1.6.0-DEV-03e1a89ff1.log

Julia Version 1.6.0-DEV.633
Commit 03e1a89ff1 (2020-08-13 14:37 UTC)
Platform Info:
  OS: Linux (x86_64-pc-linux-gnu)
  CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
  JULIA_DEPOT_PATH = ::/usr/local/share/julia
  JULIA_NUM_THREADS = 2

  Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
  Installed IntelOpenMP_jll ───── v2018.0.3+0
  Installed PDMats ────────────── v0.10.0
  Installed Rmath ─────────────── v0.6.1
  Installed AbstractFFTs ──────── v0.5.0
  Installed URIParser ─────────── v0.4.1
  Installed DataAPI ───────────── v1.3.0
  Installed Kpax3 ─────────────── v0.5.2
  Installed Rmath_jll ─────────── v0.2.2+1
  Installed JLD2 ──────────────── v0.1.14
  Installed WoodburyMatrices ──── v0.5.2
  Installed FillArrays ────────── v0.8.14
  Installed BinaryProvider ────── v0.5.10
  Installed StatsFuns ─────────── v0.9.5
  Installed Missings ──────────── v0.4.3
  Installed NearestNeighbors ──── v0.4.4
  Installed OrderedCollections ── v1.3.0
  Installed SpecialFunctions ──── v0.8.0
  Installed StaticArrays ──────── v0.12.4
  Installed DocStringExtensions ─ v0.8.2
  Installed Interpolations ────── v0.12.10
  Installed Clustering ────────── v0.14.1
  Installed Distances ─────────── v0.8.2
  Installed Reexport ──────────── v0.2.0
  Installed QuadGK ────────────── v2.4.0
  Installed StatsBase ─────────── v0.33.0
  Installed CodecZlib ─────────── v0.7.0
  Installed MKL_jll ───────────── v2020.1.216+0
  Installed Zlib_jll ──────────── v1.2.11+15
  Installed FFTW_jll ──────────── v3.3.9+5
  Installed FileIO ────────────── v1.4.1
  Installed KernelDensity ─────── v0.6.0
  Installed Ratios ────────────── v0.4.0
  Installed Distributions ─────── v0.23.8
  Installed TranscodingStreams ── v0.9.5
  Installed AxisAlgorithms ────── v1.0.0
  Installed BinDeps ───────────── v1.0.1
  Installed OffsetArrays ──────── v1.1.2
  Installed SortingAlgorithms ─── v0.3.1
  Installed DataStructures ────── v0.17.20
  Installed RecipesBase ───────── v1.0.2
  Installed FFTW ──────────────── v1.2.2
Updating `~/.julia/environments/v1.6/Project.toml`
  [ad72c4b6] + Kpax3 v0.5.2
Updating `~/.julia/environments/v1.6/Manifest.toml`
  [621f4979] + AbstractFFTs v0.5.0
  [13072b0f] + AxisAlgorithms v1.0.0
  [9e28174c] + BinDeps v1.0.1
  [b99e7846] + BinaryProvider v0.5.10
  [aaaa29a8] + Clustering v0.14.1
  [944b1d66] + CodecZlib v0.7.0
  [9a962f9c] + DataAPI v1.3.0
  [864edb3b] + DataStructures v0.17.20
  [b4f34e82] + Distances v0.8.2
  [31c24e10] + Distributions v0.23.8
  [ffbed154] + DocStringExtensions v0.8.2
  [7a1cc6ca] + FFTW v1.2.2
  [f5851436] + FFTW_jll v3.3.9+5
  [5789e2e9] + FileIO v1.4.1
  [1a297f60] + FillArrays v0.8.14
  [1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
  [a98d9a8b] + Interpolations v0.12.10
