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1.5.0-DEV-4085873ec6.log
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1.5.0-DEV-4085873ec6.log
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Julia Version 1.5.0-DEV.431
Commit 4085873ec6 (2020-03-10 23:48 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed XGBoost ──────── v0.4.2
Installed BinaryProvider ─ v0.5.8
Updating `~/.julia/environments/v1.5/Project.toml`
009559a3 + XGBoost v0.4.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
b99e7846 + BinaryProvider v0.5.8
009559a3 + XGBoost v0.4.2
2a0f44e3 + Base64
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
de0858da + Printf
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
8dfed614 + Test
4ec0a83e + Unicode
Building XGBoost → `~/.julia/packages/XGBoost/LXjD0/deps/build.log`
Testing XGBoost
Status `/tmp/jl_iPlRxf/Project.toml`
b99e7846 BinaryProvider v0.5.8
009559a3 XGBoost v0.4.2
8f399da3 Libdl
de0858da Printf
9a3f8284 Random
2f01184e SparseArrays
10745b16 Statistics
8dfed614 Test
Status `/tmp/jl_iPlRxf/Manifest.toml`
b99e7846 BinaryProvider v0.5.8
009559a3 XGBoost v0.4.2
2a0f44e3 Base64
8ba89e20 Distributed
b77e0a4c InteractiveUtils
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
de0858da Printf
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
8dfed614 Test
4ec0a83e Unicode
[00:26:07] 6513x126 matrix with 143286 entries loaded from ../data/agaricus.txt.train
[00:26:08] 6513x126 matrix with 143286 entries loaded from ../data/agaricus.txt.train
[00:26:08] 1611x126 matrix with 35442 entries loaded from ../data/agaricus.txt.test
[00:26:26] 6513x126 matrix with 143286 entries loaded from ../data/agaricus.txt.train
[00:26:26] 1611x126 matrix with 35442 entries loaded from ../data/agaricus.txt.test
[1] cv-test-error:0.046522+0.002437 cv-train-error:0.046522+0.001219
[2] cv-test-error:0.022263+0.000704 cv-train-error:0.022263+0.000352
[3] cv-test-error:0.010287+0.004705 cv-train-error:0.009520+0.004733
[4] cv-test-error:0.015200+0.000461 cv-train-error:0.015200+0.000231
[5] cv-test-error:0.005834+0.003135 cv-train-error:0.004760+0.003541
[00:28:14] 6513x126 matrix with 143286 entries loaded from ../data/agaricus.txt.train
[00:28:14] 1611x126 matrix with 35442 entries loaded from ../data/agaricus.txt.test
training xgboost with dense matrix
[1] train-error:0.046522
[2] train-error:0.022263
training xgboost with sparse matrix
[1] train-error:0.046522
[2] train-error:0.022263
training xgboost with DMatrix[1] train-error:0.000614
[2] train-error:0.000000
[00:29:45] 6513x126 matrix with 143286 entries loaded from ../data/agaricus.txt.train
[1] train-error:0.046522
[2] train-error:0.022263
test-error=0.48168839230291743
Example: Error During Test at /home/pkgeval/.julia/packages/XGBoost/LXjD0/test/runtests.jl:78
Got exception outside of a @test
LoadError: Call to XGBoost C function XGBoosterSaveModel failed: [00:30:01] /workspace/srcdir/xgboost/dmlc-core/src/io/local_filesys.cc:209: Check failed: allow_null LocalFileSystem::Open "xgb.model": Permission denied
Stack trace returned 10 entries:
[bt] (0) /home/pkgeval/.julia/packages/XGBoost/LXjD0/deps/usr/lib/libxgboost.so(dmlc::StackTrace[abi:cxx11](unsigned long)+0x7c) [0x7f8a2ec22fdc]
[bt] (1) /home/pkgeval/.julia/packages/XGBoost/LXjD0/deps/usr/lib/libxgboost.so(dmlc::io::LocalFileSystem::Open(dmlc::io::URI const&, char const*, bool)+0x5fd) [0x7f8a2ee372dd]
[bt] (2) /home/pkgeval/.julia/packages/XGBoost/LXjD0/deps/usr/lib/libxgboost.so(dmlc::Stream::Create(char const*, char const*, bool)+0x153) [0x7f8a2ee0dd53]
[bt] (3) /home/pkgeval/.julia/packages/XGBoost/LXjD0/deps/usr/lib/libxgboost.so(XGBoosterSaveModel+0x27) [0x7f8a2ec1fc27]
[bt] (4) [0x7f8a49029d19]
[bt] (5) [0x7f8a49029f3b]
[bt] (6) /opt/julia/bin/../lib/libjulia.so.1(jl_apply_generic+0x228) [0x7f8a5e500a78]
[bt] (7) /opt/julia/bin/../lib/libjulia.so.1(+0xcdd26) [0x7f8a5e519d26]
[bt] (8) /opt/julia/bin/../lib/libjulia.so.1(+0xcd970) [0x7f8a5e519970]
[bt] (9) /opt/julia/bin/../lib/libjulia.so.1(+0xcef24) [0x7f8a5e51af24]
Stacktrace:
[1] error(::String, ::String, ::String, ::String) at ./error.jl:42
[2] XGBoosterSaveModel(::Ptr{Nothing}, ::String) at /home/pkgeval/.julia/packages/XGBoost/LXjD0/src/xgboost_wrapper_h.jl:15
[3] save(::Booster, ::String) at /home/pkgeval/.julia/packages/XGBoost/LXjD0/src/xgboost_lib.jl:109
[4] top-level scope at /home/pkgeval/.julia/packages/XGBoost/LXjD0/test/example.jl:52
[5] include(::String) at ./client.jl:441
[6] top-level scope at /home/pkgeval/.julia/packages/XGBoost/LXjD0/test/runtests.jl:79
[7] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[8] top-level scope at /home/pkgeval/.julia/packages/XGBoost/LXjD0/test/runtests.jl:79
[9] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[10] top-level scope at /home/pkgeval/.julia/packages/XGBoost/LXjD0/test/runtests.jl:10
[11] include(::String) at ./client.jl:441
[12] top-level scope at none:6
[13] eval(::Module, ::Any) at ./boot.jl:331
[14] exec_options(::Base.JLOptions) at ./client.jl:264
[15] _start() at ./client.jl:490
in expression starting at /home/pkgeval/.julia/packages/XGBoost/LXjD0/test/example.jl:52
Test Summary: | Pass Error Total
XGBoost | 10 1 11
Sparse matrices | No tests
DMatrix loading | 2 2
Agaricus training | 3 3
Cross validation | No tests
Feature importance | 1 1
Example | 1 1
Rabit | 4 4
ERROR: LoadError: Some tests did not pass: 10 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/XGBoost/LXjD0/test/runtests.jl:8
ERROR: Package XGBoost errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13