bconn_ext.ipynb

{
  "nbformat": 4,
  "nbformat_minor": 0,
  "metadata": {
    "colab": {
      "provenance": [],
      "authorship_tag": "ABX9TyNMAnoAgzuoLa2WlQHJ1q0O",
      "include_colab_link": true
    },
    "kernelspec": {
      "name": "python3",
      "display_name": "Python 3"
    },
    "language_info": {
      "name": "python"
    }
  },
  "cells": [
    {
      "cell_type": "markdown",
      "metadata": {
        "id": "view-in-github",
        "colab_type": "text"
      },
      "source": [
        "<a href=\"https://colab.research.google.com/github/Karanveer2202/NER/blob/main/bconn_ext.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 3,
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "ldF5VioH4HA2",
        "outputId": "c10580b3-608c-4a53-ae68-87da395cab2d"
      },
      "outputs": [
        {
          "output_type": "stream",
          "name": "stdout",
          "text": [
            "Collecting sklearn-crfsuite\n",
            "  Downloading sklearn_crfsuite-0.3.6-py2.py3-none-any.whl (12 kB)\n",
            "Collecting python-crfsuite>=0.8.3 (from sklearn-crfsuite)\n",
            "  Downloading python_crfsuite-0.9.9-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (993 kB)\n",
            "\u001b[2K     \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m993.5/993.5 kB\u001b[0m \u001b[31m12.6 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n",
            "\u001b[?25hRequirement already satisfied: six in /usr/local/lib/python3.10/dist-packages (from sklearn-crfsuite) (1.16.0)\n",
            "Requirement already satisfied: tabulate in /usr/local/lib/python3.10/dist-packages (from sklearn-crfsuite) (0.9.0)\n",
            "Requirement already satisfied: tqdm>=2.0 in /usr/local/lib/python3.10/dist-packages (from sklearn-crfsuite) (4.66.1)\n",
            "Installing collected packages: python-crfsuite, sklearn-crfsuite\n",
            "Successfully installed python-crfsuite-0.9.9 sklearn-crfsuite-0.3.6\n"
          ]
        }
      ],
      "source": [
        "pip install sklearn-crfsuite\n"
      ]
    },
    {
      "cell_type": "code",
      "source": [
        "import xml.etree.ElementTree as ET\n",
        "\n",
        "def parse_xml(file_path):\n",
        "    tree = ET.parse(file_path)\n",
        "    root = tree.getroot()\n",
        "\n",
        "    sentences = []\n",
        "\n",
        "    for doc in root.findall('.//document'):\n",
        "        for sent in doc.findall('.//sentence'):\n",
        "            sent_text = sent.get('text')\n",
        "            entities = {entity.get('id'): entity.get('text') for entity in sent.findall('.//entity')}\n",
        "\n",
        "            # Tokenize the sentence text here as per your requirement\n",
        "            tokens = sent_text.split()  # This is a simplistic tokenizer\n",
        "\n",
        "            # Create a list of (word, label) tuples\n",
        "            labeled_tokens = []\n",
        "            for token in tokens:\n",
        "                label = 'O'  # Default label\n",
        "                for entity_id, entity_text in entities.items():\n",
        "                    if entity_text in token:\n",
        "                        label = 'B-Individual_protein'  # Replace with actual entity type\n",
        "                        break\n",
        "                labeled_tokens.append((token, label))\n",
        "\n",
        "            sentences.append(labeled_tokens)\n",
        "\n",
        "    return sentences\n",
        "\n",
        "file_path = '/content/WhiteTextNegFixFull.xml'  # Replace with your XML file path\n",
        "sentences = parse_xml(file_path)"
      ],
      "metadata": {
        "id": "25Uvfknc9Ort"
      },
      "execution_count": 5,
      "outputs": []
    },
    {
      "cell_type": "code",
      "source": [
        "import sklearn_crfsuite\n",
        "from sklearn_crfsuite import metrics\n",
        "\n",
        "def word2features(sent, i):\n",
        "    word = sent[i][0]\n",
        "    features = {\n",
        "        'bias': 1.0,\n",
        "        'word.lower()': word.lower(),\n",
        "        'word[-3:]': word[-3:],\n",
        "        'word[-2:]': word[-2:],\n",
        "        'word.isupper()': word.isupper(),\n",
        "        'word.istitle()': word.istitle(),\n",
        "        'word.isdigit()': word.isdigit(),\n",
        "    }\n",
        "    if i > 0:\n",
        "        word1 = sent[i-1][0]\n",
        "        features.update({\n",
        "            '-1:word.lower()': word1.lower(),\n",
        "            '-1:word.istitle()': word1.istitle(),\n",
        "            '-1:word.isupper()': word1.isupper(),\n",
        "        })\n",
        "    else:\n",
        "        features['BOS'] = True\n",
        "\n",
        "    if i < len(sent)-1:\n",
        "        word1 = sent[i+1][0]\n",
        "        features.update({\n",
        "            '+1:word.lower()': word1.lower(),\n",
        "            '+1:word.istitle()': word1.istitle(),\n",
        "            '+1:word.isupper()': word1.isupper(),\n",
        "        })\n",
        "    else:\n",
        "        features['EOS'] = True\n",
        "\n",
        "    return features\n",
        "\n",
        "def sent2features(sent):\n",
        "    return [word2features(sent, i) for i in range(len(sent))]\n",
        "\n",
        "def sent2labels(sent):\n",
        "    return [label for token, label in sent]\n",
        "\n",
        "# Example: Load your data here\n",
        "\n",
        "# Split data into training and test sets (customize this according to your data)\n",
        "train_sents = sentences[:int(len(sentences) * 0.8)]\n",
        "test_sents = sentences[int(len(sentences) * 0.8):]\n",
        "\n",
        "X_train = [sent2features(s) for s in train_sents]\n",
        "y_train = [sent2labels(s) for s in train_sents]\n",
        "\n",
        "X_test = [sent2features(s) for s in test_sents]\n",
        "y_test = [sent2labels(s) for s in test_sents]\n",
        "\n",
        "# Train the CRF model\n",
        "crf = sklearn_crfsuite.CRF(\n",
        "    algorithm='lbfgs',\n",
        "    c1=0.1,\n",
        "    c2=0.1,\n",
        "    max_iterations=100,\n",
        "    all_possible_transitions=True\n",
        ")\n",
        "crf.fit(X_train, y_train)\n",
        "\n",
        "# Make predictions\n",
        "y_pred = crf.predict(X_test)\n",
        "\n",
        "# Evaluate the model\n",
        "print(metrics.flat_accuracy_score(y_test, y_pred))\n"
      ],
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "2aTBZxZr8kf0",
        "outputId": "9d41adc6-4aa4-465c-d2f3-326f279fd02d"
      },
      "execution_count": 6,
      "outputs": [
        {
          "output_type": "stream",
          "name": "stdout",
          "text": [
            "0.9835049979096195\n"
          ]
        }
      ]
    },
    {
      "cell_type": "code",
      "source": [
        "new_file_path = '/content/WhiteTextUnseenEval.xml'\n",
        "new_sentences = parse_xml(new_file_path)"
      ],
      "metadata": {
        "id": "qzDzRjyi_xCE"
      },
      "execution_count": 7,
      "outputs": []
    },
    {
      "cell_type": "code",
      "source": [
        "X_new = [sent2features(s) for s in new_sentences]"
      ],
      "metadata": {
        "id": "AIDvj0OvBDa6"
      },
      "execution_count": 8,
      "outputs": []
    },
    {
      "cell_type": "code",
      "source": [
        "new_predictions = crf.predict(X_new)"
      ],
      "metadata": {
        "id": "TVjBFrKYA1cK"
      },
      "execution_count": 9,
      "outputs": []
    },
    {
      "cell_type": "code",
      "source": [
        "# Iterate over all sentences and their predictions\n",
        "for sentence, predicted_labels in zip(new_sentences, new_predictions):\n",
        "    for word, prediction in zip(sentence, predicted_labels):\n",
        "        print(f\"{word[0]}: {prediction}\")\n",
        "    print(\"\\n--- End of Sentence ---\\n\")\n"
      ],
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "YhnpXphpBGSO",
        "outputId": "44b7547c-9f37-437f-ce5a-fbf1b52e5b5f"
      },
      "execution_count": 10,
      "outputs": [
        {
          "output_type": "stream",
          "name": "stdout",
          "text": [
            "\u001b[1;30;43mStreaming output truncated to the last 5000 lines.\u001b[0m\n",
            "particular,: O\n",
            "efferent: O\n",
            "pathways: O\n",
            "from: O\n",
            "the: O\n",
            "granular: O\n",
            "layer: O\n",
            "(Intercalated: O\n",
            "nucleus: O\n",
            "of: O\n",
            "the: O\n",
            "hyperstriatum: O\n",
            "accessorium,: O\n",
            "IHA),: O\n",
            "supragranular: O\n",
            "layer: O\n",
            "(hyperstriatum: O\n",
            "accessorium,: O\n",
            "HA),: O\n",
            "and: O\n",
            "infragranular: O\n",
            "layers: O\n",
            "(hyperstriatum: O\n",
            "intercalatus: O\n",
            "superior: O\n",
            "and/or: O\n",
            "hyperstriatum: O\n",
            "dorsale,: O\n",
            "HIS/HD): O\n",
            "were: O\n",
            "investigated.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Furthermore,: O\n",
            "many: O\n",
            "acidic: O\n",
            "fibroblast: O\n",
            "growth: O\n",
            "factor(aFGF): O\n",
            "-positive: O\n",
            "cell: O\n",
            "bodies: O\n",
            "were: O\n",
            "found: O\n",
            "in: O\n",
            "the: O\n",
            "vestibular: O\n",
            "system: O\n",
            "and: O\n",
            "other: O\n",
            "structures: O\n",
            "projecting: O\n",
            "to: O\n",
            "the: O\n",
            "cerebellum,: B-Individual_protein\n",
            "in: O\n",
            "the: O\n",
            "deep: O\n",
            "cerebellar: O\n",
            "nuclei,: O\n",
            "in: O\n",
            "somatosensory: O\n",
            "structures: O\n",
            "of: O\n",
            "the: O\n",
            "medulla: O\n",
            "(i.e.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "retinal: B-Individual_protein\n",
            "expression: O\n",
            "of: O\n",
            "Hsp27: O\n",
            "correlates: O\n",
            "temporally: O\n",
            "with: O\n",
            "innervation: O\n",
            "of: O\n",
            "the: O\n",
            "tectum: B-Individual_protein\n",
            "by: O\n",
            "late-born: O\n",
            "retinal: B-Individual_protein\n",
            "ganglion: O\n",
            "cells(RGCs): O\n",
            "and: O\n",
            "with: O\n",
            "onset: O\n",
            "of: O\n",
            "spontaneous: O\n",
            "retinotectal: O\n",
            "activity.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "optokinetic: O\n",
            "nystagmus(OKN): O\n",
            "patterns: O\n",
            "of: O\n",
            "these: O\n",
            "mice: O\n",
            "fell: O\n",
            "into: O\n",
            "the: O\n",
            "following: O\n",
            "categories:: O\n",
            "(1): O\n",
            "wild: O\n",
            "type;: O\n",
            "(2): O\n",
            "field-restriction: O\n",
            "dependent: O\n",
            "optokinetic: O\n",
            "nystagmus(OKN): O\n",
            "with: O\n",
            "small: O\n",
            "following: O\n",
            "movements: O\n",
            "but: O\n",
            "no: O\n",
            "optokinetic: O\n",
            "nystagmus(OKN): O\n",
            "in: O\n",
            "response: O\n",
            "to: O\n",
            "full-field: O\n",
            "stimulation,: O\n",
            "normal: O\n",
            "optokinetic: O\n",
            "nystagmus(OKN): O\n",
            "in: O\n",
            "response: O\n",
            "to: O\n",
            "stimulation: O\n",
            "of: O\n",
            "the: O\n",
            "nasal: O\n",
            "retina,: O\n",
            "and: O\n",
            "optokinetic: O\n",
            "nystagmus(OKN): O\n",
            "of: O\n",
            "reversed: O\n",
            "direction: O\n",
            "in: O\n",
            "response: O\n",
            "to: O\n",
            "stimulation: O\n",
            "of: O\n",
            "the: O\n",
            "temporal: O\n",
            "retina;: O\n",
            "(3): O\n",
            "oblique: O\n",
            "with: O\n",
            "slow: O\n",
            "oblique: O\n",
            "following: O\n",
            "movements: O\n",
            "and: O\n",
            "reduced: O\n",
            "numbers: O\n",
            "of: O\n",
            "optokinetic: O\n",
            "nystagmus(OKN): O\n",
            "s: O\n",
            "with: O\n",
            "oblique: O\n",
            "quick: O\n",
            "phases: O\n",
            "in: O\n",
            "response: O\n",
            "to: O\n",
            "horizontally: O\n",
            "moving,: O\n",
            "full-field: O\n",
            "stimulation,: O\n",
            "nearly: O\n",
            "normal: O\n",
            "optokinetic: O\n",
            "nystagmus(OKN): O\n",
            "in: O\n",
            "response: O\n",
            "to: O\n",
            "stimulation: O\n",
            "of: O\n",
            "the: O\n",
            "nasal: O\n",
            "retina,: O\n",
            "and: O\n",
            "optokinetic: O\n",
            "nystagmus(OKN): O\n",
            "of: O\n",
            "reversed: O\n",
            "direction: O\n",
            "in: O\n",
            "response: O\n",
            "to: O\n",
            "stimulation: O\n",
            "of: O\n",
            "the: O\n",
            "temporal: O\n",
            "retina.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "most: O\n",
            "lateral: O\n",
            "zone: O\n",
            "sends: O\n",
            "fibers: O\n",
            "to: O\n",
            "the: O\n",
            "septal: O\n",
            "area.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "A: O\n",
            "large: O\n",
            "group: O\n",
            "of: O\n",
            "cells: O\n",
            "in: O\n",
            "the: O\n",
            "tegmentum: O\n",
            "dorsal: O\n",
            "and: O\n",
            "medial: O\n",
            "to: O\n",
            "the: O\n",
            "medial: O\n",
            "lemniscus: O\n",
            "shows: O\n",
            "continuity: O\n",
            "with: O\n",
            "the: O\n",
            "pars: O\n",
            "compacta,: O\n",
            "and: O\n",
            "has: O\n",
            "similar: O\n",
            "connections: O\n",
            "with: O\n",
            "the: O\n",
            "striatum.: B-Individual_protein\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Distribution,: O\n",
            "morphology,: O\n",
            "and: O\n",
            "synaptic: O\n",
            "targets: O\n",
            "of: O\n",
            "corticothalamic: O\n",
            "terminals: O\n",
            "in: O\n",
            "the: O\n",
            "cat: O\n",
            "lateral: O\n",
            "posterior-pulvinar: O\n",
            "complex: O\n",
            "that: O\n",
            "originate: O\n",
            "from: O\n",
            "the: O\n",
            "posteromedial: O\n",
            "lateral: O\n",
            "suprasylvian: O\n",
            "cortex.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "In: O\n",
            "conclusion,: O\n",
            "our: O\n",
            "results: O\n",
            "indicate: O\n",
            "that: O\n",
            "the: O\n",
            "origin: O\n",
            "of: O\n",
            "the: O\n",
            "driver: O\n",
            "inputs: O\n",
            "reaching: O\n",
            "the: O\n",
            "lateral: O\n",
            "posterior(LP): O\n",
            "nucleus: O\n",
            "is: O\n",
            "not: O\n",
            "restricted: O\n",
            "to: O\n",
            "the: O\n",
            "primary: O\n",
            "visual: O\n",
            "cortex: O\n",
            "and: O\n",
            "that: O\n",
            "extrastriate: O\n",
            "visual: O\n",
            "areas: O\n",
            "might: O\n",
            "also: O\n",
            "contribute: O\n",
            "to: O\n",
            "the: O\n",
            "basic: O\n",
            "organization: O\n",
            "of: O\n",
            "visual: O\n",
            "receptive: O\n",
            "fields: O\n",
            "of: O\n",
            "neurons: O\n",
            "in: O\n",
            "this: O\n",
            "higher: O\n",
            "order: O\n",
            "nucleus.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Injections: O\n",
            "of: O\n",
            "two: O\n",
            "fluorescent: O\n",
            "retrograde: O\n",
            "tracers: O\n",
            "into: O\n",
            "the: O\n",
            "mediodorsal: O\n",
            "nucleus: O\n",
            "of: O\n",
            "the: O\n",
            "thalamus: B-Individual_protein\n",
