2022-04-12 21:07:33.472 [main] INFO ProtegeApplication ------------------------------------ Protege ----------------------------------- 2022-04-12 21:07:33.474 [main] INFO ProtegeApplication Protege Desktop 2022-04-12 21:07:33.474 [main] INFO ProtegeApplication 2022-04-12 21:07:33.474 [main] INFO ProtegeApplication 2022-04-12 21:07:33.474 [main] INFO ProtegeApplication ----------------------------------- Platform ----------------------------------- 2022-04-12 21:07:33.474 [main] INFO ProtegeApplication Java: JVM 1.8.0_212-b04 Memory: 11185M 2022-04-12 21:07:33.475 [main] INFO ProtegeApplication Language: en, Country: US 2022-04-12 21:07:33.475 [main] INFO ProtegeApplication 2022-04-12 21:07:33.475 [main] INFO ProtegeApplication ------------------------------------ Plugins ----------------------------------- 2022-04-12 21:07:33.475 [main] INFO ProtegeApplication 2022-04-12 21:07:33.477 [main] INFO FilePrefs Instantiating node PROTEGE_PREFERENCES 2022-04-12 21:07:33.478 [main] INFO FilePrefs Instantiating node application_preferences 2022-04-12 21:07:33.479 [main] INFO FilePrefs Instantiating node LOOK_AND_FEEL_KEY 2022-04-12 21:07:33.503 [main] INFO FilePrefs Instantiating node org.protege.editor.owl.ui.renderer.OWLRendererPreferences 2022-04-12 21:07:33.624 [main] INFO ProtegeApplication Creating and setting up empty (default) editor kit 2022-04-12 21:07:33.630 [main] INFO OWLEditorKit OWL API Version: 5.1.6-SNAPSHOT.2022-03-31T19:40:26Z 2022-04-12 21:07:33.651 [main] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLOntologyManager 2022-04-12 21:07:33.662 [main] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLDataFactory 2022-04-12 21:07:33.838 [main] INFO Injector Injecting object uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@47f4e407 2022-04-12 21:07:33.848 [main] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.io.OWLParserFactory 2022-04-12 21:07:33.858 [main] INFO Injector Injecting values [[org.semanticweb.owlapi.rio.RioN3ParserFactory@3a0d172f, org.semanticweb.owlapi.rio.RioRDFXMLParserFactory@54d18072, org.semanticweb.owlapi.rio.RioTrigParserFactory@38f116f6, org.semanticweb.owlapi.rio.RioRDFaParserFactory@14dda234, org.semanticweb.owlapi.rio.RioJsonParserFactory@78365cfa, org.semanticweb.owlapi.rdf.rdfxml.parser.RDFXMLParserFactory@4bd1f8dd, org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntaxOntologyParserFactory@b7838a9, org.semanticweb.owlapi.krss2.parser.KRSS2OWLParserFactory@47a86fbb, org.semanticweb.owlapi.oboformat.OBOFormatOWLAPIParserFactory@5c18016b, org.semanticweb.owlapi.rio.RioNTriplesParserFactory@5b529706, org.semanticweb.owlapi.functional.parser.OWLFunctionalSyntaxOWLParserFactory@32811494, org.semanticweb.owlapi.rio.RioNQuadsParserFactory@2e9fda69, org.semanticweb.owlapi.rio.RioTrixParserFactory@85e6769, org.semanticweb.owlapi.rdf.turtle.parser.TurtleOntologyParserFactory@4c4748bf, org.semanticweb.owlapi.owlxml.parser.OWLXMLParserFactory@47c4ecdc, org.semanticweb.owlapi.rio.RioBinaryRdfParserFactory@256f8274, org.semanticweb.owlapi.rio.RioTurtleParserFactory@b70da4c, org.semanticweb.owlapi.rio.RioJsonLDParserFactory@6c5945a7, org.semanticweb.owlapi.dlsyntax.parser.DLSyntaxOWLParserFactory@3d3ba765]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyParsers(java.util.Set). 