From cb06131d4ba1ec007371539edd0fa35713c1f6f0 Mon Sep 17 00:00:00 2001 From: Phil Ewels Date: Fri, 19 Oct 2018 17:41:37 -0700 Subject: [PATCH] Fastp: example data from ewels/MultiQC#845 --- .../fastp/issue_845/ERR1702979_fastp.json | 412 ++++++++++++++++++ 1 file changed, 412 insertions(+) create mode 100644 data/modules/fastp/issue_845/ERR1702979_fastp.json diff --git a/data/modules/fastp/issue_845/ERR1702979_fastp.json b/data/modules/fastp/issue_845/ERR1702979_fastp.json new file mode 100644 index 00000000..18488017 --- /dev/null +++ b/data/modules/fastp/issue_845/ERR1702979_fastp.json @@ -0,0 +1,412 @@ +{ + "summary": { + "before_filtering": { + "total_reads":282, + "total_bases":28200, + "q20_bases":22550, + "q30_bases":18029, + "q20_rate":0.799645, + "q30_rate":0.639326, + "read1_mean_length":100, + "read2_mean_length":100, + "gc_content":0.475071 + }, + "after_filtering": { + "total_reads":228, + "total_bases":20789, + "q20_bases":18922, + "q30_bases":15714, + 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"GCGGC":15, "GCGGG":12, + "GGAAA":19, "GGAAT":13, "GGAAC":10, "GGAAG":17, "GGATA":13, "GGATT":8, "GGATC":2, "GGATG":23, "GGACA":13, "GGACT":4, "GGACC":10, "GGACG":9, "GGAGA":8, "GGAGT":16, "GGAGC":10, "GGAGG":19, + "GGTAA":10, "GGTAT":13, "GGTAC":6, "GGTAG":7, "GGTTA":10, "GGTTT":9, "GGTTC":11, "GGTTG":8, "GGTCA":8, "GGTCT":2, "GGTCC":14, "GGTCG":1, "GGTGA":26, "GGTGT":8, "GGTGC":9, "GGTGG":8, + "GGCAA":7, "GGCAT":4, "GGCAC":6, "GGCAG":10, "GGCTA":9, "GGCTT":8, "GGCTC":3, "GGCTG":13, "GGCCA":2, "GGCCT":8, "GGCCC":6, "GGCCG":4, "GGCGA":18, "GGCGT":5, "GGCGC":12, "GGCGG":19, + "GGGAA":17, "GGGAT":9, "GGGAC":13, "GGGAG":15, "GGGTA":8, "GGGTT":13, "GGGTC":0, "GGGTG":14, "GGGCA":6, "GGGCT":13, "GGGCC":4, "GGGCG":10, "GGGGA":26, "GGGGT":10, "GGGGC":8, "GGGGG":21 + }, + "overrepresented_sequences": { + } + }, + "command": "fastp -i /home/snape/data/fastq/ERR1702979_1.fastq -I /home/snape/data/fastq/ERR1702979_2.fastq -o /home/snape/data/output/trimmed_files/ERR1702979_R1.fq -O /home/snape/data/output/trimmed_files/ERR1702979_R2.fq -l 20 -5 3 -3 3 -h /home/snape/data/output/QC_fastq/ERR1702979_fastp.html -j /home/snape/data/output/QC_fastq/ERR1702979_fastp.json -w 16 -R fastp for sample ERR1702979 " +} \ No newline at end of file