            "and: O\n",
            "the: O\n",
            "posterolateral: O\n",
            "hypothalamus: B-Individual_protein\n",
            "showed: O\n",
            "that: O\n",
            "cells: O\n",
            "projecting: O\n",
            "to: O\n",
            "both: O\n",
            "diencephalic: O\n",
            "sites: O\n",
            "were: O\n",
            "intermingled: O\n",
            "in: O\n",
            "all: O\n",
            "of: O\n",
            "the: O\n",
            "olfactory: O\n",
            "cortical: O\n",
            "areas: O\n",
            "except: O\n",
            "the: O\n",
            "anterior: O\n",
            "olfactory: O\n",
            "nucleus,: O\n",
            "where: O\n",
            "cells: O\n",
            "were: O\n",
            "labeled: O\n",
            "only: O\n",
            "from: O\n",
            "the: O\n",
            "hypothalamus.: B-Individual_protein\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "lateral: O\n",
            "projection: O\n",
            "equivalent: O\n",
            "to: O\n",
            "the: O\n",
            "hypothalamo-pituitary: O\n",
            "tract: O\n",
            "passed: O\n",
            "through: O\n",
            "the: O\n",
            "lateral: O\n",
            "hypothalamic: O\n",
            "area: O\n",
            "to: O\n",
            "the: O\n",
            "median: O\n",
            "eminence,: O\n",
            "and: O\n",
            "nerve: O\n",
            "terminals: O\n",
            "were: O\n",
            "observed: O\n",
            "throughout: O\n",
            "the: O\n",
            "rostrocaudal: O\n",
            "extent: O\n",
            "of: O\n",
            "this: O\n",
            "structure.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Based: O\n",
            "on: O\n",
            "similar: O\n",
            "patterns: O\n",
            "of: O\n",
            "connections,: O\n",
            "dorsolateral: O\n",
            "area(DL): O\n",
            "C: O\n",
            "extends: O\n",
            "from: O\n",
            "dorsolateral: O\n",
            "to: O\n",
            "ventrolateral: O\n",
            "cortex.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "dorsolateral: O\n",
            "area(DL): O\n",
            "C: O\n",
            "receives: O\n",
            "strong,: O\n",
            "feedforward: O\n",
            "input: O\n",
            "from: O\n",
            "V: O\n",
            "II: O\n",
            "and: O\n",
            "projects: O\n",
            "in: O\n",
            "a: O\n",
            "feedforward: O\n",
            "fashion: O\n",
            "to: O\n",
            "the: O\n",
            "rostral: O\n",
            "subdivision: O\n",
            "of: O\n",
            "dorsolateral: O\n",
            "area(DL): O\n",
            "(: O\n",
            "dorsolateral: O\n",
            "area(DL): O\n",
            "R): O\n",
            "and: O\n",
            "caudal: O\n",
            "inferior: O\n",
            "temporal: O\n",
            "(IT): O\n",
            "cortex,: O\n",
            "including: O\n",
            "a: O\n",
            "separate: O\n",
            "location: O\n",
            "in: O\n",
            "the: O\n",
            "inferior: O\n",
            "temporal: O\n",
            "sulcus.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Projections: O\n",
            "from: O\n",
            "the: O\n",
            "periaqueductal: O\n",
            "gray: O\n",
            "to: O\n",
            "the: O\n",
            "rostromedial: O\n",
            "pericoerulear: O\n",
            "region: O\n",
            "and: O\n",
            "nucleus: O\n",
            "locus: O\n",
            "coeruleus:: O\n",
            "anatomic: O\n",
            "and: O\n",
            "physiologic: O\n",
            "studies.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Stem: O\n",
            "axons: O\n",
            "entered: O\n",
            "the: O\n",
            "cerebellum: B-Individual_protein\n",
            "through: O\n",
            "the: O\n",
            "inferior: O\n",
            "cerebellar: O\n",
            "peduncle: O\n",
            "(mostly: O\n",
            "ipsilateral),: O\n",
            "and: O\n",
            "ran: O\n",
            "transversely: O\n",
            "in: O\n",
            "the: O\n",
            "deep: O\n",
            "cerebellar: O\n",
            "white: O\n",
            "matter.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Cortical: B-Individual_protein\n",
            "connections: O\n",
            "of: O\n",
            "electrophysiologically: O\n",
            "and: O\n",
            "architectonically: O\n",
            "defined: O\n",
            "subdivisions: O\n",
            "of: O\n",
            "auditory: O\n",
            "cortex: O\n",
            "in: O\n",
            "squirrels.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "As: O\n",
            "described: O\n",
            "above,: O\n",
            "the: O\n",
            "axons: O\n",
            "of: O\n",
            "some: O\n",
            "ganglion: O\n",
            "cells: O\n",
            "in: O\n",
            "dorsal,: O\n",
            "peripheral: O\n",
            "retina: O\n",
            "left: O\n",
            "the: O\n",
            "retina: B-Individual_protein\n",
            "and: O\n",
            "travelled: O\n",
            "through: O\n",
            "the: O\n",
            "optic: O\n",
            "nerve: O\n",
            "with: O\n",
            "axons: O\n",
            "from: O\n",
            "extreme: O\n",
            "ventral: O\n",
            "retina.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Following: O\n",
            "implantations: O\n",
            "of: O\n",
            "horseradish: O\n",
            "peroxidase-wheat: O\n",
            "germ: O\n",
            "agglutinin(HRP-WGA): O\n",
            "in: O\n",
            "restricted: O\n",
            "parts: O\n",
            "of: O\n",
            "the: O\n",
            "hypothalamus,: B-Individual_protein\n",
            "fibers: O\n",
            "from: O\n",
            "the: O\n",
            "medial: O\n",
            "mamillary: O\n",
            "nucleus: O\n",
            "were: O\n",
            "found: O\n",
            "to: O\n",
            "terminate: O\n",
            "ventromedially: O\n",
            "at: O\n",
            "all: O\n",
            "rostrocaudal: O\n",
            "levels: O\n",
            "of: O\n",
            "the: O\n",
            "pontine: O\n",
            "nuclei,: O\n",
            "ipsilateral: O\n",
            "to: O\n",
            "the: O\n",
            "implantation.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Light: O\n",
            "microscopic: O\n",
            "observation: O\n",
            "of: O\n",
            "sections: O\n",
            "incubated: O\n",
            "with: O\n",
            "tetramethyl: O\n",
            "benzidine: O\n",
            "after: O\n",
            "large: O\n",
            "injections: O\n",
            "(1: O\n",
            "microL: O\n",
            "of: O\n",
            "a: O\n",
            "10%: O\n",
            "solution: O\n",
            "of: O\n",
            "horseradish-peroxidase-conjugated: O\n",
            "wheat-germ: O\n",
            "lectin: O\n",
            "in: O\n",
            "water): O\n",
            "in: O\n",
            "the: O\n",
            "dorsal: O\n",
            "column: O\n",
            "nuclei: O\n",
            "demonstrated: O\n",
            "the: O\n",
            "presence: O\n",
            "of: O\n",
            "labeled: O\n",
            "neurons: O\n",
            "in: O\n",
            "the: O\n",
            "nucleus: O\n",
            "reticularis: O\n",
            "thalami,: O\n",
            "which: O\n",
            "is: O\n",
            "not: O\n",
            "known: O\n",
            "to: O\n",
            "receive: O\n",
            "afferents: O\n",
            "from: O\n",
            "or: O\n",
            "project: O\n",
            "to: O\n",
            "these: O\n",
            "nuclei.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "In: O\n",
            "addition,: O\n",
            "a: O\n",
            "minor: O\n",
            "projection: O\n",
            "from: O\n",
            "the: O\n",
            "presubiculum: B-Individual_protein\n",
            "to: O\n",
            "the: O\n",
            "pyramidal: O\n",
            "cell: O\n",
            "layer: O\n",
            "of: O\n",
            "the: O\n",
            "subiculum: B-Individual_protein\n",
            "and: O\n",
            "to: O\n",
            "the: O\n",
            "molecular: O\n",
            "layer: O\n",
            "of: O\n",
            "the: O\n",
            "hippocampal: O\n",
            "formation: O\n",
            "was: O\n",
            "found.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "major: O\n",
            "finding: O\n",
            "of: O\n",
            "this: O\n",
            "study: O\n",
            "is: O\n",
            "that: O\n",
            "gastric: O\n",
            "motoneurons: O\n",
            "of: O\n",
            "the: O\n",
            "dorsal: O\n",
            "motor: O\n",
            "nucleus: O\n",
            "(DMN): O\n",
            "possess: O\n",
            "numerous: O\n",
            "dendrites: O\n",
            "penetrating: O\n",
            "discrete: O\n",
            "regions: O\n",
            "of: O\n",
            "the: O\n",
            "overlying: O\n",
            "nucleus: O\n",
            "of: O\n",
            "the: O\n",
            "solitary: O\n",
            "tract: O\n",
            "(NTS).: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "supplementary: O\n",
            "eye: O\n",
            "field(SEF): O\n",
            "and: O\n",
            "frontal: O\n",
            "eye: O\n",
            "field(FEF): O\n",
            "exhibited: O\n",
            "similar: O\n",
            "efferent: O\n",
            "projections: O\n",
            "to: O\n",
            "the: O\n",
            "caudate: O\n",
            "and: O\n",
            "putamen.: B-Individual_protein\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "organization: O\n",
            "of: O\n",
            "most: O\n",
            "of: O\n",
            "this: O\n",
            "cortex: O\n",
            "is: O\n",
            "not: O\n",
            "understood,: O\n",
            "but: O\n",
            "one: O\n",
            "subdivision,: O\n",
            "the: O\n",
            "temporal: O\n",
            "dorsal: O\n",
            "area: O\n",
            "(TD),: O\n",
            "has: O\n",
            "been: O\n",
            "identified: O\n",
            "on: O\n",
            "the: O\n",
            "basis: O\n",
            "of: O\n",
            "reciprocal: O\n",
            "connections: O\n",
            "with: O\n",
            "area: O\n",
            "17.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "pattern: O\n",
            "in: O\n",
            "the: O\n",
            "primary: O\n",
            "somatosensory: O\n",
            "cortex: O\n",
            "(S-I): O\n",
            "varied: O\n",
            "according: O\n",
            "to: O\n",
            "the: O\n",
            "representation: O\n",
            "of: O\n",
            "body: O\n",
            "parts,: O\n",
            "so: O\n",
            "that: O\n",
            "the: O\n",
            "cortex: O\n",
            "related: O\n",
            "to: O\n",
            "the: O\n",
            "forepaw: O\n",
            "had: O\n",
            "sparse: O\n",
            "connections,: O\n",
            "while: O\n",
            "connections: O\n",
            "were: O\n",
            "dense: O\n",
            "but: O\n",
            "uneven: O\n",
            "over: O\n",
            "much: O\n",
            "of: O\n",
            "the: O\n",
            "representation: O\n",
            "of: O\n",
            "the: O\n",
            "face,: O\n",
            "nose,: O\n",
            "and: O\n",
            "mouth.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "In: O\n",
            "addition: O\n",
            "to: O\n",
            "this: O\n",
            "projection,: O\n",
            "the: O\n",
            "nucleus: O\n",
            "of: O\n",
            "the: O\n",
            "optic: O\n",
            "tract: O\n",
            "(NOT): O\n",
            "projects: O\n",
            "to: O\n",
            "the: O\n",
            "ipsilateral: O\n",
            "LTN,: O\n",
            "as: O\n",
            "in: O\n",
            "nonprimates.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Dentatocortical: O\n",
            "fibers: O\n",
            "were: O\n",
            "directed: O\n",
            "into: O\n",
            "the: O\n",
            "lateral: O\n",
            "folia: O\n",
            "of: O\n",
            "Crus: O\n",
            "I: O\n",
            "and: O\n",
            "Crus: O\n",
            "II: O\n",
            "of: O\n",
            "the: O\n",
            "lateral: O\n",
            "hemispheric: O\n",
            "zone,: O\n",
            "with: O\n",
            "a: O\n",
            "ligher: O\n",
            "projection: O\n",
            "to: O\n",
            "intermediate: O\n",
            "areas: O\n",
            "of: O\n",
            "the: O\n",
            "hemisphere: O\n",
            "of: O\n",
            "the: O\n",
            "posterior: O\n",
            "lobe: O\n",
            "and: O\n",
            "along: O\n",
            "the: O\n",
            "lateral: O\n",
            "edge: O\n",
            "of: O\n",
            "the: O\n",
            "anterior: O\n",
            "lobe: O\n",
            "hemisphere.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "There: O\n",
            "was: O\n",
            "a: O\n",
            "secondary: O\n",
            "input: O\n",
            "to: O\n",
            "the: O\n",
            "paravermis: O\n",
            "and: O\n",
            "vermis: O\n",
            "arising: O\n",
            "from: O\n",
            "the: O\n",
            "interposed: O\n",
            "and: O\n",
            "fastigial: O\n",
            "nuclei,: O\n",
            "respectively.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Injections: O\n",
            "of: O\n",
            "wheat: O\n",
            "germ: O\n",
            "agglutinin-conjugated: O\n",
            "horseradish: O\n",
            "peroxidase: O\n",
            "(WGA-HRP): O\n",
            "into: O\n",
            "the: O\n",
            "pulvinar(PUL): O\n",
            "labeled: O\n",
            "two: O\n",
            "bands: O\n",
            "of: O\n",
            "cells: O\n",
            "in: O\n",
            "the: O\n",
            "striate: O\n",
            "cortex:: O\n",
            "the: O\n",
            "first: O\n",
            "consisted: O\n",
            "of: O\n",
            "large: O\n",
            "pyramidal: O\n",
            "cells: O\n",
            "in: O\n",
            "the: O\n",
            "upper: O\n",
            "half: O\n",
            "of: O\n",
            "layer: O\n",
            "V;: O\n",
            "the: O\n",
            "second: O\n",
            "consisted: O\n",
            "of: O\n",
            "small: O\n",
            "and: O\n",
            "medium-size: O\n",
            "pyramidal: O\n",
            "cells: O\n",
            "located: O\n",
            "in: O\n",
            "the: O\n",
            "deepest: O\n",
            "part: O\n",
            "of: O\n",
            "layer: O\n",
            "VI.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Anterior: O\n",
            "lateral: O\n",
            "line: O\n",
            "afferents: O\n",
            "also: O\n",
            "project: O\n",
            "to: O\n",
            "the: O\n",
            "magnocellular: O\n",
            "octaval: O\n",
            "nucleus.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Cerebellar: B-Individual_protein\n",
            "cortical: B-Individual_protein\n",
            "efferent: O\n",
            "fibers: O\n",
            "of: O\n",
            "the: O\n",
            "paraflocculus: B-Individual_protein\n",
            "of: O\n",
            "tree: O\n",
            "shrew: O\n",
            "(Tupaia: O\n",
            "glis).: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "present: O\n",
            "retrograde: O\n",
            "tracing: O\n",
            "study: O\n",
            "in: O\n",
            "the: O\n",
            "cat: O\n",
            "describes: O\n",
            "the: O\n",
            "spinal: O\n",
            "cord: O\n",
            "projections: O\n",
            "to: O\n",
            "the: O\n",
            "periaqueductal: O\n",
            "gray: O\n",
            "(PAG),: O\n",
            "taking: O\n",
            "into: O\n",
            "account: O\n",
            "different: O\n",
            "regions: O\n",
            "of: O\n",
            "the: O\n",
            "periaqueductal: O\n",
            "gray(PAG): O\n",
