diff --git a/articles/basic_use.html b/articles/basic_use.html index 45c9698..205290d 100644 --- a/articles/basic_use.html +++ b/articles/basic_use.html @@ -98,7 +98,7 @@

Using ‘shapviz’

- Source: vignettes/basic_use.Rmd + Source: vignettes/basic_use.Rmd @@ -282,10 +282,14 @@

shapr library(shapr) fit <- lm(Sepal.Length ~ ., data = iris) -x <- shapr(iris, fit) explanation <- shapr::explain( - iris, approach = "ctree", explainer = x, prediction_zero = mean(iris$Sepal.Length) + model = fit, + x_train = iris[-1], + x_explain = iris[-1], + approach = "ctree", + phi0 = mean(iris$Sepal.Length) ) + shp <- shapviz(explanation) sv_importance(shp) sv_dependence(shp, "Sepal.Width") @@ -312,7 +316,7 @@

treeshap
 library(shapviz)
 library(treeshap)
-library(ranger)
+library(ranger)
 
 fit <- ranger(
   y = iris$Sepal.Width, x = iris[-1], max.depth = 6, num.trees = 100
@@ -333,7 +337,7 @@ 
DALEX
 
 library(shapviz)
 library(DALEX)
-library(ranger)
+library(ranger)
 
 fit <- ranger(Sepal.Length ~ ., data = iris, max.depth = 6, num.trees = 100)
 explainer <- DALEX::explain(fit, data = iris[-1], y = iris[, 1], label = "RF")
diff --git a/articles/geographic.html b/articles/geographic.html
index a1995e8..42061cc 100644
--- a/articles/geographic.html
+++ b/articles/geographic.html
@@ -98,7 +98,7 @@
       
Geographic Components

             
       
-      Source: vignettes/geographic.Rmd
+      Source: vignettes/geographic.Rmd
       
 
     

diff --git a/articles/multiple_output.html b/articles/multiple_output.html
index 9e835c4..27042d4 100644
--- a/articles/multiple_output.html
+++ b/articles/multiple_output.html
@@ -98,7 +98,7 @@
       
Multiple ‘shapviz’ objects

             
       
-      Source: vignettes/multiple_output.Rmd
+      Source: vignettes/multiple_output.Rmd
       
 
     
@@ -206,7 +206,7 @@ 
Or for a random forest with {ker
 library(kernelshap)
 library(ggplot2)
 library(patchwork)
-library(ranger)
+library(ranger)
 
 # Model
 fit <- ranger(Species ~ ., data = iris, num.trees = 100, probability = TRUE, seed = 1)
diff --git a/articles/tidymodels.html b/articles/tidymodels.html
index 556aff1..738d455 100644
--- a/articles/tidymodels.html
+++ b/articles/tidymodels.html
@@ -98,7 +98,7 @@
       
Tidymodels

             
       
-      Source: vignettes/tidymodels.Rmd
+      Source: vignettes/tidymodels.Rmd
       
 
     
diff --git a/authors.html b/authors.html
index 72e5c18..d3aa090 100644
--- a/authors.html
+++ b/authors.html
@@ -87,7 +87,7 @@ 
Authors and Citation

     

     

       
Citation

-      Source: DESCRIPTION
+      Source: DESCRIPTION
     

     

 
diff --git a/news/index.html b/news/index.html
index 9cac543..479a9cf 100644
--- a/news/index.html
+++ b/news/index.html
@@ -71,7 +71,7 @@
   

     

       
Changelog 

-      Source: NEWS.md
+      Source: NEWS.md
     

 
     

diff --git a/pkgdown.yml b/pkgdown.yml
index 32634a0..6465159 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -6,4 +6,4 @@ articles:
   geographic: geographic.html
   multiple_output: multiple_output.html
   tidymodels: tidymodels.html
-last_built: 2024-10-11T11:20Z
+last_built: 2024-11-16T07:29Z
diff --git a/reference/c.shapviz.html b/reference/c.shapviz.html
index ab67193..27928df 100644
--- a/reference/c.shapviz.html
+++ b/reference/c.shapviz.html
@@ -72,7 +72,7 @@
   

     

     
Concatenates "shapviz" Objects

-    Source: R/methods.R
+    Source: R/methods.R
     
     

 
diff --git a/reference/collapse_shap.html b/reference/collapse_shap.html
index 857c8df..14db626 100644
--- a/reference/collapse_shap.html
+++ b/reference/collapse_shap.html
@@ -74,7 +74,7 @@
   

     

     
Collapse SHAP values

-    Source: R/collapse_shap.R
+    Source: R/collapse_shap.R
     
     

 
diff --git a/reference/dim.shapviz.html b/reference/dim.shapviz.html
index 28694eb..601a1b6 100644
--- a/reference/dim.shapviz.html
+++ b/reference/dim.shapviz.html
@@ -71,7 +71,7 @@
   