  [033835bb] + JLD2 v0.1.14
  [5ab0869b] + KernelDensity v0.6.0
  [ad72c4b6] + Kpax3 v0.5.2
  [856f044c] + MKL_jll v2020.1.216+0
  [e1d29d7a] + Missings v0.4.3
  [b8a86587] + NearestNeighbors v0.4.4
  [6fe1bfb0] + OffsetArrays v1.1.2
  [bac558e1] + OrderedCollections v1.3.0
  [90014a1f] + PDMats v0.10.0
  [1fd47b50] + QuadGK v2.4.0
  [c84ed2f1] + Ratios v0.4.0
  [3cdcf5f2] + RecipesBase v1.0.2
  [189a3867] + Reexport v0.2.0
  [79098fc4] + Rmath v0.6.1
  [f50d1b31] + Rmath_jll v0.2.2+1
  [a2af1166] + SortingAlgorithms v0.3.1
  [276daf66] + SpecialFunctions v0.8.0
  [90137ffa] + StaticArrays v0.12.4
  [2913bbd2] + StatsBase v0.33.0
  [4c63d2b9] + StatsFuns v0.9.5
  [3bb67fe8] + TranscodingStreams v0.9.5
  [30578b45] + URIParser v0.4.1
  [efce3f68] + WoodburyMatrices v0.5.2
  [83775a58] + Zlib_jll v1.2.11+15
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8bb1440f] + DelimitedFiles
  [8ba89e20] + Distributed
  [b77e0a4c] + InteractiveUtils
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [44cfe95a] + Pkg
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA
  [9e88b42a] + Serialization
  [1a1011a3] + SharedArrays
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays
  [10745b16] + Statistics
  [4607b0f0] + SuiteSparse
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
   Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
   Building FFTW ────────────→ `~/.julia/packages/FFTW/kcXL6/deps/build.log`
    Testing Kpax3
Status `/tmp/jl_uw3J0N/Project.toml`
  [aaaa29a8] Clustering v0.14.1
  [b4f34e82] Distances v0.8.2
  [5789e2e9] FileIO v1.4.1
  [033835bb] JLD2 v0.1.14
  [5ab0869b] KernelDensity v0.6.0
  [ad72c4b6] Kpax3 v0.5.2
  [91a5bcdd] Plots v1.5.8
  [3cdcf5f2] RecipesBase v1.0.2
  [276daf66] SpecialFunctions v0.8.0
  [2913bbd2] StatsBase v0.33.0
  [8bb1440f] DelimitedFiles
  [de0858da] Printf
  [9a3f8284] Random
  [10745b16] Statistics
  [8dfed614] Test
Status `/tmp/jl_uw3J0N/Manifest.toml`
  [621f4979] AbstractFFTs v0.5.0
  [79e6a3ab] Adapt v2.0.2
  [13072b0f] AxisAlgorithms v1.0.0
  [9e28174c] BinDeps v1.0.1
  [b99e7846] BinaryProvider v0.5.10
  [6e34b625] Bzip2_jll v1.0.6+3
  [aaaa29a8] Clustering v0.14.1
  [944b1d66] CodecZlib v0.7.0
  [35d6a980] ColorSchemes v3.9.0
  [3da002f7] ColorTypes v0.10.8
  [5ae59095] Colors v0.12.3
  [d38c429a] Contour v0.5.4
  [9a962f9c] DataAPI v1.3.0
  [864edb3b] DataStructures v0.17.20
  [e2d170a0] DataValueInterfaces v1.0.0
  [b4f34e82] Distances v0.8.2
  [31c24e10] Distributions v0.23.8
  [ffbed154] DocStringExtensions v0.8.2
  [c87230d0] FFMPEG v0.3.0
  [b22a6f82] FFMPEG_jll v4.3.1+1
  [7a1cc6ca] FFTW v1.2.2
  [f5851436] FFTW_jll v3.3.9+5
  [5789e2e9] FileIO v1.4.1
  [1a297f60] FillArrays v0.8.14
  [53c48c17] FixedPointNumbers v0.8.4
  [d7e528f0] FreeType2_jll v2.10.1+3
