-
Notifications
You must be signed in to change notification settings - Fork 5
/
1.5.0-DEV-4085873ec6.log
390 lines (381 loc) · 19.6 KB
/
1.5.0-DEV-4085873ec6.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
Julia Version 1.5.0-DEV.431
Commit 4085873ec6 (2020-03-10 23:48 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed AxisAlgorithms ─────────────── v1.0.0
Installed PositiveFactorizations ─────── v0.2.3
Installed AbstractFFTs ───────────────── v0.5.0
Installed StanSamples ────────────────── v0.1.0
Installed CommonSubexpressions ───────── v0.2.0
Installed DiffRules ──────────────────── v1.0.1
Installed CategoricalArrays ──────────── v0.7.7
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed GenericLinearAlgebra ───────── v0.2.1
Installed TableTraits ────────────────── v1.0.0
Installed Arpack ─────────────────────── v0.4.0
Installed SpecialFunctions ───────────── v0.10.0
Installed FillArrays ─────────────────── v0.8.5
Installed StanBase ───────────────────── v2.0.3
Installed StatisticalRethinking ──────── v2.1.3
Installed CompilerSupportLibraries_jll ─ v0.2.0+1
Installed Requires ───────────────────── v1.0.1
Installed StaticArrays ───────────────── v0.12.1
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed Reexport ───────────────────── v0.2.0
Installed QuadGK ─────────────────────── v2.3.1
Installed MKL_jll ────────────────────── v2019.0.117+2
Installed SortingAlgorithms ──────────── v0.3.1
Installed InvertedIndices ────────────── v1.0.0
Installed WoodburyMatrices ───────────── v0.5.1
Installed Tables ─────────────────────── v1.0.3
Installed DataStructures ─────────────── v0.17.10
Installed StanOptimize ───────────────── v2.0.0
Installed Optim ──────────────────────── v0.20.3
Installed KernelDensity ──────────────── v0.5.1
Installed Ratios ─────────────────────── v0.4.0
Installed JSON ───────────────────────── v0.21.0
Installed DataAPI ────────────────────── v1.1.0
Installed Compat ─────────────────────── v3.8.0
Installed StatsFuns ──────────────────── v0.9.4
Installed MacroTools ─────────────────── v0.5.4
Installed OffsetArrays ───────────────── v1.0.3
Installed PDMats ─────────────────────── v0.9.11
Installed ElasticArrays ──────────────── v1.0.0
Installed StanDump ───────────────────── v0.2.0
Installed Parsers ────────────────────── v0.3.12
Installed Parameters ─────────────────── v0.12.0
Installed WeakRefStrings ─────────────── v0.6.2
Installed ArgCheck ───────────────────── v2.0.0
Installed RecipesBase ────────────────── v0.7.0
Installed OpenBLAS_jll ───────────────── v0.3.7+7
Installed OrderedCollections ─────────── v1.1.0
Installed FFTW ───────────────────────── v1.2.0
Installed Distributions ──────────────── v0.22.5
Installed DataFrames ─────────────────── v0.20.2
Installed Interpolations ─────────────── v0.12.5
Installed Arpack_jll ─────────────────── v3.5.0+2
Installed Missings ───────────────────── v0.4.3
Installed FFTW_jll ───────────────────── v3.3.9+4
Installed DataValueInterfaces ────────── v1.0.0
Installed PooledArrays ───────────────── v0.5.3
Installed FilePathsBase ──────────────── v0.7.0
Installed DocStringExtensions ────────── v0.8.1
Installed CSV ────────────────────────── v0.5.26
Installed FiniteDiff ─────────────────── v2.2.1
Installed ArrayInterface ─────────────── v2.5.1
Installed DiffResults ────────────────── v1.0.2
Installed StanSample ─────────────────── v2.1.1
Installed IntelOpenMP_jll ────────────── v2018.0.3+0
Installed NaNMath ────────────────────── v0.3.3
Installed IteratorInterfaceExtensions ── v1.0.0
Installed StatsBase ──────────────────── v0.32.2
Installed Documenter ─────────────────── v0.24.5
Installed ForwardDiff ────────────────── v0.10.9
Installed LineSearches ───────────────── v7.0.1
Installed Rmath ──────────────────────── v0.6.1
Installed NLSolversBase ──────────────── v7.6.1
Installed MonteCarloMeasurements ─────── v0.8.3
#=#=# ############### 21.1%######################################################################## 100.0%