     

     
Dimensions of "shapviz" Object

-    Source: R/methods.R
+    Source: R/methods.R
     
     

 
diff --git a/reference/dimnames-set-.shapviz.html b/reference/dimnames-set-.shapviz.html
index 20303e0..36ede34 100644
--- a/reference/dimnames-set-.shapviz.html
+++ b/reference/dimnames-set-.shapviz.html
@@ -71,7 +71,7 @@
   

     

     
Dimnames (Replacement Method) of "shapviz" Object

-    Source: R/methods.R
+    Source: R/methods.R
     
     

 
diff --git a/reference/dimnames.shapviz.html b/reference/dimnames.shapviz.html
index 5276fbd..70f1415 100644
--- a/reference/dimnames.shapviz.html
+++ b/reference/dimnames.shapviz.html
@@ -72,7 +72,7 @@
   

     

     
Dimnames of "shapviz" Object

-    Source: R/methods.R
+    Source: R/methods.R
     
     

 
diff --git a/reference/extractors.html b/reference/extractors.html
index 5e081b6..eece587 100644
--- a/reference/extractors.html
+++ b/reference/extractors.html
@@ -72,7 +72,7 @@
   

     

     
Extractor Functions

-    Source: R/extractors.R
+    Source: R/extractors.R
     
     

 
diff --git a/reference/format_max.html b/reference/format_max.html
index a703e0e..e978e04 100644
--- a/reference/format_max.html
+++ b/reference/format_max.html
@@ -73,7 +73,7 @@
   

     

     
Number Formatter

-    Source: R/sv_importance.R
+    Source: R/sv_importance.R
     
     

 
diff --git a/reference/is.mshapviz.html b/reference/is.mshapviz.html
index a1f34f9..a12a7ef 100644
--- a/reference/is.mshapviz.html
+++ b/reference/is.mshapviz.html
@@ -71,7 +71,7 @@
   

     

     
Check for mshapviz

-    Source: R/methods.R
+    Source: R/methods.R
     
     

 
diff --git a/reference/is.shapviz.html b/reference/is.shapviz.html
index 17731c0..848788f 100644
--- a/reference/is.shapviz.html
+++ b/reference/is.shapviz.html
@@ -71,7 +71,7 @@
   

     

     
Check for shapviz

-    Source: R/methods.R
+    Source: R/methods.R
     
     

 
diff --git a/reference/miami.html b/reference/miami.html
index 508f775..44f8fd9 100644
--- a/reference/miami.html
+++ b/reference/miami.html
@@ -76,7 +76,7 @@
   

     

     
Miami-Dade County House Prices

-    Source: R/data.R
+    Source: R/data.R
     
     

 
diff --git a/reference/mshapviz.html b/reference/mshapviz.html
index b107864..d0cac18 100644
--- a/reference/mshapviz.html
+++ b/reference/mshapviz.html
@@ -72,7 +72,7 @@
   

     

     
Combines compatible "shapviz" Objects

-    Source: R/shapviz.R
+    Source: R/shapviz.R
     
     

 
diff --git a/reference/plus-.shapviz.html b/reference/plus-.shapviz.html
index a183ba2..862b1d4 100644
--- a/reference/plus-.shapviz.html
+++ b/reference/plus-.shapviz.html
@@ -71,7 +71,7 @@
   

     

     
Rowbinds two "shapviz" Objects

-    Source: R/methods.R
+    Source: R/methods.R
     
     

 
diff --git a/reference/potential_interactions.html b/reference/potential_interactions.html
index 36feee7..7fc2c3d 100644
--- a/reference/potential_interactions.html
+++ b/reference/potential_interactions.html
@@ -72,7 +72,7 @@
   

     

     
Interaction Strength

-    Source: R/potential_interactions.R
+    Source: R/potential_interactions.R
     
     

 
diff --git a/reference/print.mshapviz.html b/reference/print.mshapviz.html
index 8ea3477..95e37d3 100644
--- a/reference/print.mshapviz.html
+++ b/reference/print.mshapviz.html
@@ -71,7 +71,7 @@
   

     

     
Prints "mshapviz" Object

-    Source: R/methods.R
+    Source: R/methods.R
     
     

 
diff --git a/reference/print.shapviz.html b/reference/print.shapviz.html
index e1b0c32..800a8d0 100644
--- a/reference/print.shapviz.html
+++ b/reference/print.shapviz.html
@@ -71,7 +71,7 @@
   

     

     
Prints "shapviz" Object

-    Source: R/methods.R
+    Source: R/methods.R
     
     

 
diff --git a/reference/rbind.shapviz.html b/reference/rbind.shapviz.html
index 7c4a6d1..8efd8b9 100644
--- a/reference/rbind.shapviz.html
+++ b/reference/rbind.shapviz.html
@@ -71,7 +71,7 @@
   

