load RCall at Remote Julia of Atom

[hanbinlu]

Hi,

I could load the RCall in Julia REPL running inside the terminal which has export LD_LIBRARY_PATH="/home/software/R-3.6.1/lib/" in the .bashrc. However, when I use Atom to connect to the same remote Julia, the session seems not be able to use the env variable of the shell. So it could not load the lib.

ERROR: InitError: error compiling __init__: error compiling initEmbeddedR: could not load library "/home/software/R-3.6.1/lib/libR.so" libRblas.so: cannot open shared object file: No such file or directory

Manually setting the LD_LIBRARY_PATH in the Julia or setting the ENV["LD_LIBRARY_PATH"] in the .juliarc.jl from startup both did not fix the problem.

What should I do? Thank you very much for your help.

[hanbinlu]

I've figured out a workaround reference to the #268. According to that, the LD_LIBRARY_PATH need to be set before startup.

Atom:
Go to Julia Client setting to put the julia start command as

Jupyter/Hydrogen:
Edit the kernel.json file to add the env options. In my system, vim ~/.local/share/jupyter/kernels/julia-1.1/kernel.json