            "and: O\n",
            "all: O\n",
            "spinal: O\n",
            "segments.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Thus,: O\n",
            "in: O\n",
            "the: O\n",
            "present: O\n",
            "study,: O\n",
            "direct: O\n",
            "projections: O\n",
            "from: O\n",
            "the: O\n",
            "non-laminated: O\n",
            "portions: O\n",
            "of: O\n",
            "the: O\n",
            "medial: O\n",
            "geniculate: O\n",
            "nucleus: O\n",
            "to: O\n",
            "the: O\n",
            "temporal: O\n",
            "polar: O\n",
            "cortex: O\n",
            "and: O\n",
            "amygdala: B-Individual_protein\n",
            "were: O\n",
            "examined: O\n",
            "in: O\n",
            "the: O\n",
            "cat: O\n",
            "by: O\n",
            "retrograde: O\n",
            "and: O\n",
            "anterograde: O\n",
            "tract-tracing: O\n",
            "techniques.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "cortical,: B-Individual_protein\n",
            "thalamic,: B-Individual_protein\n",
            "and: O\n",
            "amygdaloid: B-Individual_protein\n",
            "connections: O\n",
            "of: O\n",
            "the: O\n",
            "rodent: O\n",
            "temporal: O\n",
            "cortices: O\n",
            "were: O\n",
            "investigated: O\n",
            "by: O\n",
            "using: O\n",
            "the: O\n",
            "anterograde: O\n",
            "transport: O\n",
            "of: O\n",
            "iontophoretically: O\n",
            "injected: O\n",
            "biocytin.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "These: O\n",
            "data: O\n",
            "confirm: O\n",
            "that: O\n",
            "areas: O\n",
            "Te1: O\n",
            "and: O\n",
            "Te3: O\n",
            "are: O\n",
            "hierarchically: O\n",
            "organized: O\n",
            "cortical: O\n",
            "areas: O\n",
            "connected: O\n",
            "with: O\n",
            "auditory: O\n",
            "relay: O\n",
            "nuclei: O\n",
            "in: O\n",
            "the: O\n",
            "thalamus.: B-Individual_protein\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "main: O\n",
            "telencephalic: B-Individual_protein\n",
            "afferents: O\n",
            "to: O\n",
            "the: O\n",
            "septum: B-Individual_protein\n",
            "arise: O\n",
            "ipsilaterally: O\n",
            "from: O\n",
            "the: O\n",
            "hippocampal: O\n",
            "formation,: O\n",
            "dorsolateral: O\n",
            "corticoid: O\n",
            "area,: O\n",
            "piriform: O\n",
            "cortex,: B-Individual_protein\n",
            "amygdaloid: B-Individual_protein\n",
            "pallium,: B-Individual_protein\n",
            "and: O\n",
            "the: O\n",
            "ventral: O\n",
            "pallidum.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Axons: O\n",
            "of: O\n",
            "tyrosine: O\n",
            "hydroxylase(TH): O\n",
            "-immunoreactive: O\n",
            "neurons: O\n",
            "in: O\n",
            "the: O\n",
            "ventrolateral: O\n",
            "medulla(VLM): O\n",
            "projected: O\n",
            "(1): O\n",
            "dorsally,: O\n",
            "in: O\n",
            "a: O\n",
            "series: O\n",
            "of: O\n",
            "parallel: O\n",
            "transtegmental: O\n",
            "trajectories,: O\n",
            "toward: O\n",
            "the: O\n",
            "dorsomedial: O\n",
            "reticular: O\n",
            "formation,: O\n",
            "the: O\n",
            "nucleus: O\n",
            "of: O\n",
            "the: O\n",
            "solitary: O\n",
            "tract(NTS): O\n",
            ",: O\n",
            "and: O\n",
            "vagal: O\n",
            "motor: O\n",
            "nucleus,: O\n",
            "(2): O\n",
            "longitudinally,: O\n",
            "through: O\n",
            "the: O\n",
            "central: O\n",
            "tegmental: O\n",
            "field,: O\n",
            "as: O\n",
            "fascicles: O\n",
            "running: O\n",
            "parallel: O\n",
            "to: O\n",
            "the: O\n",
            "neuraxis,: O\n",
            "(3): O\n",
            "ventrolaterally: O\n",
            "toward: O\n",
            "the: O\n",
            "ventral: O\n",
            "surface: O\n",
            "(VS): O\n",
            "of: O\n",
            "the: O\n",
            "rostral: O\n",
            "ventrolateral: O\n",
            "medulla(VLM): O\n",
            "where: O\n",
            "they: O\n",
            "appeared: O\n",
            "to: O\n",
            "terminate,: O\n",
            "and: O\n",
            "(4): O\n",
            "medially: O\n",
            "into: O\n",
            "the: O\n",
            "raphe,: O\n",
            "where: O\n",
            "they: O\n",
            "arborized.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "ventromedial: O\n",
            "nucleus: O\n",
            "(VM): B-Individual_protein\n",
            "was: O\n",
            "densely: O\n",
            "labelled: O\n",
            "only: O\n",
            "after: O\n",
            "injections: O\n",
            "in: O\n",
            "the: O\n",
            "rostromedial: O\n",
            "GPi,: O\n",
            "whereas: O\n",
            "the: O\n",
            "dorsal: O\n",
            "part: O\n",
            "of: O\n",
            "the: O\n",
            "zona: O\n",
            "incerta: O\n",
            "was: O\n",
            "labelled: O\n",
            "in: O\n",
            "both: O\n",
            "groups.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "At: O\n",
            "the: O\n",
            "electron: O\n",
            "microscopic: O\n",
            "level,: O\n",
            "the: O\n",
            "biotinylated: O\n",
            "dextran: O\n",
            "amine(BDA): O\n",
            "-positive: O\n",
            "terminals: O\n",
            "in: O\n",
            "the: O\n",
            "ventrolateral(VL): O\n",
            "p: O\n",
            "were: O\n",
            "larger: O\n",
            "and: O\n",
            "more: O\n",
            "elongated: O\n",
            "than: O\n",
            "those: O\n",
            "in: O\n",
            "the: O\n",
            "centromedian(CM): O\n",
            "but,: O\n",
            "overall,: O\n",
            "displayed: O\n",
            "the: O\n",
            "same: O\n",
            "pattern: O\n",
            "of: O\n",
            "synaptic: O\n",
            "organization.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Organization: O\n",
            "of: O\n",
            "cortical: B-Individual_protein\n",
            "and: O\n",
            "subcortical: B-Individual_protein\n",
            "projections: O\n",
            "to: O\n",
            "anterior: O\n",
            "cingulate: O\n",
            "cortex: O\n",
            "in: O\n",
            "the: O\n",
            "cat.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "This: O\n",
            "finding: O\n",
            "calls: O\n",
            "into: O\n",
            "question: O\n",
            "the: O\n",
            "traditional: O\n",
            "characterization: O\n",
            "of: O\n",
            "cingulate: O\n",
            "cortex: O\n",
            "as: O\n",
            "a: O\n",
            "bridge: O\n",
            "between: O\n",
            "neocortical: O\n",
            "association: O\n",
            "areas: O\n",
            "and: O\n",
            "the: O\n",
            "limbic: B-Individual_protein\n",
            "system.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "In: O\n",
            "kittens: O\n",
            "older: O\n",
            "than: O\n",
            "1: O\n",
            "month: O\n",
            "and: O\n",
            "in: O\n",
            "normal: O\n",
            "adult: O\n",
            "cats,: O\n",
            "retrograde: O\n",
            "tracer: O\n",
            "injections: O\n",
            "restricted: O\n",
            "to,: O\n",
            "or: O\n",
            "including,: O\n",
            "areas: O\n",
            "17: O\n",
            "and: O\n",
            "18: O\n",
            "label: O\n",
            "only: O\n",
            "a: O\n",
            "few: O\n",
            "neurons: O\n",
            "in: O\n",
            "areas: O\n",
            "AI: O\n",
            "and: O\n",
            "AII.: B-Individual_protein\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "We: O\n",
            "conclude: O\n",
            "that: O\n",
            "area: O\n",
            "X: O\n",
            "neurons: O\n",
            "projecting: O\n",
            "to: O\n",
            "dorsolateral: O\n",
            "thalamus(DLM): O\n",
            "express: O\n",
            "glutamic: O\n",
            "acid: O\n",
            "decarboxylase(GAD): O\n",
            "and: O\n",
            "are: O\n",
            "thus: O\n",
            "likely: O\n",
            "gamma-aminobutyric: O\n",
            "acid(GABA): O\n",
            "ergic.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Conversely,: O\n",
            "CRF: O\n",
            "positive: O\n",
            "neurons: O\n",
            "appeared: O\n",
            "in: O\n",
            "large: O\n",
            "numbers,: O\n",
            "some: O\n",
            "being: O\n",
            "labeled: O\n",
            "with: O\n",
            "WGA,: O\n",
            "in: O\n",
            "the: O\n",
            "caudal: O\n",
            "periventricular: O\n",
            "region: O\n",
            "(CPR),: O\n",
            "and: O\n",
            "in: O\n",
            "the: O\n",
            "dorsomedial: O\n",
            "to: O\n",
            "lateral: O\n",
            "hypothalamic: O\n",
            "area: O\n",
            "(DLH),: O\n",
            "especially: O\n",
            "in: O\n",
            "the: O\n",
            "latter.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Almost: O\n",
            "two-thirds: O\n",
            "of: O\n",
            "tyrosine: O\n",
            "hydroxylase(TH): O\n",
            "-containing: O\n",
            "boutons: O\n",
            "displayed: O\n",
            "gamma-aminobutyric: O\n",
            "acid: O\n",
            "(GABA): O\n",
            "immunoreactivity: O\n",
            "in: O\n",
            "the: O\n",
            "striatum: B-Individual_protein\n",
            "of: O\n",
            "parkinsonian: O\n",
            "monkeys,: O\n",
            "whereas: O\n",
            "under: O\n",
            "5%: O\n",
            "did: O\n",
            "so: O\n",
            "in: O\n",
            "the: O\n",
            "normal: O\n",
            "striatum.: B-Individual_protein\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Electrophysiological: O\n",
            "mapping: O\n",
            "shows: O\n",
            "that: O\n",
            "the: O\n",
            "visuotectal: O\n",
            "projection: O\n",
            "is: O\n",
            "complete: O\n",
            "over: O\n",
            "the: O\n",
            "entire: O\n",
            "extent: O\n",
            "of: O\n",
            "the: O\n",
            "tectum,: B-Individual_protein\n",
            "symmetrical: O\n",
            "for: O\n",
            "right: O\n",
            "and: O\n",
            "left: O\n",
            "fields: O\n",
            "and: O\n",
            "patterned: O\n",
            "normally.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "five: O\n",
            "labeled: O\n",
            "midbrain: O\n",
            "nuclei: O\n",
            "were: O\n",
            "the: O\n",
            "periaqueductal: O\n",
            "gray,: O\n",
            "nucleus: O\n",
            "cuneiformis,: O\n",
            "deep: O\n",
            "layers: O\n",
            "of: O\n",
            "the: O\n",
            "superior: O\n",
            "colliculus,: O\n",
            "nucleus: O\n",
            "of: O\n",
            "Darkschewitsch,: O\n",
            "and: O\n",
            "the: O\n",
            "interstitial: O\n",
            "nucleus: O\n",
            "of: O\n",
            "Cajal.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Numbers: O\n",
            "of: O\n",
            "axons: O\n",
            "in: O\n",
            "lateral: O\n",
            "and: O\n",
            "ventral: O\n",
            "funiculi: O\n",
            "of: O\n",
            "rat: O\n",
            "sacral: O\n",
            "spinal: O\n",
            "cord.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "axons: O\n",
            "are: O\n",
            "concentrated: O\n",
            "in: O\n",
            "the: O\n",
            "dorsolateral: O\n",
            "part: O\n",
            "of: O\n",
            "the: O\n",
            "lateral: O\n",
            "funiculus,: O\n",
            "and: O\n",
            "so: O\n",
            "the: O\n",
            "dorsal: O\n",
            "part: O\n",
            "of: O\n",
            "the: O\n",
            "lateral: O\n",
            "funiculus,: O\n",
            "often: O\n",
            "referred: O\n",
            "to: O\n",
            "as: O\n",
            "the: O\n",
            "dorsolateral: O\n",
            "funiculus,: O\n",
            "contains: O\n",
            "more: O\n",
            "than: O\n",
            "half: O\n",
            "the: O\n",
            "fibers: O\n",
            "in: O\n",
            "the: O\n",
            "white: O\n",
            "matter: O\n",
            "of: O\n",
            "the: O\n",
            "spinal: O\n",
            "cord.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Effects: O\n",
            "of: O\n",
            "visual: O\n",
            "deprivation: O\n",
            "upon: O\n",
            "the: O\n",
            "geniculocortical: O\n",
            "W-cell: O\n",
            "pathway: O\n",
            "in: O\n",
            "the: O\n",
            "cat:: O\n",
            "area: O\n",
            "19: O\n",
            "and: O\n",
            "its: O\n",
            "afferent: O\n",
            "input.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Within: O\n",
            "the: O\n",
            "limits: O\n",
            "of: O\n",
            "our: O\n",
            "technique,: O\n",
            "measurements: O\n",
            "of: O\n",
            "relay: O\n",
            "cells: O\n",
            "in: O\n",
            "the: O\n",
            "parvocellular: O\n",
            "C: O\n",
            "laminae: O\n",
            "labeled: O\n",
            "by: O\n",
            "injections: O\n",
            "into: O\n",
            "area: O\n",
            "19: O\n",
            "of: O\n",
            "deprived: O\n",
            "cats: O\n",
            "indicated: O\n",
            "that: O\n",
            "cell: O\n",
            "size: O\n",
            "in: O\n",
            "the: O\n",
            "deprived: O\n",
            "C: O\n",
            "laminae: O\n",
            "was: O\n",
            "unaffected: O\n",
            "by: O\n",
            "the: O\n",
            "deprivation.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "data: O\n",
            "from: O\n",
            "cases: O\n",
            "involving: O\n",
            "spread: O\n",
            "of: O\n",
            "the: O\n",
            "injection: O\n",
            "into: O\n",
            "area: O\n",
            "3a: O\n",
            "suggest: O\n",
            "that: O\n",
            "projection: O\n",
            "patterns: O\n",
            "from: O\n",
            "area: O\n",
            "3a: O\n",
            "to: O\n",
            "ventral,: O\n",
            "intralaminar,: O\n",
            "and: O\n",
            "medial: O\n",
            "thalamic: O\n",
            "nuclei: O\n",
            "are: O\n",
            "similar: O\n",
            "to: O\n",
            "those: O\n",
            "from: O\n",
            "area: O\n",
            "4.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Dorsomedial: O\n",
            "dendrites: O\n",
            "followed: O\n",
            "a: O\n",
            "path: O\n",
            "parallel: O\n",
            "to: O\n",
            "the: O\n",
            "medial: O\n",
            "border: O\n",
            "of: O\n",
            "the: O\n",
            "ventral: O\n",
            "horn: O\n",
            "are: O\n",
            "frequently: O\n",
            "terminated: O\n",
            "near: O\n",
            "the: O\n",
            "central: O\n",
            "canal.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Based: O\n",
            "on: O\n",
            "their: O\n",
            "axonal: O\n",
            "projections,: O\n",
            "labeled: O\n",
            "neurons: O\n",
            "(n: O\n",
            "=: O\n",
            "76): O\n",
            "were: O\n",
            "divided: O\n",
