You will need to install VariantValidator >1.0 and the necessary databases identified in the INSTALLATION.md
The packages required for VariantValidator to function are now set up in the environment "vvenv".
To clone this software from GIT, use:
$ git clone https://github.com/openvar/variantFormatter.git
$ cd variantFormatter/
Run the installation script to integrate VariantFormatter with python's site packages.
$ python setup.py install
For development purposes, you can use
$ pip install -e .
to ensure any changes you make in the local variant validator folder is reflected in your python site-packages.
See the manual for configuration instructions.
Copyright (C) 2019 Peter Causey-Freeman, University of LeicesterThis program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License along with this program. If not, see https://www.gnu.org/licenses/.