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1.6.0-DEV-03e1a89ff1.log
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1.6.0-DEV-03e1a89ff1.log
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Julia Version 1.6.0-DEV.633
Commit 03e1a89ff1 (2020-08-13 14:37 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
Installed Xorg_libXau_jll ────────────── v1.0.9+2
Installed Libmount_jll ───────────────── v2.34.0+1
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed PDMats ─────────────────────── v0.9.12
Installed Rmath ──────────────────────── v0.6.1
Installed CommonSubexpressions ───────── v0.3.0
Installed Mamba ──────────────────────── v0.12.4
Installed Optim ──────────────────────── v0.22.0
Installed Libgcrypt_jll ──────────────── v1.8.5+1
Installed IntelOpenMP_jll ────────────── v2018.0.3+0
Installed NLSolversBase ──────────────── v7.6.3
Installed AbstractFFTs ───────────────── v0.5.0
Installed DataAPI ────────────────────── v1.3.0
Installed Parsers ────────────────────── v1.0.10
Installed ForwardDiff ────────────────── v0.10.12
Installed OpenBLAS_jll ───────────────── v0.3.9+5
Installed Libffi_jll ─────────────────── v3.2.1+1
Installed Graphite2_jll ──────────────── v1.3.13+1
Installed UnPack ─────────────────────── v1.0.1
Installed FillArrays ─────────────────── v0.8.14
Installed Cairo ──────────────────────── v1.0.5
Installed Contour ────────────────────── v0.5.4
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed FriBidi_jll ────────────────── v1.0.5+4
Installed Libuuid_jll ────────────────── v2.34.0+4
Installed Pixman_jll ─────────────────── v0.38.4+2
Installed WoodburyMatrices ───────────── v0.5.2
Installed CoupledFields ──────────────── v0.2.0
Installed Interpolations ─────────────── v0.12.10
Installed Xorg_libXext_jll ───────────── v1.3.4+2
Installed Bzip2_jll ──────────────────── v1.0.6+3
Installed NaNMath ────────────────────── v0.3.4
Installed FixedPointNumbers ──────────── v0.8.4
Installed OrderedCollections ─────────── v1.3.0
Installed Inflate ────────────────────── v0.1.2
Installed StatsFuns ──────────────────── v0.9.5
Installed CategoricalArrays ──────────── v0.8.1
Installed ColorTypes ─────────────────── v0.10.8
Installed FreeType2_jll ──────────────── v2.10.1+3
Installed Libgpg_error_jll ───────────── v1.36.0+1
Installed PCRE_jll ───────────────────── v8.42.0+2
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed DiffRules ──────────────────── v1.0.1
Installed SpecialFunctions ───────────── v0.10.3
Installed Colors ─────────────────────── v0.12.3
Installed LightGraphs ────────────────── v1.3.3
Installed Loess ──────────────────────── v0.5.0
Installed Xorg_libxcb_jll ────────────── v1.13.0+2
Installed HarfBuzz_jll ───────────────── v2.6.1+5
Installed IterTools ──────────────────── v1.3.0
Installed ArnoldiMethod ──────────────── v0.0.4
Installed LineSearches ───────────────── v7.0.1
Installed Compose ────────────────────── v0.8.2
Installed DocStringExtensions ────────── v0.8.2
Installed Gadfly ─────────────────────── v1.3.0
Installed Xorg_xtrans_jll ────────────── v1.4.0+1
Installed Glib_jll ───────────────────── v2.59.0+2
Installed Requires ───────────────────── v1.0.1
Installed Fontconfig_jll ─────────────── v2.13.1+12
Installed Missings ───────────────────── v0.4.3
Installed Measures ───────────────────── v0.3.1
Installed FiniteDiff ─────────────────── v2.5.2
Installed StaticArrays ───────────────── v0.12.4
Installed Reexport ───────────────────── v0.2.0
