DESCRIPTION

Package: LocalizedMarkerDetector
Title: Localized Marker Detector
Version: 1.0.0
Authors@R: 
    c(person(given = "Ruiqi",
           family = "Li",
           role = c("aut", "cre"),
           email = "ruiqi.li@yale.edu",
           comment = c(ORCID = "0000-0002-9053-1678")),
    person(given = "Rihao",
           family = "Qu",
           role = c("aut", "ctb"),
           email = "rihao.qu@yale.edu",
           comment = c(ORCID = "0000-0002-8258-8287")),
    person(given = "Francesco",
           family = "Strino",
           role = c("aut", "ctb"),
           email = "francesco.strino@pcmgf.com",
           comment = c(ORCID = "0000-0002-9310-4794")))
Description: Localized Marker Detector (LMD) is a computational framework designed for the identification of gene expression markers localized to specific cell populations within single-cell RNA sequencing data. 
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://KlugerLab.github.io/LocalizedMarkerDetector/, https://github.com/KlugerLab/LocalizedMarkerDetector
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: 
    R (>= 4.0)
Imports:
  Seurat (>= 4.0),
  SeuratObject,
  Matrix (>= 1.6),
  igraph,
  ggplot2, 
  cowplot, 
  RColorBrewer, 
  scales,
  data.table, 
  dplyr, 
  patchwork, 
  philentropy,
  pheatmap, 
  dynamicTreeCut,
  ggplotify, 
  ggraph, 
  ClusterR (>= 1.3),
  Rcpp (>= 0.12.16),
  RcppArmadillo, 
  tictoc,
  svMisc,
  RSpectra,
  usedist,
  dendextend,
  progress,
  latex2exp,
  parallel,
  dbscan,
  Rtsne,
  ggrepel, 
  BiocManager, 
  remotes
LinkingTo: Rcpp, RcppArmadillo
Suggests: 
  knitr,
  rmarkdown
VignetteBuilder: knitr