  [559328eb] FriBidi_jll v1.0.5+4
  [28b8d3ca] GR v0.51.0
  [5c1252a2] GeometryBasics v0.2.15
  [4d00f742] GeometryTypes v0.8.3
  [cd3eb016] HTTP v0.8.17
  [83e8ac13] IniFile v0.5.0
  [1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
  [a98d9a8b] Interpolations v0.12.10
  [c8e1da08] IterTools v1.3.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [033835bb] JLD2 v0.1.14
  [682c06a0] JSON v0.21.0
  [5ab0869b] KernelDensity v0.6.0
  [ad72c4b6] Kpax3 v0.5.2
  [c1c5ebd0] LAME_jll v3.100.0+2
  [dd192d2f] LibVPX_jll v1.9.0+0
  [856f044c] MKL_jll v2020.1.216+0
  [739be429] MbedTLS v1.0.2
  [c8ffd9c3] MbedTLS_jll v2.16.6+1
  [442fdcdd] Measures v0.3.1
  [e1d29d7a] Missings v0.4.3
  [77ba4419] NaNMath v0.3.4
  [b8a86587] NearestNeighbors v0.4.4
  [6fe1bfb0] OffsetArrays v1.1.2
  [e7412a2a] Ogg_jll v1.3.4+1
  [458c3c95] OpenSSL_jll v1.1.1+5
  [91d4177d] Opus_jll v1.3.1+2
  [bac558e1] OrderedCollections v1.3.0
  [90014a1f] PDMats v0.10.0
  [69de0a69] Parsers v1.0.10
  [ccf2f8ad] PlotThemes v2.0.0
  [995b91a9] PlotUtils v1.0.5
  [91a5bcdd] Plots v1.5.8
  [1fd47b50] QuadGK v2.4.0
  [c84ed2f1] Ratios v0.4.0
  [3cdcf5f2] RecipesBase v1.0.2
  [01d81517] RecipesPipeline v0.1.11
  [189a3867] Reexport v0.2.0
  [ae029012] Requires v1.0.1
  [79098fc4] Rmath v0.6.1
  [f50d1b31] Rmath_jll v0.2.2+1
  [992d4aef] Showoff v0.3.1
  [a2af1166] SortingAlgorithms v0.3.1
  [276daf66] SpecialFunctions v0.8.0
  [90137ffa] StaticArrays v0.12.4
  [2913bbd2] StatsBase v0.33.0
  [4c63d2b9] StatsFuns v0.9.5
  [09ab397b] StructArrays v0.4.4
  [3783bdb8] TableTraits v1.0.0
  [bd369af6] Tables v1.0.5
  [3bb67fe8] TranscodingStreams v0.9.5
  [30578b45] URIParser v0.4.1
  [efce3f68] WoodburyMatrices v0.5.2
  [83775a58] Zlib_jll v1.2.11+15
  [0ac62f75] libass_jll v0.14.0+3
  [f638f0a6] libfdk_aac_jll v0.1.6+3
  [f27f6e37] libvorbis_jll v1.3.6+5
  [1270edf5] x264_jll v2020.7.14+1
  [dfaa095f] x265_jll v3.0.0+2
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8bb1440f] DelimitedFiles
  [8ba89e20] Distributed
  [b77e0a4c] InteractiveUtils
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [44cfe95a] Pkg
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA
  [9e88b42a] Serialization
  [1a1011a3] SharedArrays
  [6462fe0b] Sockets
  [2f01184e] SparseArrays
  [10745b16] Statistics
  [4607b0f0] SuiteSparse
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
Going through tests in 'data_processing/fasta_data_processing.jl'... PASSED!
Going through tests in 'data_processing/csv_data_processing.jl'... PASSED!
Going through tests in 'distances/simovici_jaroszewicz.jl'... PASSED!
Going through tests in 'distances/jaccard.jl'... PASSED!
Going through tests in 'misc/basic_functions.jl'... PASSED!
Going through tests in 'misc/partition_functions.jl'... PASSED!
