From 69a4ebb26cf79b1ea2e8ff816f5018c2d4d54588 Mon Sep 17 00:00:00 2001 From: Jacques Dainat Date: Tue, 3 Sep 2024 16:09:49 +0200 Subject: [PATCH] remove inflate option (#481) --- bin/agat_convert_genscan2gff.pl | 11 ----------- docs/tools/agat_convert_genscan2gff.md | 11 ----------- 2 files changed, 22 deletions(-) diff --git a/bin/agat_convert_genscan2gff.pl b/bin/agat_convert_genscan2gff.pl index 6bcfdfa1..4796eb22 100755 --- a/bin/agat_convert_genscan2gff.pl +++ b/bin/agat_convert_genscan2gff.pl @@ -286,17 +286,6 @@ =head1 OPTIONS The primary_tag corresponf to the data type and is stored in 3rd field of a gff file. Example: gene,mRNA,CDS,etc. [default: gene] -=item B<--inflate_off> - -By default we inflate the block fields (blockCount, blockSizes, blockStarts) to create subfeatures -of the main feature (primary_tag). Type of subfeature created based on the -inflate_type parameter. If you don't want this inflating behaviour you can deactivate it -by using the option --inflate_off. - -=item B<--inflate_type> - -Feature type (3rd column in gff) created when inflate parameter activated [default: exon]. - =item B<--verbose> add verbosity diff --git a/docs/tools/agat_convert_genscan2gff.md b/docs/tools/agat_convert_genscan2gff.md index c6df47fd..9a1d9e0a 100644 --- a/docs/tools/agat_convert_genscan2gff.md +++ b/docs/tools/agat_convert_genscan2gff.md @@ -37,17 +37,6 @@ agat_convert_genscan2gff.pl -h The primary\_tag corresponf to the data type and is stored in 3rd field of a gff file. Example: gene,mRNA,CDS,etc. \[default: gene\] -- **--inflate\_off** - - By default we inflate the block fields (blockCount, blockSizes, blockStarts) to create subfeatures - of the main feature (primary\_tag). Type of subfeature created based on the - inflate\_type parameter. If you don't want this inflating behaviour you can deactivate it - by using the option --inflate\_off. - -- **--inflate\_type** - - Feature type (3rd column in gff) created when inflate parameter activated \[default: exon\]. - - **--verbose** add verbosity