-
Notifications
You must be signed in to change notification settings - Fork 5
/
1.6.0-DEV-03e1a89ff1.log
294 lines (293 loc) · 12.9 KB
/
1.6.0-DEV-03e1a89ff1.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
Julia Version 1.6.0-DEV.633
Commit 03e1a89ff1 (2020-08-13 14:37 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
Installed SentinelArrays ─────────────── v1.2.10
Installed InvertedIndices ────────────── v1.0.0
Installed IteratorInterfaceExtensions ── v1.0.0
Installed PDMats ─────────────────────── v0.10.0
Installed Rmath ──────────────────────── v0.6.1
Installed Intervals ──────────────────── v1.4.2
Installed DataFrames ─────────────────── v0.21.6
Installed FillArrays ─────────────────── v0.9.2
Installed Combinatorics ──────────────── v0.7.0
Installed JLD2 ───────────────────────── v0.1.14
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed CpuId ──────────────────────── v0.2.2
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed DataAPI ────────────────────── v1.3.0
Installed UnPack ─────────────────────── v1.0.1
Installed PopGen ─────────────────────── v0.0.3
Installed Parsers ────────────────────── v1.0.10
Installed BenchmarkTools ─────────────── v0.5.0
Installed ExprTools ──────────────────── v0.1.1
Installed Mocking ────────────────────── v0.7.1
Installed OrderedCollections ─────────── v1.3.0
Installed StatsFuns ──────────────────── v0.9.5
Installed IntervalTrees ──────────────── v1.0.0
Installed BGZFStreams ────────────────── v0.3.0
Installed SpecialFunctions ───────────── v0.10.3
Installed CategoricalArrays ──────────── v0.8.1
Installed VectorizationBase ──────────── v0.12.31
Installed BufferedStreams ────────────── v1.0.0
Installed IndexableBitVectors ────────── v1.0.0
Installed YAML ───────────────────────── v0.4.0
Installed Automa ─────────────────────── v0.8.0
Installed BioSequences ───────────────── v1.1.0
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed DataValueInterfaces ────────── v1.0.0
Installed EzXML ──────────────────────── v1.1.0
Installed DocStringExtensions ────────── v0.8.2
Installed Reexport ───────────────────── v0.2.0
Installed Missings ───────────────────── v0.4.3
Installed XML2_jll ───────────────────── v2.9.10+1
Installed TimeZones ──────────────────── v1.3.2
Installed MultipleTesting ────────────── v0.4.1
Installed Compat ─────────────────────── v3.13.0
Installed SIMDPirates ────────────────── v0.8.24
Installed CodecZlib ──────────────────── v0.7.0
Installed QuadGK ─────────────────────── v2.4.0
Installed Tables ─────────────────────── v1.0.5
Installed FileIO ─────────────────────── v1.4.1
Installed Polynomials ────────────────── v0.8.0
Installed LoopVectorization ──────────── v0.8.23
Installed BioCore ────────────────────── v2.0.5
Installed Twiddle ────────────────────── v1.1.2
Installed StatsBase ──────────────────── v0.33.0
Installed Zlib_jll ───────────────────── v1.2.11+15
Installed JSON ───────────────────────── v0.21.0
Installed Libiconv_jll ───────────────── v1.16.0+5
Installed OffsetArrays ───────────────── v1.1.2
Installed TableTraits ────────────────── v1.0.0
Installed TranscodingStreams ─────────── v0.9.5
Installed SLEEFPirates ───────────────── v0.5.5
Installed Distributions ──────────────── v0.23.9
Installed CSV ────────────────────────── v0.7.7
Installed PooledArrays ───────────────── v0.5.3
Installed SortingAlgorithms ──────────── v0.3.1
Installed BioSymbols ─────────────────── v3.1.0
Installed RecipesBase ────────────────── v1.0.2
Installed DataStructures ─────────────── v0.17.20
Installed GeneticVariation ───────────── v0.4.0
Updating `~/.julia/environments/v1.6/Project.toml`
[af524d12] + PopGen v0.0.3
Updating `~/.julia/environments/v1.6/Manifest.toml`
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[6e4b80f9] + BenchmarkTools v0.5.0
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[336ed68f] + CSV v0.7.7
[324d7699] + CategoricalArrays v0.8.1
[944b1d66] + CodecZlib v0.7.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v3.13.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[adafc99b] + CpuId v0.2.2
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.6
[864edb3b] + DataStructures v0.17.20
[e2d170a0] + DataValueInterfaces v1.0.0
[31c24e10] + Distributions v0.23.9
[ffbed154] + DocStringExtensions v0.8.2