Going through tests in 'types/settings.jl'... ┌ Warning: `values(wv::AbstractWeights)` is deprecated, use `convert(Vector, wv)` instead.
│   caller = test_settings_constructor() at settings.jl:82
└ @ Main ~/.julia/packages/Kpax3/P8vrG/test/types/settings.jl:82
PASSED!
Going through tests in 'types/data.jl'... PASSED!
Going through tests in 'types/prior_col.jl'... PASSED!
Going through tests in 'types/prior_row.jl'... PASSED!
Going through tests in 'types/state.jl'... PASSED!
Going through tests in 'types/state_list.jl'... PASSED!
Going through tests in 'types/support.jl'... PASSED!
Going through tests in 'model/likelihoods.jl'... PASSED!
Going through tests in 'model/partition_cols.jl'... PASSED!
Going through tests in 'model/partition_rows.jl'... PASSED!
Going through tests in 'model/loss_binder.jl'... PASSED!
Going through tests in 'optimizer/local_mode.jl'... PASSED!
Going through tests in 'optimizer/selection.jl'... PASSED!
Going through tests in 'optimizer/crossover.jl'... PASSED!
Going through tests in 'optimizer/mutation.jl'... PASSED!
Going through tests in 'mcmc/partition_ratios.jl'... PASSED!
Going through tests in 'mcmc/log_likelihoods.jl'... PASSED!
Going through tests in 'mcmc/weight.jl'... PASSED!
Going through tests in 'mcmc/merge.jl'... PASSED!
Going through tests in 'mcmc/split.jl'... PASSED!
Going through tests in 'mcmc/gibbs.jl'... PASSED!
Going through tests in 'mcmc/biased_random_walk.jl'... PASSED!
Going through tests in 'mcmc/posterior.jl'... PASSED!
Going through tests in 'mcmc/diagnostics.jl'... PASSED!
Going through tests in 'estimate/write.jl'... PASSED!
Going through tests in 'plots/plots.jl'... ┌ Warning: Attribute alias `ylabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotK). To ensure expected behavior it is recommended to use the default attribute `yguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `xlabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotK). To ensure expected behavior it is recommended to use the default attribute `xguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `ylabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotC). To ensure expected behavior it is recommended to use the default attribute `yguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `xlabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotC). To ensure expected behavior it is recommended to use the default attribute `xguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `ylabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotD). To ensure expected behavior it is recommended to use the default attribute `yguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `xlabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotD). To ensure expected behavior it is recommended to use the default attribute `xguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `ylabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotP). To ensure expected behavior it is recommended to use the default attribute `yguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `xlabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotP). To ensure expected behavior it is recommended to use the default attribute `xguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `ylabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotTrace). To ensure expected behavior it is recommended to use the default attribute `yguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `xlabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotTrace). To ensure expected behavior it is recommended to use the default attribute `xguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `ylabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotTrace). To ensure expected behavior it is recommended to use the default attribute `yguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `xlabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotTrace). To ensure expected behavior it is recommended to use the default attribute `xguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `ylabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotDensity). To ensure expected behavior it is recommended to use the default attribute `yguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `xlabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotDensity). To ensure expected behavior it is recommended to use the default attribute `xguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `ylabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotDensity). To ensure expected behavior it is recommended to use the default attribute `yguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `xlabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotDensity). To ensure expected behavior it is recommended to use the default attribute `xguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `ylabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotJump). To ensure expected behavior it is recommended to use the default attribute `yguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `xlabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotJump). To ensure expected behavior it is recommended to use the default attribute `xguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `ylabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotJump). To ensure expected behavior it is recommended to use the default attribute `yguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
┌ Warning: Attribute alias `xlabel` detected in the user recipe defined for the signature (::Kpax3.Kpax3PlotJump). To ensure expected behavior it is recommended to use the default attribute `xguide`.
└ @ Plots ~/.julia/packages/Plots/ViMfq/src/pipeline.jl:15
PASSED!
    Testing Kpax3 tests passed