System OS: Windows 10, Architecture: AMD64 Java Info: 11.0.9.1, OpenJDK 64-Bit Server VM, AdoptOpenJDK .NET Core Info: N/A Version info: FragPipe version 19.1 MSFragger version 3.7 IonQuant version 1.8.10 Philosopher version 4.8.1 LCMS files: Experiment/Group: S22049_Arjun_1 - D:\JAM\Sylvain\S22049-Arjun-1.raw DDA Experiment/Group: S22049_Arjun_10 - D:\JAM\Sylvain\S22049-Arjun-10.raw DDA Experiment/Group: S22049_Arjun_100 - D:\JAM\Sylvain\S22049-Arjun-100.raw DDA Experiment/Group: S22049_Arjun_101 - D:\JAM\Sylvain\S22049-Arjun-101.raw DDA Experiment/Group: S22049_Arjun_102 - D:\JAM\Sylvain\S22049-Arjun-102.raw DDA Experiment/Group: S22049_Arjun_103 - D:\JAM\Sylvain\S22049-Arjun-103.raw DDA Experiment/Group: S22049_Arjun_104 - D:\JAM\Sylvain\S22049-Arjun-104.raw DDA Experiment/Group: S22049_Arjun_105 - D:\JAM\Sylvain\S22049-Arjun-105.raw DDA Experiment/Group: S22049_Arjun_106 - D:\JAM\Sylvain\S22049-Arjun-106.raw DDA Experiment/Group: S22049_Arjun_107 - 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D:\JAM\Sylvain\S22049-Arjun-119.raw DDA Experiment/Group: S22049_Arjun_12 - D:\JAM\Sylvain\S22049-Arjun-12.raw DDA Experiment/Group: S22049_Arjun_120 - D:\JAM\Sylvain\S22049-Arjun-120.raw DDA Experiment/Group: S22049_Arjun_121 - D:\JAM\Sylvain\S22049-Arjun-121.raw DDA Experiment/Group: S22049_Arjun_122 - D:\JAM\Sylvain\S22049-Arjun-122.raw DDA Experiment/Group: S22049_Arjun_123 - D:\JAM\Sylvain\S22049-Arjun-123.raw DDA Experiment/Group: S22049_Arjun_125 - D:\JAM\Sylvain\S22049-Arjun-125.raw DDA Experiment/Group: S22049_Arjun_126 - D:\JAM\Sylvain\S22049-Arjun-126.raw DDA Experiment/Group: S22049_Arjun_127 - D:\JAM\Sylvain\S22049-Arjun-127.raw DDA Experiment/Group: S22049_Arjun_128 - D:\JAM\Sylvain\S22049-Arjun-128.raw DDA Experiment/Group: S22049_Arjun_129 - D:\JAM\Sylvain\S22049-Arjun-129.raw DDA Experiment/Group: S22049_Arjun_13 - D:\JAM\Sylvain\S22049-Arjun-13.raw DDA Experiment/Group: S22049_Arjun_130 - D:\JAM\Sylvain\S22049-Arjun-130.raw DDA Experiment/Group: S22049_Arjun_131 - 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D:\JAM\Sylvain\S22049-Arjun-96.raw DDA Experiment/Group: S22049_Arjun_97 - D:\JAM\Sylvain\S22049-Arjun-97.raw DDA Experiment/Group: S22049_Arjun_98 - D:\JAM\Sylvain\S22049-Arjun-98.raw DDA Experiment/Group: S22049_Arjun_99 - D:\JAM\Sylvain\S22049-Arjun-99.raw DDA 1725 commands to execute: CheckCentroid D:\JAM\fragpipe\jre\bin\java.exe -Xmx30G -cp "D:\JAM\fragpipe\lib\fragpipe-19.1.jar;D:\JAM\fragpipe\tools\batmass-io-1.28.9.jar" com.dmtavt.fragpipe.util.CheckCentroid D:\JAM\Sylvain\S22049-Arjun-1.raw 7 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c94f8d46-567d-44bd-8fb8-6c16abf28b57 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\9b0cc359-21af-4d38-88fe-4e4724db6b27 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\543419e4-c759-40d5-b252-39e56184428e WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\0ac9e2f8-eaea-4991-ab58-6240f687a09d WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\e642189d-6980-475e-8002-c42e0e4a5640 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c422ed02-0bab-4184-8d8b-caa2e97a110a WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\8590a678-3ae1-4eb8-98af-9403a59d95d8 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\8a0842c5-1f7f-4b30-b02a-ee131b027759 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\eea075a3-58ba-417b-8f34-f88d4b3a76de WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\61bfe244-d76b-4a83-a958-f0fbcea713cc WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\d346414f-07bf-4cce-87e4-75650c3ca6d4 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c947eb1c-2710-4586-9b5b-c5adefea24df WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\e28b2b94-c760-4829-9787-f23381ae8cb0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\696d87f0-1d1e-440a-99d2-eda6987c7d1d WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\229cf57c-6a4c-4b60-9231-6ce47877a4c5 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\e5f7f9f9-b9e0-4229-8db8-a40519004723 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\74789674-7d0e-45b7-8655-dac0d04498d6 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f9350462-7e45-4de3-ba73-7a896c51ef81 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\cd4398d0-d42a-467f-aedd-5924942f27f5 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\b17ff57c-5bbd-4548-a9d3-da0a6cdee970 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\b504ffdd-5857-4803-bbb1-ddcc4ea80c0a WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\a968651a-1d9e-409f-b5c9-b2617d5155b5 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f794cabf-00c4-4177-9fb7-d21a3de4e0ee WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\e16437e1-e5c7-4b5d-a114-858495e432f4 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f8fe481f-4569-42e1-bae8-b24d437d5d94 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\cc778239-0935-4214-ac6d-4512df7e9572 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c8598711-7c42-448f-8a90-9b61c7bfa11c WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\73f39c4b-c667-445c-8daf-412aa30ea8a9 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\8c984edd-8c41-4362-8311-f91ad45ac229 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\5b920690-a42a-4fe8-a082-a4b86cb65450 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\2ec20cbe-329a-48ff-9096-a092888f3142 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\7541482e-9dfc-4200-a8bf-7cfc68d8b705 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\3860dedf-79ee-49a4-b660-3a98c54cff08 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\a0cbd6de-3208-4bc8-bf3c-dcdf72d33ff7 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\8f70fc19-5d0b-4a14-9e07-18a479b81b94 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\47c7cf23-f5e4-465e-938c-20a276251468 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\92e71a51-00f2-4935-8f7a-0819d116bddb WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\eec767b6-8e05-44e8-9db7-f5dc65d3b113 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\eee630cc-4503-4485-800a-d2d8a3d550d6 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\adf0b238-29e5-4c5f-8399-77f01c1cc9a4 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\dcfe8be0-7b5b-4c41-86f3-41d0c268a0a3 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f948ffda-5567-43dc-9496-9ffa7ebb0e52 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\e41c2224-5d83-4f08-852e-07114df81f0e WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\52e1aaf6-2f0f-4e88-8933-8d3a755114bd WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\38480473-b7e4-4c76-af03-5b2c17656ec4 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\a885803f-0c6b-466f-971b-4790dbcd39fe WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\0f178b6f-f5bb-40f7-948a-4fdae8cf5960 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\8d52fb56-4bbf-474a-be67-7b490dfa4564 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\9a5a8fb4-8dc2-4c25-9285-e6262ef3b29e WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\5c8872a8-d1a1-4df7-b347-0311de2d84a8 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\d28ac757-d242-441f-ac3b-b374377064d9 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\495e5ef2-fd6f-4fa1-90f3-bce26d96c1a9 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\8c1f71ff-b4d4-47a7-a433-d02afcc26962 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\0bf8f0ec-36d2-4750-b2b8-85317b5ecca0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\2172860e-43c7-490b-876f-9effbd987292 