2023-02-09 15:16:42.367 [main] INFO ProtegeApplication ------------------------------------ Protege ----------------------------------- 2023-02-09 15:16:42.369 [main] INFO ProtegeApplication Protege Desktop 2023-02-09 15:16:42.370 [main] INFO ProtegeApplication 2023-02-09 15:16:42.370 [main] INFO ProtegeApplication 2023-02-09 15:16:42.370 [main] INFO ProtegeApplication ----------------------------------- Platform ----------------------------------- 2023-02-09 15:16:42.370 [main] INFO ProtegeApplication Java: JVM 1.8.0_212-b04 Memory: 11185M 2023-02-09 15:16:42.371 [main] INFO ProtegeApplication Language: en, Country: US 2023-02-09 15:16:42.371 [main] INFO ProtegeApplication 2023-02-09 15:16:42.371 [main] INFO ProtegeApplication ------------------------------------ Plugins ----------------------------------- 2023-02-09 15:16:42.371 [main] INFO ProtegeApplication 2023-02-09 15:16:42.374 [main] INFO FilePrefs Instantiating node PROTEGE_PREFERENCES 2023-02-09 15:16:42.375 [main] INFO FilePrefs Instantiating node application_preferences 2023-02-09 15:16:42.376 [main] INFO FilePrefs Instantiating node LOOK_AND_FEEL_KEY 2023-02-09 15:16:42.416 [main] INFO FilePrefs Instantiating node org.protege.editor.owl.ui.renderer.OWLRendererPreferences 2023-02-09 15:16:42.575 [main] INFO ProtegeApplication Creating and setting up empty (default) editor kit 2023-02-09 15:16:42.587 [main] INFO OWLEditorKit OWL API Version: 5.1.6-SNAPSHOT.2023-01-13T21:26:32Z 2023-02-09 15:16:42.622 [main] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLOntologyManager 2023-02-09 15:16:42.670 [main] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLDataFactory 2023-02-09 15:16:42.886 [main] INFO Injector Injecting object uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@54c62d71 2023-02-09 15:16:42.900 [main] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLStorerFactory 2023-02-09 15:16:42.921 [main] INFO Injector Injecting values [[org.semanticweb.owlapi.rio.RioJsonLDStorerFactory@395b56bb, org.semanticweb.owlapi.rdf.turtle.renderer.TurtleStorerFactory@14d14731, org.semanticweb.owlapi.rio.RioNTriplesStorerFactory@2a79d4b1, org.semanticweb.owlapi.rio.RioTrigStorerFactory@1af687fe, org.semanticweb.owlapi.owlxml.renderer.OWLXMLStorerFactory@435fb7b5, org.semanticweb.owlapi.rio.RioBinaryRdfStorerFactory@6955cb39, org.semanticweb.owlapi.manchestersyntax.renderer.ManchesterSyntaxStorerFactory@7bb6ab3a, org.semanticweb.owlapi.functional.renderer.FunctionalSyntaxStorerFactory@1c3146bc, org.semanticweb.owlapi.rdf.rdfxml.renderer.RDFXMLStorerFactory@bf1ec20, org.semanticweb.owlapi.rio.RioJsonStorerFactory@68fa0ba8, org.semanticweb.owlapi.rio.RioN3StorerFactory@7ac2e39b, org.semanticweb.owlapi.dlsyntax.renderer.DLSyntaxHTMLStorerFactory@3e14c16d, org.semanticweb.owlapi.oboformat.OBOFormatStorerFactory@43aaf813, org.semanticweb.owlapi.krss2.renderer.KRSS2OWLSyntaxStorerFactory@73dce0e6, org.semanticweb.owlapi.rio.RioRDFXMLStorerFactory@2371aaca, org.semanticweb.owlapi.dlsyntax.renderer.DLSyntaxStorerFactory@5d1659ea, org.semanticweb.owlapi.latex.renderer.LatexStorerFactory@4b7e96a, org.semanticweb.owlapi.rio.RioNQuadsStorerFactory@18c5069b, org.semanticweb.owlapi.rio.RioTrixStorerFactory@2374d36a, org.semanticweb.owlapi.rio.RioTurtleStorerFactory@1a45193b]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyStorers(java.util.Set). 2023-02-09 15:16:42.922 [main] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLOntologyFactory 2023-02-09 15:16:42.924 [main] INFO Injector Injecting values [[uk.ac.manchester.cs.owl.owlapi.OWLOntologyFactoryImpl@2a7686a7]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyFactories(java.util.Set). 2023-02-09 15:16:42.925 [main] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLOntologyIRIMapper 2023-02-09 15:16:42.925 [main] WARN Injector No files found for META-INF/services/org.semanticweb.owlapi.model.OWLOntologyIRIMapper 2023-02-09 15:16:42.925 [main] INFO Injector Injecting values [[]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setIRIMappers(java.util.Set). 