From 0460b2f7aa5a7ad16da9376bc5b0b28d21d514b3 Mon Sep 17 00:00:00 2001 From: Ben Bond-Lamberty Date: Mon, 16 Dec 2024 12:57:38 -0500 Subject: [PATCH] Fix final NOTE and some misspellings --- R/data.R | 26 +++++++++++++------------- man/BAMS_model.Rd | 6 +++--- man/COMISSION_model.Rd | 6 +++--- man/CORPSE_model.Rd | 6 +++--- man/MEMS_model.Rd | 6 +++--- man/MEND_model.Rd | 6 +++--- man/MIMCS_model.Rd | 6 +++--- man/model_configs.Rd | 4 ++-- 8 files changed, 33 insertions(+), 33 deletions(-) diff --git a/R/data.R b/R/data.R index 0bfe65d..abaa1ea 100644 --- a/R/data.R +++ b/R/data.R @@ -45,14 +45,14 @@ #' POM decomposition, and a LM for MB decay, see \link{dynamics} for more #' details. #' -#' @format an object created form \code{configure_model}. +#' @format An object created from \code{configure_model}. #' \describe{ #' \item{name}{MEND} #' \item{table}{table of the dynamics used by this model configuration, see \link{dynamics} for more details.} #' \item{params}{data table of the model parameters, see \link{default_params} for more details.} #' \item{state}{vector of the initial state values, see \link{default_initial} for more details.} #' } -#' @family {configurations} +#' @family configurations #' @references \href{https://doi.org/10.1890/12-0681.1}{Wang et al. 2013} #' @examples #' ## Use solve_model to run the simulation using this configuration. @@ -66,14 +66,14 @@ #' DOM uptake, RMM for POM decomposition, and a LM for MB decay, see \link{dynamics} for more #' details. #' -#' @format an object created form \code{configure_model}, containing the following elements. +#' @format An object created from \code{configure_model}, containing the following elements. #' \describe{ #' \item{name}{COMISSION} #' \item{table}{table of the dynamics used by this model configuration, see \link{dynamics} for more details.} #' \item{params}{data table of the model parameters, see \link{default_params} for more details.} #' \item{state}{vector of the initial state values, see \link{default_initial} for more details.} #' } -#' @family {configurations} +#' @family configurations #' @references \href{https://doi.org/10.1016/j.soilbio.2015.06.008}{Ahrens et al. 2015} #' @examples #' ## Use solve_model to run the simulation using this configuration. @@ -87,14 +87,14 @@ #' DOM uptake, LM for POM decomposition, and a LM for MB decay, see \link{dynamics} for more #' details. #' -#' @format an object created form \code{configure_model}, containing the following elements. +#' @format An object created from \code{configure_model}, containing the following elements. #' \describe{ #' \item{name}{CORPSE} #' \item{table}{table of the dynamics used by this model configuration, see \link{dynamics} for more details.} #' \item{params}{data table of the model parameters, see \link{default_params} for more details.} #' \item{state}{vector of the initial state values, see \link{default_initial} for more details.} #' } -#' @family {configurations} +#' @family configurations #' @references \href{https://doi.org/10.1007/s10533-018-0509-z}{Sulman et al. 2018} #' @examples #' ## Use solve_model to run the simulation using this configuration. @@ -108,14 +108,14 @@ #' uptake, MM for POM decomposition, and a DD for MB decay, see \link{dynamics} for more #' details. #' -#' @format an object created form \code{configure_model}, containing the following elements. +#' @format An object created from \code{configure_model}, containing the following elements. #' \describe{ #' \item{name}{MIMCS} #' \item{table}{table of the dynamics used by this model configuration, see \link{dynamics} for more details.} #' \item{params}{data table of the model parameters, see \link{default_params} for more details.} #' \item{state}{vector of the initial state values, see \link{default_initial} for more details.