            "into: O\n",
            "the: O\n",
            "following: O\n",
            "groups:: O\n",
            "thalamic(TH): O\n",
            "1: O\n",
            "neurons,: O\n",
            "with: O\n",
            "mostly: O\n",
            "ipsilateral: O\n",
            "projections: O\n",
            "to: O\n",
            "the: O\n",
            "striatum;: O\n",
            "thalamic(TH): O\n",
            "2: O\n",
            "neurons,: O\n",
            "with: O\n",
            "ipsilateral: O\n",
            "or: O\n",
            "bilateral: O\n",
            "projections: O\n",
            "to: O\n",
            "the: O\n",
            "medial: O\n",
            "amygdala: O\n",
            "and: O\n",
            "nucleus: O\n",
            "accumbens;: O\n",
            "thalamic(TH): O\n",
            "3: O\n",
            "neurons,: O\n",
            "with: O\n",
            "bilateral: O\n",
            "projections: O\n",
            "to: O\n",
            "the: O\n",
            "medial: O\n",
            "and: O\n",
            "dorsal: O\n",
            "pallium;: O\n",
            "thalamic(TH): O\n",
            "4: O\n",
            "neurons,: O\n",
            "with: O\n",
            "mostly: O\n",
            "ipsilateral: O\n",
            "projections: O\n",
            "to: O\n",
            "the: O\n",
            "striatum: B-Individual_protein\n",
            "and: O\n",
            "ipsilateral: O\n",
            "projections: O\n",
            "to: O\n",
            "the: O\n",
            "tectum: B-Individual_protein\n",
            "opticum,: B-Individual_protein\n",
            "tegmentum,: B-Individual_protein\n",
            "and: O\n",
            "rostral: O\n",
            "medulla: O\n",
            "oblongata;: O\n",
            "and: O\n",
            "thalamic(TH): O\n",
            "5: O\n",
            "neurons,: O\n",
            "with: O\n",
            "ipsilateral: O\n",
            "projections: O\n",
            "to: O\n",
            "the: O\n",
            "tegmentum,: O\n",
            "medulla: O\n",
            "oblongata,: O\n",
            "and: O\n",
            "rostral: O\n",
            "spinal: O\n",
            "cord: O\n",
            "without: O\n",
            "(: O\n",
            "thalamic(TH): O\n",
            "5.1): O\n",
            "or: O\n",
            "with: O\n",
            "(: O\n",
            "thalamic(TH): O\n",
            "5.2): O\n",
            "additional: O\n",
            "projections: O\n",
            "to: O\n",
            "the: O\n",
            "optic: O\n",
            "tectum.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "On: O\n",
            "P10,: O\n",
            "labeling: O\n",
            "appeared: O\n",
            "in: O\n",
            "the: O\n",
            "paratrigeminal: O\n",
            "and: O\n",
            "dorsal: O\n",
            "raphe: O\n",
            "nuclei,: O\n",
            "the: O\n",
            "superficial: O\n",
            "zone: O\n",
            "of: O\n",
            "SpVc,: B-Individual_protein\n",
            "and: O\n",
            "laminae: O\n",
            "I/II: O\n",
            "of: O\n",
            "the: O\n",
            "cervical: O\n",
            "spinal: O\n",
            "cord.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "A: O\n",
            "comparison: O\n",
            "of: O\n",
            "the: O\n",
            "connectivity: O\n",
            "patterns: O\n",
            "and: O\n",
            "neurochemical: O\n",
            "characteristics: O\n",
            "of: O\n",
            "the: O\n",
            "opioid: O\n",
            "receptor-dense: O\n",
            "compartments: O\n",
            "in: O\n",
            "the: O\n",
            "nucleus: O\n",
            "accumbens: O\n",
            "with: O\n",
            "those: O\n",
            "in: O\n",
            "the: O\n",
            "caudate-putamen: O\n",
            "reveals: O\n",
            "major: O\n",
            "discrepancies: O\n",
            "between: O\n",
            "these: O\n",
            "two: O\n",
            "striatal: B-Individual_protein\n",
            "subdivisions.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "A: O\n",
            "few: O\n",
            "scattered: O\n",
            "cells: O\n",
            "are: O\n",
            "observed: O\n",
            "in: O\n",
            "the: O\n",
            "periventricular: O\n",
            "gray: O\n",
            "just: O\n",
            "ventral: O\n",
            "to: O\n",
            "the: O\n",
            "IVth: O\n",
            "ventricle: O\n",
            "and: O\n",
            "on: O\n",
            "midline: O\n",
            "in: O\n",
            "the: O\n",
            "raphe.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "We: O\n",
            "injected: O\n",
            "neuroanatomical: O\n",
            "tracers: O\n",
            "into: O\n",
            "auditory: O\n",
            "cortex(AI): O\n",
            "and: O\n",
            "mapped: O\n",
            "out: O\n",
            "the: O\n",
            "distribution: O\n",
            "of: O\n",
            "retrogradely: O\n",
            "labelled: O\n",
            "cells: O\n",
            "in: O\n",
            "the: O\n",
            "cortex.: B-Individual_protein\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Te1: O\n",
            "is: O\n",
            "reciprocally: O\n",
            "connected: O\n",
            "by: O\n",
            "a: O\n",
            "system: O\n",
            "of: O\n",
            "callosal: B-Individual_protein\n",
            "fibers: O\n",
            "with: O\n",
            "the: O\n",
            "contralateral: O\n",
            "homotypic: O\n",
            "cortex.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Retrograde: O\n",
            "transport: O\n",
            "of: O\n",
            "horseradish: O\n",
            "peroxidase: O\n",
            "injected: O\n",
            "into: O\n",
            "the: O\n",
            "olive: O\n",
            "suggests: O\n",
            "that: O\n",
            "terminals: O\n",
            "within: O\n",
            "it: O\n",
            "arise: O\n",
            "from: O\n",
            "the: O\n",
            "subparafascicular: O\n",
            "nucleus: O\n",
            "of: O\n",
            "the: O\n",
            "caudal: O\n",
            "thalamus,: O\n",
            "the: O\n",
            "nucleus: O\n",
            "of: O\n",
            "Darkschewitsch,: O\n",
            "the: O\n",
            "fields: O\n",
            "of: O\n",
            "Forel,: O\n",
            "the: O\n",
            "interstitial: O\n",
            "nucleus: O\n",
            "of: O\n",
            "Cajal,: O\n",
            "the: O\n",
            "periaqueductal: O\n",
            "grey,: O\n",
            "the: O\n",
            "caudal: O\n",
            "pretectal: O\n",
            "nucleus,: O\n",
            "the: O\n",
            "tegmentum: O\n",
            "dorsomedial: O\n",
            "to: O\n",
            "the: O\n",
            "red: O\n",
            "nucleus,: O\n",
            "the: O\n",
            "red: O\n",
            "nucleus: O\n",
            "(minimal),: O\n",
            "the: O\n",
            "nucleus: O\n",
            "linearis,: O\n",
            "as: O\n",
            "well: O\n",
            "as: O\n",
            "the: O\n",
            "dorsolateral: O\n",
            "midbrain: O\n",
            "tegmentum: B-Individual_protein\n",
            "and: O\n",
            "tectum: B-Individual_protein\n",
            "(Henkel: O\n",
            "et: O\n",
            "al.,: O\n",
            "'75).: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "RPO: O\n",
            "projections: O\n",
            "to: O\n",
            "the: O\n",
            "superior: O\n",
            "colliculus(SCi): O\n",
            "and: O\n",
            "the: O\n",
            "anterior: O\n",
            "pretectal: O\n",
            "nucleus(APN): O\n",
            "are: O\n",
            "particularly: O\n",
            "pronounced.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "spinal: O\n",
            "cerebellum: O\n",
            "(anterior: O\n",
            "lobe,: O\n",
            "paramedian: O\n",
            "lobule: O\n",
            "and: O\n",
            "pyramis): O\n",
            "receives: O\n",
            "input: O\n",
            "from: O\n",
            "several: O\n",
            "separate: O\n",
            "regions: O\n",
            "in: O\n",
            "the: O\n",
            "dorsal: O\n",
            "accessory: O\n",
            "nucleus,: O\n",
            "the: O\n",
            "medial: O\n",
            "accessory: O\n",
            "nucleus: O\n",
            "and: O\n",
            "portions: O\n",
            "of: O\n",
            "the: O\n",
            "principal: O\n",
            "nucleus.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Early: O\n",
            "postnatal: O\n",
            "development: O\n",
            "(P4,: O\n",
            "9,: O\n",
            "15,: O\n",
            "18,: O\n",
            "21,: O\n",
            "26):: O\n",
            "The: O\n",
            "corpus: O\n",
            "callosum(CC): O\n",
            "at: O\n",
            "P4: O\n",
            "was: O\n",
            "much: O\n",
            "longer: O\n",
            "than: O\n",
            "at: O\n",
            "E58: O\n",
            "and: O\n",
            "still: O\n",
            "slightly: O\n",
            "elongated: O\n",
            "during: O\n",
            "this: O\n",
            "phase;: O\n",
            "corpus: O\n",
            "callosum(CC): O\n",
            "A: O\n",
            "reached: O\n",
            "8.55: O\n",
            "mm2: O\n",
            "at: O\n",
            "P4: O\n",
            "and: O\n",
            "8.88: O\n",
            "mm2: O\n",
            "at: O\n",
            "P26.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "striatum: B-Individual_protein\n",
            "shows: O\n",
            "a: O\n",
            "major: O\n",
            "projection: O\n",
            "to: O\n",
            "the: O\n",
            "globus: O\n",
            "pallidus.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "It: O\n",
            "was: O\n",
            "not: O\n",
            "possible: O\n",
            "to: O\n",
            "determine: O\n",
            "the: O\n",
            "orientation: O\n",
            "of: O\n",
            "the: O\n",
            "dorsoventral: O\n",
            "axis: O\n",
            "of: O\n",
            "the: O\n",
            "ipsilateral: O\n",
            "retina: O\n",
            "on: O\n",
            "the: O\n",
            "geniculate: O\n",
            "complex.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Anterograde: O\n",
            "tracing: O\n",
            "experiments: O\n",
            "confirmed: O\n",
            "that: O\n",
            "all: O\n",
            "lateral: O\n",
            "preoptic: O\n",
            "area(LPOA): O\n",
            "subfields: O\n",
            "containing: O\n",
            "retrogradely: O\n",
            "labelled: O\n",
            "cells: O\n",
            "project: O\n",
            "to: O\n",
            "the: O\n",
            "lateral: O\n",
            "habenular: O\n",
            "complex(LHb): O\n",
            ".: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Thalamic: O\n",
            "label: O\n",
            "patterns: O\n",
            "suggest: O\n",
            "primary: O\n",
            "and: O\n",
            "ventral: O\n",
            "auditory: O\n",
            "fields: O\n",
            "are: O\n",
            "distinct: O\n",
            "core: O\n",
            "regions.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "While: O\n",
            "neurogenesis: O\n",
            "can: O\n",
            "be: O\n",
            "induced: O\n",
            "at: O\n",
            "various: O\n",
            "brain: O\n",
            "sites: O\n",
            "by: O\n",
            "exogenous: O\n",
            "cues,: O\n",
            "constitutive: O\n",
            "birth: O\n",
            "of: O\n",
            "new: O\n",
            "neurons: O\n",
            "has: O\n",
            "been: O\n",
            "unambiguously: O\n",
            "demonstrated: O\n",
            "within: O\n",
            "the: O\n",
            "subventricular: O\n",
            "zone: O\n",
            "(SVZ): O\n",
            "of: O\n",
            "the: O\n",
            "lateral: O\n",
            "ventricles: O\n",
            "and: O\n",
            "the: O\n",
            "subgranular: O\n",
            "zone: O\n",
            "(SGZ): O\n",
            "of: O\n",
            "the: O\n",
            "dentate: O\n",
            "gyrus.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "median: O\n",
            "raphe(MR): O\n",
            "projects: O\n",
            "moderately: O\n",
            "to: O\n",
            "the: O\n",
            "perirhinal,: O\n",
            "entorhinal: O\n",
            "and: O\n",
            "frontal: O\n",
            "cortices,: O\n",
            "but: O\n",
            "sparingly: O\n",
            "to: O\n",
            "remaining: O\n",
            "regions: O\n",
            "of: O\n",
            "cortex.: B-Individual_protein\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "binding: O\n",
            "to: O\n",
            "the: O\n",
            "stratum: O\n",
            "lacunosum/moleculare: O\n",
            "(or: O\n",
            "the: O\n",
            "distinct: O\n",
            "strata: O\n",
            "lacunosum: O\n",
            "and: O\n",
            "moleculare: O\n",
            "in: O\n",
            "the: O\n",
            "rabbit: O\n",
            "and: O\n",
            "cat): O\n",
            "was: O\n",
            "moderate.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "only: O\n",
            "clear: O\n",
            "exception: O\n",
            "to: O\n",
            "this: O\n",
            "rule: O\n",
            "was: O\n",
            "the: O\n",
            "CA3: O\n",
            "region: O\n",
            "of: O\n",
            "the: O\n",
            "cat: O\n",
            "where: O\n",
            "activity: O\n",
            "was: O\n",
            "seen: O\n",
            "between: O\n",
            "the: O\n",
            "cell: O\n",
            "bodies: O\n",
            "of: O\n",
            "stratum: O\n",
            "pyramidale.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Subcortical: B-Individual_protein\n",
            "projections: O\n",
            "from: O\n",
            "retrosplenial: O\n",
            "dysgranular: O\n",
            "cortex(Rdg): O\n",
            "terminate: O\n",
            "primarily: O\n",
            "in: O\n",
            "the: O\n",
            "ipsilateral: O\n",
            "caudate: O\n",
            "and: O\n",
            "lateral: O\n",
            "thalamic: O\n",
            "nuclei: O\n",
            "and: O\n",
            "bilaterally: O\n",
            "in: O\n",
            "the: O\n",
            "anterior: O\n",
            "thalamic: O\n",
            "nuclei.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Ultrastructural: O\n",
            "quantitative: O\n",
            "analysis: O\n",
            "of: O\n",
            "glutamatergic: O\n",
            "and: O\n",
            "GABAergic: O\n",
            "synaptic: O\n",
            "terminals: O\n",
            "in: O\n",
            "the: O\n",
            "phrenic: O\n",
            "nucleus: O\n",
            "after: O\n",
            "spinal: O\n",
            "cord: O\n",
            "injury.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "These: O\n",
            "results: O\n",
            "are: O\n",
            "important: O\n",
            "for: O\n",
            "a: O\n",
            "more: O\n",
            "complete: O\n",
            "understanding: O\n",
            "of: O\n",
            "the: O\n",
            "synaptic: O\n",
            "plasticity: O\n",
            "that: O\n",
            "occurs: O\n",
            "in: O\n",
            "the: O\n",
            "phrenic: O\n",
            "nucleus: O\n",
            "after: O\n",
            "spinal: O\n",
            "cord: O\n",
            "injury: O\n",
            "and: O\n",
            "to: O\n",
            "show: O\n",
            "how: O\n",
            "the: O\n",
            "plasticity: O\n",
            "may: O\n",
            "relate: O\n",
            "to: O\n",
            "the: O\n",
            "unmasking: O\n",
            "of: O\n",
            "latent: O\n",
            "bulbospinal: O\n",
            "respiratory: O\n",
            "connections: O\n",
            "which: O\n",
            "restore: O\n",
            "function: O\n",
            "to: O\n",
            "the: O\n",
            "hemidiaphragm: O\n",
            "paralyzed: O\n",
            "by: O\n",
            "an: O\n",
            "ipsilateral: O\n",
            "spinal: O\n",
            "cord: O\n",
            "hemisection.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Latency: O\n",