2023-02-09 15:16:42.925 [main] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.io.OWLParserFactory 2023-02-09 15:16:42.931 [main] INFO Injector Injecting values [[org.semanticweb.owlapi.rio.RioNTriplesParserFactory@7c541c15, org.semanticweb.owlapi.rio.RioNQuadsParserFactory@2ccca26f, org.semanticweb.owlapi.rdf.turtle.parser.TurtleOntologyParserFactory@77a98a6a, org.semanticweb.owlapi.rio.RioN3ParserFactory@2a2c13a8, org.semanticweb.owlapi.rio.RioRDFaParserFactory@3b2c0e88, org.semanticweb.owlapi.rio.RioBinaryRdfParserFactory@5b1f29fa, org.semanticweb.owlapi.rio.RioTrigParserFactory@549949be, org.semanticweb.owlapi.krss2.parser.KRSS2OWLParserFactory@5d2a4eed, org.semanticweb.owlapi.functional.parser.OWLFunctionalSyntaxOWLParserFactory@7e22550a, org.semanticweb.owlapi.rdf.rdfxml.parser.RDFXMLParserFactory@1021f6c9, org.semanticweb.owlapi.rio.RioTurtleParserFactory@a202ccb, org.semanticweb.owlapi.rio.RioJsonLDParserFactory@774698ab, org.semanticweb.owlapi.rio.RioRDFXMLParserFactory@476b0ae6, org.semanticweb.owlapi.dlsyntax.parser.DLSyntaxOWLParserFactory@5e81e5ac, org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntaxOntologyParserFactory@18025ced, org.semanticweb.owlapi.oboformat.OBOFormatOWLAPIParserFactory@3e7634b9, org.semanticweb.owlapi.rio.RioTrixParserFactory@20a14b55, org.semanticweb.owlapi.rio.RioJsonParserFactory@72ea6193, org.semanticweb.owlapi.owlxml.parser.OWLXMLParserFactory@6941827a]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyParsers(java.util.Set). 2023-02-09 15:16:42.945 [main] INFO FilePrefs Instantiating node INFERENCE_PREFS_SET 2023-02-09 15:16:42.946 [main] INFO FilePrefs Instantiating node org.protege.editor.owl.model.inference.ReasonerPreferences 2023-02-09 15:16:42.952 [main] INFO FilePrefs Instantiating node gov.nih.nci.curator 2023-02-09 15:16:43.221 [main] INFO FilePrefs Instantiating node ANNOTATION_PREFS_SET 2023-02-09 15:16:43.222 [main] INFO FilePrefs Instantiating node HIDDEN_ANNOATIONS_URIS 2023-02-09 15:16:43.231 [main] INFO FilePrefs Instantiating node search.manager.preferences 2023-02-09 15:16:43.260 [main] INFO FilePrefs Instantiating node tabs 2023-02-09 15:16:43.260 [main] INFO FilePrefs Instantiating node visible_tabs 2023-02-09 15:16:43.262 [main] INFO FilePrefs Instantiating node custom_tabs 2023-02-09 15:16:43.269 [main] INFO FilePrefs Instantiating node ViewLayoutPreferences 2023-02-09 15:16:43.297 [main] INFO NCIEditTab NCI Edit Tab initialized 2023-02-09 15:16:43.297 [main] INFO NCIEditTab NCI Edit Tab initialized 2023-02-09 15:16:43.322 [main] INFO FilePrefs Instantiating node OntologyPreferences 2023-02-09 15:16:43.381 [main] WARN OWLModelManagerImpl Cannot generate ontology catalog for ontology at http://www.semanticweb.org/singhik/ontologies/2023/1/untitled-ontology-10 2023-02-09 15:16:43.491 [main] INFO FilePrefs Instantiating node org.protege.editor.core.ui.workspace.WorkspaceFrame 2023-02-09 15:16:43.835 [main] INFO FilePrefs Instantiating node LuceneTabPreferences 2023-02-09 15:16:43.907 [main] INFO ProtegeApplication ------------------------------- Auto-update Check ------------------------------ 2023-02-09 15:16:43.908 [main] INFO FilePrefs Instantiating node org.protege.editor.core.update.PluginManager 2023-02-09 15:16:43.909 [main] INFO ProtegeApplication Auto-update last performed: Wed Feb 01 14:39:43 EST 2023 2023-02-09 15:16:43.909 [main] INFO ProtegeApplication Auto-update has not been performed today. Running it. 2023-02-09 15:16:43.910 [main] INFO ProtegeApplication 2023-02-09 15:16:43.913 [Auto-Update] INFO PluginRegistryImpl ------------------------------ Running Auto-update ----------------------------- 2023-02-09 15:16:43.913 [Auto-Update] INFO PluginRegistryImpl 2023-02-09 