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@Nanostring-Biostats

NanoString Technologies, Inc.

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  1. CosMx-Analysis-Scratch-Space CosMx-Analysis-Scratch-Space Public

    This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of top…

    HTML 38 4

  2. GeomxTools GeomxTools Public

    Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.

    R 35 16

  3. InSituType InSituType Public

    An R package for performing cell typing in SMI and other single cell data

    HTML 29 11

  4. SpatialOmicsOverlay SpatialOmicsOverlay Public

    Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).

    R 18 4

  5. InSituCor InSituCor Public

    InSituCor An R package for discovering modules of spatially correlated genes in spatial transcriptomics data.

    HTML 2

  6. FastReseg FastReseg Public

    FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.

    HTML 4 1

Repositories

Showing 10 of 39 repositories
  • CosMx-Analysis-Scratch-Space Public

    This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.

    Nanostring-Biostats/CosMx-Analysis-Scratch-Space’s past year of commit activity
    HTML 38 4 21 3 Updated Nov 22, 2024
  • CosMxDACustomModules Public

    Repository for custom module scripts for SMIDA

    Nanostring-Biostats/CosMxDACustomModules’s past year of commit activity
    HTML 12 0 2 0 Updated Nov 8, 2024
  • childhood-onset-lupus-nephritis-analyses Public

    Analyses from the manuscript, "Single cell spatial transcriptomic profiling of childhood-onset lupus nephritis reveals complex interactions between kidney stroma and infiltrating immune cells"

    Nanostring-Biostats/childhood-onset-lupus-nephritis-analyses’s past year of commit activity
    R 0 MIT 0 0 1 Updated Oct 27, 2024
  • InSituCor Public

    InSituCor An R package for discovering modules of spatially correlated genes in spatial transcriptomics data.

    Nanostring-Biostats/InSituCor’s past year of commit activity
    HTML 2 0 10 1 Updated Sep 30, 2024
  • DSPPlugins Public

    Repository for DSP Plugins

    Nanostring-Biostats/DSPPlugins’s past year of commit activity
    HTML 10 4 9 0 Updated Sep 18, 2024
  • CosMx-Cell-Profiles Public
    Nanostring-Biostats/CosMx-Cell-Profiles’s past year of commit activity
    R 5 1 1 1 Updated Sep 18, 2024
  • GeomxTools Public

    Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.

    Nanostring-Biostats/GeomxTools’s past year of commit activity
    R 35 MIT 16 31 1 Updated Sep 17, 2024
  • InSituType Public

    An R package for performing cell typing in SMI and other single cell data

    Nanostring-Biostats/InSituType’s past year of commit activity
    HTML 29 11 19 0 Updated Aug 19, 2024
  • FastReseg Public

    FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.

    Nanostring-Biostats/FastReseg’s past year of commit activity
    HTML 4 1 6 1 Updated Jun 6, 2024
  • CellProfileLibrary Public
    Nanostring-Biostats/CellProfileLibrary’s past year of commit activity
    27 13 8 1 Updated May 23, 2024
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