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requirements.txt
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requirements.txt
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alabaster==0.7.12
alembic==1.8.1
anndata==0.8.0
astropy==2.0.3
asttokens==2.0.8
atomicwrites==1.3.0
attrs==19.1.0
autopage==0.5.1
Babel==2.10.3
backcall==0.2.0
backports.functools-lru-cache==1.6.4
boltons==19.1.0
brotlipy==0.7.0
cached-property==1.5.2
certifi==2022.9.24
cffi==1.15.1
charset-normalizer==2.1.1
click==8.1.3
cliff==4.0.0
cmaes==0.9.0
cmd2==2.4.2
colorama==0.4.5
colorlog==6.7.0
commonmark==0.9.1
contextlib2==0.5.5
contourpy==1.0.5
cryptography==37.0.1
cycler==0.11.0
Cython==0.29.32
debugpy==1.6.3
decorator==5.1.1
docker-pycreds==0.4.0
docutils==0.19
entrypoints==0.4
executing==1.0.0
fastjsonschema==2.16.2
fonttools==4.37.3
gensim==4.2.0
gitdb==4.0.10
GitPython==3.1.30
graphviz==0.20.1
greenlet==2.0.1
h5py==3.7.0
idna==3.4
igraph==0.9.10
igviz==0.5.0
imagesize==1.4.1
importlib-metadata==4.13.0
importlib-resources==5.10.0
ipykernel==6.15.3
ipython==8.5.0
jedi==0.18.1
Jinja2==3.1.2
joblib==1.2.0
jsonpickle==2.2.0
jsonschema==4.16.0
jupyter_client==7.3.5
jupyter_core==4.11.1
kaleido==0.2.1
kiwisolver==1.4.4
leidenalg==0.8.10
llvmlite==0.39.1
Mako==1.2.4
MarkupSafe==2.1.1
matplotlib==3.6.0
matplotlib-inline==0.1.6
matplotlib-venn==0.11.7
more-itertools==7.0.0
munkres==1.1.4
natsort==8.2.0
nbformat==5.6.0
nest-asyncio==1.5.5
networkx==2.8.7
node2vec==0.4.6
numba==0.56.3
numpy==1.23.0
# optuna==3.0.3
packaging==21.3
pandas==1.5.0
parso==0.8.3
pathtools==0.1.2
patsy==0.5.2
pbr==5.11.0
pexpect==4.8.0
pickleshare==0.7.5
Pillow==9.2.0
pip==22.2.2
pkgutil_resolve_name==1.3.10
plotly==5.10.0
pluggy==0.12.0
prettytable==3.5.0
promise==2.3
prompt-toolkit==3.0.31
protobuf==4.21.12
psutil==5.9.2
ptyprocess==0.7.0
pure-eval==0.2.2
py==1.8.0
pycparser==2.21
Pygments==2.13.0
pynndescent==0.5.7
pyOpenSSL==22.0.0
pyparsing==3.0.9
pyperclip==1.8.2
pyrsistent==0.18.1
PySocks==1.7.1
pytest==4.6.2
python-dateutil==2.8.2
python-igraph==0.9.10
python-louvain==0.16
pytz==2022.2.1
pyvis==0.3.0
PyYAML==6.0
pyzmq==24.0.1
requests==2.28.1
retrying==1.3.3
rich==12.6.0
scanpy==1.9.1
scikit-learn==1.1.2
scipy==1.9.1
seaborn==0.11.2
sentry-sdk==1.12.1
session-info==1.0.0
setproctitle==1.3.2
setuptools==65.3.0
shortuuid==1.0.11
six==1.16.0
smart-open==6.2.0
smfishHmrf==1.3.3
smmap==5.0.0
snowballstemmer==2.2.0
Sphinx==5.1.1
sphinxcontrib-applehelp==1.0.2
sphinxcontrib-devhelp==1.0.2
sphinxcontrib-htmlhelp==2.0.0
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-qthelp==1.0.3
sphinxcontrib-serializinghtml==1.1.5
SQLAlchemy==1.4.44
stack-data==0.5.0
statsmodels==0.13.2
stdlib-list==0.7.0
stevedore==4.1.1
tenacity==8.1.0
texttable==1.6.4
threadpoolctl==3.1.0
# torch==1.12.1+cu116
# torch-cluster==1.6.0
# torch-geometric==2.1.0.post1
# torch-scatter==2.0.9
# torch-sparse==0.6.15
# torch-spline-conv==1.2.1
# torchaudio==0.12.1
# torchvision==0.13.1
tornado==6.2
tqdm==4.64.1
traitlets==5.4.0
typing_extensions==4.3.0
umap-learn==0.5.3
unicodedata2==14.0.0
urllib3==1.26.11
wandb==0.13.7
wcwidth==0.1.7
wheel==0.37.1
zipp==3.10.0