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f74e5616-89ed-42dc-8dd3-d8e576fd5dcc WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\113ea79f-4636-4c98-89e0-628156a0aad9 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c6c4cf33-756b-4ef5-be0b-12e80d88f73f WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\64e0f05a-7216-4442-991f-fdd5dce0d481 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\34da92cf-c57f-412f-aac6-3bc24e826ce8 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\7754a202-1aa9-488e-94a0-11171a9cd997 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\d4c9605d-f91c-4f4b-b453-7848805b794b WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\24a0e07c-ca7b-4472-b2b4-d83f95e0afb9 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\ed64885c-b173-4600-8697-b6aef47d0921 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f8fe8887-7dd6-45e3-982f-77f1cfcf29e3 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\b3efb3fc-3b68-4384-8f83-e50343a81e70 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f4138aaf-efc6-4d9d-b744-7db297b20de2 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\7c0a141a-809c-40e3-99e5-9b9773b1dffb WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\3a7b417a-4c5e-4b8c-8420-f9847aa4fb6f WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\d336376f-8e54-4c5f-b7de-b74c8796b3f1 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\9ee9e9df-4623-4ed4-8d33-3247c05f1783 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f47b35ad-a77f-4eae-aebb-16d52a9388f7 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c0b424a2-2bf9-464b-bb59-b6ded7295e88 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\210f4432-bd85-40a2-974f-bf75df6dc9ae WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\4d7aafe3-a22f-47e1-a141-cf67d6d20ee2 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\fc253de1-6f3d-46b8-949c-d5aa2fd4585e WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\abf8f913-f0e4-41f0-a82d-3997510f5bec WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\ca91430f-6562-452e-908d-c18bd0b5c5e7 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\472b9140-f637-4f41-84c8-c3a2f6f98c0c WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\2a079b3b-526e-4970-b079-f2cd1ae62745 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c941bc64-1829-4eca-ba6a-cf07187f216d WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\883630a8-f727-4023-b0ab-ae40ba16d0fe WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\fa0cde00-d1c6-44a2-bb5c-427a612e3354 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\acd8f016-ac60-4d04-ac49-f725d4f082ff WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\e08cbf8b-278f-4034-835b-d38a841354ca WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\95f5547b-ebda-48a5-98de-4fe4b27c0879 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\0d9e239e-b1f5-48e6-80e6-2e7705e1a074 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\4f7a5e86-66e8-4dc0-96c1-7e48ce1d5f6e WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\960a2035-5b82-46a1-baa8-18a5e26834f3 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\963ccb82-3639-4388-9371-5c78949cb45f WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\90a6b38c-6131-4688-80dc-a9ee6472e1ed WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\20510952-f511-459a-a2b7-44ab99318ad2 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\1e16d697-f5c1-479e-9f19-a416e2f95ccc WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\dfd3feda-c6db-41c0-a1f6-ac2b150a6e05 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\1e82f5be-2e58-49f6-afeb-1f2e1dba5863 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\d8e3d4e2-117e-4ffa-82cb-7090484c9d39 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\77299b0d-2342-4cfc-aa03-40bea9e88aa9 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\a72e1d1c-4f8a-478c-971a-e5514fcb62b5 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\301db16e-5f77-4041-ab60-69f1dfafa320 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\0f1280dc-b67a-4ed0-b22d-dbf1a08afb0e WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\3eccc63e-7bb2-4fb4-a34e-039e7b9df1e3 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\9f1ff5de-2d65-4647-809b-b664c22aac75 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\69de6793-cafd-41ff-9a90-7e667964bf4b WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\4841e4a0-27ef-48a9-a665-e6ec3c7d81b8 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\df4880c3-1db1-4e6c-8c02-62680b8c8759 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\7024443d-adeb-4a86-93c7-9508524caead WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\4a9636cd-9914-43e2-aa4b-5170fbd9b3ba WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\6dff56a7-d3a9-4dce-8c38-58d69e41dd59 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\5c65844e-db54-4b4e-a790-9de215ebb57b WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\7685e739-2e24-4571-afb7-902d0552cd16 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\8e3f590b-08c2-41a5-8a13-724f3108ace3 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\ef70f08b-b18d-4408-8d83-c397298d506e WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\5d60b7b7-0f8d-42b4-8431-ed78de0e5088 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\516fa28c-50ed-46ec-a306-bbc96f5f98e3 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\b4718fc0-902b-415d-bb92-70e957953c05 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\6b69ef24-0bb4-438a-abd0-710fd18f24cf WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\316dfb24-dca3-4021-a82c-74ba7b61eaca WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c4b02a5e-0725-4ffc-9579-c639265084d2 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\ebdcf987-fe8d-4a08-9c3f-68bd709c6512 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\0ec29c64-7fb9-48da-b54b-4a5c6072f3cb WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\feb992b2-2ffe-459e-94ec-7c4d35873b26 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\becf3fe1-4f0c-414e-9d93-962f0b32f20c WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\2d22710f-c0ff-4f42-8a76-c545990ed307 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\45689b1e-5e28-4715-b39b-35f4a906facf WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\65216afe-4d74-486e-b5b8-a241f0a71d92 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\60f2cdbe-fbf7-4e72-ad66-5604049e8e37 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\01789d1f-dd63-4e95-945c-73ef67f306f3 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\10b4da56-eb43-405e-a62b-a99650ad6536 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f0473833-2742-4101-bf82-40040d8d8ad8 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\a2f33ce4-8e42-404e-bfd4-11dfc4a72fbb WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\80d217ec-b07e-46bf-9975-5aac562b778c WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\5784d635-4ebe-4a22-a4b1-ccbe050001f6 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\7fde390f-8ce8-458d-b7d3-106ed9d6e89c WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\bee8c1cb-5a2b-415f-a03d-d779b31c6fd0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\31ae58c8-9be3-4c47-b2ee-ff41f014292c WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\13a21fb1-36b0-431b-b71f-4c488f20bb30 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\02a1d31d-2c78-49c2-b853-73d90c19e971 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\14d6c98b-828f-4a96-b5a0-d55774ade8a5 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\baa8ef61-f646-44ec-a4a9-d85c744b6b88 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\cca195f9-bf7d-4330-a129-700316163471 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\5cf52c67-d232-4d40-9b7e-df7f2378ef67 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c7c5f95b-4629-46f6-8d2c-f596c4161e3c WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\cd4b08f9-6864-4ffc-babc-ca5840f40ff7 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\fbf68f9f-23b8-4023-89f3-8b4747b53ab7 MSFragger [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\jre\bin\java.exe -jar -Dfile.encoding=UTF-8 -Xmx30G D:\JAM\fragpipe\tools\MSFragger-3.7\MSFragger-3.7.jar 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D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-111.