From 1d6e6b18c8d6be6151b976c9dc6c7269bc957dbc Mon Sep 17 00:00:00 2001 From: wpbonelli Date: Wed, 17 Apr 2024 13:36:39 -0400 Subject: [PATCH] chore(pixi): use custom install task for internal dev dependencies (#1728) Restore the custom task approach to installing flopy, modflowapi, pymake, and modflow-devtools originally introduced by @Hofer-Julian in #1696. This unlocks them (removes them from pixi.lock) and allows rolling updates in CI, as we had before #1703. Going forward, contributors will need to run `pixi run install` instead of `pixi install` to get a full development environment. Also remove hatchling from pixi.toml as it is not needed. --- .github/workflows/ci.yml | 16 + .github/workflows/compilers.yml | 4 + .github/workflows/docs.yml | 7 + .github/workflows/large.yml | 4 + .github/workflows/release.yml | 4 + DEVELOPER.md | 2 +- pixi.lock | 869 +++++++------------------------- pixi.toml | 19 +- 8 files changed, 231 insertions(+), 694 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 4badf88dfe5..33fc1e55e10 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -129,6 +129,10 @@ jobs: pixi-version: v0.19.1 manifest-path: "modflow6/pixi.toml" + - name: Custom pixi install + working-directory: modflow6 + run: pixi run install + - name: Build test-drive working-directory: test-drive run: | @@ -224,6 +228,10 @@ jobs: pixi-version: v0.19.1 manifest-path: "modflow6/pixi.toml" + - name: Custom pixi install + working-directory: modflow6 + run: pixi run install + - name: Set LDFLAGS (macOS) if: matrix.os == 'macos-14' run: | @@ -346,6 +354,10 @@ jobs: pixi-version: v0.19.1 manifest-path: "modflow6/pixi.toml" + - name: Custom pixi install + working-directory: modflow6 + run: pixi run install + - name: Setup ${{ env.FC }} ${{ env.FC_V }} uses: fortran-lang/setup-fortran@v1 with: @@ -433,6 +445,10 @@ jobs: pixi-version: v0.19.1 manifest-path: "modflow6/pixi.toml" + - name: Custom pixi install + working-directory: modflow6 + run: pixi run install + - name: Test parallel MF6 if: runner.os != 'Windows' uses: ./modflow6/.github/actions/test-par diff --git a/.github/workflows/compilers.yml b/.github/workflows/compilers.yml index 04f81daf980..6bf0a90b522 100644 --- a/.github/workflows/compilers.yml +++ b/.github/workflows/compilers.yml @@ -143,6 +143,10 @@ jobs: pixi-version: v0.19.1 manifest-path: "modflow6/pixi.toml" + - name: Custom pixi install + working-directory: modflow6 + run: pixi run install + - name: Build modflow6 working-directory: modflow6 run: | diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index aefc6e28039..ff92188bbc6 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -47,6 +47,10 @@ jobs: with: pixi-version: v0.19.1 manifest-path: "modflow6/pixi.toml" + + - name: Custom pixi install + working-directory: modflow6 + run: pixi run install - name: Install additional packages for Sphinx using pip working-directory: modflow6/.build_rtd_docs @@ -198,6 +202,9 @@ jobs: with: pixi-version: v0.19.1 + - name: Custom pixi install + run: pixi run install + - name: Print python package versions run: pixi run pip list diff --git a/.github/workflows/large.yml b/.github/workflows/large.yml index 3501c1bb971..bcfa7c34114 100644 --- a/.github/workflows/large.yml +++ b/.github/workflows/large.yml @@ -72,6 +72,10 @@ jobs: pixi-version: v0.19.1 manifest-path: "modflow6/pixi.toml" + - name: Custom pixi install + working-directory: modflow6 + run: pixi run install + - name: Setup ${{ matrix.compiler }} ${{ matrix.version }} uses: fortran-lang/setup-fortran@v1 with: diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index d8a17d14ca7..dc37c16148e 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -104,6 +104,10 @@ jobs: pixi-version: v0.19.1 manifest-path: "modflow6/pixi.toml" + - name: Custom pixi install + working-directory: modflow6 + run: pixi run install + - name: Setup Micromamba uses: mamba-org/setup-micromamba@v1 with: diff --git a/DEVELOPER.md b/DEVELOPER.md index a8b194bef1d..8a9a30df30d 100644 --- a/DEVELOPER.md +++ b/DEVELOPER.md @@ -182,7 +182,7 @@ The following tables are automatically generated by [a CI workflow](.github/work Python 3.8+ is required to run MODFLOW 6 tests. Using Python via Pixi is recommended. Pixi installation docs can be found [here](https://pixi.sh). After installing `pixi`, to set up an environment with all development dependencies, run: ``` -pixi install +pixi run install ``` #### Dependencies diff --git a/pixi.lock b/pixi.lock index b7f989653fb..1ca5a420258 100644 --- a/pixi.lock +++ b/pixi.lock @@ -12,7 +12,7 @@ environments: - conda: https://conda.anaconda.org/conda-forge/linux-64/atk-1.0-2.38.0-hd4edc92_1.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/linux-64/attr-2.5.1-h166bdaf_1.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/noarch/attrs-23.2.0-pyh71513ae_0.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/black-24.3.0-py39hf3d152e_0.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/black-24.4.0-py39hf3d152e_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/bmipy-2.0.1-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-1.1.0-hd590300_1.