Installed XML2_jll ───────────────────── v2.9.10+1
Installed Showoff ────────────────────── v0.3.1
Installed Graphics ───────────────────── v1.0.2
Installed LZO_jll ────────────────────── v2.10.0+1
Installed Pango_jll ──────────────────── v1.42.4+8
Installed Cairo_jll ──────────────────── v1.16.0+4
Installed MKL_jll ────────────────────── v2020.1.216+0
Installed ArrayInterface ─────────────── v2.11.0
Installed Gettext_jll ────────────────── v0.20.1+4
Installed Compat ─────────────────────── v3.13.0
Installed Distances ──────────────────── v0.9.0
Installed IndirectArrays ─────────────── v0.5.1
Installed Hexagons ───────────────────── v0.2.0
Installed Calculus ───────────────────── v0.5.1
Installed Media ──────────────────────── v0.5.0
Installed QuadGK ─────────────────────── v2.4.0
Installed DiffResults ────────────────── v1.0.2
Installed Juno ───────────────────────── v0.8.3
Installed JSON ───────────────────────── v0.21.0
Installed Xorg_libXdmcp_jll ──────────── v1.1.3+2
Installed Xorg_libpthread_stubs_jll ──── v0.1.0+1
Installed Xorg_libXrender_jll ────────── v0.9.10+2
Installed Arpack ─────────────────────── v0.4.0
Installed KernelDensity ──────────────── v0.5.1
Installed Ratios ─────────────────────── v0.4.0
Installed MacroTools ─────────────────── v0.5.5
Installed Distributions ──────────────── v0.23.4
Installed FFTW_jll ───────────────────── v3.3.9+5
Installed Zlib_jll ───────────────────── v1.2.11+15
Installed Xorg_libX11_jll ────────────── v1.6.9+2
Installed Expat_jll ──────────────────── v2.2.7+3
Installed StatsBase ──────────────────── v0.33.0
Installed SimpleTraits ───────────────── v0.9.2
Installed OffsetArrays ───────────────── v1.1.2
Installed Libiconv_jll ───────────────── v1.16.0+5
Installed SortingAlgorithms ──────────── v0.3.1
Installed XSLT_jll ───────────────────── v1.1.33+2
Installed libpng_jll ─────────────────── v1.6.37+3
Installed FFTW ───────────────────────── v1.2.2
Installed DataStructures ─────────────── v0.17.20
Installed Parameters ─────────────────── v0.12.1
Installed PositiveFactorizations ─────── v0.2.3
Installed AxisAlgorithms ─────────────── v1.0.0
Updating `~/.julia/environments/v1.6/Project.toml`
[5424a776] + Mamba v0.12.4
Updating `~/.julia/environments/v1.6/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[4fba245c] + ArrayInterface v2.11.0
[13072b0f] + AxisAlgorithms v1.0.0
[6e34b625] + Bzip2_jll v1.0.6+3
[159f3aea] + Cairo v1.0.5
[83423d85] + Cairo_jll v1.16.0+4
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.8.1
[3da002f7] + ColorTypes v0.10.8
[5ae59095] + Colors v0.12.3
[bbf7d656] + CommonSubexpressions v0.3.0
[34da2185] + Compat v3.13.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[a81c6b42] + Compose v0.8.2
[d38c429a] + Contour v0.5.4
[7ad07ef1] + CoupledFields v0.2.0
[9a962f9c] + DataAPI v1.3.0
[864edb3b] + DataStructures v0.17.20
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[b4f34e82] + Distances v0.9.0
[31c24e10] + Distributions v0.23.4
[ffbed154] + DocStringExtensions v0.8.2
[2e619515] + Expat_jll v2.2.7+3
[7a1cc6ca] + FFTW v1.2.2
[f5851436] + FFTW_jll v3.3.9+5
[1a297f60] + FillArrays v0.8.14
[6a86dc24] + FiniteDiff v2.5.2
[53c48c17] + FixedPointNumbers v0.8.4
[a3f928ae] + Fontconfig_jll v2.13.1+12
[f6369f11] + ForwardDiff v0.10.12
[d7e528f0] + FreeType2_jll v2.10.1+3
[559328eb] + FriBidi_jll v1.0.5+4
[c91e804a] + Gadfly v1.3.0
[78b55507] + Gettext_jll v0.20.1+4
[7746bdde] + Glib_jll v2.59.0+2
[a2bd30eb] + Graphics v1.0.2
[3b182d85] + Graphite2_jll v1.3.13+1
