This contains materials related to tedana and multi-echo fMRI presented at the Organization for Human Brain Mapping 2023 Annual Meeting
This is a place to centralize multi-echo related content at OHBM 2023. If you see or have a poster or presentation using multi-echo fMRI, submit a pull request or comment on issue #1 to have it added.
Characterizing the Effects of Multiecho and Multiband Imaging on Corticostriatal Responses to Reward
David Smith, Jeffrey Dennison, Ori Zaff, James Wyngaarden, Makayla Collins, Logan Dowdle, Johanna Jarcho, Ingrid Olson, Ben Inglis, Paul Morgan, Chris Rorden, Dominic Fareri
Talk Wed, 7/26, 10:30 AM - 11:45 AM, Palais, Room 513
Poster TuWed 1958
Open Science Room Emergent Session: Physiopy open meeting: physiology community practices + Challenges for small collaborative software projects
Panel Discussion Tues, 7/25, 14:25 - 16:15
In Open Science Room or Join on Crowdcast
By the Physiopy community, the tedana community, and the neurokit project, hosted by Stefano Moia, Ecole Polytechnique Federale de Lausanne, and Daniel Handwerker, Section on Functional Imaging Methods, NIMH.
With the spread of open science practices, new ways of collaborating on scientific projects are taking root. One of these are international, cross-lab communities that gather around community practices, documentation, and software development. While there are great examples of large, stable international collaborations, consortia, and community-developed projects (e.g. BIDS, nipreps, The Touring Way, ...), methods development often happens in smaller projects united by a specialized need.
This emergent session is dedicated to these smaller realities. In the first part (first 45 minutes), you are invited to partake in an open community meeting centered on Physiopy and engage in a discussion of community practices, specifically about physiological topics. In the second part (second 45 minutes), we will reflect across communities on what are the challenges these types of collaborations face, our challenges and successes, and how we can deal with them.
Tedana Community: Peter A. Bandettini, Logan Dowdle, Elizabeth DuPre, Javier Gonzalez-Castillo, Daniel Handwerker, Angela Laird, Kasamba Lumwagi, Stefano Moia, Neha Reddy, Taylor Salo, Joshua Teves, Eneko Uruñuela
Poster SuMon 130
Sample interactive reports from tedana: All reports use a block design flashing checkerboard task with 5 echoes. The reports were generated using process_5echo_blockdesign.ipynb
- Results using the kundu decision tree
- Results using the minimal decision tree
- Results using ica_reclassify to change a component classification after the kundu decision tree
Neha Reddy, Kristina Zvolanek, Stefano Moia, César Caballero-Gaudes, Molly Bright
Poster SuMon 115
Sarah Goodale, Jennifer Evans, Jacco de Zwart, Pinar Ozbay, Dante Picchioni, Jeff Duyn, Dario Englot, Victoria Morgan, Jingyuan Chen, Gary Glover, Catie Chang
Poster SunMon 529
Neha Reddy, Rebecca Clements, Molly Bright
Poster SuMon 732
Amyn Majbri, Lanxin Ji, Ellyn Kennelly, Cassandra Hendrix, Tanya Bhatia, Mark Duffy, Moriah Thomason
Poster SuMon 775
Zhishun Wang, Feng Liu, Gaurav Patel, Rachel Marsh, Jack Grinband
Poster SuMon 795
Micah Holness, Joshua B. Teves, Tyler Morgan, Gang Chen, Javier Gonzalez-Castillo, Peter A. Bandettini, Daniel A. Handwerker
Poster SuMon 911
Matthias Müller-Schrader, Frederike Petzschner, Jakob Heinzle, Lars Kasper, Katharina Wellstein, Johanna Bayer, Maria Engel, Klaas P Pruessmann, Klaas E. Stephan
(Anatomical multi-echo)
Poster SuMon 160
Jing Zhang, David Shin, Suchandrima Banerjee
(Anatomical multi-echo)
Poster SuMon 1054
Leonardo Novelli, Adeel Razi
Poster SuMon 1153
Daehun Kang, Kirk Welker, Myung-Ho In, Dora Hermes, John III Huston, Matt Bernstein, Yunhong Shu
Poster SuMon 1155
Miriam Taza, Taylor Schmitz, Roni Setton, Laetitia Mwilambwe-Tshilobo, Gary Turner, R. Nathan Spreng
Poster TuWed 2264