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111\S22049-Arjun-111.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-112.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112\S22049-Arjun-112.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-112.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112\S22049-Arjun-112.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-113.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113\S22049-Arjun-113.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-113.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113\S22049-Arjun-113.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-114.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114\S22049-Arjun-114.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-114.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114\S22049-Arjun-114.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-115.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115\S22049-Arjun-115.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-115.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115\S22049-Arjun-115.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-116.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116\S22049-Arjun-116.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-116.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116\S22049-Arjun-116.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-117.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117\S22049-Arjun-117.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-117.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117\S22049-Arjun-117.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-118.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118\S22049-Arjun-118.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-118.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118\S22049-Arjun-118.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-119.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119\S22049-Arjun-119.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-119.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119\S22049-Arjun-119.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-12.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12\S22049-Arjun-12.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-12.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12\S22049-Arjun-12.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-120.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120\S22049-Arjun-120.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-120.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120\S22049-Arjun-120.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-121.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121\S22049-Arjun-121.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-121.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121\S22049-Arjun-121.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-122.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122\S22049-Arjun-122.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-122.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122\S22049-Arjun-122.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-123.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\S22049-Arjun-123.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-123.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\S22049-Arjun-123.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-125.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125\S22049-Arjun-125.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-125.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125\S22049-Arjun-125.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-126.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126\S22049-Arjun-126.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-126.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126\S22049-Arjun-126.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-127.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127\S22049-Arjun-127.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-127.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127\S22049-Arjun-127.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-128.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128\S22049-Arjun-128.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-128.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128\S22049-Arjun-128.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-129.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129\S22049-Arjun-129.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-129.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129\S22049-Arjun-129.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-13.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13\S22049-Arjun-13.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-13.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13\S22049-Arjun-13.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-130.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130\S22049-Arjun-130.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-130.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130\S22049-Arjun-130.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-131.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131\S22049-Arjun-131.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-131.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131\S22049-Arjun-131.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-132.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132\S22049-Arjun-132.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-132.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132\S22049-Arjun-132.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-133.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133\S22049-Arjun-133.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-133.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133\S22049-Arjun-133.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-134.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134\S22049-Arjun-134.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-134.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134\S22049-Arjun-134.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-135.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135\S22049-Arjun-135.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-135.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135\S22049-Arjun-135.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-136.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136\S22049-Arjun-136.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-136.