2022-04-12 21:07:33.859 [main] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLOntologyFactory 2022-04-12 21:07:33.861 [main] INFO Injector Injecting values [[uk.ac.manchester.cs.owl.owlapi.OWLOntologyFactoryImpl@4409e975]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyFactories(java.util.Set). 2022-04-12 21:07:33.861 [main] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLStorerFactory 2022-04-12 21:07:33.864 [main] INFO Injector Injecting values [[org.semanticweb.owlapi.rio.RioRDFXMLStorerFactory@7c541c15, org.semanticweb.owlapi.dlsyntax.renderer.DLSyntaxStorerFactory@4189d70b, org.semanticweb.owlapi.rio.RioNTriplesStorerFactory@2ccca26f, org.semanticweb.owlapi.rdf.turtle.renderer.TurtleStorerFactory@77a98a6a, org.semanticweb.owlapi.rio.RioNQuadsStorerFactory@2a2c13a8, org.semanticweb.owlapi.rio.RioJsonLDStorerFactory@5b1f29fa, org.semanticweb.owlapi.rio.RioTurtleStorerFactory@1c6804cd, org.semanticweb.owlapi.krss2.renderer.KRSS2OWLSyntaxStorerFactory@5d2a4eed, org.semanticweb.owlapi.rdf.rdfxml.renderer.RDFXMLStorerFactory@4b3a45f1, org.semanticweb.owlapi.functional.renderer.FunctionalSyntaxStorerFactory@a202ccb, org.semanticweb.owlapi.latex.renderer.LatexStorerFactory@62452cc9, org.semanticweb.owlapi.rio.RioJsonStorerFactory@774698ab, org.semanticweb.owlapi.manchestersyntax.renderer.ManchesterSyntaxStorerFactory@18025ced, org.semanticweb.owlapi.dlsyntax.renderer.DLSyntaxHTMLStorerFactory@7516e4e5, org.semanticweb.owlapi.owlxml.renderer.OWLXMLStorerFactory@20a14b55, org.semanticweb.owlapi.rio.RioTrixStorerFactory@5bd82fed, org.semanticweb.owlapi.oboformat.OBOFormatStorerFactory@6f0b0a5e, org.semanticweb.owlapi.rio.RioN3StorerFactory@72ea6193, org.semanticweb.owlapi.rio.RioTrigStorerFactory@4212a0c8, org.semanticweb.owlapi.rio.RioBinaryRdfStorerFactory@3381b4fc]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyStorers(java.util.Set). 2022-04-12 21:07:33.865 [main] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLOntologyIRIMapper 2022-04-12 21:07:33.865 [main] WARN Injector No files found for META-INF/services/org.semanticweb.owlapi.model.OWLOntologyIRIMapper 2022-04-12 21:07:33.865 [main] INFO Injector Injecting values [[]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setIRIMappers(java.util.Set). 2022-04-12 21:07:33.874 [main] INFO FilePrefs Instantiating node INFERENCE_PREFS_SET 2022-04-12 21:07:33.875 [main] INFO FilePrefs Instantiating node org.protege.editor.owl.model.inference.ReasonerPreferences 2022-04-12 21:07:33.880 [main] INFO FilePrefs Instantiating node gov.nih.nci.curator 2022-04-12 21:07:34.104 [main] INFO FilePrefs Instantiating node ANNOTATION_PREFS_SET 2022-04-12 21:07:34.105 [main] INFO FilePrefs Instantiating node HIDDEN_ANNOATIONS_URIS 2022-04-12 21:07:34.111 [main] INFO FilePrefs Instantiating node search.manager.preferences 2022-04-12 21:07:34.128 [main] INFO FilePrefs Instantiating node tabs 2022-04-12 21:07:34.129 [main] INFO FilePrefs Instantiating