            "measurements: O\n",
            "indicate: O\n",
            "that: O\n",
            "fine: O\n",
            "collateral: O\n",
            "branches: O\n",
            "of: O\n",
            "the: O\n",
            "lateral: O\n",
            "olfactory: O\n",
            "tract(LOT): O\n",
            "reach: O\n",
            "the: O\n",
            "posterior: O\n",
            "olfactory: O\n",
            "cortex,: O\n",
            "whereas: O\n",
            "mainly: O\n",
            "larger: O\n",
            "diameter: O\n",
            "(faster: O\n",
            "conducting): O\n",
            "fibres: O\n",
            "comprise: O\n",
            "the: O\n",
            "contribution: O\n",
            "to: O\n",
            "anterior: O\n",
            "olfactory: O\n",
            "cortex.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Morphine: O\n",
            "or: O\n",
            "U-50,488: O\n",
            "suppresses: O\n",
            "Fos: O\n",
            "protein-like: O\n",
            "immunoreactivity: O\n",
            "in: O\n",
            "the: O\n",
            "spinal: O\n",
            "cord: O\n",
            "and: O\n",
            "nucleus: O\n",
            "tractus: O\n",
            "solitarii: O\n",
            "evoked: O\n",
            "by: O\n",
            "a: O\n",
            "noxious: O\n",
            "visceral: O\n",
            "stimulus: O\n",
            "in: O\n",
            "the: O\n",
            "rat.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Layers: O\n",
            "2/3: O\n",
            "and: O\n",
            "5: O\n",
            "contained: O\n",
            "more: O\n",
            "intense: O\n",
            "PrP(c): O\n",
            "immunoreactivity;: O\n",
            "these: O\n",
            "layers: O\n",
            "receive: O\n",
            "thalamic: B-Individual_protein\n",
            "input: O\n",
            "from: O\n",
            "the: O\n",
            "koniocellular: O\n",
            "division: O\n",
            "of: O\n",
            "the: O\n",
            "LGN,: O\n",
            "and: O\n",
            "these: O\n",
            "layers: O\n",
            "of: O\n",
            "the: O\n",
            "LGN: O\n",
            "also: O\n",
            "had: O\n",
            "strong: O\n",
            "PrP(c): O\n",
            "immunoreactivity.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "choline-acetyltransferase(ChAT): O\n",
            "-immunoreactive: O\n",
            "cells: O\n",
            "were: O\n",
            "located: O\n",
            "in: O\n",
            "the: O\n",
            "pontomesencephalic: O\n",
            "tegmentum: O\n",
            "within: O\n",
            "the: O\n",
            "laterodorsal: O\n",
            "and: O\n",
            "pedunculopontine: O\n",
            "tegmental: O\n",
            "(LDT: O\n",
            "and: O\n",
            "PPT): O\n",
            "nuclei,: O\n",
            "where: O\n",
            "they: O\n",
            "numbered: O\n",
            "approximately: O\n",
            "3,000: O\n",
            "on: O\n",
            "each: O\n",
            "side: O\n",
            "and: O\n",
            "were: O\n",
            "scattered: O\n",
            "in: O\n",
            "the: O\n",
            "midline,: O\n",
            "medial,: O\n",
            "and: O\n",
            "lateral: O\n",
            "medullary: O\n",
            "reticular: O\n",
            "formation,: O\n",
            "where: O\n",
            "they: O\n",
            "numbered: O\n",
            "approximately: O\n",
            "10,000: O\n",
            "in: O\n",
            "total: O\n",
            "on: O\n",
            "each: O\n",
            "side.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "ventral: O\n",
            "neuroepithelial: O\n",
            "lobe: O\n",
            "generates: O\n",
            "the: O\n",
            "neurons: O\n",
            "of: O\n",
            "most: O\n",
            "of: O\n",
            "the: O\n",
            "early: O\n",
            "arising: O\n",
            "hypothalamic: O\n",
            "structures,: O\n",
            "including: O\n",
            "those: O\n",
            "of: O\n",
            "the: O\n",
            "lateral: O\n",
            "tier: O\n",
            "nuclei: O\n",
            "associated: O\n",
            "with: O\n",
            "the: O\n",
            "medial: O\n",
            "forebrain: O\n",
            "bundle,: O\n",
            "and: O\n",
            "the: O\n",
            "heterogeneous: O\n",
            "intermediate: O\n",
            "tier: O\n",
            "nuclei.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Three: O\n",
            "forebrain: O\n",
            "nuclei: O\n",
            "project: O\n",
            "to: O\n",
            "the: O\n",
            "carp: O\n",
            "auditory: O\n",
            "midbrain.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "A: O\n",
            "very: O\n",
            "narrow: O\n",
            "midline: O\n",
            "area: O\n",
            "which: O\n",
            "appears: O\n",
            "to: O\n",
            "project: O\n",
            "bilaterally: O\n",
            "to: O\n",
            "the: O\n",
            "NM,: B-Individual_protein\n",
            "a: O\n",
            "wider: O\n",
            "intermediate: O\n",
            "area: O\n",
            "(homologous: O\n",
            "to: O\n",
            "zone: O\n",
            "A): O\n",
            "related: O\n",
            "to: O\n",
            "the: O\n",
            "ipsilateral: O\n",
            "NM,: O\n",
            "and: O\n",
            "a: O\n",
            "lateral: O\n",
            "area: O\n",
            "(homologous: O\n",
            "to: O\n",
            "zone: O\n",
            "B): O\n",
            "related: O\n",
            "mainly: O\n",
            "to: O\n",
            "the: O\n",
            "ipsilateral: O\n",
            "vestibular: O\n",
            "complex,: O\n",
            "primarily: O\n",
            "its: O\n",
            "lateral: O\n",
            "nucleus.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "heaviest: O\n",
            "projection: O\n",
            "to: O\n",
            "the: O\n",
            "insula: O\n",
            "terminated: O\n",
            "in: O\n",
            "the: O\n",
            "agranular: O\n",
            "insular: O\n",
            "cortex: O\n",
            "with: O\n",
            "a: O\n",
            "decreasing: O\n",
            "gradient: O\n",
            "of: O\n",
            "innervation: O\n",
            "to: O\n",
            "the: O\n",
            "more: O\n",
            "caudally: O\n",
            "placed: O\n",
            "dysgranular: O\n",
            "and: O\n",
            "granular: O\n",
            "insular: O\n",
            "areas.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "In: O\n",
            "order: O\n",
            "to: O\n",
            "better: O\n",
            "understand: O\n",
            "the: O\n",
            "organization: O\n",
            "of: O\n",
            "extrastriate: O\n",
            "cortex: O\n",
            "in: O\n",
            "tree: O\n",
            "shrews,: O\n",
            "injections: O\n",
            "in: O\n",
            "area: O\n",
            "17: O\n",
            "of: O\n",
            "wheat: O\n",
            "germ: O\n",
            "agglutinin: O\n",
            "or: O\n",
            "tritiated: O\n",
            "proline: O\n",
            "were: O\n",
            "used: O\n",
            "to: O\n",
            "reveal: O\n",
            "an: O\n",
            "intrinsic: O\n",
            "pattern: O\n",
            "of: O\n",
            "connections,: O\n",
            "ipsilateral: O\n",
            "connections: O\n",
            "with: O\n",
            "area: O\n",
            "18: O\n",
            "and: O\n",
            "two: O\n",
            "other: O\n",
            "subdivisions: O\n",
            "of: O\n",
            "cortex,: B-Individual_protein\n",
            "and: O\n",
            "callosal: B-Individual_protein\n",
            "connections: O\n",
            "with: O\n",
            "areas: O\n",
            "17: O\n",
            "and: O\n",
            "18: O\n",
            "of: O\n",
            "the: O\n",
            "opposite: O\n",
            "cerebral: O\n",
            "hemisphere.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Therefore,: O\n",
            "areas: O\n",
            "of: O\n",
            "the: O\n",
            "basal: O\n",
            "telencephalon: O\n",
            "should: O\n",
            "be: O\n",
            "reclassified: O\n",
            "as: O\n",
            "olfactory,: O\n",
            "vomeronasal,: O\n",
            "or: O\n",
            "mixed: O\n",
            "chemosensory: O\n",
            "structures,: O\n",
            "which: O\n",
            "could: O\n",
            "facilitate: O\n",
            "understanding: O\n",
            "of: O\n",
            "olfactory-vomeronasal: O\n",
            "interactions: O\n",
            "in: O\n",
            "functional: O\n",
            "studies.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Colliculus: B-Individual_protein\n",
            "cells: O\n",
            "projecting: O\n",
            "to: O\n",
            "the: O\n",
            "abducens: O\n",
            "nucleus: O\n",
            "and: O\n",
            "adjacent: O\n",
            "reticular: O\n",
            "formation: O\n",
            "are: O\n",
            "located: O\n",
            "only: O\n",
            "in: O\n",
            "the: O\n",
            "caudal: O\n",
            "three-fourths: O\n",
            "of: O\n",
            "the: O\n",
            "colliculus,: O\n",
            "where: O\n",
            "they: O\n",
            "become: O\n",
            "increasingly: O\n",
            "concentrated: O\n",
            "at: O\n",
            "successively: O\n",
            "more: O\n",
            "caudal: O\n",
            "levels.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "sources: O\n",
            "of: O\n",
            "ipsilateral: O\n",
            "cortical: O\n",
            "afferent: O\n",
            "projections: O\n",
            "to: O\n",
            "basoventral: O\n",
            "and: O\n",
            "mediodorsal: O\n",
            "prefrontal: O\n",
            "cortices: O\n",
            "that: O\n",
            "receive: O\n",
            "some: O\n",
            "visual: O\n",
            "input: O\n",
            "were: O\n",
            "studied: O\n",
            "with: O\n",
            "retrograde: O\n",
            "tracers: O\n",
            "(horseradish: O\n",
            "peroxidase: O\n",
            "or: O\n",
            "fluorescent: O\n",
            "dyes): O\n",
            "in: O\n",
            "eight: O\n",
            "rhesus: O\n",
            "monkeys.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "To: O\n",
            "assess: O\n",
            "the: O\n",
            "functional: O\n",
            "contribution: O\n",
            "of: O\n",
            "the: O\n",
            "cortical: B-Individual_protein\n",
            "input: O\n",
            "to: O\n",
            "the: O\n",
            "receptive: O\n",
            "field: O\n",
            "properties: O\n",
            "of: O\n",
            "nucleus: O\n",
            "of: O\n",
            "the: O\n",
            "optic: O\n",
            "tract: O\n",
            "(NOT): O\n",
            "and: O\n",
            "dorsal: O\n",
            "terminal: O\n",
            "nucleus: O\n",
            "(DTN): O\n",
            "neurons,: O\n",
            "a: O\n",
            "first: O\n",
            "set: O\n",
            "of: O\n",
            "experiments: O\n",
            "evaluated: O\n",
            "the: O\n",
            "response: O\n",
            "properties: O\n",
            "of: O\n",
            "nucleus: O\n",
            "of: O\n",
            "the: O\n",
            "optic: O\n",
            "tract(NOT): O\n",
            "-: O\n",
            "dorsal: O\n",
            "terminal: O\n",
            "nucleus(DTN): O\n",
            "cells: O\n",
            "in: O\n",
            "monkeys: O\n",
            "with: O\n",
            "split: O\n",
            "corpus: O\n",
            "callosum.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Less: O\n",
            "dense: O\n",
            "terminals: O\n",
            "from: O\n",
            "the: O\n",
            "cuneate: O\n",
            "nucleus(Cu): O\n",
            "were: O\n",
            "also: O\n",
            "observed: O\n",
            "in: O\n",
            "the: O\n",
            "posterior: O\n",
            "thalamic: O\n",
            "group,: O\n",
            "the: O\n",
            "ventral: O\n",
            "aspect: O\n",
            "of: O\n",
            "the: O\n",
            "zona: O\n",
            "incerta: O\n",
            "and: O\n",
            "the: O\n",
            "caudal: O\n",
            "and: O\n",
            "dorsal: O\n",
            "portion: O\n",
            "of: O\n",
            "the: O\n",
            "reuniens: O\n",
            "area.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Cortical: B-Individual_protein\n",
            "connections: O\n",
            "of: O\n",
            "the: O\n",
            "middle: O\n",
            "temporal: O\n",
            "visual: O\n",
            "area: O\n",
            "(MT): O\n",
            "and: O\n",
            "the: O\n",
            "superior: O\n",
            "temporal: O\n",
            "cortex: O\n",
            "in: O\n",
            "owl: O\n",
            "monkeys.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Injections: O\n",
            "of: O\n",
            "3H-proline: O\n",
            "into: O\n",
            "superior: O\n",
            "temporal: O\n",
            "visual: O\n",
            "region(ST): O\n",
            "revealed: O\n",
            "a: O\n",
            "diffuse: O\n",
            "projection: O\n",
            "to: O\n",
            "largely: O\n",
            "layer: O\n",
            "I: O\n",
            "of: O\n",
            "middle: O\n",
            "temporal: O\n",
            "visual: O\n",
            "area(MT): O\n",
            ",: O\n",
            "and: O\n",
            "dense: O\n",
            "projections: O\n",
            "to: O\n",
            "posterior: O\n",
            "parietal: O\n",
            "cortex,: O\n",
            "cortex: O\n",
            "in: O\n",
            "more: O\n",
            "rostral: O\n",
            "parts: O\n",
            "of: O\n",
            "the: O\n",
            "superior: O\n",
            "temporal: O\n",
            "sulcus,: O\n",
            "ventromedial: O\n",
            "inferior: O\n",
            "temporal: O\n",
            "cortex,: O\n",
            "and: O\n",
            "the: O\n",
            "region: O\n",
            "of: O\n",
            "the: O\n",
            "frontal: O\n",
            "eye: O\n",
            "fields.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Although: O\n",
            "there: O\n",
            "is: O\n",
            "spatial: O\n",
            "order: O\n",
            "to: O\n",
            "the: O\n",
            "lateralis: O\n",
            "projections,: O\n",
            "there: O\n",
            "is: O\n",
            "no: O\n",
            "clear: O\n",
            "somatotopic: O\n",
            "organization: O\n",
            "in: O\n",
            "the: O\n",
            "lateralis: O\n",
            "region.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Pyramidal: O\n",
            "cells: O\n",
            "in: O\n",
            "both: O\n",
            "hippocampus: B-Individual_protein\n",
            "and: O\n",
            "neocortex: B-Individual_protein\n",
            "express: O\n",
            "NR1,: O\n",
            "NR2A,: O\n",
            "NR2B,: O\n",
            "and,: O\n",
            "to: O\n",
            "a: O\n",
            "lesser: O\n",
            "extent,: O\n",
            "NR2D: O\n",
            "mRNA.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Projections: O\n",
            "to: O\n",
            "the: O\n",
            "paraoculomotor: O\n",
            "cell: O\n",
            "groups: O\n",
            "in: O\n",
            "the: O\n",
            "medial: O\n",
            "dien-mesencephalic: O\n",
            "tegmentum: O\n",
            "originate: O\n",
            "almost: O\n",
            "exclusively: O\n",
            "from: O\n",
            "the: O\n",
            "frontal: O\n",
            "lobe.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "lateral: O\n",
            "cortex: O\n",
            "is: O\n",
            "the: O\n",
            "largest: O\n",
            "of: O\n",
            "these: O\n",
            "territories,: O\n",
            "and: O\n",
            "receives: O\n",
            "the: O\n",
            "terminals: O\n",
            "of: O\n",
            "the: O\n",
            "main: O\n",
            "olfactory: B-Individual_protein\n",
