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1.6.0-DEV-03e1a89ff1.log
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Julia Version 1.6.0-DEV.633
Commit 03e1a89ff1 (2020-08-13 14:37 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
Installed InvertedIndices ────────────── v1.0.0
Installed IteratorInterfaceExtensions ── v1.0.0
Installed PDMats ─────────────────────── v0.10.0
Installed SentinelArrays ─────────────── v1.2.10
Installed Rmath ──────────────────────── v0.6.1
Installed StanBase ───────────────────── v2.0.8
Installed DataFrames ─────────────────── v0.21.6
Installed Stan ───────────────────────── v6.0.8
Installed CpuId ──────────────────────── v0.2.2
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed FillArrays ─────────────────── v0.9.2
Installed DataAPI ────────────────────── v1.3.0
Installed Parsers ────────────────────── v1.0.10
Installed UnPack ─────────────────────── v1.0.1
Installed StanSamples ────────────────── v0.1.0
Installed URIParser ──────────────────── v0.4.1
Installed StatsFuns ──────────────────── v0.9.5
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed SpecialFunctions ───────────── v0.10.3
Installed CategoricalArrays ──────────── v0.8.1
Installed OrderedCollections ─────────── v1.3.0
Installed StanOptimize ───────────────── v2.0.4
Installed StanDiagnose ───────────────── v2.0.3
Installed Documenter ─────────────────── v0.25.1
Installed VectorizationBase ──────────── v0.12.31
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed DataValueInterfaces ────────── v1.0.0
Installed ElasticArrays ──────────────── v1.2.4
Installed Missings ───────────────────── v0.4.3
Installed GenericLinearAlgebra ───────── v0.2.4
Installed DocStringExtensions ────────── v0.8.2
Installed Requires ───────────────────── v1.0.1
Installed Reexport ───────────────────── v0.2.0
Installed ArgCheck ───────────────────── v2.1.0
Installed StanVariational ────────────── v2.0.4
Installed StanDump ───────────────────── v0.2.0
Installed StaticArrays ───────────────── v0.12.4
Installed Compat ─────────────────────── v3.13.0
Installed SIMDPirates ────────────────── v0.8.24
Installed QuadGK ─────────────────────── v2.4.0
Installed Tables ─────────────────────── v1.0.5
Installed Adapt ──────────────────────── v2.0.2
Installed TableTraits ────────────────── v1.0.0
Installed JSON ───────────────────────── v0.21.0
Installed CSV ────────────────────────── v0.7.7
Installed StatsBase ──────────────────── v0.33.0
Installed Distributions ──────────────── v0.23.9
Installed StanSample ─────────────────── v2.1.7
Installed MacroTools ─────────────────── v0.5.5
Installed PooledArrays ───────────────── v0.5.3
Installed SLEEFPirates ───────────────── v0.5.5
Installed RecipesBase ────────────────── v1.0.2
Installed BinDeps ────────────────────── v1.0.1
Installed SortingAlgorithms ──────────── v0.3.1
Installed Parameters ─────────────────── v0.12.1
Installed MonteCarloMeasurements ─────── v0.9.5
Installed DataStructures ─────────────── v0.17.20
Updating `~/.julia/environments/v1.6/Project.toml`
[682df890] + Stan v6.0.8
Updating `~/.julia/environments/v1.6/Manifest.toml`
[79e6a3ab] + Adapt v2.0.2
[dce04be8] + ArgCheck v2.1.0
[9e28174c] + BinDeps v1.0.1
[336ed68f] + CSV v0.7.7
[324d7699] + CategoricalArrays v0.8.1
[34da2185] + Compat v3.13.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[adafc99b] + CpuId v0.2.2
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.6
[864edb3b] + DataStructures v0.17.20
[e2d170a0] + DataValueInterfaces v1.0.0
[31c24e10] + Distributions v0.23.9
[ffbed154] + DocStringExtensions v0.8.2
[e30172f5] + Documenter v0.25.1
[fdbdab4c] + ElasticArrays v1.2.4
[1a297f60] + FillArrays v0.9.2
[14197337] + GenericLinearAlgebra v0.2.4
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[1914dd2f] + MacroTools v0.5.5
[e1d29d7a] + Missings v0.4.3
[0987c9cc] + MonteCarloMeasurements v0.9.5
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.3.0
[90014a1f] + PDMats v0.10.0
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v1.0.10
[2dfb63ee] + PooledArrays v0.5.3
[1fd47b50] + QuadGK v2.4.0
[3cdcf5f2] + RecipesBase v1.0.2
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[21efa798] + SIMDPirates v0.8.24
[476501e8] + SLEEFPirates v0.5.5
[91c51154] + SentinelArrays v1.2.10
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[682df890] + Stan v6.0.8
[d0ee94f6] + StanBase v2.0.8
[fb13fc95] + StanDiagnose v2.0.3
[9713c8f3] + StanDump v0.2.0
[fbd8da12] + StanOptimize v2.0.4
[c1514b29] + StanSample v2.1.7