} #' } -#' @family {configurations} +#' @family configurations #' @references \href{https://doi.org/10.1002/2015GB005188}{Wieder et al. 2015} #' @examples #' ## Use solve_model to run the simulation using this configuration. @@ -129,14 +129,14 @@ #' uptake, LM for POM decomposition, and a LM for MB decay, see \link{dynamics} for more #' details. #' -#' @format an object created form \code{configure_model}, containing the following elements. +#' @format An object created from \code{configure_model}, containing the following elements. #' \describe{ #' \item{name}{MEMS} #' \item{table}{table of the dynamics used by this model configuration, see \link{dynamics} for more details.} #' \item{params}{data table of the model parameters, see \link{default_params} for more details.} #' \item{state}{vector of the initial state values, see \link{default_initial} for more details.} #' } -#' @family {configurations} +#' @family configurations #' @references \href{https://doi.org/10.5194/bg-16-1225-2019}{Robertson et al. 2019} #' @examples #' ## Use solve_model to run the simulation using this configuration. @@ -150,14 +150,14 @@ #' uptake, MM for POM decomposition, and a LM for MB decay, see \link{dynamics} for more #' details. #' -#' @format an object created form \code{configure_model}, containing the following elements. +#' @format An object created from \code{configure_model}, containing the following elements. #' \describe{ #' \item{name}{BAMS} #' \item{table}{table of the dynamics used by this model configuration, see \link{dynamics} for more details.} #' \item{params}{data table of the model parameters, see \link{default_params} for more details.} #' \item{state}{vector of the initial state values, see \link{default_initial} for more details.} #' } -#' @family {configurations} +#' @family configurations #' @references \href{https://doi.org/10.5194/bg-16-1225-2019}{Robertson et al. 2019} #' @examples #' ## Use solve_model to run the simulation using this configuration. @@ -176,7 +176,7 @@ #' \item{POMdecomp}{POM decomposition, see \link{dynamics} for more details.} #' \item{MBdecay}{microbial biomass decay, see \link{default_initial} for more details.} #' } -#' @family {configurations} +#' @family configurations #' @examples #' print(model_configs) "model_configs" diff --git a/man/BAMS_model.Rd b/man/BAMS_model.Rd index e86732f..52b03d9 100644 --- a/man/BAMS_model.Rd +++ b/man/BAMS_model.Rd @@ -5,7 +5,7 @@ \alias{BAMS_model} \title{The MEMC model configuration for BAMS} \format{ -an object created form \code{configure_model}, containing the following elements. +An object created from \code{configure_model}, containing the following elements. \describe{ \item{name}{BAMS} \item{table}{table of the dynamics used by this model configuration, see \link{dynamics} for more details.} @@ -30,7 +30,7 @@ solve_model(mod = MEMS_model, time = 1:10) \href{https://doi.org/10.5194/bg-16-1225-2019}{Robertson et al. 2019} } \seealso{ -Other {configurations}: +Other configurations: \code{\link{COMISSION_model}}, \code{\link{CORPSE_model}}, \code{\link{MEMS_model}}, @@ -38,5 +38,5 @@ Other {configurations}: \code{\link{MIMCS_model}}, \code{\link{model_configs}} } -\concept{{configurations}} +\concept{configurations} \keyword{datasets} diff --git a/man/COMISSION_model.Rd b/man/COMISSION_model.Rd index 7cd79c6..a7c2f9c 100644 --- a/man/COMISSION_model.Rd +++ b/man/COMISSION_model.Rd @@ -5,7 +5,7 @@ \alias{COMISSION_model} \title{The MEMC model configuration for COMISSION} \format{ -an object created form \code{configure_model}, containing the following elements. +An object created from \code{configure_model}, containing the following elements. \describe{ \item{name}{COMISSION} \item{table}{table of the dynamics used by this model configuration, see \link{dynamics} for more details.} @@ -30,7 +30,7 @@ solve_model(mod = COMISSION_model, time = 1:10) \href{https://doi.org/10.1016/j.soilbio.2015.06.008}{Ahrens et al. 2015} } \seealso{ -Other {configurations}: +Other configurations: \code{\link{BAMS_model}}, \code{\link{CORPSE_model}}, \code{\link{MEMS_model}}, @@ -38,5 +38,5 @@ Other {configurations}: \code{\link{MIMCS_model}}, \code{\link{model_configs}} } -\concept{{configurations}} +\concept{configurations} \keyword{datasets} diff --git a/man/CORPSE_model.Rd b/man/CORPSE_model.Rd index 764ab9d..e9ec945 100644 --- a/man/CORPSE_model.Rd +++ b/man/CORPSE_model.Rd @@ -5,7 +5,7 @@ \alias{CORPSE_model} \title{The MEMC model configuration for CORPSE} \format{ -an object created form \code{configure_model}, containing the following elements. +An object created from \code{configure_model}, containing the following elements. \describe{ \item{name}{CORPSE} \item{table}{table of the dynamics used by this model configuration, see \link{dynamics} for more details.