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-bin-1.1.0-hd590300_1.conda @@ -28,7 +28,6 @@ environments: - conda: https://conda.anaconda.org/conda-forge/linux-64/contourpy-1.2.1-py39h7633fee_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/cycler-0.12.1-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/dbus-1.13.6-h5008d03_3.tar.bz2 - - conda: https://conda.anaconda.org/conda-forge/noarch/editables-0.5-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/exceptiongroup-1.2.0-pyhd8ed1ab_2.conda - conda: https://conda.anaconda.org/conda-forge/noarch/execnet-2.1.1-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/expat-2.6.2-h59595ed_0.conda @@ -51,8 +50,8 @@ environments: - conda: https://conda.anaconda.org/conda-forge/linux-64/gettext-0.22.5-h59595ed_2.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/gettext-tools-0.22.5-h59595ed_2.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/giflib-5.2.2-hd590300_0.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/glib-2.80.0-hf2295e7_4.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/glib-tools-2.80.0-hde27a5a_4.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/glib-2.80.0-hf2295e7_5.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/glib-tools-2.80.0-hde27a5a_5.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/graphite2-1.3.13-h59595ed_1003.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/graphviz-2.50.0-h5abf519_3.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/linux-64/gst-plugins-base-1.24.1-hfa15dee_1.conda @@ -60,10 +59,8 @@ environments: - conda: https://conda.anaconda.org/conda-forge/linux-64/gtk2-2.24.33-h280cfa0_4.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/gts-0.7.6-h977cf35_4.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-8.3.0-h3d44ed6_0.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/hatchling-1.22.5-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/icu-73.2-h59595ed_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/idna-3.6-pyhd8ed1ab_0.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-7.1.0-pyha770c72_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/importlib-resources-6.4.0-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/importlib_resources-6.4.0-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/iniconfig-2.0.0-pyhd8ed1ab_0.conda @@ -103,7 +100,7 @@ environments: - conda: https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-devel-0.22.5-h59595ed_2.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-13.2.0-h69a702a_5.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-13.2.0-ha4646dd_5.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/libglib-2.80.0-hf2295e7_4.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/libglib-2.80.0-hf2295e7_5.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_5.conda - 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name: trove-classifiers - version: 2024.4.10 - build: pyhd8ed1ab_0 - subdir: noarch - noarch: python - url: https://conda.anaconda.org/conda-forge/noarch/trove-classifiers-2024.4.10-pyhd8ed1ab_0.conda - sha256: cbc8e5c5f82b1eeff7aa21aaff77757336c1e6d64a4255b071c783acd60f4618 - md5: 9622d541e2314c0207bebdc0359fa478 - depends: - - python >=3.7 - license: Apache-2.0 - license_family: Apache - purls: - - pkg:pypi/trove-classifiers - size: 18444 - timestamp: 1712814840654 - kind: conda name: typing_extensions version: 4.11.0 @@ -9376,8 +8893,6 @@ packages: - python >=3.8 license: PSF-2.0 license_family: PSF - purls: - - pkg:pypi/typing-extensions size: 37583 timestamp: 1712330089194 - kind: conda @@ -9420,8 +8935,6 @@ packages: - python_abi 3.9.* *_cp39 license: Apache-2.0 license_family: Apache - purls: - - pkg:pypi/unicodedata2 size: 376309 timestamp: 1695848358752 - kind: conda @@ -9440,8 +8953,6 @@ packages: - vc14_runtime >=14.29.30139 license: Apache-2.0 license_family: Apache - purls: - 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purls: - - pkg:pypi/xmipy size: 18460 timestamp: 1681486998644 - kind: conda @@ -10233,8 +9732,6 @@ packages: - python >=3.8 license: MIT license_family: MIT - purls: - - pkg:pypi/zipp size: 18954 timestamp: 1695255262261 - kind: conda diff --git a/pixi.toml b/pixi.toml index 766b352a163..82df3a24b1c 100644 --- a/pixi.toml +++ b/pixi.toml @@ -10,11 +10,9 @@ filelock = "*" flaky = "*" fortran-language-server = "*" fprettify = "*" -hatchling = "*" jupytext = "*" matplotlib = "*" meson = "1.3.0" -mfpymake = "*" networkx = "*" ninja = "*" numpy = "*" @@ -33,12 +31,19 @@ scipy = "*" shapely = "*" xmipy = "*" -[pypi-dependencies] -flopy = { git = "https://github.com/modflowpy/flopy.git" } -modflowapi = { git = "https://github.com/MODFLOW-USGS/modflowapi.git" } -modflow-devtools = { git = "https://github.com/MODFLOW-USGS/modflow-devtools.git" } - [tasks] +# install +install-flopy = "pip install --no-build-isolation --no-deps --disable-pip-version-check git+https://github.com/modflowpy/flopy.git" +install-pymake = "pip install --no-build-isolation --no-deps --disable-pip-version-check git+https://github.com/modflowpy/pymake.git" +install-modflowapi = "pip install --no-build-isolation --no-deps --disable-pip-version-check git+https://github.com/MODFLOW-USGS/modflowapi.git" +install-modflow-devtools = "pip install --no-build-isolation --no-deps --disable-pip-version-check git+https://github.com/MODFLOW-USGS/modflow-devtools.git" +install = { depends_on = [ + "install-flopy", + "install-pymake", + "install-modflowapi", + "install-modflow-devtools", +] } + # format fortran-format-check = "python .github/common/fortran_format_check.py" msvs-vfproj-check = "python .github/common/msvs_vfproj_check.py"