From 76914b44ec1056e8b714af4b306edbc59984d511 Mon Sep 17 00:00:00 2001 From: Jeff Fessler Date: Sun, 13 Nov 2022 14:06:22 -0500 Subject: [PATCH] Move links to JuliaImageRecon --- README.md | 18 +++++++++--------- docs/lit/examples/1-overview.jl | 2 +- docs/lit/examples/2-rotate.jl | 2 +- docs/lit/examples/3-psf.jl | 2 +- docs/lit/examples/4-mlem.jl | 2 +- docs/lit/examples/5-2d.jl | 2 +- docs/lit/examples/6-dl.jl | 4 ++-- docs/lit/examples/7-osem.jl | 2 +- docs/make.jl | 2 +- docs/src/index.md | 2 +- 10 files changed, 19 insertions(+), 19 deletions(-) diff --git a/README.md b/README.md index 5e46f6c5..10f49ae9 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ # SPECTrecon SPECT image reconstruction tools in Julia -https://github.com/JeffFessler/SPECTrecon.jl +https://github.com/JuliaImageRecon/SPECTrecon.jl [![action status][action-img]][action-url] [![pkgeval status][pkgeval-img]][pkgeval-url] @@ -34,20 +34,20 @@ or similar frameworks. Tested with Julia ≥ 1.6. -[action-img]: https://github.com/JeffFessler/SPECTrecon.jl/workflows/CI/badge.svg -[action-url]: https://github.com/JeffFessler/SPECTrecon.jl/actions -[build-img]: https://github.com/JeffFessler/SPECTrecon.jl/workflows/CI/badge.svg?branch=main -[build-url]: https://github.com/JeffFessler/SPECTrecon.jl/actions?query=workflow%3ACI+branch%3Amain +[action-img]: https://github.com/JuliaImageRecon/SPECTrecon.jl/workflows/CI/badge.svg +[action-url]: https://github.com/JuliaImageRecon/SPECTrecon.jl/actions +[build-img]: https://github.com/JuliaImageRecon/SPECTrecon.jl/workflows/CI/badge.svg?branch=main +[build-url]: https://github.com/JuliaImageRecon/SPECTrecon.jl/actions?query=workflow%3ACI+branch%3Amain [pkgeval-img]: https://juliaci.github.io/NanosoldierReports/pkgeval_badges/S/SPECTrecon.svg [pkgeval-url]: https://juliaci.github.io/NanosoldierReports/pkgeval_badges/S/SPECTrecon.html [code-blue-img]: https://img.shields.io/badge/code%20style-blue-4495d1.svg [code-blue-url]: https://github.com/invenia/BlueStyle -[codecov-img]: https://codecov.io/github/JeffFessler/SPECTrecon.jl/coverage.svg?branch=main -[codecov-url]: https://codecov.io/github/JeffFessler/SPECTrecon.jl?branch=main +[codecov-img]: https://codecov.io/github/JuliaImageRecon/SPECTrecon.jl/coverage.svg?branch=main +[codecov-url]: https://codecov.io/github/JuliaImageRecon/SPECTrecon.jl?branch=main [docs-stable-img]: https://img.shields.io/badge/docs-stable-blue.svg -[docs-stable-url]: https://JeffFessler.github.io/SPECTrecon.jl/stable +[docs-stable-url]: https://JuliaImageRecon.github.io/SPECTrecon.jl/stable [docs-dev-img]: https://img.shields.io/badge/docs-dev-blue.svg -[docs-dev-url]: https://JeffFessler.github.io/SPECTrecon.jl/dev +[docs-dev-url]: https://JuliaImageRecon.github.io/SPECTrecon.jl/dev [license-img]: http://img.shields.io/badge/license-MIT-brightgreen.svg?style=flat [license-url]: LICENSE [colprac-img]: https://img.shields.io/badge/ColPrac-Contributor's%20Guide-blueviolet diff --git a/docs/lit/examples/1-overview.jl b/docs/lit/examples/1-overview.jl index 38c14740..1d69f630 100644 --- a/docs/lit/examples/1-overview.jl +++ b/docs/lit/examples/1-overview.jl @@ -3,7 +3,7 @@ #--------------------------------------------------------- # This page gives an overview of the Julia package -# [`SPECTrecon`](https://github.com/JeffFessler/SPECTrecon.jl). +# [`SPECTrecon`](https://github.com/JuliaImageRecon/SPECTrecon.jl). # ### Setup diff --git a/docs/lit/examples/2-rotate.jl b/docs/lit/examples/2-rotate.jl index d2d4af2b..9d5c6be0 100644 --- a/docs/lit/examples/2-rotate.jl +++ b/docs/lit/examples/2-rotate.jl @@ -3,7 +3,7 @@ #--------------------------------------------------------- # This page explains the image rotation portion of the Julia package -# [`SPECTrecon.jl`](https://github.com/JeffFessler/SPECTrecon.jl). +# [`SPECTrecon.jl`](https://github.com/JuliaImageRecon/SPECTrecon.jl). # ### Setup diff --git a/docs/lit/examples/3-psf.jl b/docs/lit/examples/3-psf.jl index 81e4fc57..e7a0dff8 100644 --- a/docs/lit/examples/3-psf.jl +++ b/docs/lit/examples/3-psf.jl @@ -3,7 +3,7 @@ #--------------------------------------------------------- # This page explains the PSF portion of the Julia package -# [`SPECTrecon.jl`](https://github.com/JeffFessler/SPECTrecon.jl). +# [`SPECTrecon.jl`](https://github.com/JuliaImageRecon/SPECTrecon.jl). # ### Setup diff --git a/docs/lit/examples/4-mlem.jl b/docs/lit/examples/4-mlem.jl index c743a4ea..607d5ad2 100644 --- a/docs/lit/examples/4-mlem.jl +++ b/docs/lit/examples/4-mlem.jl @@ -3,7 +3,7 @@ #--------------------------------------------------------- # This page illustrates ML-EM reconstruction with the Julia package -# [`SPECTrecon`](https://github.com/JeffFessler/SPECTrecon.jl). +# [`SPECTrecon`](https://github.com/JuliaImageRecon/SPECTrecon.jl). # ### Setup diff --git a/docs/lit/examples/5-2d.jl b/docs/lit/examples/5-2d.jl index ce9ad927..5229e476 100644 --- a/docs/lit/examples/5-2d.jl +++ b/docs/lit/examples/5-2d.jl @@ -4,7 +4,7 @@ # This page describes how to perform 2D SPECT forward and back-projection # using the Julia package -# [`SPECTrecon`](https://github.com/JeffFessler/SPECTrecon.jl). +# [`SPECTrecon`](https://github.com/JuliaImageRecon/SPECTrecon.jl). # ### Setup diff --git a/docs/lit/examples/6-dl.jl b/docs/lit/examples/6-dl.jl index d8dcfd26..22b35925 100644 --- a/docs/lit/examples/6-dl.jl +++ b/docs/lit/examples/6-dl.jl @@ -5,7 +5,7 @@ #= This page describes how to end-to-end train unrolled deep learning algorithms using the Julia package -[`SPECTrecon`](https://github.com/JeffFessler/SPECTrecon.jl). +[`SPECTrecon`](https://github.com/JuliaImageRecon/SPECTrecon.jl). This page was generated from a single Julia file: [6-dl.jl](@__REPO_ROOT_URL__/6-dl.jl). @@ -262,7 +262,7 @@ So for now it is just fenced off with `isinteractive()`. =# if isinteractive() - url = "https://github.com/JeffFessler/SPECTrecon.jl/blob/main/data/trained-cnn-example-6-dl.bson?raw=true" + url = "https://github.com/JuliaImageRecon/SPECTrecon.jl/blob/main/data/trained-cnn-example-6-dl.bson?raw=true" tmp = tempname() Downloads.download(url, tmp) cnn = BSON.load(tmp)[:cnn] diff --git a/docs/lit/examples/7-osem.jl b/docs/lit/examples/7-osem.jl index d4ee113a..b291fd1b 100644 --- a/docs/lit/examples/7-osem.jl +++ b/docs/lit/examples/7-osem.jl @@ -6,7 +6,7 @@ This page illustrates Ordered-subset expectation-maximization (OS-EM) image reconstruction with the Julia package -[`SPECTrecon`](https://github.com/JeffFessler/SPECTrecon.jl). +[`SPECTrecon`](https://github.com/JuliaImageRecon/SPECTrecon.jl). =# # ### Setup diff --git a/docs/make.jl b/docs/make.jl index 2edcd952..0934b3cd 100644 --- a/docs/make.jl +++ b/docs/make.jl @@ -1,6 +1,6 @@ execute = isempty(ARGS) || ARGS[1] == "run" -org, reps = :JeffFessler, :SPECTrecon +org, reps = :JuliaImageRecon, :SPECTrecon eval(:(using $reps)) using Documenter using Literate diff --git a/docs/src/index.md b/docs/src/index.md index dff45ef2..38d7aa9b 100644 --- a/docs/src/index.md +++ b/docs/src/index.md @@ -2,7 +2,7 @@ CurrentModule = SPECTrecon ``` -# Documentation for [SPECTrecon](https://github.com/JeffFessler/SPECTrecon.jl) +# Documentation for [SPECTrecon](https://github.com/JuliaImageRecon/SPECTrecon.jl) ## Overview