#=#=# ## 3.0%###### 8.6%########### 16.3%################## 26.1%########################## 37.4%#################################### 51.4%################################################# 69.3%##################################################################### 96.0%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# 0.4%### 4.9%######## 12.4%################ 22.2%######################### 35.4%#################################### 50.3%################################################ 68.0%##################################################### 73.7%################################################################### 93.8%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# ############# 18.2%###################################### 53.1%####################################################################### 99.0%######################################################################## 100.0%
#=#=# ################################################# 69.0%######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
2d09df54 + StatisticalRethinking v2.1.3
Updating `~/.julia/environments/v1.5/Manifest.toml`
621f4979 + AbstractFFTs v0.5.0
dce04be8 + ArgCheck v2.0.0
7d9fca2a + Arpack v0.4.0
68821587 + Arpack_jll v3.5.0+2
4fba245c + ArrayInterface v2.5.1
13072b0f + AxisAlgorithms v1.0.0
336ed68f + CSV v0.5.26
324d7699 + CategoricalArrays v0.7.7
bbf7d656 + CommonSubexpressions v0.2.0
34da2185 + Compat v3.8.0
e66e0078 + CompilerSupportLibraries_jll v0.2.0+1
9a962f9c + DataAPI v1.1.0
a93c6f00 + DataFrames v0.20.2
864edb3b + DataStructures v0.17.10
e2d170a0 + DataValueInterfaces v1.0.0
163ba53b + DiffResults v1.0.2
b552c78f + DiffRules v1.0.1
31c24e10 + Distributions v0.22.5
ffbed154 + DocStringExtensions v0.8.1
e30172f5 + Documenter v0.24.5
fdbdab4c + ElasticArrays v1.0.0
7a1cc6ca + FFTW v1.2.0
f5851436 + FFTW_jll v3.3.9+4
48062228 + FilePathsBase v0.7.0
1a297f60 + FillArrays v0.8.5
6a86dc24 + FiniteDiff v2.2.1
f6369f11 + ForwardDiff v0.10.9
14197337 + GenericLinearAlgebra v0.2.1
1d5cc7b8 + IntelOpenMP_jll v2018.0.3+0
a98d9a8b + Interpolations v0.12.5
41ab1584 + InvertedIndices v1.0.0
82899510 + IteratorInterfaceExtensions v1.0.0
682c06a0 + JSON v0.21.0
5ab0869b + KernelDensity v0.5.1
d3d80556 + LineSearches v7.0.1
856f044c + MKL_jll v2019.0.117+2
1914dd2f + MacroTools v0.5.4
e1d29d7a + Missings v0.4.3
0987c9cc + MonteCarloMeasurements v0.8.3
d41bc354 + NLSolversBase v7.6.1
77ba4419 + NaNMath v0.3.3
6fe1bfb0 + OffsetArrays v1.0.3
4536629a + OpenBLAS_jll v0.3.7+7
efe28fd5 + OpenSpecFun_jll v0.5.3+3
429524aa + Optim v0.20.3
bac558e1 + OrderedCollections v1.1.0
90014a1f + PDMats v0.9.11
d96e819e + Parameters v0.12.0
69de0a69 + Parsers v0.3.12
2dfb63ee + PooledArrays v0.5.3
85a6dd25 + PositiveFactorizations v0.2.3
1fd47b50 + QuadGK v2.3.1
c84ed2f1 + Ratios v0.4.0
3cdcf5f2 + RecipesBase v0.7.0
189a3867 + Reexport v0.2.0
ae029012 + Requires v1.0.1
79098fc4 + Rmath v0.6.1
f50d1b31 + Rmath_jll v0.2.2+0
a2af1166 + SortingAlgorithms v0.3.1
276daf66 + SpecialFunctions v0.10.0
d0ee94f6 + StanBase v2.0.3
9713c8f3 + StanDump v0.2.0
fbd8da12 + StanOptimize v2.0.0
c1514b29 + StanSample v2.1.1
52d0d7a9 + StanSamples v0.1.0
90137ffa + StaticArrays v0.12.1
2d09df54 + StatisticalRethinking v2.1.3
2913bbd2 + StatsBase v0.32.2
4c63d2b9 + StatsFuns v0.9.4
3783bdb8 + TableTraits v1.0.0
bd369af6 + Tables v1.0.3
ea10d353 + WeakRefStrings v0.6.2
efce3f68 + WoodburyMatrices v0.5.1
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
9fa8497b + Future
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
1a1011a3 + SharedArrays
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
4607b0f0 + SuiteSparse
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building FFTW → `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Testing StatisticalRethinking
Status `/tmp/jl_S7KrVC/Project.toml`
336ed68f CSV v0.5.26
a93c6f00 DataFrames v0.20.2
31c24e10 Distributions v0.22.5
ffbed154 DocStringExtensions v0.8.1
5ab0869b KernelDensity v0.5.1
0987c9cc MonteCarloMeasurements v0.8.3
d96e819e Parameters v0.12.0
189a3867 Reexport v0.2.0
ae029012 Requires v1.0.1
fbd8da12 StanOptimize v2.0.0
c1514b29 StanSample v2.1.1
2d09df54 StatisticalRethinking v2.1.3
2913bbd2 StatsBase v0.32.2
9a3f8284 Random
10745b16 Statistics
8dfed614 Test