[e2ba6199] + ExprTools v0.1.1
[8f5d6c58] + EzXML v1.1.0
[5789e2e9] + FileIO v1.4.1
[1a297f60] + FillArrays v0.9.2
[9bc6ac9d] + GeneticVariation v0.4.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[d8418881] + Intervals v1.4.2
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[033835bb] + JLD2 v0.1.14
[682c06a0] + JSON v0.21.0
[94ce4f54] + Libiconv_jll v1.16.0+5
[bdcacae8] + LoopVectorization v0.8.23
[e1d29d7a] + Missings v0.4.3
[78c3b35d] + Mocking v0.7.1
[f8716d33] + MultipleTesting v0.4.1
[6fe1bfb0] + OffsetArrays v1.1.2
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.3.0
[90014a1f] + PDMats v0.10.0
[69de0a69] + Parsers v1.0.10
[f27b6e38] + Polynomials v0.8.0
[2dfb63ee] + PooledArrays v0.5.3
[af524d12] + PopGen v0.0.3
[1fd47b50] + QuadGK v2.4.0
[3cdcf5f2] + RecipesBase v1.0.2
[189a3867] + Reexport v0.2.0
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[21efa798] + SIMDPirates v0.8.24
[476501e8] + SLEEFPirates v0.5.5
[91c51154] + SentinelArrays v1.2.10
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[2913bbd2] + StatsBase v0.33.0
[4c63d2b9] + StatsFuns v0.9.5
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.5
[f269a46b] + TimeZones v1.3.2
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.2
[3a884ed6] + UnPack v1.0.1
[3d5dd08c] + VectorizationBase v0.12.31
[02c8fc9c] + XML2_jll v2.9.10+1
[ddb6d928] + YAML v0.4.0
[83775a58] + Zlib_jll v1.2.11+15
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building TimeZones ───→ `~/.julia/packages/TimeZones/v0mfN/deps/build.log`
Building SLEEFPirates → `~/.julia/packages/SLEEFPirates/jGsib/deps/build.log`
Testing PopGen
Status `/tmp/jl_q0zx7O/Project.toml`
[6e4b80f9] BenchmarkTools v0.5.0
[336ed68f] CSV v0.7.7
[a93c6f00] DataFrames v0.21.6
[31c24e10] Distributions v0.23.9
[5789e2e9] FileIO v1.4.1
[9bc6ac9d] GeneticVariation v0.4.0
[033835bb] JLD2 v0.1.14
[bdcacae8] LoopVectorization v0.8.23
[f8716d33] MultipleTesting v0.4.1
[af524d12] PopGen v0.0.3
[2913bbd2] StatsBase v0.33.0
[9a3f8284] Random
[8dfed614] Test
Status `/tmp/jl_q0zx7O/Manifest.toml`
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[6e4b80f9] BenchmarkTools v0.5.0
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[e1450e63] BufferedStreams v1.0.0
[336ed68f] CSV v0.7.7
[324d7699] CategoricalArrays v0.8.1
[944b1d66] CodecZlib v0.7.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v3.13.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[adafc99b] CpuId v0.2.2
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.6
[864edb3b] DataStructures v0.17.20
[e2d170a0] DataValueInterfaces v1.0.0
[31c24e10] Distributions v0.23.9
[ffbed154] DocStringExtensions v0.8.2
[e2ba6199] ExprTools v0.1.1
[8f5d6c58] EzXML v1.1.0
[5789e2e9] FileIO v1.4.1
[1a297f60] FillArrays v0.9.2
[9bc6ac9d] GeneticVariation v0.4.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[524e6230] IntervalTrees v1.0.0
[d8418881] Intervals v1.4.2
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[033835bb] JLD2 v0.1.14
[682c06a0] JSON v0.21.0
[94ce4f54] Libiconv_jll v1.16.0+5
[bdcacae8] LoopVectorization v0.8.23
[e1d29d7a] Missings v0.4.3
[78c3b35d] Mocking v0.7.1
[f8716d33] MultipleTesting v0.4.1
[6fe1bfb0] OffsetArrays v1.1.2
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.3.0
[90014a1f] PDMats v0.10.0
[69de0a69] Parsers v1.0.10
[f27b6e38] Polynomials v0.8.0
[2dfb63ee] PooledArrays v0.5.3
[af524d12] PopGen v0.0.3
[1fd47b50] QuadGK v2.4.0
[3cdcf5f2] RecipesBase v1.0.2
[189a3867] Reexport v0.2.0
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[21efa798] SIMDPirates v0.8.24
[476501e8] SLEEFPirates v0.5.5
[91c51154] SentinelArrays v1.2.10
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[2913bbd2] StatsBase v0.33.0
[4c63d2b9] StatsFuns v0.9.5
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.5
[f269a46b] TimeZones v1.3.2
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.2
[3a884ed6] UnPack v1.0.1
[3d5dd08c] VectorizationBase v0.12.31
[02c8fc9c] XML2_jll v2.9.10+1
[ddb6d928] YAML v0.4.0
[83775a58] Zlib_jll v1.2.11+15
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[9abbd945] Profile
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
[ Info: Compiling VCF parser...
Test Summary: |
PopGen.jl | No tests
Testing PopGen tests passed