v1.2.0

• Add ccad2 profile
• Add case control feature

v1.1.1

• add sex_chr_included parameter to config.yml. If false sex concordance check step is skipped.
• F, M and U are plotted by plot_chrx_inbreeding.py

Release v1.0.0

First release of the new GwasQcPipeline

Release v1.0.0-rc.7

chore: remove legacy workflow code

I had kept a folder of legacy code for easy reference. I am removing it now to
clean things up. All of this code is still available on the legacy branch.

Release v1.0.0-rc.6

fix(workflow): force Subject_ID dtype to be string when building popu…

Release v1.0.0-rc.5

tweak_legacy_compare (#205)

Tweaks the output of the legacy compare script to give more information.

Release v1.0.0-rc.4

Fixing some count differences

Fixes some count discrepencies. I ran the workflow on a few edge case projects to find some small edge case descrepencies. I fixed those there.

Release v1.0.0-rc.3

Merge pull request #188 from NCI-CGR:jfear/issue187

Fix stale ldpath bug when running illuminaio

Release v1.0.0-rc.2

Merge pull request #184 from NCI-CGR:jfear/issue183

fix(cli): make pre-flight progress bar work

Release v1.0.0-rc.1

Updates dependencies (issue3) (#180)

Closes #3