Status `/tmp/jl_S7KrVC/Manifest.toml`
621f4979 AbstractFFTs v0.5.0
dce04be8 ArgCheck v2.0.0
7d9fca2a Arpack v0.4.0
68821587 Arpack_jll v3.5.0+2
4fba245c ArrayInterface v2.5.1
13072b0f AxisAlgorithms v1.0.0
336ed68f CSV v0.5.26
324d7699 CategoricalArrays v0.7.7
bbf7d656 CommonSubexpressions v0.2.0
34da2185 Compat v3.8.0
e66e0078 CompilerSupportLibraries_jll v0.2.0+1
9a962f9c DataAPI v1.1.0
a93c6f00 DataFrames v0.20.2
864edb3b DataStructures v0.17.10
e2d170a0 DataValueInterfaces v1.0.0
163ba53b DiffResults v1.0.2
b552c78f DiffRules v1.0.1
31c24e10 Distributions v0.22.5
ffbed154 DocStringExtensions v0.8.1
e30172f5 Documenter v0.24.5
fdbdab4c ElasticArrays v1.0.0
7a1cc6ca FFTW v1.2.0
f5851436 FFTW_jll v3.3.9+4
48062228 FilePathsBase v0.7.0
1a297f60 FillArrays v0.8.5
6a86dc24 FiniteDiff v2.2.1
f6369f11 ForwardDiff v0.10.9
14197337 GenericLinearAlgebra v0.2.1
1d5cc7b8 IntelOpenMP_jll v2018.0.3+0
a98d9a8b Interpolations v0.12.5
41ab1584 InvertedIndices v1.0.0
82899510 IteratorInterfaceExtensions v1.0.0
682c06a0 JSON v0.21.0
5ab0869b KernelDensity v0.5.1
d3d80556 LineSearches v7.0.1
856f044c MKL_jll v2019.0.117+2
1914dd2f MacroTools v0.5.4
e1d29d7a Missings v0.4.3
0987c9cc MonteCarloMeasurements v0.8.3
d41bc354 NLSolversBase v7.6.1
77ba4419 NaNMath v0.3.3
6fe1bfb0 OffsetArrays v1.0.3
4536629a OpenBLAS_jll v0.3.7+7
efe28fd5 OpenSpecFun_jll v0.5.3+3
429524aa Optim v0.20.3
bac558e1 OrderedCollections v1.1.0
90014a1f PDMats v0.9.11
d96e819e Parameters v0.12.0
69de0a69 Parsers v0.3.12
2dfb63ee PooledArrays v0.5.3
85a6dd25 PositiveFactorizations v0.2.3
1fd47b50 QuadGK v2.3.1
c84ed2f1 Ratios v0.4.0
3cdcf5f2 RecipesBase v0.7.0
189a3867 Reexport v0.2.0
ae029012 Requires v1.0.1
79098fc4 Rmath v0.6.1
f50d1b31 Rmath_jll v0.2.2+0
a2af1166 SortingAlgorithms v0.3.1
276daf66 SpecialFunctions v0.10.0
d0ee94f6 StanBase v2.0.3
9713c8f3 StanDump v0.2.0
fbd8da12 StanOptimize v2.0.0
c1514b29 StanSample v2.1.1
52d0d7a9 StanSamples v0.1.0
90137ffa StaticArrays v0.12.1
2d09df54 StatisticalRethinking v2.1.3
2913bbd2 StatsBase v0.32.2
4c63d2b9 StatsFuns v0.9.4
3783bdb8 TableTraits v1.0.0
bd369af6 Tables v1.0.3
ea10d353 WeakRefStrings v0.6.2
efce3f68 WoodburyMatrices v0.5.1
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
9fa8497b Future
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
4607b0f0 SuiteSparse
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/t3M2h/src/StanBase.jl:73
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/t3M2h/src/StanBase.jl:73
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/t3M2h/src/StanBase.jl:73
/tmp/jl_2bWVg9/m1.1s.stan updated.
ERROR: LoadError: LoadError: LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanBase.var"#1#2")() at /home/pkgeval/.julia/packages/StanBase/t3M2h/src/stanmodel/cmdstan_home.jl:15
[2] (::Base.var"#477#478"{StanBase.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanBase/t3M2h/src/stanmodel/cmdstan_home.jl:14 [inlined]
[6] SampleModel(::String, ::String, ::Array{Int64,1}; seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String, method::StanSample.Sample) at /home/pkgeval/.julia/packages/StanSample/mKfWl/src/stanmodel/SampleModel.jl:59
[7] SampleModel at /home/pkgeval/.julia/packages/StanSample/mKfWl/src/stanmodel/SampleModel.jl:53 [inlined] (repeats 2 times)
[8] top-level scope at /home/pkgeval/.julia/packages/StatisticalRethinking/s7JTN/test/test_part_1.jl:30
[9] include(::String) at ./client.jl:441
[10] top-level scope at /home/pkgeval/.julia/packages/StatisticalRethinking/s7JTN/test/test_intro_scripts.jl:4
[11] include(::String) at ./client.jl:441
[12] top-level scope at /home/pkgeval/.julia/packages/StatisticalRethinking/s7JTN/test/runtests.jl:4
[13] include(::String) at ./client.jl:441
[14] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/StatisticalRethinking/s7JTN/test/test_part_1.jl:30
in expression starting at /home/pkgeval/.julia/packages/StatisticalRethinking/s7JTN/test/test_intro_scripts.jl:4
in expression starting at /home/pkgeval/.julia/packages/StatisticalRethinking/s7JTN/test/runtests.jl:4
ERROR: Package StatisticalRethinking errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13