[52d0d7a9] + StanSamples v0.1.0
[6ede68ce] + StanVariational v2.0.4
[90137ffa] + StaticArrays v0.12.4
[2913bbd2] + StatsBase v0.33.0
[4c63d2b9] + StatsFuns v0.9.5
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.5
[30578b45] + URIParser v0.4.1
[3a884ed6] + UnPack v1.0.1
[3d5dd08c] + VectorizationBase v0.12.31
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building SLEEFPirates → `~/.julia/packages/SLEEFPirates/jGsib/deps/build.log`
Testing Stan
Status `/tmp/jl_Rf7Shy/Project.toml`
[a93c6f00] DataFrames v0.21.6
[ffbed154] DocStringExtensions v0.8.2
[682df890] Stan v6.0.8
[d0ee94f6] StanBase v2.0.8
[fb13fc95] StanDiagnose v2.0.3
[fbd8da12] StanOptimize v2.0.4
[c1514b29] StanSample v2.1.7
[6ede68ce] StanVariational v2.0.4
[9a3f8284] Random
[8dfed614] Test
Status `/tmp/jl_Rf7Shy/Manifest.toml`
[79e6a3ab] Adapt v2.0.2
[dce04be8] ArgCheck v2.1.0
[9e28174c] BinDeps v1.0.1
[336ed68f] CSV v0.7.7
[324d7699] CategoricalArrays v0.8.1
[34da2185] Compat v3.13.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[adafc99b] CpuId v0.2.2
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.6
[864edb3b] DataStructures v0.17.20
[e2d170a0] DataValueInterfaces v1.0.0
[31c24e10] Distributions v0.23.9
[ffbed154] DocStringExtensions v0.8.2
[e30172f5] Documenter v0.25.1
[fdbdab4c] ElasticArrays v1.2.4
[1a297f60] FillArrays v0.9.2
[14197337] GenericLinearAlgebra v0.2.4
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[1914dd2f] MacroTools v0.5.5
[e1d29d7a] Missings v0.4.3
[0987c9cc] MonteCarloMeasurements v0.9.5
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.3.0
[90014a1f] PDMats v0.10.0
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v1.0.10
[2dfb63ee] PooledArrays v0.5.3
[1fd47b50] QuadGK v2.4.0
[3cdcf5f2] RecipesBase v1.0.2
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[21efa798] SIMDPirates v0.8.24
[476501e8] SLEEFPirates v0.5.5
[91c51154] SentinelArrays v1.2.10
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[682df890] Stan v6.0.8
[d0ee94f6] StanBase v2.0.8
[fb13fc95] StanDiagnose v2.0.3
[9713c8f3] StanDump v0.2.0
[fbd8da12] StanOptimize v2.0.4
[c1514b29] StanSample v2.1.7
[52d0d7a9] StanSamples v0.1.0
[6ede68ce] StanVariational v2.0.4
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.33.0
[4c63d2b9] StatsFuns v0.9.5
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.5
[30578b45] URIParser v0.4.1
[3a884ed6] UnPack v1.0.1
[3d5dd08c] VectorizationBase v0.12.31
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Running Stan.jl v6.x test examples
* Examples/Bernoulli/bernoulli.jl *
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/L6Wfg/src/StanBase.jl:73
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/L6Wfg/src/StanBase.jl:73
/tmp/jl_erc7iq/bernoulli.stan updated.
ERROR: LoadError: LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanBase.var"#1#2")()
@ StanBase ~/.julia/packages/StanBase/L6Wfg/src/stanmodel/cmdstan_home.jl:15
[2] (::Base.var"#483#484"{StanBase.var"#1#2"})(k::String)
@ Base ./env.jl:81
[3] access_env
@ ./env.jl:43 [inlined]
[4] get
@ ./env.jl:81 [inlined]
[5] get_cmdstan_home
@ ~/.julia/packages/StanBase/L6Wfg/src/stanmodel/cmdstan_home.jl:14 [inlined]
[6] SampleModel(name::String, model::String, n_chains::Vector{Int64}; seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String, method::StanSample.Sample)
@ StanSample ~/.julia/packages/StanSample/OIgCu/src/stanmodel/SampleModel.jl:58
[7] top-level scope
@ ~/.julia/packages/Stan/K6WTt/test/Examples/Bernoulli/bernoulli.jl:21
[8] include(fname::String)
@ Base.MainInclude ./client.jl:443
[9] (::var"#1#2"{String})()
@ Main ~/.julia/packages/Stan/K6WTt/test/runtests.jl:38
[10] cd(f::var"#1#2"{String}, dir::String)
@ Base.Filesystem ./file.jl:104
[11] top-level scope
@ ~/.julia/packages/Stan/K6WTt/test/runtests.jl:37
[12] include(fname::String)
@ Base.MainInclude ./client.jl:443
[13] top-level scope
@ none:6
in expression starting at /home/pkgeval/.julia/packages/Stan/K6WTt/test/Examples/Bernoulli/bernoulli.jl:21
in expression starting at /home/pkgeval/.julia/packages/Stan/K6WTt/test/runtests.jl:34
ERROR: Package Stan errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N)
@ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1567
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:328
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:315
[5] #test#62
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[6] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[7] #test#61
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:16