} @@ -30,7 +30,7 @@ solve_model(mod = CORPSE_model, time = 1:10) \href{https://doi.org/10.1007/s10533-018-0509-z}{Sulman et al. 2018} } \seealso{ -Other {configurations}: +Other configurations: \code{\link{BAMS_model}}, \code{\link{COMISSION_model}}, \code{\link{MEMS_model}}, @@ -38,5 +38,5 @@ Other {configurations}: \code{\link{MIMCS_model}}, \code{\link{model_configs}} } -\concept{{configurations}} +\concept{configurations} \keyword{datasets} diff --git a/man/MEMS_model.Rd b/man/MEMS_model.Rd index 205d63f..fe1abe9 100644 --- a/man/MEMS_model.Rd +++ b/man/MEMS_model.Rd @@ -5,7 +5,7 @@ \alias{MEMS_model} \title{The MEMC model configuration for MEMS} \format{ -an object created form \code{configure_model}, containing the following elements. +An object created from \code{configure_model}, containing the following elements. \describe{ \item{name}{MEMS} \item{table}{table of the dynamics used by this model configuration, see \link{dynamics} for more details.} @@ -30,7 +30,7 @@ solve_model(mod = MEMS_model, time = 1:10) \href{https://doi.org/10.5194/bg-16-1225-2019}{Robertson et al. 2019} } \seealso{ -Other {configurations}: +Other configurations: \code{\link{BAMS_model}}, \code{\link{COMISSION_model}}, \code{\link{CORPSE_model}}, @@ -38,5 +38,5 @@ Other {configurations}: \code{\link{MIMCS_model}}, \code{\link{model_configs}} } -\concept{{configurations}} +\concept{configurations} \keyword{datasets} diff --git a/man/MEND_model.Rd b/man/MEND_model.Rd index dc79472..8a10110 100644 --- a/man/MEND_model.Rd +++ b/man/MEND_model.Rd @@ -5,7 +5,7 @@ \alias{MEND_model} \title{The MEMC model configuration for MEND} \format{ -an object created form \code{configure_model}. +An object created from \code{configure_model}. \describe{ \item{name}{MEND} \item{table}{table of the dynamics used by this model configuration, see \link{dynamics} for more details.} @@ -31,7 +31,7 @@ solve_model(mod = MEND_model, time = 1:10) \href{https://doi.org/10.1890/12-0681.1}{Wang et al. 2013} } \seealso{ -Other {configurations}: +Other configurations: \code{\link{BAMS_model}}, \code{\link{COMISSION_model}}, \code{\link{CORPSE_model}}, @@ -39,5 +39,5 @@ Other {configurations}: \code{\link{MIMCS_model}}, \code{\link{model_configs}} } -\concept{{configurations}} +\concept{configurations} \keyword{datasets} diff --git a/man/MIMCS_model.Rd b/man/MIMCS_model.Rd index 0143745..010994d 100644 --- a/man/MIMCS_model.Rd +++ b/man/MIMCS_model.Rd @@ -5,7 +5,7 @@ \alias{MIMCS_model} \title{The MEMC model configuration for MIMCS} \format{ -an object created form \code{configure_model}, containing the following elements. +An object created from \code{configure_model}, containing the following elements. \describe{ \item{name}{MIMCS} \item{table}{table of the dynamics used by this model configuration, see \link{dynamics} for more details.} @@ -30,7 +30,7 @@ solve_model(mod = MIMCS_model, time = 1:10) \href{https://doi.org/10.1002/2015GB005188}{Wieder et al. 2015} } \seealso{ -Other {configurations}: +Other configurations: \code{\link{BAMS_model}}, \code{\link{COMISSION_model}}, \code{\link{CORPSE_model}}, @@ -38,5 +38,5 @@ Other {configurations}: \code{\link{MEND_model}}, \code{\link{model_configs}} } -\concept{{configurations}} +\concept{configurations} \keyword{datasets} diff --git a/man/model_configs.Rd b/man/model_configs.Rd index baf5b44..0c5a127 100644 --- a/man/model_configs.Rd +++ b/man/model_configs.Rd @@ -23,7 +23,7 @@ Data table of all the pre-defined MEMC model configurations print(model_configs) } \seealso{ -Other {configurations}: +Other configurations: \code{\link{BAMS_model}}, \code{\link{COMISSION_model}}, \code{\link{CORPSE_model}}, @@ -31,5 +31,5 @@ Other {configurations}: \code{\link{MEND_model}}, \code{\link{MIMCS_model}} } -\concept{{configurations}} +\concept{configurations} \keyword{datasets}