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1.6.0-DEV-9392bbe347.log
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Julia Version 1.6.0-DEV.1122
Commit 9392bbe347 (2020-10-03 14:15 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: AMD EPYC 7502 32-Core Processor
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, znver2)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed SortingAlgorithms ──────────── v0.3.1
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed Missings ───────────────────── v0.4.4
Installed ApproxBayes ────────────────── v0.3.2
Installed StatsFuns ──────────────────── v0.9.5
Installed QuadGK ─────────────────────── v2.4.1
Installed StaticArrays ───────────────── v0.12.4
Installed Distributions ──────────────── v0.23.12
Installed PDMats ─────────────────────── v0.10.1
Installed Rmath ──────────────────────── v0.6.1
Installed FillArrays ─────────────────── v0.9.6
Installed Compat ─────────────────────── v3.18.0
Installed DataAPI ────────────────────── v1.3.0
Installed StatsBase ──────────────────── v0.33.1
Installed OrderedCollections ─────────── v1.3.1
Installed DataStructures ─────────────── v0.18.6
Installed Distances ──────────────────── v0.9.1
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed RecipesBase ────────────────── v1.1.0
Installed ProgressMeter ──────────────── v1.4.0
Installed SpecialFunctions ───────────── v0.10.3
Updating `~/.julia/environments/v1.6/Project.toml`
[f5f396d3] + ApproxBayes v0.3.2
Updating `~/.julia/environments/v1.6/Manifest.toml`
[f5f396d3] + ApproxBayes v0.3.2
[34da2185] + Compat v3.18.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] + DataAPI v1.3.0
[864edb3b] + DataStructures v0.18.6
[b4f34e82] + Distances v0.9.1
[31c24e10] + Distributions v0.23.12
[1a297f60] + FillArrays v0.9.6
[e1d29d7a] + Missings v0.4.4
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.3.1
[90014a1f] + PDMats v0.10.1
[92933f4c] + ProgressMeter v1.4.0
[1fd47b50] + QuadGK v2.4.1
[3cdcf5f2] + RecipesBase v1.1.0
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.4
[2913bbd2] + StatsBase v0.33.1
[4c63d2b9] + StatsFuns v0.9.5
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing ApproxBayes
Status `/tmp/jl_lARU20/Project.toml`
[f5f396d3] ApproxBayes v0.3.2
[b4f34e82] Distances v0.9.1
[31c24e10] Distributions v0.23.12
[91a5bcdd] Plots v1.6.8
[92933f4c] ProgressMeter v1.4.0
[3cdcf5f2] RecipesBase v1.1.0
[2913bbd2] StatsBase v0.33.1
[8bb1440f] DelimitedFiles
[de0858da] Printf
[9a3f8284] Random
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_lARU20/Manifest.toml`
[79e6a3ab] Adapt v2.3.0
[f5f396d3] ApproxBayes v0.3.2
[6e34b625] Bzip2_jll v1.0.6+4
[35d6a980] ColorSchemes v3.10.1
[3da002f7] ColorTypes v0.10.9
[5ae59095] Colors v0.12.4
[34da2185] Compat v3.18.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[d38c429a] Contour v0.5.5
[9a962f9c] DataAPI v1.3.0
[864edb3b] DataStructures v0.18.6
[e2d170a0] DataValueInterfaces v1.0.0
[b4f34e82] Distances v0.9.1
[31c24e10] Distributions v0.23.12
[5ae413db] EarCut_jll v2.1.5+0
[c87230d0] FFMPEG v0.4.0
[b22a6f82] FFMPEG_jll v4.3.1+2
[1a297f60] FillArrays v0.9.6
[53c48c17] FixedPointNumbers v0.8.4
[d7e528f0] FreeType2_jll v2.10.1+4
[559328eb] FriBidi_jll v1.0.5+5
[28b8d3ca] GR v0.52.0
[5c1252a2] GeometryBasics v0.3.1
[4d00f742] GeometryTypes v0.8.3
[42e2da0e] Grisu v1.0.0
[cd3eb016] HTTP v0.8.19
[83e8ac13] IniFile v0.5.0
[c8e1da08] IterTools v1.3.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.1
[c1c5ebd0] LAME_jll v3.100.0+2