[2e76f6c2] + HarfBuzz_jll v2.6.1+5
[a1b4810d] + Hexagons v0.2.0
[9b13fd28] + IndirectArrays v0.5.1
[d25df0c9] + Inflate v0.1.2
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.10
[c8e1da08] + IterTools v1.3.0
[682c06a0] + JSON v0.21.0
[e5e0dc1b] + Juno v0.8.3
[5ab0869b] + KernelDensity v0.5.1
[dd4b983a] + LZO_jll v2.10.0+1
[e9f186c6] + Libffi_jll v3.2.1+1
[d4300ac3] + Libgcrypt_jll v1.8.5+1
[7add5ba3] + Libgpg_error_jll v1.36.0+1
[94ce4f54] + Libiconv_jll v1.16.0+5
[4b2f31a3] + Libmount_jll v2.34.0+1
[38a345b3] + Libuuid_jll v2.34.0+4
[093fc24a] + LightGraphs v1.3.3
[d3d80556] + LineSearches v7.0.1
[4345ca2d] + Loess v0.5.0
[856f044c] + MKL_jll v2020.1.216+0
[1914dd2f] + MacroTools v0.5.5
[5424a776] + Mamba v0.12.4
[442fdcdd] + Measures v0.3.1
[e89f7d12] + Media v0.5.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.6.3
[77ba4419] + NaNMath v0.3.4
[6fe1bfb0] + OffsetArrays v1.1.2
[4536629a] + OpenBLAS_jll v0.3.9+5
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[429524aa] + Optim v0.22.0
[bac558e1] + OrderedCollections v1.3.0
[2f80f16e] + PCRE_jll v8.42.0+2
[90014a1f] + PDMats v0.9.12
[36c8627f] + Pango_jll v1.42.4+8
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v1.0.10
[30392449] + Pixman_jll v0.38.4+2
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.4.0
[c84ed2f1] + Ratios v0.4.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[992d4aef] + Showoff v0.3.1
[699a6c99] + SimpleTraits v0.9.2
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.4
[2913bbd2] + StatsBase v0.33.0
[4c63d2b9] + StatsFuns v0.9.5
[3a884ed6] + UnPack v1.0.1
[efce3f68] + WoodburyMatrices v0.5.2
[02c8fc9c] + XML2_jll v2.9.10+1
[aed1982a] + XSLT_jll v1.1.33+2
[4f6342f7] + Xorg_libX11_jll v1.6.9+2
[0c0b7dd1] + Xorg_libXau_jll v1.0.9+2
[a3789734] + Xorg_libXdmcp_jll v1.1.3+2
[1082639a] + Xorg_libXext_jll v1.3.4+2
[ea2f1a96] + Xorg_libXrender_jll v0.9.10+2
[14d82f49] + Xorg_libpthread_stubs_jll v0.1.0+1
[c7cfdc94] + Xorg_libxcb_jll v1.13.0+2
[c5fb5394] + Xorg_xtrans_jll v1.4.0+1
[83775a58] + Zlib_jll v1.2.11+15
[b53b4c65] + libpng_jll v1.6.37+3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building FFTW → `~/.julia/packages/FFTW/kcXL6/deps/build.log`
Testing Mamba
Status `/tmp/jl_1JdzdC/Project.toml`
[159f3aea] Cairo v1.0.5
[49dc2e85] Calculus v0.5.1
[a81c6b42] Compose v0.8.2
[31c24e10] Distributions v0.23.4
[c91e804a] Gadfly v1.3.0
[093fc24a] LightGraphs v1.3.3
[5424a776] Mamba v0.12.4
[90014a1f] PDMats v0.9.12
[189a3867] Reexport v0.2.0
[992d4aef] Showoff v0.3.1
[276daf66] SpecialFunctions v0.10.3
[2913bbd2] StatsBase v0.33.0
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[37e2e46d] LinearAlgebra
[de0858da] Printf
[9a3f8284] Random
[9e88b42a] Serialization
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_1JdzdC/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[ec485272] ArnoldiMethod v0.0.4
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[4fba245c] ArrayInterface v2.11.0
[13072b0f] AxisAlgorithms v1.0.0
[6e34b625] Bzip2_jll v1.0.6+3
[159f3aea] Cairo v1.0.5
[83423d85] Cairo_jll v1.16.0+4
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.8.1
[3da002f7] ColorTypes v0.10.8
[5ae59095] Colors v0.12.3
[bbf7d656] CommonSubexpressions v0.3.0
[34da2185] Compat v3.13.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[a81c6b42] Compose v0.8.2
[d38c429a] Contour v0.5.4
[7ad07ef1] CoupledFields v0.2.0
[9a962f9c] DataAPI v1.3.0
[864edb3b] DataStructures v0.17.20