15:16:43.928 [Auto-Update] INFO PluginRegistryImpl --- Searching for plugins --- 2023-02-09 15:16:43.950 [Auto-Update] INFO PluginRegistryImpl Checking https://raw.githubusercontent.com/ncievs/autoupdate/master/plugins.repository 2023-02-09 15:16:43.950 [Auto-Update] INFO PluginRegistryImpl Processing https://raw.githubusercontent.com/ncievs/autoupdate/master/plugins.repository as a plugin registry 2023-02-09 15:16:44.328 [Auto-Update] INFO PluginRegistryImpl Checking https://raw.githubusercontent.com/ncievs/nci-edit-tab/master/src/main/resources/prod/update.properties 2023-02-09 15:16:44.476 [Auto-Update] INFO PluginRegistryImpl Checking https://raw.githubusercontent.com/ncievs/lucene-search-tab/master/src/main/resources/prod/update.properties 2023-02-09 15:16:44.575 [Auto-Update] INFO PluginRegistryImpl Checking https://raw.githubusercontent.com/ncievs/metaproject-admin/master/src/main/resources/prod/update.properties 2023-02-09 15:16:44.597 [Auto-Update] INFO PluginRegistryImpl Checking https://raw.githubusercontent.com/ncievs/revision-history/master/src/main/resources/prod/update.properties 2023-02-09 15:16:44.710 [Auto-Update] INFO PluginRegistryImpl Checking https://raw.githubusercontent.com/ncievs/sparql-query-plugin/master/src/main/resources/prod/update.properties 2023-02-09 15:16:44.815 [Auto-Update] INFO PluginRegistryImpl Checking https://raw.githubusercontent.com/ncievs/evs-history/master/src/main/resources/prod/update.properties 2023-02-09 15:16:44.913 [Auto-Update] INFO PluginRegistryImpl Checking https://raw.githubusercontent.com/ncievs/nci-curator/master/src/main/resources/prod/update.properties 2023-02-09 15:16:45.050 [Auto-Update] INFO PluginRegistryImpl 2023-02-09 15:16:46.350 [AWT-EventQueue-0] INFO FilePrefs Instantiating node org.protege.editor.owl.client 2023-02-09 15:16:46.351 [AWT-EventQueue-0] INFO FilePrefs Instantiating node SERVER_LOCATIONS 2023-02-09 15:16:51.353 [AWT-EventQueue-0] INFO FilePrefs Instantiating node PREFERRED_TAB_NAMES 2023-02-09 15:17:12.419 [SwingWorker-pool-2-thread-1] INFO SessionRecorder Changes equal ignored changes? false 2023-02-09 15:17:12.430 [SwingWorker-pool-2-thread-1] INFO SessionRecorder Changes equal ignored changes? false 2023-02-09 15:17:12.430 [SwingWorker-pool-2-thread-1] INFO SessionRecorder Changes equal ignored changes? false 2023-02-09 15:17:12.430 [SwingWorker-pool-2-thread-1] INFO SessionRecorder Changes equal ignored changes? false 2023-02-09 15:17:12.430 [SwingWorker-pool-2-thread-1] INFO SessionRecorder Changes equal ignored changes? false 2023-02-09 15:18:20.959 [SwingWorker-pool-2-thread-1] INFO SessionRecorder Changes equal ignored changes? false 2023-02-09 15:18:32.913 [SwingWorker-pool-2-thread-1] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLOntologyManager 2023-02-09 15:18:32.914 [SwingWorker-pool-2-thread-1] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLDataFactory 2023-02-09 15:18:32.917 [SwingWorker-pool-2-thread-1] INFO Injector Injecting object uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@4df30b51 2023-02-09 15:18:32.917 [SwingWorker-pool-2-thread-1] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLStorerFactory 2023-02-09 15:18:32.918 [SwingWorker-pool-2-thread-1] INFO Injector Injecting values [[org.semanticweb.owlapi.rio.RioBinaryRdfStorerFactory@1a008f81, org.semanticweb.owlapi.oboformat.OBOFormatStorerFactory@6d533972, org.semanticweb.owlapi.rdf.turtle.renderer.TurtleStorerFactory@61677065, org.semanticweb.owlapi.rio.RioNTriplesStorerFactory@30f5ef11, org.semanticweb.owlapi.krss2.renderer.KRSS2OWLSyntaxStorerFactory@3f635826, org.semanticweb.owlapi.functional.renderer.FunctionalSyntaxStorerFactory@3ecdb8, org.semanticweb.owlapi.rio.RioN3StorerFactory@4f165f6, org.semanticweb.owlapi.rdf.rdfxml.renderer.RDFXMLStorerFactory@367f41d7, org.semanticweb.owlapi.rio.RioTrixStorerFactory@6383164a, org.semanticweb.owlapi.owlxml.renderer.OWLXMLStorerFactory@7b74a5da, org.semanticweb.owlapi.rio.RioJsonLDStorerFactory@4f7ca613, org.semanticweb.owlapi.rio.RioTrigStorerFactory@65650476, org.semanticweb.owlapi.rio.RioJsonStorerFactory@1a98006c, org.semanticweb.owlapi.rio.RioRDFXMLStorerFactory@6ab40203, org.semanticweb.owlapi.dlsyntax.renderer.DLSyntaxHTMLStorerFactory@126a4bb1, org.semanticweb.owlapi.rio.RioNQuadsStorerFactory@1a938e6e, org.semanticweb.owlapi.rio.RioTurtleStorerFactory@7c11f04c, org.semanticweb.owlapi.manchestersyntax.renderer.ManchesterSyntaxStorerFactory@735ede63, org.semanticweb.owlapi.latex.renderer.LatexStorerFactory@174222fc, org.semanticweb.owlapi.dlsyntax.renderer.DLSyntaxStorerFactory@37ed93b2]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyStorers(java.util.Set). 2023-02-09 15:18:32.918 [SwingWorker-pool-2-thread-1] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLOntologyFactory 2023-02-09 15:18:32.920 [SwingWorker-pool-2-thread-1] INFO Injector Injecting values [[uk.ac.manchester.cs.owl.owlapi.OWLOntologyFactoryImpl@705c2c3b]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyFactories(java.util.Set). 2023-02-09 15:18:32.920 [SwingWorker-pool-2-thread-1] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLOntologyIRIMapper 2023-02-09 15:18:32.921 [SwingWorker-pool-2-thread-1] WARN Injector No files found for META-INF/services/org.semanticweb.owlapi.model.OWLOntologyIRIMapper 2023-02-09 15:18:32.922 [SwingWorker-pool-2-thread-1] INFO Injector Injecting values [[]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setIRIMappers(java.util.Set). 2023-02-09 15:18:32.922 [SwingWorker-pool-2-thread-1] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.io.OWLParserFactory 2023-02-09 15:18:32.924 [SwingWorker-pool-2-thread-1] INFO Injector Injecting values [[org.semanticweb.owlapi.functional.parser.OWLFunctionalSyntaxOWLParserFactory@5a58b07a, org.semanticweb.owlapi.rio.RioJsonParserFactory@6ef7e714, org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntaxOntologyParserFactory@b40cd24, org.semanticweb.owlapi.owlxml.parser.OWLXMLParserFactory@57fc7ff8, org.semanticweb.owlapi.rio.RioRDFaParserFactory@2a5c53f0, org.semanticweb.owlapi.rdf.turtle.parser.TurtleOntologyParserFactory@2982a82f, org.semanticweb.owlapi.rio.RioTrixParserFactory@42c424aa, org.semanticweb.owlapi.rio.RioN3ParserFactory@c2c8c1d, org.semanticweb.owlapi.krss2.parser.KRSS2OWLParserFactory@4a0034b1, org.semanticweb.owlapi.rio.RioJsonLDParserFactory@6a5c0eef, org.semanticweb.owlapi.rdf.rdfxml.parser.RDFXMLParserFactory@1c127c0a, org.semanticweb.owlapi.rio.RioNTriplesParserFactory@7bc2c4db, org.semanticweb.owlapi.rio.RioTrigParserFactory@2fcdc994, org.semanticweb.owlapi.oboformat.OBOFormatOWLAPIParserFactory@3fa9d370, org.semanticweb.owlapi.rio.RioRDFXMLParserFactory@42f86ec2, org.semanticweb.owlapi.dlsyntax.parser.DLSyntaxOWLParserFactory@20ed7c77, org.semanticweb.owlapi.rio.RioNQuadsParserFactory@71e3877e, org.semanticweb.owlapi.rio.RioBinaryRdfParserFactory@7b70d84e, org.semanticweb.owlapi.rio.RioTurtleParserFactory@a4f3cd1]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyParsers(java.util.Set). 2023-02-09 15:18:32.970 [SwingWorker-pool-2-thread-1] INFO LocalHttpClient Loaded ontology, now updating from server 2023-02-09 15:18:32.981 [SwingWorker-pool-2-thread-1] INFO SessionRecorder Changes equal ignored changes? false 2023-02-09 15:18:37.485 [AWT-EventQueue-0] INFO ProjectOptionsImpl There are no values for the project option: deprecated_concept_status 2023-02-09 15:18:37.487 [AWT-EventQueue-0] INFO LocalHttpClient ClientSessionChangeEvent: org.protege.editor.owl.client.event.ClientSessionChangeEvent@4dcd8d5e 2023-02-09 15:18:37.524 [AWT-EventQueue-0] INFO FilePrefs Instantiating node LuceneIndexPreferences 2023-02-09 15:18:37.525 [AWT-EventQueue-0] INFO FilePrefs Instantiating node KEY:4292c6f5-dc13-4617-8323-80e063af99dd 2023-02-09 