[dd192d2f] LibVPX_jll v1.9.0+0
[739be429] MbedTLS v1.0.2
[c8ffd9c3] MbedTLS_jll v2.16.8+0
[442fdcdd] Measures v0.3.1
[e1d29d7a] Missings v0.4.4
[77ba4419] NaNMath v0.3.4
[e7412a2a] Ogg_jll v1.3.4+1
[458c3c95] OpenSSL_jll v1.1.1+5
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[91d4177d] Opus_jll v1.3.1+2
[bac558e1] OrderedCollections v1.3.1
[90014a1f] PDMats v0.10.1
[69de0a69] Parsers v1.0.10
[ccf2f8ad] PlotThemes v2.0.0
[995b91a9] PlotUtils v1.0.7
[91a5bcdd] Plots v1.6.8
[92933f4c] ProgressMeter v1.4.0
[1fd47b50] QuadGK v2.4.1
[3cdcf5f2] RecipesBase v1.1.0
[01d81517] RecipesPipeline v0.1.13
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.1.0
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[992d4aef] Showoff v0.3.2
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.33.1
[4c63d2b9] StatsFuns v0.9.5
[09ab397b] StructArrays v0.4.4
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.1.0
[83775a58] Zlib_jll v1.2.11+16
[0ac62f75] libass_jll v0.14.0+3
[f638f0a6] libfdk_aac_jll v0.1.6+3
[f27f6e37] libvorbis_jll v1.3.6+5
[1270edf5] x264_jll v2020.7.14+1
[dfaa095f] x265_jll v3.0.0+2
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
Running tests ...
* test_sampling.jl ...
0.832793 seconds (10.02 M allocations: 276.056 MiB, 9.27% gc time, 6.87% compilation time)
1.429878 seconds (10.01 M allocations: 302.883 MiB, 23.90% gc time, 2.10% compilation time)
* test_parameter.jl ...
Test parameters of normal distribution are inferred correctly (mean within 5% of true value)
Preparing to run in serial on 1 processor
Check ABC rejection algorithm correctly infers parameters
Check no errors arising from plotting
┌ Warning: Attribute alias `nbins` detected in the user recipe defined for the signature (::ApproxBayes.ABCrejectionresults). To ensure expected behavior it is recommended to use the default attribute `bins`.
└ @ Plots ~/.julia/packages/Plots/hyS17/src/pipeline.jl:15
Check no errors arising from printing results
#########################################
Number of simulations: 1.07e+05
Acceptance ratio: 9.32e-04
Median (95% intervals):
Parameter 1: 1.99 (1.92,2.07)
Parameter 2: 0.42 (0.30,0.54)
#########################################
Check output is written to file
Preparing to run in serial on 1 processor
Preparing to run in serial on 1 processor
Check ABC SMC algorithm correctly infers parameters
Check no errors arising from plotting
┌ Warning: Attribute alias `nbins` detected in the user recipe defined for the signature (::ApproxBayes.ABCSMCresults). To ensure expected behavior it is recommended to use the default attribute `bins`.
└ @ Plots ~/.julia/packages/Plots/hyS17/src/pipeline.jl:15
Check no errors arising from printing results
#########################################
Total number of simulations: 3.48e+03
Cumulative number of simulations = [100, 453, 738, 1225, 1584, 2203, 2760, 3478]
Acceptance ratio: 2.88e-02
Tolerance schedule = [1.0, 0.65, 0.35, 0.26, 0.15, 0.09, 0.06, 0.05]
Median (95% intervals):
Parameter 1: 1.99 (1.95,2.04)
Parameter 2: 0.40 (0.35,0.46)
#########################################
Check output is written to file
Check ABC SMC algorithm correctly infers parameters with gaussian perturbation kernel
Check ABC SMC is more efficient than ABC rejection
Preparing to run in serial on 1 processor
Preparing to run in serial on 1 processor
Preparing to run in serial on 1 processor
┌ Warning: Only accepted 0 particles with ϵ < 0.1.
│ You may want to increase ϵ or increase maxiterations.