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[b4f34e82] Distances v0.9.0
[31c24e10] Distributions v0.23.4
[ffbed154] DocStringExtensions v0.8.2
[2e619515] Expat_jll v2.2.7+3
[7a1cc6ca] FFTW v1.2.2
[f5851436] FFTW_jll v3.3.9+5
[1a297f60] FillArrays v0.8.14
[6a86dc24] FiniteDiff v2.5.2
[53c48c17] FixedPointNumbers v0.8.4
[a3f928ae] Fontconfig_jll v2.13.1+12
[f6369f11] ForwardDiff v0.10.12
[d7e528f0] FreeType2_jll v2.10.1+3
[559328eb] FriBidi_jll v1.0.5+4
[c91e804a] Gadfly v1.3.0
[78b55507] Gettext_jll v0.20.1+4
[7746bdde] Glib_jll v2.59.0+2
[a2bd30eb] Graphics v1.0.2
[3b182d85] Graphite2_jll v1.3.13+1
[2e76f6c2] HarfBuzz_jll v2.6.1+5
[a1b4810d] Hexagons v0.2.0
[9b13fd28] IndirectArrays v0.5.1
[d25df0c9] Inflate v0.1.2
[1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] Interpolations v0.12.10
[c8e1da08] IterTools v1.3.0
[682c06a0] JSON v0.21.0
[e5e0dc1b] Juno v0.8.3
[5ab0869b] KernelDensity v0.5.1
[dd4b983a] LZO_jll v2.10.0+1
[e9f186c6] Libffi_jll v3.2.1+1
[d4300ac3] Libgcrypt_jll v1.8.5+1
[7add5ba3] Libgpg_error_jll v1.36.0+1
[94ce4f54] Libiconv_jll v1.16.0+5
[4b2f31a3] Libmount_jll v2.34.0+1
[38a345b3] Libuuid_jll v2.34.0+4
[093fc24a] LightGraphs v1.3.3
[d3d80556] LineSearches v7.0.1
[4345ca2d] Loess v0.5.0
[856f044c] MKL_jll v2020.1.216+0
[1914dd2f] MacroTools v0.5.5
[5424a776] Mamba v0.12.4
[442fdcdd] Measures v0.3.1
[e89f7d12] Media v0.5.0
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.6.3
[77ba4419] NaNMath v0.3.4
[6fe1bfb0] OffsetArrays v1.1.2
[4536629a] OpenBLAS_jll v0.3.9+5
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[429524aa] Optim v0.22.0
[bac558e1] OrderedCollections v1.3.0
[2f80f16e] PCRE_jll v8.42.0+2
[90014a1f] PDMats v0.9.12
[36c8627f] Pango_jll v1.42.4+8
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v1.0.10
[30392449] Pixman_jll v0.38.4+2
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.4.0
[c84ed2f1] Ratios v0.4.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[992d4aef] Showoff v0.3.1
[699a6c99] SimpleTraits v0.9.2
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.33.0
[4c63d2b9] StatsFuns v0.9.5
[3a884ed6] UnPack v1.0.1
[efce3f68] WoodburyMatrices v0.5.2
[02c8fc9c] XML2_jll v2.9.10+1
[aed1982a] XSLT_jll v1.1.33+2
[4f6342f7] Xorg_libX11_jll v1.6.9+2
[0c0b7dd1] Xorg_libXau_jll v1.0.9+2
[a3789734] Xorg_libXdmcp_jll v1.1.3+2
[1082639a] Xorg_libXext_jll v1.3.4+2
[ea2f1a96] Xorg_libXrender_jll v0.9.10+2
[14d82f49] Xorg_libpthread_stubs_jll v0.1.0+1
[c7cfdc94] Xorg_libxcb_jll v1.13.0+2
[c5fb5394] Xorg_xtrans_jll v1.4.0+1
[83775a58] Zlib_jll v1.2.11+15
[b53b4c65] libpng_jll v1.6.37+3
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[9abbd945] Profile
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Running tests:
>>> Testing ../doc/tutorial/line.jl
digraph MambaModel {
"beta" [shape="ellipse"];
"beta" -> "mu";
"y" [shape="ellipse", style="filled", fillcolor="gray85"];
"mu" [shape="diamond", style="filled", fillcolor="gray85"];
"mu" -> "y";
"s2" [shape="ellipse"];
"s2" -> "y";
"xmat" [shape="box", style="filled", fillcolor="gray85"];
"xmat" -> "mu";
}
MCMC Simulation of 10000 Iterations x 3 Chains...
Chain 1: 0% [1:09:01 of 1:09:05 remaining]
Chain 1: 10% [0:00:50 of 0:00:56 remaining]
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Chain 3: 100% [0:00:00 of 0:00:04 remaining]
MCMC Simulation of 10000 Iterations x 3 Chains...
Chain 1: 0% [0:01:20 of 0:01:20 remaining]
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MCMC Simulation of 10000 Iterations x 3 Chains...