node visible_tabs 2022-04-12 21:07:34.130 [main] INFO FilePrefs Instantiating node custom_tabs 2022-04-12 21:07:34.134 [main] INFO FilePrefs Instantiating node ViewLayoutPreferences 2022-04-12 21:07:34.155 [main] INFO NCIEditTab NCI Edit Tab initialized 2022-04-12 21:07:34.155 [main] INFO NCIEditTab NCI Edit Tab initialized 2022-04-12 21:07:34.174 [main] INFO FilePrefs Instantiating node OntologyPreferences 2022-04-12 21:07:34.230 [main] WARN OWLModelManagerImpl Cannot generate ontology catalog for ontology at http://www.semanticweb.org/singhik/ontologies/2022/3/untitled-ontology-16 2022-04-12 21:07:34.306 [main] INFO FilePrefs Instantiating node org.protege.editor.core.ui.workspace.WorkspaceFrame 2022-04-12 21:07:34.568 [main] INFO FilePrefs Instantiating node LuceneTabPreferences 2022-04-12 21:07:34.625 [main] INFO ProtegeApplication ------------------------------- Auto-update Check ------------------------------ 2022-04-12 21:07:34.625 [main] INFO FilePrefs Instantiating node org.protege.editor.core.update.PluginManager 2022-04-12 21:07:34.626 [main] INFO ProtegeApplication Auto-update last performed: Tue Apr 12 18:24:55 EDT 2022 2022-04-12 21:07:34.626 [main] INFO ProtegeApplication Auto-update has been performed today. Not performing it again. 2022-04-12 21:07:34.626 [main] INFO ProtegeApplication 2022-04-12 21:07:38.642 [AWT-EventQueue-0] INFO FilePrefs Instantiating node org.protege.editor.owl.client 2022-04-12 21:07:38.643 [AWT-EventQueue-0] INFO FilePrefs Instantiating node SERVER_LOCATIONS 2022-04-12 21:07:46.144 [AWT-EventQueue-0] INFO FilePrefs Instantiating node PREFERRED_TAB_NAMES 2022-04-12 21:07:55.325 [SwingWorker-pool-2-thread-1] INFO SessionRecorder Changes equal ignored changes? false 2022-04-12 21:07:55.326 [SwingWorker-pool-2-thread-1] INFO SessionRecorder Changes equal ignored changes? false 2022-04-12 21:07:55.326 [SwingWorker-pool-2-thread-1] INFO SessionRecorder Changes equal ignored changes? false 2022-04-12 21:07:55.326 [SwingWorker-pool-2-thread-1] INFO SessionRecorder Changes equal ignored changes? false 2022-04-12 21:07:55.326 [SwingWorker-pool-2-thread-1] INFO SessionRecorder Changes equal ignored changes? false 2022-04-12 21:08:27.130 [SwingWorker-pool-2-thread-1] INFO SessionRecorder Changes equal ignored changes? false 2022-04-12 21:08:27.786 [SwingWorker-pool-2-thread-1] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLOntologyManager 2022-04-12 21:08:27.787 [SwingWorker-pool-2-thread-1] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLDataFactory 2022-04-12 21:08:27.789 [SwingWorker-pool-2-thread-1] INFO Injector Injecting object uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl@536c83a1 2022-04-12 21:08:27.789 [SwingWorker-pool-2-thread-1] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.io.OWLParserFactory 2022-04-12 21:08:27.790 [SwingWorker-pool-2-thread-1] INFO Injector Injecting values [[org.semanticweb.owlapi.dlsyntax.parser.DLSyntaxOWLParserFactory@51a98ba8, org.semanticweb.owlapi.krss2.parser.KRSS2OWLParserFactory@1b3c2ade, org.semanticweb.owlapi.rio.RioTrixParserFactory@47f9a9b, org.semanticweb.owlapi.rio.RioNTriplesParserFactory@1ade0a1b, org.semanticweb.owlapi.oboformat.OBOFormatOWLAPIParserFactory@41aa6dcf, org.semanticweb.owlapi.rio.RioJsonLDParserFactory@340dcaeb, org.semanticweb.owlapi.rio.RioNQuadsParserFactory@40deda79, org.semanticweb.owlapi.rio.RioTurtleParserFactory@75cad58d, org.semanticweb.owlapi.functional.parser.OWLFunctionalSyntaxOWLParserFactory@402a172d, org.semanticweb.owlapi.rio.RioJsonParserFactory@6f1379d, org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntaxOntologyParserFactory@2b4bbbe5, org.semanticweb.owlapi.rdf.turtle.parser.TurtleOntologyParserFactory@63efc060, org.semanticweb.owlapi.rio.RioN3ParserFactory@1acaf778, org.semanticweb.owlapi.rio.RioBinaryRdfParserFactory@3cb20b8, org.semanticweb.owlapi.owlxml.parser.OWLXMLParserFactory@36c8085e, org.semanticweb.owlapi.rio.RioTrigParserFactory@6e9bdb81, org.semanticweb.owlapi.rdf.rdfxml.parser.RDFXMLParserFactory@4c58ae83, org.semanticweb.owlapi.rio.RioRDFaParserFactory@159c8b02, org.semanticweb.owlapi.rio.RioRDFXMLParserFactory@58a0dffe]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyParsers(java.util.Set). 2022-04-12 21:08:27.790 [SwingWorker-pool-2-thread-1] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLOntologyFactory 2022-04-12 21:08:27.791 [SwingWorker-pool-2-thread-1] INFO Injector Injecting values [[uk.ac.manchester.cs.owl.owlapi.OWLOntologyFactoryImpl@239ab33e]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyFactories(java.util.Set). 2022-04-12 21:08:27.791 [SwingWorker-pool-2-thread-1] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLStorerFactory 2022-04-12 21:08:27.791 [SwingWorker-pool-2-thread-1] INFO Injector Injecting values [[org.semanticweb.owlapi.rdf.turtle.renderer.TurtleStorerFactory@4579bd98, org.semanticweb.owlapi.rio.RioTrixStorerFactory@295e179d, org.semanticweb.owlapi.rio.RioTurtleStorerFactory@7933230, org.semanticweb.owlapi.rdf.rdfxml.renderer.RDFXMLStorerFactory@3ac7b504, org.semanticweb.owlapi.rio.RioTrigStorerFactory@79853643, org.semanticweb.owlapi.latex.renderer.LatexStorerFactory@2bd4e533, org.semanticweb.owlapi.oboformat.OBOFormatStorerFactory@6398f4df, org.semanticweb.owlapi.functional.renderer.FunctionalSyntaxStorerFactory@331bab17, org.semanticweb.owlapi.rio.RioJsonStorerFactory@307539bb, org.semanticweb.owlapi.dlsyntax.renderer.DLSyntaxStorerFactory@6b85014a, org.semanticweb.owlapi.rio.RioRDFXMLStorerFactory@7818ae28, org.semanticweb.owlapi.owlxml.renderer.OWLXMLStorerFactory@6a20ab31, org.semanticweb.owlapi.manchestersyntax.renderer.ManchesterSyntaxStorerFactory@2d871df6, org.semanticweb.owlapi.rio.RioN3StorerFactory@3d878373, org.semanticweb.owlapi.rio.RioJsonLDStorerFactory@625f93a9, org.semanticweb.owlapi.krss2.renderer.KRSS2OWLSyntaxStorerFactory@2aeff2d7, org.semanticweb.owlapi.rio.RioBinaryRdfStorerFactory@142ac151, org.semanticweb.owlapi.dlsyntax.renderer.DLSyntaxHTMLStorerFactory@3e293512, org.semanticweb.owlapi.rio.RioNTriplesStorerFactory@61b9eb45, org.semanticweb.owlapi.rio.RioNQuadsStorerFactory@7f65eddb]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setOntologyStorers(java.util.Set). 