│ Resorting to taking the 100 particles with smallest distance
└ @ ApproxBayes ~/.julia/packages/ApproxBayes/RZWxX/src/ABCalgorithm.jl:85
Preparing to run in serial on 1 processor
Preparing to run in serial on 1 processor
Total number of simulations: 2.65e+03
Cumulative number of simulations = [100, 407, 637, 949, 1356, 1727, 2174, 2650]
Acceptance ratio: 3.77e-02
Tolerance schedule = [1.0, 0.72, 0.42, 0.24, 0.16, 0.09, 0.05, 0.05]
Median (95% intervals):
Parameter 1: 1.99 (1.95,2.03)
Parameter 2: 0.39 (0.35,0.46)
Check ABC SMC algorithm with gaussian perturbation kernel correctly infers parameters
* test_parameter_parallel.jl ...
Test parameters of normal distribution are inferred correctly (mean within 5% of true value)
Preparing to run in parallel on 2 processors
Check ABC rejection algorithm correctly infers parameters
Check no errors arising from plotting
┌ Warning: Attribute alias `nbins` detected in the user recipe defined for the signature (::ApproxBayes.ABCrejectionresults). To ensure expected behavior it is recommended to use the default attribute `bins`.
└ @ Plots ~/.julia/packages/Plots/hyS17/src/pipeline.jl:15
Check no errors arising from printing results
#########################################
Number of simulations: 1.24e+05
Acceptance ratio: 8.08e-04
Median (95% intervals):
Parameter 1: 1.99 (1.91,2.07)
Parameter 2: 0.41 (0.30,0.55)
#########################################
Check output is written to file
Preparing to run in parallel on 2 processors
Preparing to run in parallel on 2 processors
Check ABC SMC algorithm correctly infers parameters
Check no errors arising from plotting
┌ Warning: Attribute alias `nbins` detected in the user recipe defined for the signature (::ApproxBayes.ABCSMCresults). To ensure expected behavior it is recommended to use the default attribute `bins`.
└ @ Plots ~/.julia/packages/Plots/hyS17/src/pipeline.jl:15
Check no errors arising from printing results
#########################################
Total number of simulations: 3.66e+03
Cumulative number of simulations = [102, 430, 833, 1223, 1729, 2333, 2971, 3661]
Acceptance ratio: 2.73e-02
Tolerance schedule = [1.0, 0.67, 0.4, 0.25, 0.15, 0.09, 0.06, 0.05]
Median (95% intervals):
Parameter 1: 1.99 (1.95,2.03)
Parameter 2: 0.41 (0.35,0.46)
#########################################
Check output is written to file
Check ABC SMC is more efficient than ABC rejection
Preparing to run in parallel on 2 processors
Preparing to run in parallel on 2 processors
Preparing to run in parallel on 2 processors
┌ Warning: Only accepted 0 particles with ϵ < 0.1.
│ You may want to increase ϵ or increase maxiterations.
│ Resorting to taking the 100 particles with smallest distance
└ @ ApproxBayes ~/.julia/packages/ApproxBayes/RZWxX/src/ABCalgorithm.jl:85
Check ABC SMC when epsilon is small and maxiterations small
Preparing to run in parallel on 2 processors
Preparing to run in parallel on 2 processors
* test_bayesfactor.jl ...
Test Bayes factors are calculated correctly (within 5% of true value)
Checking ABC SMC model selection
19.119140 seconds (20.88 M allocations: 2.030 GiB, 2.22% gc time, 76.26% compilation time)
Checking ABC rejection model selection
80.320588 seconds (53.67 M allocations: 8.490 GiB, 2.57% gc time, 1.88% compilation time)
Check no errors arising from plotting
┌ Warning: Attribute alias `nbins` detected in the user recipe defined for the signature (::ApproxBayes.ABCSMCmodelresults, ::Int64). To ensure expected behavior it is recommended to use the default attribute `bins`.
└ @ Plots ~/.julia/packages/Plots/hyS17/src/pipeline.jl:15
┌ Warning: Attribute alias `nbins` detected in the user recipe defined for the signature (::ApproxBayes.ABCrejectionmodelresults, ::Int64). To ensure expected behavior it is recommended to use the default attribute `bins`.
└ @ Plots ~/.julia/packages/Plots/hyS17/src/pipeline.jl:15
* test_util.jl ...
202.484466 seconds (178.04 M allocations: 45.175 GiB, 4.57% gc time, 29.41% compilation time)
Testing ApproxBayes tests passed