Chain 1: 0% [1:11:45 of 1:11:49 remaining]
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Chain 3: 100% [0:00:00 of 0:00:00 remaining]
Iterations = 252:10000
Thinning interval = 2
Chains = 1,2,3
Samples per chain = 4875
Gelman, Rubin, and Brooks Diagnostic:
PSRF 97.5%
s2 1.004 1.007
beta[1] 1.008 1.009
beta[2] 1.006 1.007
Multivariate 1.002 NaN
Iterations = 252:10000
Thinning interval = 2
Chains = 1,2,3
Samples per chain = 4875
Geweke Diagnostic:
First Window Fraction = 0.1
Second Window Fraction = 0.5
Z-score p-value
s2 -0.385 0.7005
beta[1] -1.437 0.1506
beta[2] 1.610 0.1073
Z-score p-value
s2 0.324 0.7460
beta[1] 1.350 0.1769
beta[2] -1.493 0.1354
Z-score p-value
s2 -0.444 0.6568
beta[1] 1.274 0.2027
beta[2] -1.678 0.0934
Iterations = 252:10000
Thinning interval = 2
Chains = 1,2,3
Samples per chain = 4875
Heidelberger and Welch Diagnostic:
Target Halfwidth Ratio = 0.1
Alpha = 0.05
Burn-in Stationarity p-value Mean Halfwidth Test
s2 2199 1 0.6066 1.15095914 0.157759205 0
beta[1] 251 1 0.1365 0.57660673 0.066788841 0
beta[2] 251 1 0.0849 0.80598853 0.018926192 1
Burn-in Stationarity p-value Mean Halfwidth Test
s2 251 1 0.9163 1.1147664 0.166389252 0
beta[1] 251 1 0.5968 0.5815833 0.063650960 0
beta[2] 251 1 0.6460 0.8032482 0.018441451 1
Burn-in Stationarity p-value Mean Halfwidth Test
s2 2199 1 0.3622 1.24456315 0.42256102 0
beta[1] 251 1 0.5198 0.62267152 0.18692753 0
beta[2] 251 1 0.5275 0.79439123 0.04836314 1
Iterations = 252:10000
Thinning interval = 2
Chains = 1,2,3
Samples per chain = 4875
Raftery and Lewis Diagnostic:
Quantile (q) = 0.025
Accuracy (r) = 0.005
Probability (s) = 0.95
Thinning Burn-in Total Nmin Dependence Factor
s2 2 253 7.7470×10³ 3746 2.0680726
beta[1] 2 279 2.9951×10⁴ 3746 7.9954618
beta[2] 4 275 2.7147×10⁴ 3746 7.2469301
Thinning Burn-in Total Nmin Dependence Factor
s2 2 257 8.8310×10³ 3746 2.3574479
beta[1] 2 269 1.9007×10⁴ 3746 5.0739455
beta[2] 4 271 2.1147×10⁴ 3746 5.6452216
Thinning Burn-in Total Nmin Dependence Factor
s2 4 267 2.1151×10⁴ 3746 5.6462894
beta[1] 2 291 4.3767×10⁴ 3746 11.6836626
beta[2] 4 283 3.6335×10⁴ 3746 9.6996797
Iterations = 252:10000
Thinning interval = 2
Chains = 1,2,3
Samples per chain = 4875
Empirical Posterior Estimates:
Mean SD Naive SE MCSE ESS
s2 1.34195938 2.26493828 0.0187287345 0.120510626 353.23364
beta[1] 0.59362053 1.25656267 0.0103904945 0.033806208 1381.57793
beta[2] 0.80120933 0.37752149 0.0031217185 0.009392822 1615.44139
Quantiles:
2.5% 25.0% 50.0% 75.0% 97.5%
s2 0.17564293 0.388954662 0.6693062 1.32134292 7.3910865
beta[1] -1.99224168 0.054476417 0.6301930 1.18120389 2.9232332
beta[2] 0.10855704 0.623902978 0.7894798 0.96728754 1.5591833
95% Lower 95% Upper
s2 0.07408963 4.4775756
beta[1] -1.75439813 3.0814022
beta[2] 0.09541722 1.5365782
s2 beta[1] beta[2]
s2 1.00000000 -0.11862474 0.09980099
beta[1] -0.11862474 1.00000000 -0.90880284
beta[2] 0.09980099 -0.90880284 1.00000000
Lag 2 Lag 10 Lag 20 Lag 100
s2 0.91347560 0.723053227 0.560237056 0.0007369812
beta[1] 0.33112180 0.029039767 -0.053065190 -0.0374799587
beta[2] 0.28410422 0.005044630 -0.040224322 -0.0357209602
Lag 2 Lag 10 Lag 20 Lag 100
s2 0.75588882 0.349531641 0.1374682700 -0.006928787
beta[1] 0.35175047 0.057134410 0.0131967370 -0.020068916
beta[2] 0.32263276 0.035103726 0.0048650670 -0.026414706
Lag 2 Lag 10 Lag 20 Lag 100
s2 0.93638308 0.80613793 0.64147781 0.160410235
beta[1] 0.59582330 0.24698778 0.18212531 0.070951705
beta[2] 0.57681437 0.21401694 0.12886571 0.035605784
Change Rate
s2 1.000
beta[1] 0.591
beta[2] 0.591
Multivariate 1.000
MCMC Processing of 4875 Iterations x 3 Chains...