            "projection: O\n",
            "throughout: O\n",
            "its: O\n",
            "extent.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "These: O\n",
            "fibers: O\n",
            "cross: O\n",
            "in: O\n",
            "the: O\n",
            "habenular: O\n",
            "commissure: O\n",
            "and: O\n",
            "terminate: O\n",
            "in: O\n",
            "the: O\n",
            "contralateral: O\n",
            "cortical: O\n",
            "amygdaloid: O\n",
            "nucleus: O\n",
            "and: O\n",
            "periamygdaloid: O\n",
            "part: O\n",
            "of: O\n",
            "the: O\n",
            "lateral: O\n",
            "cortex.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "presence: O\n",
            "of: O\n",
            "compensatory: O\n",
            "eye: O\n",
            "movements,: O\n",
            "the: O\n",
            "directional: O\n",
            "sensitivity: O\n",
            "of: O\n",
            "the: O\n",
            "semicircular: O\n",
            "canals,: O\n",
            "the: O\n",
            "location: O\n",
            "of: O\n",
            "the: O\n",
            "motoneurons: O\n",
            "innervating: O\n",
            "each: O\n",
            "eye: O\n",
            "muscle,: O\n",
            "and: O\n",
            "our: O\n",
            "results: O\n",
            "indicate: O\n",
            "that: O\n",
            "the: O\n",
            "excitatory: O\n",
            "input: O\n",
            "to: O\n",
            "the: O\n",
            "extraocular: O\n",
            "motoneurons: O\n",
            "is: O\n",
            "derived: O\n",
            "from: O\n",
            "the: O\n",
            "contralateral: O\n",
            "descending: O\n",
            "octaval: O\n",
            "nucleus,: O\n",
            "and: O\n",
            "the: O\n",
            "inhibitory: O\n",
            "input: O\n",
            "is: O\n",
            "derived: O\n",
            "from: O\n",
            "the: O\n",
            "ipsilateral: O\n",
            "anterior: O\n",
            "octaval: O\n",
            "nucleus.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Retinal: B-Individual_protein\n",
            "projections: O\n",
            "to: O\n",
            "the: O\n",
            "superior: O\n",
            "colliculus: O\n",
            "and: O\n",
            "dorsal: O\n",
            "lateral: O\n",
            "geniculate: O\n",
            "nucleus: O\n",
            "in: O\n",
            "the: O\n",
            "tammar: O\n",
            "wallaby: O\n",
            "(Macropus: O\n",
            "eugenii):: O\n",
            "I.: O\n",
            "Normal: O\n",
            "topography.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Distribution,: O\n",
            "laminar: O\n",
            "location,: O\n",
            "and: O\n",
            "morphology: O\n",
            "of: O\n",
            "tectal: B-Individual_protein\n",
            "neurons: O\n",
            "projecting: O\n",
            "to: O\n",
            "the: O\n",
            "isthmo-optic: O\n",
            "nucleus: O\n",
            "and: O\n",
            "the: O\n",
            "nucleus: O\n",
            "isthmi,: O\n",
            "pars: O\n",
            "parvocellularis: O\n",
            "in: O\n",
            "the: O\n",
            "pigeon: O\n",
            "(Columba: O\n",
            "livia): O\n",
            "and: O\n",
            "chick: O\n",
            "(Gallus: O\n",
            "domesticus):: O\n",
            "a: O\n",
            "retrograde: O\n",
            "labelling: O\n",
            "study.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Retrograde: O\n",
            "transport: O\n",
            "of: O\n",
            "Phaseolus: O\n",
            "vulgaris: O\n",
            "leucoagglutinin: O\n",
            "(PHA-L),: O\n",
            "fluorogold,: O\n",
            "fast: O\n",
            "blue,: O\n",
            "rhodamine: O\n",
            "labelled: O\n",
            "microspheres,: O\n",
            "and: O\n",
            "horseradish: O\n",
            "peroxidase: O\n",
            "(HRP): O\n",
            "was: O\n",
            "employed: O\n",
            "to: O\n",
            "study: O\n",
            "the: O\n",
            "distribution,: O\n",
            "laminar: O\n",
            "location: O\n",
            "within: O\n",
            "the: O\n",
            "optic: O\n",
            "tectum,: O\n",
            "and: O\n",
            "morphology: O\n",
            "of: O\n",
            "tectal: B-Individual_protein\n",
            "cells: O\n",
            "projecting: O\n",
            "upon: O\n",
            "the: O\n",
            "isthmo-optic: O\n",
            "nucleus: O\n",
            "(ION): O\n",
            "and: O\n",
            "the: O\n",
            "nucleus: O\n",
            "isthmi,: O\n",
            "pars: O\n",
            "parvocellularis: O\n",
            "(Ipc),: O\n",
            "in: O\n",
            "the: O\n",
            "pigeon: O\n",
            "and: O\n",
            "chick.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "apical: O\n",
            "processes: O\n",
            "extended: O\n",
            "into: O\n",
            "the: O\n",
            "retino-recipient: O\n",
            "layers: O\n",
            "(2-7): O\n",
            "of: O\n",
            "the: O\n",
            "stratum: O\n",
            "griseum: O\n",
            "et: O\n",
            "fibrosum: O\n",
            "superficiale(SGFS): O\n",
            "and: O\n",
            "basal: O\n",
            "dendrites: O\n",
            "extended: O\n",
            "into: O\n",
            "layers: O\n",
            "12-14: O\n",
            "of: O\n",
            "the: O\n",
            "stratum: O\n",
            "griseum: O\n",
            "et: O\n",
            "fibrosum: O\n",
            "superficiale(SGFS): O\n",
            ".: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "three: O\n",
            "doses: O\n",
            "of: O\n",
            "caffeine: O\n",
            "induced: O\n",
            "distinct: O\n",
            "dose-related: O\n",
            "patterns: O\n",
            "of: O\n",
            "c-Fos: O\n",
            "immunoreactivity: O\n",
            "in: O\n",
            "several: O\n",
            "arousal-promoting: O\n",
            "areas,: O\n",
            "including: O\n",
            "orexin: O\n",
            "neurons: O\n",
            "and: O\n",
            "adjacent: O\n",
            "neurons: O\n",
            "containing: O\n",
            "neither: O\n",
            "orexin: O\n",
            "nor: O\n",
            "melanin-concentrating: O\n",
            "hormone;: O\n",
            "tuberomammillary: O\n",
            "histaminergic: O\n",
            "neurons;: O\n",
            "locus: O\n",
            "coeruleus: O\n",
            "noradrenergic: O\n",
            "neurons;: O\n",
            "noncholinergic: O\n",
            "basal: O\n",
            "forebrain: O\n",
            "neurons: O\n",
            "that: O\n",
            "do: O\n",
            "not: O\n",
            "contain: O\n",
            "parvalbumin;: O\n",
            "and: O\n",
            "nondopaminergic: O\n",
            "neurons: O\n",
            "in: O\n",
            "the: O\n",
            "ventral: O\n",
            "tegmental: O\n",
            "area.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Immunohistochemical: O\n",
            "techniques: O\n",
            "were: O\n",
            "used: O\n",
            "to: O\n",
            "examine: O\n",
            "the: O\n",
            "distribution: O\n",
            "of: O\n",
            "neuroactive: O\n",
            "peptides: O\n",
            "in: O\n",
            "the: O\n",
            "suprachiasmatic: O\n",
            "nucleus(SCN): O\n",
            "and: O\n",
            "intergeniculate: O\n",
            "leaflet(IGL): O\n",
            ",: O\n",
            "and: O\n",
            "retinal: B-Individual_protein\n",
            "projections: O\n",
            "to: O\n",
            "these: O\n",
            "structures: O\n",
            "were: O\n",
            "traced: O\n",
            "with: O\n",
            "anterograde: O\n",
            "transport: O\n",
            "of: O\n",
            "the: O\n",
            "beta: O\n",
            "subunit: O\n",
            "of: O\n",
            "cholera: O\n",
            "toxin.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Those: O\n",
            "innervating: O\n",
            "the: O\n",
            "center: O\n",
            "of: O\n",
            "the: O\n",
            "substantia: O\n",
            "nigra: O\n",
            "pars: O\n",
            "reticulata: O\n",
            "were: O\n",
            "observed: O\n",
            "after: O\n",
            "a: O\n",
            "single: O\n",
            "nigral: B-Individual_protein\n",
            "injection: O\n",
            "of: O\n",
            "the: O\n",
            "tracer,: O\n",
            "whereas: O\n",
            "those: O\n",
            "projecting: O\n",
            "to: O\n",
            "distinct: O\n",
            "sites: O\n",
            "of: O\n",
            "the: O\n",
            "substantia: O\n",
            "nigra: O\n",
            "pars: O\n",
            "reticulata: O\n",
            "along: O\n",
            "a: O\n",
            "rostrocaudal: O\n",
            "axis: O\n",
            "were: O\n",
            "observed: O\n",
            "only: O\n",
            "after: O\n",
            "multiple: O\n",
            "injections.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "These: O\n",
            "data: O\n",
            "suggest: O\n",
            "that: O\n",
            "the: O\n",
            "region: O\n",
            "of: O\n",
            "the: O\n",
            "sacral: O\n",
            "parasympathetic: O\n",
            "nucleus(SPN): O\n",
            "is: O\n",
            "a: O\n",
            "site: O\n",
            "for: O\n",
            "distinct: O\n",
            "subpopulations: O\n",
            "of: O\n",
            "neurons: O\n",
            "that: O\n",
            "project: O\n",
            "to: O\n",
            "the: O\n",
            "laterodorsal: O\n",
            "tegmentum(LDT): O\n",
            "and: O\n",
            "to: O\n",
            "the: O\n",
            "major: O\n",
            "pelvic: O\n",
            "ganglion(MPG): O\n",
            "and: O\n",
            "that: O\n",
            "nitric: O\n",
            "oxide: O\n",
            "synthase(NOS): O\n",
            "is: O\n",
            "contained: O\n",
            "in: O\n",
            "some: O\n",
            "preganglionic: O\n",
            "neurons,: O\n",
            "but: O\n",
            "is: O\n",
            "not: O\n",
            "a: O\n",
            "marker: O\n",
            "for: O\n",
            "laterodorsal: O\n",
            "tegmentum(LDT): O\n",
            "projection: O\n",
            "neurons.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Fibers: O\n",
            "originating: O\n",
            "from: O\n",
            "subnucleus: O\n",
            "reticularis: O\n",
            "ventralis: O\n",
            "(SRV): O\n",
            "travelled: O\n",
            "ipsilaterally: O\n",
            "through: O\n",
            "the: O\n",
            "lateral: O\n",
            "and: O\n",
            "ventrolateral: O\n",
            "funiculi: O\n",
            "and: O\n",
            "bilaterally: O\n",
            "through: O\n",
            "the: O\n",
            "ventromedial: O\n",
            "funiculus.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Early: O\n",
            "differentiation: O\n",
            "of: O\n",
            "ganglion,: O\n",
            "amacrine,: O\n",
            "bipolar,: O\n",
            "and: O\n",
            "Muller: O\n",
            "cells: O\n",
            "in: O\n",
            "the: O\n",
            "developing: O\n",
            "fovea: B-Individual_protein\n",
            "of: O\n",
            "human: O\n",
            "retina.: B-Individual_protein\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "At: O\n",
            "14-15: O\n",
            "weeks: O\n",
            "of: O\n",
            "gestation(WG): O\n",
            ",: O\n",
            "peak: O\n",
            "death: O\n",
            "occurred: O\n",
            "at: O\n",
            "the: O\n",
            "incipient: O\n",
            "fovea;: O\n",
            "however,: O\n",
            "by: O\n",
            "20: O\n",
            "weeks: O\n",
            "of: O\n",
            "gestation(WG): O\n",
            "the: O\n",
            "distribution: O\n",
            "was: O\n",
            "bimodal,: O\n",
            "with: O\n",
            "peaks: O\n",
            "at: O\n",
            "more: O\n",
            "eccentric: O\n",
            "locations: O\n",
            "on: O\n",
            "either: O\n",
            "side: O\n",
            "of: O\n",
            "the: O\n",
            "incipient: O\n",
            "fovea: B-Individual_protein\n",
            "with: O\n",
            "increasing: O\n",
            "age.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Forebrain: B-Individual_protein\n",
            "connectivity: O\n",
            "of: O\n",
            "the: O\n",
            "prefrontal: O\n",
            "cortex: O\n",
            "in: O\n",
            "the: O\n",
            "marmoset: O\n",
            "monkey: O\n",
            "(Callithrix: O\n",
            "jacchus):: O\n",
            "an: O\n",
            "anterograde: O\n",
            "and: O\n",
            "retrograde: O\n",
            "tract-tracing: O\n",
            "study.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Similar: O\n",
            "to: O\n",
            "the: O\n",
            "corresponding: O\n",
            "parabrachial: O\n",
            "nucleus: O\n",
            "in: O\n",
            "birds: O\n",
            "and: O\n",
            "mammals,: O\n",
            "the: O\n",
            "secondary: O\n",
            "gustatory: O\n",
            "nucleus: O\n",
            "of: O\n",
            "catfish: O\n",
            "consists: O\n",
            "of: O\n",
            "several: O\n",
            "cytoarchitectonically: O\n",
            "distinct: O\n",
            "subnuclei: O\n",
            "which: O\n",
            "receive: O\n",
            "input: O\n",
            "from: O\n",
            "different: O\n",
            "portions: O\n",
            "of: O\n",
            "the: O\n",
            "primary: O\n",
            "gustatory: O\n",
            "nuclei.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "paraventricular: O\n",
            "nucleus: O\n",
            "of: O\n",
            "the: O\n",
            "hypothalamus: B-Individual_protein\n",
            "(PVN): O\n",
            "modulates: O\n",
            "vagal: O\n",
            "digestive: O\n",
            "motor: O\n",
            "functions: O\n",
            "via: O\n",
            "oxytocinergic: O\n",
            "projections: O\n",
            "to: O\n",
            "the: O\n",
            "nucleus: O\n",
            "of: O\n",
            "the: O\n",
            "solitary: O\n",
            "tract: O\n",
            "(NST): O\n",
            "and: O\n",
            "dorsal: O\n",
            "motor: O\n",
            "nucleus: O\n",
            "of: O\n",
            "the: O\n",
            "vagus: O\n",
            "(DMV): O\n",
            "in: O\n",
            "adult: O\n",
            "rats.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Injections: O\n",
            "of: O\n",
            "WGA/: O\n",
            "horseradish: O\n",
            "peroxidase(HRP): O\n",
            "into: O\n",
            "the: O\n",
            "second: O\n",
            "cervical: O\n",
            "dorsal: O\n",
            "root: O\n",
            "ganglion: O\n",
            "produced: O\n",
            "labeling: O\n",
            "in: O\n",
            "the: O\n",
            "dorsal: O\n",
            "and: O\n",
            "ventral: O\n",
            "horns.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Conversely,: O\n",
            "the: O\n",
            "ventral: O\n",
            "division: O\n",
            "(: O\n",
            "medial: O\n",
            "geniculate: O\n",
            "body(MGB): O\n",
            "v): O\n",
            "projects: O\n",
            "to: O\n",
            "the: O\n",
            "low-frequency,: O\n",
            "but: O\n",
            "not: O\n",
            "the: O\n",
            "high-frequency,: O\n",
            "cortical: O\n",
            "region.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Following: O\n",
            "a: O\n",
            "unilateral: O\n",
            "injection: O\n",
            "of: O\n",
            "3H-leucine: O\n",
            "into: O\n",
            "the: O\n",
            "olfactory: O\n",
            "peduncle,: O\n",
            "radioactively: O\n",
            "labeled: O\n",
            "efferent: O\n",
            "projections: O\n",
