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DESCRIPTION
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DESCRIPTION
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Package: DMC
Title: Comparison of different Deconvolution Models in several scenarios
Version: 0.4.1
Authors@R:
person(given = "Tim",
family = "Mirus",
role = c("aut", "cre"),
email = "tim.mirus@stud.uni-regensburg.de"
)
Description: Deconvolute given RNA-Seq bulks using scRNA-Seq profiles and a list
of models. Models must be provided as functions from the user.
In addition, perform different benchmarks by deconvolving artificial bulks
created from single-cell data, including deconvolution with different gene
sets, dependency on training data and simulated subtypes. The user has the
option to exclude cell types from the reference or the simulated bulks.
License: MIT
Encoding: UTF-8
LazyData: true
biocViews:
Depends: ggplot2, Matrix
Imports: DTD, qvalue, DescTools, e1071, rhdf5, parallel,
preprocessCore, Biobase, rmarkdown, digest,
Rtsne, tictoc, umap, uwot, reshape2, multtest, DescTools, GEOquery
Suggests: knitr
RoxygenNote: 7.2.0
Remotes: spang-lab/DTD
VignetteBuilder: knitr