diff --git a/docs/strategies/strategy_02.rst b/docs/strategies/strategy_02.rst index f35fdcf..586ee88 100644 --- a/docs/strategies/strategy_02.rst +++ b/docs/strategies/strategy_02.rst @@ -26,6 +26,7 @@ How to use it ------------- 1. Estimate the mask +^^^^^^^^^^^^^^^^^^^^ To calculate the mask, all you need is your tomogram and the latest TomoTwin model: @@ -34,6 +35,7 @@ To calculate the mask, all you need is your tomogram and the latest TomoTwin mod CUDA_VISIBLE_DEVICES=0,1 tomotwin_tools.py embedding_mask median -i tomo/tomo.mrc -m tomotwin_latest.pth -o mask 2. Calculate the (filtered) embeddings +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ .. prompt:: bash $