An R package for discovering modules of spatially correlated genes in spatial transcriptomics data.
- The "insitucor" function runs the whole pipeline.
- Alternatively, you can run the intermediate wrapper functions one at a time.
- R (>= 3.5.0)
- UNIX, Mac or Windows
- see DESCRIPTION for full dependencies
See the "vignettes" folder. Vignettes should run in <2 minutes.
The "insitucor" function runs the complete workflow.
The analyses from the manuscript will be made available at https://github.com/Nanostring-Biostats/InSituCor-manuscript-analyses.
devtools::install_github("https://github.com/Nanostring-Biostats/InSituCor")
Installation should take < 1 min on a normal desktop computer.