            "from: O\n",
            "the: O\n",
            "anterior: O\n",
            "olfactory: O\n",
            "nucleus: O\n",
            "were: O\n",
            "traced: O\n",
            "into: O\n",
            "all: O\n",
            "layers: O\n",
            "of: O\n",
            "the: O\n",
            "ipsilateral: O\n",
            "main: O\n",
            "olfactory: O\n",
            "bulb: O\n",
            "beneath: O\n",
            "the: O\n",
            "olfactory: O\n",
            "nerve: O\n",
            "layer: O\n",
            "and: O\n",
            "through: O\n",
            "the: O\n",
            "ipsilateral: O\n",
            "anterior: O\n",
            "limb: O\n",
            "of: O\n",
            "the: O\n",
            "anterior: O\n",
            "commissure: O\n",
            "and: O\n",
            "plexiform: O\n",
            "layer: O\n",
            "of: O\n",
            "the: O\n",
            "medial: O\n",
            "side: O\n",
            "of: O\n",
            "the: O\n",
            "cerebral: O\n",
            "hemisphere: O\n",
            "to: O\n",
            "the: O\n",
            "deep: O\n",
            "half: O\n",
            "of: O\n",
            "the: O\n",
            "plexiform: O\n",
            "(IB): O\n",
            "and: O\n",
            "pyramidal: O\n",
            "cell: O\n",
            "(II): O\n",
            "layers: O\n",
            "of: O\n",
            "the: O\n",
            "prepyriform: O\n",
            "cortex,: O\n",
            "the: O\n",
            "tenia: O\n",
            "tecta,: O\n",
            "and: O\n",
            "the: O\n",
            "entire: O\n",
            "surface: O\n",
            "of: O\n",
            "the: O\n",
            "olfactory: O\n",
            "tubercle.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "On: O\n",
            "account: O\n",
            "of: O\n",
            "diffusion: O\n",
            "of: O\n",
            "the: O\n",
            "injected: O\n",
            "perosidase: O\n",
            "solution: O\n",
            "in: O\n",
            "the: O\n",
            "folia: O\n",
            "it: O\n",
            "could: O\n",
            "not: O\n",
            "be: O\n",
            "decided: O\n",
            "whether: O\n",
            "the: O\n",
            "different: O\n",
            "olivary: O\n",
            "areas: O\n",
            "project: O\n",
            "to: O\n",
            "particular: O\n",
            "longitudinal: O\n",
            "zones: O\n",
            "in: O\n",
            "the: O\n",
            "paramedian: O\n",
            "lobule.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Quantitative: O\n",
            "analysis: O\n",
            "of: O\n",
            "the: O\n",
            "positions: O\n",
            "and: O\n",
            "numbers: O\n",
            "of: O\n",
            "retrogradely: O\n",
            "labeled: O\n",
            "neurons: O\n",
            "and: O\n",
            "anterogradely: O\n",
            "labeled: O\n",
            "terminal: O\n",
            "fields: O\n",
            "reveal: O\n",
            "that:: O\n",
            "1): O\n",
            "ventral: O\n",
            "posterior: O\n",
            "lateral: O\n",
            "(VPL),: O\n",
            "ventral: O\n",
            "posterior: O\n",
            "inferior: O\n",
            "(VPI),: O\n",
            "and: O\n",
            "central: O\n",
            "lateral: O\n",
            "(CL),: O\n",
            "combined,: O\n",
            "receive: O\n",
            "87%: O\n",
            "of: O\n",
            "spinothalamic: B-Individual_protein\n",
            "inputs: O\n",
            "originating: O\n",
            "from: O\n",
            "the: O\n",
            "cervical: O\n",
            "enlargement;: O\n",
            "2): O\n",
            "these: O\n",
            "three: O\n",
            "nuclei: O\n",
            "contain: O\n",
            "over: O\n",
            "91%: O\n",
            "of: O\n",
            "all: O\n",
            "thalamocortical: O\n",
            "neurons: O\n",
            "projecting: O\n",
            "to: O\n",
            "hSI: O\n",
            "that: O\n",
            "are: O\n",
            "likely: O\n",
            "to: O\n",
            "receive: O\n",
            "STT: O\n",
            "input;: O\n",
            "and: O\n",
            "3): O\n",
            "these: O\n",
            "putatively: O\n",
            "contacted: O\n",
            "neurons: O\n",
            "account: O\n",
            "for: O\n",
            "less: O\n",
            "than: O\n",
            "24%: O\n",
            "of: O\n",
            "all: O\n",
            "thalamic: B-Individual_protein\n",
            "projections: O\n",
            "to: O\n",
            "hSI.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Somatosensory: O\n",
            "cortex: O\n",
            "was: O\n",
            "connected: O\n",
            "mainly: O\n",
            "with: O\n",
            "the: O\n",
            "more: O\n",
            "anterior: O\n",
            "aspect: O\n",
            "of: O\n",
            "the: O\n",
            "hemisphere,: O\n",
            "which: O\n",
            "included: O\n",
            "primary: O\n",
            "motor: O\n",
            "area,: O\n",
            "area: O\n",
            "11,: O\n",
            "and: O\n",
            "area: O\n",
            "13.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "This: O\n",
            "study: O\n",
            "outlines: O\n",
            "the: O\n",
            "vascular: O\n",
            "territories: O\n",
            "of: O\n",
            "the: O\n",
            "cerebral: B-Individual_protein\n",
            "arteries: O\n",
            "that: O\n",
            "originate: O\n",
            "from: O\n",
            "the: O\n",
            "Willis: O\n",
            "circle: O\n",
            "to: O\n",
            "supply: O\n",
            "limbic: O\n",
            "structures: O\n",
            "in: O\n",
            "the: O\n",
            "guinea: O\n",
            "pig: O\n",
            "brain.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Reelin,: O\n",
            "an: O\n",
            "extracellular: O\n",
            "matrix: O\n",
            "molecule,: O\n",
            "regulates: O\n",
            "neuronal: O\n",
            "positioning: O\n",
            "in: O\n",
            "the: O\n",
            "brain,: O\n",
            "brainstem,: O\n",
            "and: O\n",
            "spinal: O\n",
            "cord.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Only: O\n",
            "when: O\n",
            "the: O\n",
            "expression: O\n",
            "level: O\n",
            "of: O\n",
            "ectopic: O\n",
            "reelin: O\n",
            "in: O\n",
            "the: O\n",
            "ventricular: O\n",
            "zone: O\n",
            "became: O\n",
            "very: O\n",
            "weak: O\n",
            "(E18.5): O\n",
            "were: O\n",
            "sympathetic: O\n",
            "preganglionic: O\n",
            "neurons(SPN): O\n",
            "found: O\n",
            "to: O\n",
            "cluster: O\n",
            "near: O\n",
            "the: O\n",
            "central: O\n",
            "canal.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Golgi: O\n",
            "study: O\n",
            "of: O\n",
            "the: O\n",
            "telencephalon: B-Individual_protein\n",
            "of: O\n",
            "the: O\n",
            "small-spotted: O\n",
            "dogfish: O\n",
            "Scyliorhinus: O\n",
            "canicula: O\n",
            "L.: O\n",
            "The: O\n",
            "telencephalon: B-Individual_protein\n",
            "of: O\n",
            "the: O\n",
            "small-spotted: O\n",
            "dogfish,: O\n",
            "Scyliorhinus: O\n",
            "canicula: O\n",
            "L.,: O\n",
            "was: O\n",
            "examined: O\n",
            "by: O\n",
            "Nissl: O\n",
            "and: O\n",
            "Golgi-aldehyde: O\n",
            "techniques.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "p75: O\n",
            "null-mutant: O\n",
            "and: O\n",
            "wild: O\n",
            "type: O\n",
            "litter: O\n",
            "mate: O\n",
            "mice: O\n",
            "were: O\n",
            "assessed: O\n",
            "for: O\n",
            "central: O\n",
            "cholinergic: O\n",
            "deficit: O\n",
            "by: O\n",
            "using: O\n",
            "quantitative: O\n",
            "stereology: O\n",
            "to: O\n",
            "estimate: O\n",
            "the: O\n",
            "total: O\n",
            "neuronal: O\n",
            "number: O\n",
            "in: O\n",
            "basal: O\n",
            "forebrain: O\n",
            "and: O\n",
            "striatum: B-Individual_protein\n",
            "and: O\n",
            "for: O\n",
            "subpopulations: O\n",
            "expressing: O\n",
            "the: O\n",
            "high-affinity: O\n",
            "tyrosine: O\n",
            "receptor: O\n",
            "kinase: O\n",
            "A: O\n",
            "(trkA): O\n",
            "neurotrophin: O\n",
            "receptor: O\n",
            "and: O\n",
            "choline: O\n",
            "acetyltransferase: O\n",
            "(ChAT).: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Approximately: O\n",
            "52%: O\n",
            "of: O\n",
            "the: O\n",
            "serotonergic: O\n",
            "neurons: O\n",
            "in: O\n",
            "the: O\n",
            "wallaby: O\n",
            "brainstem: B-Individual_protein\n",
            "were: O\n",
            "located: O\n",
            "in: O\n",
            "the: O\n",
            "rostral: O\n",
            "midline: O\n",
            "nuclei: O\n",
            "(caudal: O\n",
            "linear: O\n",
            "nucleus,: O\n",
            "dorsal,: O\n",
            "median,: O\n",
            "and: O\n",
            "pontine: B-Individual_protein\n",
            "raphe: O\n",
            "nuclei: O\n",
            "and: O\n",
            "the: O\n",
            "interpeduncular: O\n",
            "nucleus),: O\n",
            "whereas: O\n",
            "21%: O\n",
            "were: O\n",
            "found: O\n",
            "in: O\n",
            "the: O\n",
            "caudal: O\n",
            "midline: O\n",
            "region: O\n",
            "(nuclei: O\n",
            "raphe: O\n",
            "magnus,: O\n",
            "obscurus,: O\n",
            "and: O\n",
            "pallidus).: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Here: O\n",
            "we: O\n",
            "analyze: O\n",
            "the: O\n",
            "role: O\n",
            "of: O\n",
            "the: O\n",
            "Lhx6: O\n",
            "lim-homeobox: O\n",
            "transcription: O\n",
            "factor: O\n",
            "in: O\n",
            "regulating: O\n",
            "the: O\n",
            "development: O\n",
            "of: O\n",
            "subsets: O\n",
            "of: O\n",
            "neocortical,: O\n",
            "hippocampal,: O\n",
            "and: O\n",
            "striatal: B-Individual_protein\n",
            "interneurons.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Tyrosine: O\n",
            "hydroxylase-immunoreactive: O\n",
            "elements: O\n",
            "in: O\n",
            "the: O\n",
            "human: O\n",
            "globus: O\n",
            "pallidus: O\n",
            "and: O\n",
            "subthalamic: O\n",
            "nucleus.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "In: O\n",
            "contrast: O\n",
            "to: O\n",
            "the: O\n",
            "well-established: O\n",
            "dopaminergic: O\n",
            "innervation: O\n",
            "of: O\n",
            "the: O\n",
            "neostriatum,: B-Individual_protein\n",
            "the: O\n",
            "existence: O\n",
            "of: O\n",
            "dopaminergic: O\n",
            "innervation: O\n",
            "of: O\n",
            "the: O\n",
            "subthalamic: O\n",
            "nucleus: O\n",
            "and: O\n",
            "globus: O\n",
            "pallidus: O\n",
            "is: O\n",
            "controversial.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Tracer: O\n",
            "injections: O\n",
            "in: O\n",
            "the: O\n",
            "pre-: O\n",
            "supplementary: O\n",
            "motor: O\n",
            "area(SMA): O\n",
            "or: O\n",
            "in: O\n",
            "supplementary: O\n",
            "motor: O\n",
            "area(SMA): O\n",
            "-proper: O\n",
            "resulted: O\n",
            "in: O\n",
            "significant: O\n",
            "numbers: O\n",
            "of: O\n",
            "labeled: O\n",
            "neurons: O\n",
            "in: O\n",
            "the: O\n",
            "opposite: O\n",
            "supplementary: O\n",
            "motor: O\n",
            "area(SMA): O\n",
            ",: O\n",
            "premotor: O\n",
            "cortex: O\n",
            "(PM),: O\n",
            "cingulate: O\n",
            "motor: O\n",
            "areas: O\n",
            "(CMA),: O\n",
            "and: O\n",
            "cingulate: O\n",
            "gyrus.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "In: O\n",
            "addition,: O\n",
            "the: O\n",
            "pre-: O\n",
            "supplementary: O\n",
            "motor: O\n",
            "area(SMA): O\n",
            ",: O\n",
            "but: O\n",
            "not: O\n",
            "the: O\n",
            "supplementary: O\n",
            "motor: O\n",
            "area(SMA): O\n",
            "-proper,: O\n",
            "receives: O\n",
            "callosal: B-Individual_protein\n",
            "inputs: O\n",
            "from: O\n",
            "the: O\n",
            "prefrontal: O\n",
            "cortex.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "These: O\n",
            "topographically: O\n",
            "organized: O\n",
            "pathways: O\n",
            "also: O\n",
            "provide: O\n",
            "a: O\n",
            "route: O\n",
            "by: O\n",
            "means: O\n",
            "of: O\n",
            "which: O\n",
            "the: O\n",
            "claustrum: B-Individual_protein\n",
            "and: O\n",
            "the: O\n",
            "endopiriform: O\n",
            "nucleus: O\n",
            "have: O\n",
            "access: O\n",
            "to: O\n",
            "inputs: O\n",
            "from: O\n",
            "the: O\n",
            "amygdaloid: B-Individual_protein\n",
            "networks: O\n",
            "that: O\n",
            "process: O\n",
            "emotionally: O\n",
            "significant: O\n",
            "information.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "To: O\n",
            "understand: O\n",
            "in: O\n",
            "detail: O\n",
            "the: O\n",
            "pattern: O\n",
            "of: O\n",
            "reelin: O\n",
            "synthesis: O\n",
            "in: O\n",
            "gamma-aminobutyric: O\n",
            "acid(GABA): O\n",
            "ergic: O\n",
            "interneurons: O\n",
            "of: O\n",
            "primate: O\n",
            "neocortex,: B-Individual_protein\n",
            "a: O\n",
            "quantitative: O\n",
            "analysis: O\n",
            "of: O\n",
            "reelin: O\n",
            "and: O\n",
            "of: O\n",
            "glutamic: O\n",
            "acid: O\n",
            "decarboxylase-67: O\n",
            "(GAD(67)): O\n",
            "mRNA-positive: O\n",
            "neurons: O\n",
            "as: O\n",
            "well: O\n",
            "as: O\n",
            "a: O\n",
            "quantitative: O\n",
            "analysis: O\n",
            "of: O\n",
            "total: O\n",
            "neuronal: O\n",
            "density: O\n",
            "measured: O\n",
            "by: O\n",
            "neuron-specific: O\n",
            "nuclear: O\n",
            "protein: O\n",
            "(NeuN): O\n",
            "immunoreactivity: O\n",
            "was: O\n",
            "carried: O\n",
            "out: O\n",
            "in: O\n",
            "Patas: O\n",
            "monkey: O\n",
            "neocortex: B-Individual_protein\n",
            "(Brodmann's: O\n",
            "areas: O\n",
            "2,: O\n",
            "3,: O\n",
            "4,: O\n",
            "6,: O\n",
            "9,: O\n",
            "17,: O\n",
            "18,: O\n",
            "and: O\n",
            "24).: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "projection: O\n",
            "of: O\n",
            "cat: O\n",
            "retinal: B-Individual_protein\n",
            "ganglion: O\n",
            "cells: O\n",
            "to: O\n",
            "the: O\n",
            "thalamus: B-Individual_protein\n",
            "was: O\n",
            "examined: O\n",
            "using: O\n",