     

     
Rowbinds Multiple "shapviz" or "mshapviz" Objects

-    Source: R/methods.R
+    Source: R/methods.R
     
     

 
diff --git a/reference/shapviz-package.html b/reference/shapviz-package.html
index 38f4e6d..e8fe5ce 100644
--- a/reference/shapviz-package.html
+++ b/reference/shapviz-package.html
@@ -72,7 +72,7 @@
   

     

     
shapviz: SHAP Visualizations

-    Source: R/shapviz-package.R
+    Source: R/shapviz-package.R
     
     

 
diff --git a/reference/shapviz.html b/reference/shapviz.html
index c462208..18513ff 100644
--- a/reference/shapviz.html
+++ b/reference/shapviz.html
@@ -88,7 +88,7 @@
   

     

     
Initialize "shapviz" Object

-    Source: R/shapviz.R
+    Source: R/shapviz.R
     
     

 
@@ -146,7 +146,12 @@ 
Initialize "shapviz" Object

 shapviz(object, ...)
 
 # S3 method for class 'shapr'
-shapviz(object, X = object[["x_test"]], collapse = NULL, ...)
+shapviz(
+  object,
+  X = as.data.frame(object$internal$data$x_explain),
+  collapse = NULL,
+  ...
+)
 
 # S3 method for class 'kernelshap'
 shapviz(object, X = object[["X"]], which_class = NULL, collapse = NULL, ...)
diff --git a/reference/split.shapviz.html b/reference/split.shapviz.html
index 67ba308..7104dc5 100644
--- a/reference/split.shapviz.html
+++ b/reference/split.shapviz.html
@@ -71,7 +71,7 @@
   

     

     
Splits "shapviz" Object

-    Source: R/methods.R
+    Source: R/methods.R
     
     

 
diff --git a/reference/sub-.shapviz.html b/reference/sub-.shapviz.html
index d3916a9..47c7bde 100644
--- a/reference/sub-.shapviz.html
+++ b/reference/sub-.shapviz.html
@@ -72,7 +72,7 @@
   

     

     
Subsets "shapviz" Object

-    Source: R/methods.R
+    Source: R/methods.R
     
     

 
diff --git a/reference/summary.shapviz.html b/reference/summary.shapviz.html
index 0cdb2e4..2d62643 100644
--- a/reference/summary.shapviz.html
+++ b/reference/summary.shapviz.html
@@ -71,7 +71,7 @@
   

     

     
Summarizes "shapviz" Object

-    Source: R/methods.R
+    Source: R/methods.R
     
     

 
diff --git a/reference/sv_dependence.html b/reference/sv_dependence.html
index 26fa50c..603dd1c 100644
--- a/reference/sv_dependence.html
+++ b/reference/sv_dependence.html
@@ -75,7 +75,7 @@
   

     

     
SHAP Dependence Plot

-    Source: R/sv_dependence.R
+    Source: R/sv_dependence.R
     
     

 
diff --git a/reference/sv_dependence2D.html b/reference/sv_dependence2D.html
index 966342f..7204ba1 100644
--- a/reference/sv_dependence2D.html
+++ b/reference/sv_dependence2D.html
@@ -77,7 +77,7 @@
   

     

     
2D SHAP Dependence Plot

-    Source: R/sv_dependence2D.R
+    Source: R/sv_dependence2D.R
     
     

 
diff --git a/reference/sv_force.html b/reference/sv_force.html
index 567f288..fe7458b 100644
--- a/reference/sv_force.html
+++ b/reference/sv_force.html
@@ -72,7 +72,7 @@
   

     

     
SHAP Force Plot

-    Source: R/sv_force.R
+    Source: R/sv_force.R
     
     

 
diff --git a/reference/sv_importance.html b/reference/sv_importance.html
index eeea7f6..af27b91 100644
--- a/reference/sv_importance.html
+++ b/reference/sv_importance.html
@@ -73,7 +73,7 @@
   

     

     
SHAP Importance Plots

-    Source: R/sv_importance.R
+    Source: R/sv_importance.R
     
     

 
diff --git a/reference/sv_interaction.html b/reference/sv_interaction.html
index be083bb..09b198c 100644
--- a/reference/sv_interaction.html
+++ b/reference/sv_interaction.html
@@ -75,7 +75,7 @@
   

     

     
SHAP Interaction Plot

-    Source: R/sv_interaction.R
+    Source: R/sv_interaction.R
     
     

 
diff --git a/reference/sv_waterfall.html b/reference/sv_waterfall.html
index ade0bc1..62eb890 100644
--- a/reference/sv_waterfall.html
+++ b/reference/sv_waterfall.html
@@ -72,7 +72,7 @@
   

     

     
SHAP Waterfall Plot

-    Source: R/sv_waterfall.R
+    Source: R/sv_waterfall.R