GitHub - ModelDBRepository/223269: Glutamate-evoked Ca2+ oscillations in single astrocytes (De Pitta et al. 2009) (Manninen et al 2017)

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Glutamate-evoked Ca2+ oscillations in single astrocytes (De Pitta et al. 2009) (Manninen et al 2017)

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This is the readme for the model for the papers:

1 . De Pitta M, Goldberg M, Volman V, Berry H, Ben-Jacob E (2009)
Glutamate regulation of calcium and IP3 oscillating and pulsating
dynamics in astrocytes. J Biol Phys 35:383-411
<a href="http://dx.doi.org/10.1007/s10867-009-9155-y">doi: 10.1007/s10867-009-9155-y</a>

see also De Pitta M, Goldberg M, Volman V, Berry H, Ben-Jacob E (2010)
Erratum to: Glutamate regulation of calcium and IP3 oscillating and
pulsating dynamics in astrocytes J Biol Phys 36:221
<a href="http://dx.doi.org/10.1007/s10867-009-9182-8
">doi: 10.1007/s10867-009-9182-8</a>

2. Manninen T, Havela R, Linne ML (2017) Reproducibility and
comparability of computational models for astrocyte calcium
excitability Front. Neuroinform.

This jupyter notebook was contributed by Dr T Manninen.

To run, start jupyter notebook on your system and load the ipython
notebook.

The model code produces results of Figure 1 and Figures 3-5 in Manninen,
Havela, Linne (2017).

It also reproduces (the 2nd plot, Calcium concentration) 

<img src="./screenshot.png" alt="screenshot" width="550">

Figure 12a (AM) in the De Pitta et al. 2009 paper.
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