15:18:37.526 [AWT-EventQueue-0] INFO SearchTabManager Initializing index delegator 2023-02-09 15:18:37.526 [AWT-EventQueue-0] INFO SearchTabManager Opening index directory at .protege\lucene\ProtegeIndex-4292c6f5-dc13-4617-8323-80e063af99dd-ebcdcbca 2023-02-09 15:18:37.596 [SwingWorker-pool-2-thread-1] INFO ProjectOptionsImpl There are no values for the project option: deprecated_concept_status 2023-02-09 15:18:37.597 [SwingWorker-pool-2-thread-1] INFO LocalHttpClient ClientSessionChangeEvent: org.protege.editor.owl.client.event.ClientSessionChangeEvent@6e8903b1 2023-02-09 15:18:38.025 [AWT-EventQueue-0] INFO FilePrefs Instantiating node org.protege.editor.owl.ui.usage.UsagePreferences 2023-02-09 15:18:38.067 [AWT-EventQueue-0] INFO FilePrefs Instantiating node class gov.nih.nci.ui.PropertyTableModelGO_Annotation 2023-02-09 15:18:38.359 [AWT-EventQueue-0] INFO FilePrefs Instantiating node class gov.nih.nci.ui.PropertyTableModelALT_DEFINITION 2023-02-09 15:18:38.384 [AWT-EventQueue-0] INFO FilePrefs Instantiating node class gov.nih.nci.ui.PropertyTableModelMaps_To 2023-02-09 15:18:38.415 [AWT-EventQueue-0] INFO FilePrefs Instantiating node class gov.nih.nci.ui.PropertyTableModelFULL_SYN 2023-02-09 15:18:38.451 [AWT-EventQueue-0] INFO FilePrefs Instantiating node class gov.nih.nci.ui.PropertyTableModelDEFINITION 2023-02-09 15:18:38.611 [SwingWorker-pool-2-thread-1] INFO SearchTabManager Updating index with 3 change(s) 2023-02-09 15:18:39.156 [SwingWorker-pool-2-thread-1] INFO SearchTabManager No value present 2023-02-09 15:18:39.156 [SwingWorker-pool-2-thread-1] ERROR SearchTabManager ... update index failed 2023-02-09 15:18:39.158 [SwingWorker-pool-2-thread-1] INFO SearchTabManager Updating index with 11 change(s) 2023-02-09 15:18:39.186 [SwingWorker-pool-2-thread-1] INFO SearchTabManager Updating index with 3 change(s) 2023-02-09 15:18:39.308 [SwingWorker-pool-2-thread-1] INFO SearchTabManager No value present 2023-02-09 15:18:39.308 [SwingWorker-pool-2-thread-1] ERROR SearchTabManager ... update index failed 2023-02-09 15:18:39.308 [SwingWorker-pool-2-thread-1] INFO SearchTabManager Updating index with 11 change(s) 2023-02-09 15:18:42.128 [AWT-EventQueue-0] INFO FilePrefs Instantiating node TREE_PREFERENCES 2023-02-09 15:19:03.913 [AWT-EventQueue-0] INFO EVSHistoryTab EVS History Tab initialized 2023-02-09 15:19:07.528 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:19:07.528 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:19:37.524 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:19:37.524 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:20:07.523 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:20:07.523 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:20:37.526 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:20:37.526 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:20:58.976 [AWT-EventQueue-0] INFO EVSHistoryTab EVS History Tab initialized 2023-02-09 15:21:07.522 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:21:07.522 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:21:15.426 [AWT-EventQueue-0] INFO EVSHistoryTab EVS History Tab initialized 2023-02-09 15:21:37.527 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:21:37.527 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:22:29.543 [SwingWorker-pool-2-thread-2] INFO SessionRecorder Changes equal ignored changes? false 2023-02-09 15:22:29.543 [SwingWorker-pool-2-thread-2] INFO SessionRecorder Changes equal ignored changes? false 2023-02-09 15:22:29.544 [SwingWorker-pool-2-thread-2] INFO SessionRecorder Changes equal ignored changes? false 2023-02-09 15:22:29.544 [SwingWorker-pool-2-thread-2] INFO SessionRecorder Changes equal ignored changes? false 2023-02-09 15:22:29.544 [SwingWorker-pool-2-thread-2] INFO SessionRecorder Changes equal ignored changes? false 2023-02-09 15:23:13.707 [SwingWorker-pool-2-thread-2] INFO SessionRecorder Changes equal ignored changes? false 2023-02-09 15:23:23.793 [SwingWorker-pool-2-thread-2] INFO Injector Injecting object uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@10a2d6ce 2023-02-09 15:23:23.794 [SwingWorker-pool-2-thread-2] INFO Injector Injecting values [[org.semanticweb.owlapi.dlsyntax.renderer.DLSyntaxHTMLStorerFactory@42a45424, org.semanticweb.owlapi.functional.renderer.FunctionalSyntaxStorerFactory@63fbe5bf, org.semanticweb.owlapi.manchestersyntax.renderer.ManchesterSyntaxStorerFactory@64c8464c, org.semanticweb.owlapi.rio.RioTrixStorerFactory@3e93e175, org.semanticweb.owlapi.rio.RioNQuadsStorerFactory@72275b4f, org.semanticweb.owlapi.rio.RioBinaryRdfStorerFactory@7248be21, org.semanticweb.owlapi.owlxml.renderer.OWLXMLStorerFactory@42423ccb, org.semanticweb.owlapi.rio.RioRDFXMLStorerFactory@79634028, org.semanticweb.owlapi.rio.RioTrigStorerFactory@76a631cd, org.semanticweb.owlapi.dlsyntax.renderer.DLSyntaxStorerFactory@65cb01c7, org.semanticweb.owlapi.rio.RioJsonLDStorerFactory@24866829, org.semanticweb.owlapi.rdf.turtle.renderer.TurtleStorerFactory@58125461, org.semanticweb.owlapi.oboformat.OBOFormatStorerFactory@2fb0f043, org.semanticweb.owlapi.rio.RioN3StorerFactory@45295c7d, org.semanticweb.owlapi.rio.RioNTriplesStorerFactory@6577a202, org.semanticweb.owlapi.rdf.rdfxml.renderer.RDFXMLStorerFactory@52d4dfa, org.semanticweb.owlapi.krss2.renderer.KRSS2OWLSyntaxStorerFactory@be595b2, org.semanticweb.owlapi.rio.RioJsonStorerFactory@43bbf662, org.semanticweb.owlapi.latex.renderer.LatexStorerFactory@647894c1, org.semanticweb.owlapi.rio.RioTurtleStorerFactory@662c2317]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyStorers(java.util.Set). 2023-02-09 15:23:23.794 [SwingWorker-pool-2-thread-2] INFO Injector Injecting values [[uk.ac.manchester.cs.owl.owlapi.OWLOntologyFactoryImpl@f4eb7e8]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyFactories(java.util.Set). 2023-02-09 15:23:23.794 [SwingWorker-pool-2-thread-2] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLOntologyIRIMapper 2023-02-09 15:23:23.794 [SwingWorker-pool-2-thread-2] WARN Injector No files found for META-INF/services/org.semanticweb.owlapi.model.OWLOntologyIRIMapper 2023-02-09 15:23:23.794 [SwingWorker-pool-2-thread-2] INFO Injector Injecting values [[]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setIRIMappers(java.util.Set). 2023-02-09 15:23:23.795 [SwingWorker-pool-2-thread-2] INFO Injector Injecting values [[org.semanticweb.owlapi.rio.RioJsonParserFactory@7a49f6ab, org.semanticweb.owlapi.oboformat.OBOFormatOWLAPIParserFactory@2a98e8fa, org.semanticweb.owlapi.rio.RioNTriplesParserFactory@7ac8306b, org.semanticweb.owlapi.owlxml.parser.OWLXMLParserFactory@5a16d413, org.semanticweb.owlapi.dlsyntax.parser.DLSyntaxOWLParserFactory@732c2ac4, org.semanticweb.owlapi.rio.RioJsonLDParserFactory@52d3265a, org.semanticweb.owlapi.krss2.parser.KRSS2OWLParserFactory@4f474ace, org.semanticweb.owlapi.rio.RioTrigParserFactory@7866c12a, org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntaxOntologyParserFactory@1e6a449, org.semanticweb.owlapi.rio.RioTrixParserFactory@4396fd25, org.semanticweb.owlapi.rio.RioRDFaParserFactory@4f817d37, org.semanticweb.owlapi.rio.RioRDFXMLParserFactory@58abce3d, org.semanticweb.owlapi.rdf.rdfxml.parser.RDFXMLParserFactory@2f72e4a5, org.semanticweb.owlapi.rio.RioNQuadsParserFactory@31e221fb, org.semanticweb.owlapi.rio.RioBinaryRdfParserFactory@6fabc751, org.semanticweb.owlapi.rdf.turtle.parser.TurtleOntologyParserFactory@3bcce9d6, org.semanticweb.owlapi.functional.parser.OWLFunctionalSyntaxOWLParserFactory@6e66f17a, org.semanticweb.owlapi.rio.RioN3ParserFactory@c2effd, org.semanticweb.owlapi.rio.RioTurtleParserFactory@7ba58a5]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyParsers(java.util.Set). 