69 + Parsers v0.3.12
2dfb63ee + PooledArrays v0.5.3
1fd47b50 + QuadGK v2.3.1
3cdcf5f2 + RecipesBase v0.7.0
189a3867 + Reexport v0.2.0
ae029012 + Requires v1.0.1
79098fc4 + Rmath v0.6.1
f50d1b31 + Rmath_jll v0.2.2+0
a2af1166 + SortingAlgorithms v0.3.1
276daf66 + SpecialFunctions v0.10.0
d0ee94f6 + StanBase v2.0.3
9713c8f3 + StanDump v0.2.0
c1514b29 + StanSample v2.1.1
52d0d7a9 + StanSamples v0.1.0
90137ffa + StaticArrays v0.12.1
2913bbd2 + StatsBase v0.32.2
4c63d2b9 + StatsFuns v0.9.4
3783bdb8 + TableTraits v1.0.0
bd369af6 + Tables v1.0.3
ea10d353 + WeakRefStrings v0.6.2
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
9fa8497b + Future
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
1a1011a3 + SharedArrays
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
4607b0f0 + SuiteSparse
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Testing StanSample
Status `/tmp/jl_cZPQP0/Project.toml`
336ed68f CSV v0.5.26
a93c6f00 DataFrames v0.20.2
ffbed154 DocStringExtensions v0.8.1
0987c9cc MonteCarloMeasurements v0.8.3
189a3867 Reexport v0.2.0
ae029012 Requires v1.0.1
d0ee94f6 StanBase v2.0.3
c1514b29 StanSample v2.1.1
8bb1440f DelimitedFiles
8ba89e20 Distributed
8dfed614 Test
4ec0a83e Unicode
Status `/tmp/jl_cZPQP0/Manifest.toml`
dce04be8 ArgCheck v2.0.0
7d9fca2a Arpack v0.4.0
68821587 Arpack_jll v3.5.0+2
336ed68f CSV v0.5.26
324d7699 CategoricalArrays v0.7.7
34da2185 Compat v3.8.0
e66e0078 CompilerSupportLibraries_jll v0.2.0+1
9a962f9c DataAPI v1.1.0
a93c6f00 DataFrames v0.20.2
864edb3b DataStructures v0.17.10
e2d170a0 DataValueInterfaces v1.0.0
31c24e10 Distributions v0.22.5
ffbed154 DocStringExtensions v0.8.1
e30172f5 Documenter v0.24.5
fdbdab4c ElasticArrays v1.0.0
48062228 FilePathsBase v0.7.0
1a297f60 FillArrays v0.8.5
14197337 GenericLinearAlgebra v0.2.1
41ab1584 InvertedIndices v1.0.0
82899510 IteratorInterfaceExtensions v1.0.0
682c06a0 JSON v0.21.0
1914dd2f MacroTools v0.5.4
e1d29d7a Missings v0.4.3
0987c9cc MonteCarloMeasurements v0.8.3
4536629a OpenBLAS_jll v0.3.7+7
efe28fd5 OpenSpecFun_jll v0.5.3+3
bac558e1 OrderedCollections v1.1.0
90014a1f PDMats v0.9.11
d96e819e Parameters v0.12.0
69de0a69 Parsers v0.3.12
2dfb63ee PooledArrays v0.5.3
1fd47b50 QuadGK v2.3.1
3cdcf5f2 RecipesBase v0.7.0
189a3867 Reexport v0.2.0
ae029012 Requires v1.0.1
79098fc4 Rmath v0.6.1
f50d1b31 Rmath_jll v0.2.2+0
a2af1166 SortingAlgorithms v0.3.1
276daf66 SpecialFunctions v0.10.0
d0ee94f6 StanBase v2.0.3
9713c8f3 StanDump v0.2.0
c1514b29 StanSample v2.1.1
52d0d7a9 StanSamples v0.1.0
90137ffa StaticArrays v0.12.1
2913bbd2 StatsBase v0.32.2
4c63d2b9 StatsFuns v0.9.4
3783bdb8 TableTraits v1.0.0
bd369af6 Tables v1.0.3
ea10d353 WeakRefStrings v0.6.2
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
9fa8497b Future
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
4607b0f0 SuiteSparse
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/t3M2h/src/StanBase.jl:73
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/t3M2h/src/StanBase.jl:73
/home/pkgeval/.julia/packages/StanSample/mKfWl/test/test_bernoulli/tmp/bernoulli.stan updated.
Bernoulli_01 array tests: Error During Test at /home/pkgeval/.julia/packages/StanSample/mKfWl/test/runtests.jl:11
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanBase.var"#1#2")() at /home/pkgeval/.julia/packages/StanBase/t3M2h/src/stanmodel/cmdstan_home.jl:15
[2] (::Base.var"#477#478"{StanBase.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanBase/t3M2h/src/stanmodel/cmdstan_home.jl:14 [inlined]
[6] SampleModel(::String, ::String, ::Array{Int64,1}; seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String, method::StanSample.Sample) at /home/pkgeval/.julia/packages/StanSample/mKfWl/src/stanmodel/SampleModel.jl:59
[7] top-level scope at /home/pkgeval/.julia/packages/StanSample/mKfWl/test/test_bernoulli/test_bernoulli_array_01.jl:24
[8] include(::String) at ./client.jl:441
[9] top-level scope at /home/pkgeval/.julia/packages/StanSample/mKfWl/test/runtests.jl:12
[10] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[11] top-level scope at /home/pkgeval/.julia/packages/StanSample/mKfWl/test/runtests.jl:12
[12] include(::String) at ./client.jl:441
[13] top-level scope at none:6
[14] eval(::Module, ::Any) at ./boot.jl:331
[15] exec_options(::Base.JLOptions) at ./client.jl:264
[16] _start() at ./client.jl:490
in expression starting at /home/pkgeval/.julia/packages/StanSample/mKfWl/test/test_bernoulli/test_bernoulli_array_01.jl:24
Test Summary: | Error Total
Bernoulli_01 array tests | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/StanSample/mKfWl/test/runtests.jl:11
ERROR: Package StanSample errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13