            "the: O\n",
            "method: O\n",
            "of: O\n",
            "retrograde: O\n",
            "axonal: O\n",
            "transport: O\n",
            "of: O\n",
            "horseradish: O\n",
            "peroxidase: O\n",
            "(HRP).: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Morphological: O\n",
            "characterization: O\n",
            "of: O\n",
            "spinal: O\n",
            "cord: O\n",
            "dorsal: O\n",
            "horn: O\n",
            "lamina: O\n",
            "I: O\n",
            "neurons: O\n",
            "projecting: O\n",
            "to: O\n",
            "the: O\n",
            "parabrachial: O\n",
            "nucleus: O\n",
            "in: O\n",
            "the: O\n",
            "rat.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "In: O\n",
            "general,: O\n",
            "our: O\n",
            "results: O\n",
            "indicate: O\n",
            "that: O\n",
            "various: O\n",
            "brainstem: O\n",
            "nuclei: O\n",
            "project: O\n",
            "to: O\n",
            "particular: O\n",
            "territories: O\n",
            "of: O\n",
            "the: O\n",
            "thalamic: O\n",
            "reticular: O\n",
            "nucleus.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "We: O\n",
            "term: O\n",
            "these: O\n",
            "compartments: O\n",
            "physiological: O\n",
            "ocular: O\n",
            "dominance: O\n",
            "columns(ODCs): O\n",
            ",: O\n",
            "in: O\n",
            "contrast: O\n",
            "to: O\n",
            "the: O\n",
            "anatomical: O\n",
            "ocular: O\n",
            "dominance: O\n",
            "columns(ODCs): O\n",
            "of: O\n",
            "most: O\n",
            "primates.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Patterns: O\n",
            "of: O\n",
            "connections: O\n",
            "between: O\n",
            "zona: O\n",
            "incerta: O\n",
            "and: O\n",
            "brainstem: B-Individual_protein\n",
            "in: O\n",
            "rats.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Small: O\n",
            "subclass: O\n",
            "of: O\n",
            "rat: O\n",
            "olfactory: B-Individual_protein\n",
            "neurons: O\n",
            "with: O\n",
            "specific: O\n",
            "bulbar: B-Individual_protein\n",
            "projections: O\n",
            "is: O\n",
            "reactive: O\n",
            "with: O\n",
            "monoclonal: O\n",
            "antibodies: O\n",
            "to: O\n",
            "the: O\n",
            "HSP70: O\n",
            "heat: O\n",
            "shock: O\n",
            "protein.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Medial: O\n",
            "area: O\n",
            "3: O\n",
            "is: O\n",
            "mainly: O\n",
            "connected: O\n",
            "to: O\n",
            "medial: O\n",
            "and: O\n",
            "dorsal: O\n",
            "sensory: O\n",
            "areas: O\n",
            "3,: O\n",
            "1,: O\n",
            "2,: O\n",
            "5,: O\n",
            "and: O\n",
            "sensory: O\n",
            "area(SSA): O\n",
            "and: O\n",
            "to: O\n",
            "areas: O\n",
            "4: O\n",
            "and: O\n",
            "6: O\n",
            "as: O\n",
            "well: O\n",
            "as: O\n",
            "to: O\n",
            "supplementary: O\n",
            "(M2: O\n",
            "or: O\n",
            "area: O\n",
            "6m),: O\n",
            "rostral: O\n",
            "cingulate: O\n",
            "(M3: O\n",
            "or: O\n",
            "areas: O\n",
            "24c: O\n",
            "and: O\n",
            "d),: O\n",
            "and: O\n",
            "caudal: O\n",
            "cingulate: O\n",
            "(M4: O\n",
            "or: O\n",
            "areas: O\n",
            "23c: O\n",
            "and: O\n",
            "d): O\n",
            "motor: O\n",
            "cortices.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Basal: O\n",
            "forebrain: O\n",
            "cholinergic: O\n",
            "neurons: O\n",
            "project: O\n",
            "to: O\n",
            "the: O\n",
            "hippocampus: B-Individual_protein\n",
            "and: O\n",
            "cerebral: O\n",
            "cortex: O\n",
            "where: O\n",
            "they: O\n",
            "play: O\n",
            "an: O\n",
            "important: O\n",
            "role: O\n",
            "in: O\n",
            "cortical: B-Individual_protein\n",
            "activation,: O\n",
            "attention,: O\n",
            "and: O\n",
            "memory.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Previous: O\n",
            "studies: O\n",
            "in: O\n",
            "the: O\n",
            "rat: O\n",
            "have: O\n",
            "shown: O\n",
            "that: O\n",
            "the: O\n",
            "neocortical: O\n",
            "dopaminergic: O\n",
            "afferents,: O\n",
            "originating: O\n",
            "in: O\n",
            "the: O\n",
            "mesencephalon,: B-Individual_protein\n",
            "terminate: O\n",
            "in: O\n",
            "those: O\n",
            "areas: O\n",
            "of: O\n",
            "the: O\n",
            "frontal: O\n",
            "lobe: O\n",
            "which: O\n",
            "receive: O\n",
            "projections: O\n",
            "from: O\n",
            "the: O\n",
            "mediodorsal: O\n",
            "thalamic: O\n",
            "nucleus: O\n",
            "i.e.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "results: O\n",
            "of: O\n",
            "this: O\n",
            "study: O\n",
            "suggest: O\n",
            "that: O\n",
            "the: O\n",
            "dorsal: O\n",
            "cochlear: O\n",
            "nucleus(DCN): O\n",
            "does: O\n",
            "not: O\n",
            "exhibit: O\n",
            "the: O\n",
            "type: O\n",
            "of: O\n",
            "plasticity: O\n",
            "that: O\n",
            "has: O\n",
            "been: O\n",
            "found: O\n",
            "in: O\n",
            "the: O\n",
            "auditory: O\n",
            "cortex: O\n",
            "and: O\n",
            "midbrain;: O\n",
            "therefore,: O\n",
            "it: O\n",
            "does: O\n",
            "not: O\n",
            "account: O\n",
            "for: O\n",
            "the: O\n",
            "changes: O\n",
            "in: O\n",
            "responsiveness: O\n",
            "observed: O\n",
            "in: O\n",
            "the: O\n",
            "higher: O\n",
            "level: O\n",
            "structures: O\n",
            "under: O\n",
            "similar: O\n",
            "experimental: O\n",
            "conditions.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "medial: O\n",
            "preoptic: O\n",
            "area: O\n",
            "and: O\n",
            "medial: O\n",
            "hypothalamic: O\n",
            "nuclei,: O\n",
            "including: O\n",
            "the: O\n",
            "paraventricular,: B-Individual_protein\n",
            "ventromedial,: B-Individual_protein\n",
            "arcuate,: O\n",
            "premammillary,: O\n",
            "and: O\n",
            "supramammillary: O\n",
            "nuclei,: O\n",
            "project: O\n",
            "most: O\n",
            "heavily: O\n",
            "to: O\n",
            "a: O\n",
            "region: O\n",
            "of: O\n",
            "the: O\n",
            "amygdala: B-Individual_protein\n",
            "which: O\n",
            "includes: O\n",
            "the: O\n",
            "medial: O\n",
            "and: O\n",
            "the: O\n",
            "medial: O\n",
            "central: O\n",
            "nuclei.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Caudally: O\n",
            "in: O\n",
            "the: O\n",
            "ventral: O\n",
            "thalamus: O\n",
            "the: O\n",
            "subparafascicular: O\n",
            "and: O\n",
            "peripeduncular: O\n",
            "nuclei: O\n",
            "have: O\n",
            "been: O\n",
            "found: O\n",
            "to: O\n",
            "project: O\n",
            "to: O\n",
            "the: O\n",
            "medial,: O\n",
            "central,: O\n",
            "lateral,: O\n",
            "and: O\n",
            "cortical: O\n",
            "nuclei.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Finally,: O\n",
            "a: O\n",
            "dysgranular: O\n",
            "temporal: O\n",
            "polar: O\n",
            "cortex(TPC): O\n",
            "region: O\n",
            "that: O\n",
            "capped: O\n",
            "the: O\n",
            "tip: O\n",
            "with: O\n",
            "some: O\n",
            "extension: O\n",
            "into: O\n",
            "the: O\n",
            "dorsal: O\n",
            "aspect: O\n",
            "of: O\n",
            "the: O\n",
            "temporal: O\n",
            "polar: O\n",
            "cortex(TPC): O\n",
            "is: O\n",
            "defined: O\n",
            "as: O\n",
            "temporopolar: O\n",
            "area: O\n",
            "TG.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "afferent: O\n",
            "projections: O\n",
            "from: O\n",
            "the: O\n",
            "brainstem: B-Individual_protein\n",
            "to: O\n",
            "the: O\n",
            "mediodorsal: O\n",
            "thalamic: O\n",
            "nucleus: O\n",
            "(MD): O\n",
            "were: O\n",
            "studied: O\n",
            "in: O\n",
            "the: O\n",
            "cat,: O\n",
            "by: O\n",
            "means: O\n",
            "of: O\n",
            "retrograde: O\n",
            "transport: O\n",
            "of: O\n",
            "horseradish: O\n",
            "peroxidase.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Large: O\n",
            "numbers: O\n",
            "of: O\n",
            "axons: O\n",
            "entered: O\n",
            "and: O\n",
            "left: O\n",
            "paraventricular: O\n",
            "nucleus(PVN): O\n",
            "ventrally: O\n",
            "near: O\n",
            "the: O\n",
            "midline: O\n",
            "and: O\n",
            "laterally: O\n",
            "in: O\n",
            "the: O\n",
            "area: O\n",
            "of: O\n",
            "the: O\n",
            "posterolateral: O\n",
            "paraventricular: O\n",
            "nucleus(PVN): O\n",
            ";: O\n",
            "axons: O\n",
            "generally: O\n",
            "were: O\n",
            "oriented: O\n",
            "parallel: O\n",
            "to: O\n",
            "the: O\n",
            "mean: O\n",
            "major: O\n",
            "axis: O\n",
            "of: O\n",
            "dendritic: O\n",
            "trees: O\n",
            "in: O\n",
            "these: O\n",
            "areas.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Ultrastructural: O\n",
            "study: O\n",
            "of: O\n",
            "cholecystokinin-immunoreactive: O\n",
            "cells: O\n",
            "and: O\n",
            "processes: O\n",
            "in: O\n",
            "area: O\n",
            "CA1: O\n",
            "of: O\n",
            "the: O\n",
            "rat: O\n",
            "hippocampus.: B-Individual_protein\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "The: O\n",
            "results: O\n",
            "show: O\n",
            "that: O\n",
            "this: O\n",
            "aldolase: O\n",
            "C: O\n",
            "isoenzyme: O\n",
            "is: O\n",
            "another: O\n",
            "protein: O\n",
            "that: O\n",
            "is: O\n",
            "selectively: O\n",
            "expressed: O\n",
            "by: O\n",
            "the: O\n",
            "cerebellum: B-Individual_protein\n",
            "and: O\n",
            "retina.: B-Individual_protein\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "Our: O\n",
            "results: O\n",
            "suggest: O\n",
            "enkephalin: O\n",
            "fibers: O\n",
            "in: O\n",
            "thoracolumbar: B-Individual_protein\n",
            "sympathetic: O\n",
            "nuclei: O\n",
            "are: O\n",
            "of: O\n",
            "both: O\n",
            "supraspinal: O\n",
            "and: O\n",
            "intraspinal: O\n",
            "origin,: O\n",
            "whereas: O\n",
            "the: O\n",
            "enkephalin: O\n",
            "innervation: O\n",
            "of: O\n",
            "the: O\n",
            "sacral: O\n",
            "parasympathetic: O\n",
            "nucleus: O\n",
            "is: O\n",
            "primarily: O\n",
            "intraspinal: O\n",
            "in: O\n",
            "origin.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "We: O\n",
            "have: O\n",
            "reevaluated: O\n",
            "the: O\n",
            "outgrowth: O\n",
            "of: O\n",
            "fetal: O\n",
            "rat: O\n",
            "suprachiasmatic: O\n",
            "nucleus(SCN): O\n",
            "/AH: O\n",
            "grafts: O\n",
            "implanted: O\n",
            "in: O\n",
            "the: O\n",
            "third: O\n",
            "ventricle: O\n",
            "of: O\n",
            "hamsters: O\n",
            "by: O\n",
            "using: O\n",
            "two: O\n",
            "methods:: O\n",
            "the: O\n",
            "carbocyanine: O\n",
            "dye,: O\n",
            "1,1'dioctadecyl-3,3'-tetramethylindocarbocyanine: O\n",
            "percholate: O\n",
            "(DiI),: O\n",
            "was: O\n",
            "placed: O\n",
            "directly: O\n",
            "onto: O\n",
            "grafted: O\n",
            "tissue;: O\n",
            "and: O\n",
            "a: O\n",
            "donor-specific: O\n",
            "neurofilament: O\n",
            "marker: O\n",
            "was: O\n",
            "used: O\n",
            "in: O\n",
            "conjunction: O\n",
            "with: O\n",
            "xenografts.: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n",
            "suprachiasmatic: O\n",
            "nucleus(SCN): O\n",
            "/AH: O\n",
            "graft: O\n",
            "efferents: O\n",
            "project: O\n",
            "into: O\n",
            "areas: O\n",
            "normally: O\n",
            "innervated: O\n",
            "by: O\n",
            "the: O\n",
            "intact: O\n",
            "suprachiasmatic: O\n",
            "nucleus(SCN): O\n",
            ".: O\n",
            "\n",
            "--- End of Sentence ---\n",
            "\n"
          ]
        }
      ]
    },
    {
      "cell_type": "code",
      "source": [
        "with open(\"predicted_results.txt\", \"w\") as file:\n",
        "    for sentence, predicted_labels in zip(new_sentences, new_predictions):\n",
        "        for word, prediction in zip(sentence, predicted_labels):\n",
        "            file.write(f\"{word[0]}: {prediction}\\n\")\n",
        "        file.write(\"\\n--- End of Sentence ---\\n\\n\")"
      ],
      "metadata": {
        "id": "AD3I6ynZBUjy"
      },
      "execution_count": 11,
      "outputs": []
    },
    {
      "cell_type": "code",
      "source": [
        "from sklearn.metrics import classification_report"
      ],
      "metadata": {
        "id": "foYXs63UC5PQ"
      },
      "execution_count": 12,
      "outputs": []
    },
    {
      "cell_type": "code",
      "source": [
        "# Flatten the test set labels and predictions\n",
        "y_test_flat = [label for sentence in y_test for label in sentence]\n",
        "y_pred_flat = [label for sentence in y_pred for label in sentence]"
      ],
      "metadata": {
        "id": "6fV4WuJJDCA-"
      },
      "execution_count": 13,
      "outputs": []
    },
    {
      "cell_type": "code",
      "source": [
        "print(classification_report(y_test_flat, y_pred_flat))"
      ],
      "metadata": {
        "colab": {
          "base_uri": "https://localhost:8080/"
        },
        "id": "vQIoU5SQDECr",
        "outputId": "0f7e20d5-6270-4120-d886-be829058f665"
      },
      "execution_count": 14,
      "outputs": [
        {
          "output_type": "stream",
          "name": "stdout",
          "text": [
            "                      precision    recall  f1-score   support\n",
            "\n",
            "B-Individual_protein       0.85      0.56      0.68       807\n",
            "                   O       0.99      1.00      0.99     25504\n",
            "\n",
            "            accuracy                           0.98     26311\n",
            "           macro avg       0.92      0.78      0.83     26311\n",
            "        weighted avg       0.98      0.98      0.98     26311\n",
            "\n"
          ]
        }
      ]
    }
  ]
}