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136\S22049-Arjun-136.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-137.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137\S22049-Arjun-137.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-137.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137\S22049-Arjun-137.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-138.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138\S22049-Arjun-138.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-138.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138\S22049-Arjun-138.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-139.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139\S22049-Arjun-139.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-139.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139\S22049-Arjun-139.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-14.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14\S22049-Arjun-14.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-14.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14\S22049-Arjun-14.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-140.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140\S22049-Arjun-140.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-140.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140\S22049-Arjun-140.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-141.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141\S22049-Arjun-141.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-141.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141\S22049-Arjun-141.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-142.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142\S22049-Arjun-142.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-142.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142\S22049-Arjun-142.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-143.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143\S22049-Arjun-143.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-143.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143\S22049-Arjun-143.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-144.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144\S22049-Arjun-144.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-144.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144\S22049-Arjun-144.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-15.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15\S22049-Arjun-15.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-15.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15\S22049-Arjun-15.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-16.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16\S22049-Arjun-16.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-16.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16\S22049-Arjun-16.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-17.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17\S22049-Arjun-17.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-17.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17\S22049-Arjun-17.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-18.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18\S22049-Arjun-18.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-18.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18\S22049-Arjun-18.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-19.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19\S22049-Arjun-19.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-19.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19\S22049-Arjun-19.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-2.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2\S22049-Arjun-2.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-2.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2\S22049-Arjun-2.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-20.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20\S22049-Arjun-20.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-20.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20\S22049-Arjun-20.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-21.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21\S22049-Arjun-21.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-21.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21\S22049-Arjun-21.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-22.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22\S22049-Arjun-22.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-22.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22\S22049-Arjun-22.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-23.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23\S22049-Arjun-23.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-23.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23\S22049-Arjun-23.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-24.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24\S22049-Arjun-24.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-24.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24\S22049-Arjun-24.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-25.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25\S22049-Arjun-25.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-25.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25\S22049-Arjun-25.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-26.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26\S22049-Arjun-26.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-26.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26\S22049-Arjun-26.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-27.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27\S22049-Arjun-27.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-27.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27\S22049-Arjun-27.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-28.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28\S22049-Arjun-28.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-28.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28\S22049-Arjun-28.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-29.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29\S22049-Arjun-29.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-29.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29\S22049-Arjun-29.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-3.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3\S22049-Arjun-3.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-3.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3\S22049-Arjun-3.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-30.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30\S22049-Arjun-30.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-30.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30\S22049-Arjun-30.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-31.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31\S22049-Arjun-31.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-31.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31\S22049-Arjun-31.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-32.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32\S22049-Arjun-32.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-32.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32\S22049-Arjun-32.