Chain 1: 0% [0:06:23 of 0:06:24 remaining]
Chain 1: 10% [0:00:07 of 0:00:08 remaining]
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Chain 3: 0% [0:08:14 of 0:08:15 remaining]
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Chain 3: 90% [0:00:00 of 0:00:01 remaining]
Chain 3: 100% [0:00:00 of 0:00:01 remaining]
DIC Effective Parameters
pD 13.765813 0.95672434
pV 24.441680 6.29465778
Iterations = 1000:5000
Thinning interval = 2
Chains = 1,2,3
Samples per chain = 2001
Empirical Posterior Estimates:
Mean SD Naive SE MCSE ESS
beta[1] 0.5270595 1.4699730 0.0189725278 0.0534293539 756.93554
beta[2] 0.8211748 0.4416773 0.0057006043 0.0143178787 951.59638
Quantiles:
2.5% 25.0% 50.0% 75.0% 97.5%
beta[1] -2.584665659 -0.0011594201 0.58367672 1.12380636 3.1966005
beta[2] 0.021264304 0.6337142186 0.81011045 0.97955732 1.6932279
MCMC Simulation of 5000 Iterations x 3 Chains...
Chain 1: 0% [0:00:13 of 0:00:13 remaining]
Chain 1: 10% [0:00:04 of 0:00:04 remaining]
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Chain 2: 40% [0:00:03 of 0:00:04 remaining]
Chain 2: 50% [0:00:02 of 0:00:04 remaining]
Chain 2: 60% [0:00:02 of 0:00:04 remaining]
Chain 2: 70% [0:00:01 of 0:00:04 remaining]
Chain 2: 80% [0:00:01 of 0:00:04 remaining]
Chain 2: 90% [0:00:00 of 0:00:04 remaining]
Chain 2: 100% [0:00:00 of 0:00:04 remaining]
Chain 3: 0% [0:00:02 of 0:00:02 remaining]
Chain 3: 10% [0:00:02 of 0:00:02 remaining]
Chain 3: 20% [0:00:02 of 0:00:02 remaining]
Chain 3: 30% [0:00:02 of 0:00:02 remaining]
Chain 3: 40% [0:00:01 of 0:00:02 remaining]
Chain 3: 50% [0:00:01 of 0:00:02 remaining]
Chain 3: 60% [0:00:01 of 0:00:02 remaining]
Chain 3: 70% [0:00:01 of 0:00:02 remaining]
Chain 3: 80% [0:00:00 of 0:00:02 remaining]
Chain 3: 90% [0:00:00 of 0:00:02 remaining]
Chain 3: 100% [0:00:00 of 0:00:02 remaining]
Iterations = 252:15000
Thinning interval = 2
Chains = 1,2,3
Samples per chain = 7375
Empirical Posterior Estimates:
Mean SD Naive SE MCSE ESS
s2 1.32157705 2.0986164 0.0141088440 0.0882947137 564.93273
beta[1] 0.60144995 1.2458026 0.0083754396 0.0257509052 2340.52616
beta[2] 0.80047181 0.3753913 0.0025237281 0.0072669582 2668.47456
Quantiles:
2.5% 25.0% 50.0% 75.0% 97.5%
s2 0.17796002 0.39611210 0.68250300 1.34503801 6.8621026
beta[1] -1.97959921 0.01509525 0.63810288 1.20952328 2.9326572
beta[2] 0.09143892 0.61617835 0.79653393 0.97466715 1.5670585
Object of type "Model"
-------------------------------------------------------------------------------
beta:
A monitored node of type "2-element ArrayStochastic{1}"
[1.1902678809862768, 2.04817970778924]
-------------------------------------------------------------------------------
y:
An unmonitored node of type "5-element ArrayStochastic{1}"
[1.0, 3.0, 3.0, 3.0, 5.0]
-------------------------------------------------------------------------------
mu:
An unmonitored node of type "5-element ArrayLogical{1}"
[3.2384475887755166, 5.286627296564756, 7.334807004353996, 9.382986712143236, 11.431166419932476]
