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quickly format ALSPAC data #20

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gracemarionpower opened this issue Jan 8, 2024 · 0 comments

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gracemarionpower commented Jan 8, 2024

# Quick alspac format

source config.env

wd="/mnt/storage/private/alspac/1/alspac/studies/latest/alspac/genetic/variants/arrays/gwas/imputed/1000genomes/released/2015-06-25/data/genotypes/bestguess/subset_maf0.01_info0.8"
mkdir -p ${genotype_input_dir}

for i in {01..23}
do
Rscript resources/genotypes/variant_ids.r ${wd}/data_chr${i} ${genotype_input_dir}/data_chr${i}
done

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