2023-02-09 15:23:23.854 [SwingWorker-pool-2-thread-2] INFO LocalHttpClient Loaded ontology, now updating from server 2023-02-09 15:23:23.855 [SwingWorker-pool-2-thread-2] INFO SessionRecorder Changes equal ignored changes? false 2023-02-09 15:23:27.268 [AWT-EventQueue-0] INFO ProjectOptionsImpl There are no values for the project option: deprecated_concept_status 2023-02-09 15:23:27.366 [AWT-EventQueue-0] INFO LocalHttpClient ClientSessionChangeEvent: org.protege.editor.owl.client.event.ClientSessionChangeEvent@10b51d8a 2023-02-09 15:23:27.390 [AWT-EventQueue-0] INFO SearchTabManager Initializing index delegator 2023-02-09 15:23:27.390 [AWT-EventQueue-0] INFO SearchTabManager Opening index directory at .protege\lucene\ProtegeIndex-4292c6f5-dc13-4617-8323-80e063af99dd-ebcdcbca 2023-02-09 15:23:27.452 [SwingWorker-pool-2-thread-2] INFO ProjectOptionsImpl There are no values for the project option: deprecated_concept_status 2023-02-09 15:23:27.566 [SwingWorker-pool-2-thread-2] INFO LocalHttpClient ClientSessionChangeEvent: org.protege.editor.owl.client.event.ClientSessionChangeEvent@68a2dd71 2023-02-09 15:23:34.936 [AWT-EventQueue-0] INFO EVSHistoryTab EVS History Tab initialized 2023-02-09 15:23:57.390 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:23:57.390 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:24:27.401 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:24:27.401 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:24:57.393 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:24:57.393 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:25:27.400 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:25:27.400 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:25:57.390 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:25:57.390 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:26:27.398 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:26:27.398 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:26:57.398 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:26:57.398 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:27:27.398 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:27:27.398 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:27:57.388 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:27:57.388 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:28:27.392 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:28:27.392 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:28:57.401 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:28:57.401 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:29:27.389 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:29:27.389 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:29:57.401 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:29:57.401 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:30:27.390 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:30:27.390 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:30:57.390 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:30:57.390 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:31:27.390 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:31:27.390 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:31:57.400 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:31:57.400 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:32:27.395 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:32:27.395 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:32:57.391 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:32:57.391 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:33:27.390 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:33:27.390 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:33:57.397 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:33:57.397 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:34:27.390 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:34:27.390 