-------------------------------------------------------------------------------
xmat:
[1.0 1.0; 1.0 2.0; 1.0 3.0; 1.0 4.0; 1.0 5.0]
-------------------------------------------------------------------------------
s2:
A monitored node of type "ScalarStochastic"
0.5089331579554403
>>> Testing ../doc/samplers/amm.jl
Iterations = 1:5000
Thinning interval = 1
Chains = 1
Samples per chain = 5000
Empirical Posterior Estimates:
Mean SD Naive SE MCSE ESS
b0 0.64517314 1.24757447 0.017643367 0.077890318 256.54645
b1 0.77989321 0.39436878 0.005577217 0.027694002 202.78397
s2 1.46868477 2.71633428 0.038414768 0.178202069 232.34907
Quantiles:
2.5% 25.0% 50.0% 75.0% 97.5%
b0 -1.768364974 0.06974128 0.61720286 1.29023652 3.1789614
b1 0.010584061 0.57947874 0.78001712 0.97541858 1.5733141
s2 0.181878908 0.41367730 0.67597582 1.40504444 8.5217766
>>> Testing ../doc/samplers/amwg.jl
Iterations = 1:5000
Thinning interval = 1
Chains = 1
Samples per chain = 5000
Empirical Posterior Estimates:
Mean SD Naive SE MCSE ESS
b0 0.5983881 1.5898262 0.0224835377 0.162560986 95.645964
b1 0.8006155 0.4358909 0.0061644284 0.042038394 107.513597
s2 2.2710644 9.1262030 0.1290640007 0.686946293 176.495925
Quantiles:
2.5% 25.0% 50.0% 75.0% 97.5%
b0 -2.17471713 0.03038741 0.67912808 1.30557650 3.3496859
b1 0.03755749 0.60096712 0.77599921 0.96011511 1.7513752
s2 0.16901125 0.39945048 0.70340929 1.47274298 13.3376638
>>> Testing ../doc/samplers/bhmc.jl
Iterations = 1:10000
Thinning interval = 1
Chains = 1
Samples per chain = 10000
Empirical Posterior Estimates:
Mean SD Naive SE MCSE ESS
gamma[1] 0.5533 0.49717585 0.0049717585 0.0044108567 10000.0000
gamma[2] 0.0000 0.00000000 0.0000000000 0.0000000000 NaN
gamma[3] 0.2654 0.44156804 0.0044156804 0.0063634372 4815.1713
gamma[4] 0.7782 0.41547806 0.0041547806 0.0045179328 8457.0064
gamma[5] 1.0000 0.00000000 0.0000000000 0.0000000000 NaN
gamma[6] 0.5865 0.49248554 0.0049248554 0.0047255484 10000.0000
gamma[7] 0.0000 0.00000000 0.0000000000 0.0000000000 NaN
gamma[8] 0.5151 0.49979693 0.0049979693 0.0043935099 10000.0000
gamma[9] 0.7776 0.41587923 0.0041587923 0.0054422960 5839.4258
gamma[10] 0.0000 0.00000000 0.0000000000 0.0000000000 NaN
Quantiles:
2.5% 25.0% 50.0% 75.0% 97.5%
gamma[1] 0 0 1 1 1
gamma[2] 0 0 0 0 0
gamma[3] 0 0 0 1 1
gamma[4] 0 1 1 1 1
gamma[5] 1 1 1 1 1
gamma[6] 0 0 1 1 1
gamma[7] 0 0 0 0 0
gamma[8] 0 0 1 1 1
gamma[9] 0 1 1 1 1
gamma[10] 0 0 0 0 0
>>> Testing ../doc/samplers/bia.jl
Iterations = 1:10000
Thinning interval = 1
Chains = 1
Samples per chain = 10000
Empirical Posterior Estimates:
Mean SD Naive SE MCSE ESS
gamma[1] 0.5138 0.499834516 0.00499834516 0.0089044082 3150.95621
gamma[2] 0.0000 0.000000000 0.00000000000 0.0000000000 NaN
gamma[3] 0.0020 0.044678850 0.00044678850 0.0014354811 968.74393
gamma[4] 0.9979 0.045779904 0.00045779904 0.0021000000 475.23800
gamma[5] 0.9989 0.033149659 0.00033149659 0.0011000000 908.18173
