1.6.0-DEV-03e1a89ff1.log

Julia Version 1.6.0-DEV.633
Commit 03e1a89ff1 (2020-08-13 14:37 UTC)
Platform Info:
  OS: Linux (x86_64-pc-linux-gnu)
  CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
  JULIA_DEPOT_PATH = ::/usr/local/share/julia
  JULIA_NUM_THREADS = 2

  Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
  Installed StableRNGs ────────── v0.1.1
  Installed BGZFStreams ───────── v0.3.0
  Installed Combinatorics ─────── v1.0.2
  Installed OrderedCollections ── v1.3.0
  Installed BufferedStreams ───── v1.0.0
  Installed IntervalTrees ─────── v1.0.0
  Installed Indexes ───────────── v0.1.1
  Installed XAM ───────────────── v0.2.6
  Installed YAML ──────────────── v0.4.0
  Installed CodecZlib ─────────── v0.7.0
  Installed IndexableBitVectors ─ v1.0.0
  Installed Compat ────────────── v3.13.0
  Installed Automa ────────────── v0.8.0
  Installed GenomicFeatures ───── v2.0.3
  Installed BioAlignments ─────── v2.0.0
  Installed BioSequences ──────── v2.0.5
  Installed Zlib_jll ──────────── v1.2.11+15
  Installed TranscodingStreams ── v0.9.5
  Installed Twiddle ───────────── v1.1.2
  Installed BioGenerics ───────── v0.1.0
  Installed BioCore ───────────── v2.0.5
  Installed BioSymbols ────────── v4.0.4
  Installed DataStructures ────── v0.17.20
Updating `~/.julia/environments/v1.6/Project.toml`
  [d759349c] + XAM v0.2.6
Updating `~/.julia/environments/v1.6/Manifest.toml`
  [67c07d97] + Automa v0.8.0
  [28d598bf] + BGZFStreams v0.3.0
  [00701ae9] + BioAlignments v2.0.0
  [37cfa864] + BioCore v2.0.5
  [47718e42] + BioGenerics v0.1.0
  [7e6ae17a] + BioSequences v2.0.5
  [3c28c6f8] + BioSymbols v4.0.4
  [e1450e63] + BufferedStreams v1.0.0
  [944b1d66] + CodecZlib v0.7.0
  [861a8166] + Combinatorics v1.0.2
  [34da2185] + Compat v3.13.0
  [864edb3b] + DataStructures v0.17.20
  [899a7d2d] + GenomicFeatures v2.0.3
  [1cb3b9ac] + IndexableBitVectors v1.0.0
  [4ffb77ac] + Indexes v0.1.1
  [524e6230] + IntervalTrees v1.0.0
  [bac558e1] + OrderedCollections v1.3.0
  [860ef19b] + StableRNGs v0.1.1
  [3bb67fe8] + TranscodingStreams v0.9.5
  [7200193e] + Twiddle v1.1.2
  [d759349c] + XAM v0.2.6
  [ddb6d928] + YAML v0.4.0
  [83775a58] + Zlib_jll v1.2.11+15
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8bb1440f] + DelimitedFiles
  [8ba89e20] + Distributed
  [b77e0a4c] + InteractiveUtils
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [44cfe95a] + Pkg
  [de0858da] + Printf
  [9abbd945] + Profile
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA
  [9e88b42a] + Serialization
  [1a1011a3] + SharedArrays
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays
  [10745b16] + Statistics
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
    Testing XAM
Status `/tmp/jl_Yq7Lye/Project.toml`
  [67c07d97] Automa v0.8.0
  [28d598bf] BGZFStreams v0.3.0
  [00701ae9] BioAlignments v2.0.0
  [47718e42] BioGenerics v0.1.0
  [7e6ae17a] BioSequences v2.0.5
  [3372ea36] FormatSpecimens v1.0.1
  [899a7d2d] GenomicFeatures v2.0.3
  [4ffb77ac] Indexes v0.1.1
  [3bb67fe8] TranscodingStreams v0.9.5
  [d759349c] XAM v0.2.6
  [de0858da] Printf
  [8dfed614] Test
Status `/tmp/jl_Yq7Lye/Manifest.toml`
  [67c07d97] Automa v0.8.0
  [28d598bf] BGZFStreams v0.3.0
  [00701ae9] BioAlignments v2.0.0
  [37cfa864] BioCore v2.0.5
  [47718e42] BioGenerics v0.1.0
  [7e6ae17a] BioSequences v2.0.5
  [3c28c6f8] BioSymbols v4.0.4
  [e1450e63] BufferedStreams v1.0.0
  [944b1d66] CodecZlib v0.7.0
  [861a8166] Combinatorics v1.0.2
  [34da2185] Compat v3.13.0
  [864edb3b] DataStructures v0.17.20
  [3372ea36] FormatSpecimens v1.0.1
  [899a7d2d] GenomicFeatures v2.0.3
  [1cb3b9ac] IndexableBitVectors v1.0.0
  [4ffb77ac] Indexes v0.1.1
  [524e6230] IntervalTrees v1.0.0
  [bac558e1] OrderedCollections v1.3.0
  [860ef19b] StableRNGs v0.1.1
  [3bb67fe8] TranscodingStreams v0.9.5
  [7200193e] Twiddle v1.1.2
  [d759349c] XAM v0.2.6
  [ddb6d928] YAML v0.4.0
  [83775a58] Zlib_jll v1.2.11+15
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8bb1440f] DelimitedFiles
  [8ba89e20] Distributed
  [b77e0a4c] InteractiveUtils
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [44cfe95a] Pkg
  [de0858da] Printf
  [9abbd945] Profile
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA
  [9e88b42a] Serialization
  [1a1011a3] SharedArrays
  [6462fe0b] Sockets
  [2f01184e] SparseArrays
  [10745b16] Statistics
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
[ Info: Compiling bit-parallel GC counter for LongSequence{<:NucleicAcidAlphabet}
[ Info: Compiling bit-parallel mismatch counter for LongSequence{<:NucleicAcidAlphabet}
[ Info: Compiling bit-parallel match counter for LongSequence{<:NucleicAcidAlphabet}
[ Info: Compiling bit-parallel ambiguity counter...
[ Info: 	For a single LongSequence{<:NucleicAcidAlphabet}
[ Info: 	For a pair of LongSequence{<:NucleicAcidAlphabet}s
[ Info: Compiling bit-parallel certainty counter for LongSequence{<:NucleicAcidAlphabet}
[ Info: Compiling bit-parallel gap counter for LongSequence{<:NucleicAcidAlphabet}
Test Summary: | Pass  Total
SAM           |  122    122
Test Summary: | Pass  Total
BAM           |  172    172
    Testing XAM tests passed