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:34:57.404 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:34:57.404 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:35:27.392 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:35:27.392 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:35:57.399 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:35:57.399 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2023-02-09 15:36:07.439 [Client-Server Communications] ERROR LocalHttpClient connect timed out java.net.SocketTimeoutException: connect timed out at java.net.DualStackPlainSocketImpl.waitForConnect(Native Method) ~[na:1.8.0_212] at java.net.DualStackPlainSocketImpl.socketConnect(DualStackPlainSocketImpl.java:85) ~[na:1.8.0_212] at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) ~[na:1.8.0_212] at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) ~[na:1.8.0_212] at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) ~[na:1.8.0_212] at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:172) ~[na:1.8.0_212] at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) ~[na:1.8.0_212] at java.net.Socket.connect(Socket.java:589) ~[na:1.8.0_212] at okhttp3.internal.platform.Platform.connectSocket(Platform.java:124) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.connection.RealConnection.connectSocket(RealConnection.java:220) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.connection.RealConnection.connect(RealConnection.java:146) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.connection.StreamAllocation.findConnection(StreamAllocation.java:186) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.connection.StreamAllocation.findHealthyConnection(StreamAllocation.java:121) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.connection.StreamAllocation.newStream(StreamAllocation.java:100) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.connection.ConnectInterceptor.intercept(ConnectInterceptor.java:42) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.cache.CacheInterceptor.intercept(CacheInterceptor.java:93) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.http.BridgeInterceptor.intercept(BridgeInterceptor.java:93) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.http.RetryAndFollowUpInterceptor.intercept(RetryAndFollowUpInterceptor.java:120) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92) ~[okhttp-3.6.0.jar:na] at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67) ~[okhttp-3.6.0.jar:na] at okhttp3.RealCall.getResponseWithInterceptorChain(RealCall.java:179) ~[okhttp-3.6.0.jar:na] at okhttp3.RealCall.execute(RealCall.java:63) ~[okhttp-3.6.0.jar:na] at org.protege.editor.owl.client.LocalHttpClient.retryCall(LocalHttpClient.java:909) [protege-editor-owl-5.1.2-SNAPSHOT.jar:na] at org.protege.editor.owl.client.LocalHttpClient.postWithProjectId(LocalHttpClient.java:891) [protege-editor-owl-5.1.2-SNAPSHOT.jar:na] at org.protege.editor.owl.client.LocalHttpClient.getRemoteHeadRevision(LocalHttpClient.java:748) [protege-editor-owl-5.1.2-SNAPSHOT.jar:na] at org.protege.editor.owl.client.action.EnableAutoUpdateAction$AutoUpdate.behindServer(EnableAutoUpdateAction.java:188) [protege-editor-owl-5.1.2-SNAPSHOT.jar:na] at org.protege.editor.owl.client.action.EnableAutoUpdateAction$AutoUpdate.run(EnableAutoUpdateAction.java:174) [protege-editor-owl-5.1.2-SNAPSHOT.jar:na] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) [na:1.8.0_212] at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:308) [na:1.8.0_212] at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:180) [na:1.8.0_212] at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:294) [na:1.8.0_212] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [na:1.8.0_212] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [na:1.8.0_212] at java.lang.Thread.run(Thread.java:748) [na:1.8.0_212]