gamma[6] 0.9905 0.097008716 0.00097008716 0.0032172986 909.15679
gamma[7] 0.0000 0.000000000 0.00000000000 0.0000000000 NaN
gamma[8] 0.4973 0.500017711 0.00500017711 0.0081561218 3758.40319
gamma[9] 0.9997 0.017318776 0.00017318776 0.0003000000 3332.66660
gamma[10] 0.0003 0.017318776 0.00017318776 0.0003000000 3332.66660
Quantiles:
2.5% 25.0% 50.0% 75.0% 97.5%
gamma[1] 0 0 1 1 1
gamma[2] 0 0 0 0 0
gamma[3] 0 0 0 0 0
gamma[4] 1 1 1 1 1
gamma[5] 1 1 1 1 1
gamma[6] 1 1 1 1 1
gamma[7] 0 0 0 0 0
gamma[8] 0 0 0 1 1
gamma[9] 1 1 1 1 1
gamma[10] 0 0 0 0 0
>>> Testing ../doc/samplers/bmc3.jl
Iterations = 1:10000
Thinning interval = 1
Chains = 1
Samples per chain = 10000
Empirical Posterior Estimates:
Mean SD Naive SE MCSE ESS
gamma[1] 0.5008 0.500024362 0.00500024362 0.0133799790 1396.59816
gamma[2] 0.0000 0.000000000 0.00000000000 0.0000000000 NaN
gamma[3] 0.0015 0.038702710 0.00038702710 0.0014025590 761.44842
gamma[4] 0.9990 0.031608542 0.00031608542 0.0010000000 999.09991
gamma[5] 0.9996 0.019996999 0.00019996999 0.0004000000 2499.24992
gamma[6] 0.9886 0.106165753 0.00106165753 0.0043531482 594.78771
gamma[7] 0.0000 0.000000000 0.00000000000 0.0000000000 NaN
gamma[8] 0.4834 0.499749352 0.00499749352 0.0148556829 1131.66853
gamma[9] 0.9978 0.046854877 0.00046854877 0.0022000000 453.59081
gamma[10] 0.0000 0.000000000 0.00000000000 0.0000000000 NaN
Quantiles:
2.5% 25.0% 50.0% 75.0% 97.5%
gamma[1] 0 0 1 1 1
gamma[2] 0 0 0 0 0
gamma[3] 0 0 0 0 0
gamma[4] 1 1 1 1 1
gamma[5] 1 1 1 1 1
gamma[6] 1 1 1 1 1
gamma[7] 0 0 0 0 0
gamma[8] 0 0 0 1 1
gamma[9] 1 1 1 1 1
gamma[10] 0 0 0 0 0
Iterations = 1:10000
Thinning interval = 1
Chains = 1
Samples per chain = 10000
Empirical Posterior Estimates:
Mean SD Naive SE MCSE ESS
gamma[1] 0.5214 0.499566809 0.00499566809 0.0151770827 1083.45419
gamma[2] 0.0000 0.000000000 0.00000000000 0.0000000000 NaN
gamma[3] 0.0059 0.076588358 0.00076588358 0.0033517521 522.13370
gamma[4] 1.0000 0.000000000 0.00000000000 0.0000000000 NaN
gamma[5] 0.9993 0.026449574 0.00026449574 0.0007000000 1427.71420
gamma[6] 0.9888 0.105240998 0.00105240998 0.0044907987 549.19015
gamma[7] 0.0000 0.000000000 0.00000000000 0.0000000000 NaN
gamma[8] 0.4850 0.499799940 0.00499799940 0.0140270302 1269.58253
gamma[9] 0.9976 0.048933419 0.00048933419 0.0024000000 415.70824
gamma[10] 0.0000 0.000000000 0.00000000000 0.0000000000 NaN
Quantiles:
2.5% 25.0% 50.0% 75.0% 97.5%
gamma[1] 0 0 1 1 1
gamma[2] 0 0 0 0 0
gamma[3] 0 0 0 0 0
gamma[4] 1 1 1 1 1
gamma[5] 1 1 1 1 1
gamma[6] 1 1 1 1 1
gamma[7] 0 0 0 0 0
gamma[8] 0 0 0 1 1
gamma[9] 1 1 1 1 1
gamma[10] 0 0 0 0 0
>>> Testing ../doc/samplers/bmg.jl
Iterations = 1:10000
Thinning interval = 1
Chains = 1
Samples per chain = 10000
Empirical Posterior Estimates:
Mean SD Naive SE MCSE ESS
gamma[1] 0.4792 0.499592153 0.00499592153 0.0186269491 719.36245
gamma[2] 0.0000 0.000000000 0.00000000000 0.0000000000 NaN
gamma[3] 0.0049 0.069831781 0.00069831781 0.0032395754 464.65441