2022-04-12 21:08:27.791 [SwingWorker-pool-2-thread-1] INFO Injector Loading file META-INF/services/org.semanticweb.owlapi.model.OWLOntologyIRIMapper 2022-04-12 21:08:27.791 [SwingWorker-pool-2-thread-1] WARN Injector No files found for META-INF/services/org.semanticweb.owlapi.model.OWLOntologyIRIMapper 2022-04-12 21:08:27.792 [SwingWorker-pool-2-thread-1] INFO Injector Injecting values [[]] on method public void uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.setIRIMappers(java.util.Set). 2022-04-12 21:08:27.807 [SwingWorker-pool-2-thread-1] INFO LocalHttpClient Loaded ontology, now updating from server 2022-04-12 21:08:27.811 [SwingWorker-pool-2-thread-1] INFO SessionRecorder Changes equal ignored changes? false 2022-04-12 21:08:37.024 [SwingWorker-pool-2-thread-1] INFO ProjectOptionsImpl There are no values for the project option: deprecated_concept_status 2022-04-12 21:08:37.025 [SwingWorker-pool-2-thread-1] INFO LocalHttpClient ClientSessionChangeEvent: org.protege.editor.owl.client.event.ClientSessionChangeEvent@67849e3f 2022-04-12 21:08:37.141 [AWT-EventQueue-0] INFO ProjectOptionsImpl There are no values for the project option: deprecated_concept_status 2022-04-12 21:08:37.141 [AWT-EventQueue-0] INFO LocalHttpClient ClientSessionChangeEvent: org.protege.editor.owl.client.event.ClientSessionChangeEvent@15ad5642 2022-04-12 21:08:37.144 [AWT-EventQueue-0] INFO FilePrefs Instantiating node LuceneIndexPreferences 2022-04-12 21:08:37.145 [AWT-EventQueue-0] INFO FilePrefs Instantiating node KEY:14377429-2cc0-4a3f-be72-53aefb23673e 2022-04-12 21:08:37.146 [AWT-EventQueue-0] INFO SearchTabManager Initializing index delegator 2022-04-12 21:08:37.147 [AWT-EventQueue-0] INFO SearchTabManager Opening index directory at .protege\lucene\ProtegeIndex-14377429-2cc0-4a3f-be72-53aefb23673e-1eb8e2c4 2022-04-12 21:08:37.575 [AWT-EventQueue-0] INFO FilePrefs Instantiating node org.protege.editor.owl.ui.usage.UsagePreferences 2022-04-12 21:08:37.610 [AWT-EventQueue-0] INFO FilePrefs Instantiating node class gov.nih.nci.ui.PropertyTableModelGO_Annotation 2022-04-12 21:08:37.933 [AWT-EventQueue-0] INFO FilePrefs Instantiating node class gov.nih.nci.ui.PropertyTableModelALT_DEFINITION 2022-04-12 21:08:37.945 [AWT-EventQueue-0] INFO FilePrefs Instantiating node class gov.nih.nci.ui.PropertyTableModelMaps_To 2022-04-12 21:08:37.957 [AWT-EventQueue-0] INFO FilePrefs Instantiating node class gov.nih.nci.ui.PropertyTableModelFULL_SYN 2022-04-12 21:08:37.969 [AWT-EventQueue-0] INFO FilePrefs Instantiating node class gov.nih.nci.ui.PropertyTableModelDEFINITION 2022-04-12 21:08:38.032 [SwingWorker-pool-2-thread-1] INFO SearchTabManager Updating index with 150 change(s) 2022-04-12 21:08:38.991 [AWT-EventQueue-0] INFO FilePrefs Instantiating node TREE_PREFERENCES 2022-04-12 21:09:07.150 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2022-04-12 21:09:07.150 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2022-04-12 21:09:37.139 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates 2022-04-12 21:09:37.139 [Client-Server Communications] INFO EnableAutoUpdateAction Checking for updates