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-33.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33\S22049-Arjun-33.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-33.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33\S22049-Arjun-33.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-34.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34\S22049-Arjun-34.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-34.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34\S22049-Arjun-34.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-35.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35\S22049-Arjun-35.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-35.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35\S22049-Arjun-35.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-36.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36\S22049-Arjun-36.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-36.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36\S22049-Arjun-36.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-37.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37\S22049-Arjun-37.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-37.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37\S22049-Arjun-37.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-38.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38\S22049-Arjun-38.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-38.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38\S22049-Arjun-38.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-39.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39\S22049-Arjun-39.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-39.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39\S22049-Arjun-39.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-4.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4\S22049-Arjun-4.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-4.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4\S22049-Arjun-4.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-40.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40\S22049-Arjun-40.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-40.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40\S22049-Arjun-40.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-41.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41\S22049-Arjun-41.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-41.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41\S22049-Arjun-41.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-42.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42\S22049-Arjun-42.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-42.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42\S22049-Arjun-42.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-43.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43\S22049-Arjun-43.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-43.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43\S22049-Arjun-43.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-44.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44\S22049-Arjun-44.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-44.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44\S22049-Arjun-44.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-45.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45\S22049-Arjun-45.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-45.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45\S22049-Arjun-45.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-46.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46\S22049-Arjun-46.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-46.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46\S22049-Arjun-46.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-47.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47\S22049-Arjun-47.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-47.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47\S22049-Arjun-47.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-48.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48\S22049-Arjun-48.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-48.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48\S22049-Arjun-48.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-49.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49\S22049-Arjun-49.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-49.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49\S22049-Arjun-49.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-5.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5\S22049-Arjun-5.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-5.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5\S22049-Arjun-5.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-50.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50\S22049-Arjun-50.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-50.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50\S22049-Arjun-50.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-51.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51\S22049-Arjun-51.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-51.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51\S22049-Arjun-51.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-52.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52\S22049-Arjun-52.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-52.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52\S22049-Arjun-52.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-53.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53\S22049-Arjun-53.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-53.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53\S22049-Arjun-53.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-54.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54\S22049-Arjun-54.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-54.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54\S22049-Arjun-54.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-55.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55\S22049-Arjun-55.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-55.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55\S22049-Arjun-55.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-56.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56\S22049-Arjun-56.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-56.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56\S22049-Arjun-56.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-57.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57\S22049-Arjun-57.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-57.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57\S22049-Arjun-57.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-58-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd\S22049-Arjun-58-2nd.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-58-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd\S22049-Arjun-58-2nd.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-59-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd\S22049-Arjun-59-2nd.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-59-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd\S22049-Arjun-59-2nd.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-6.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6\S22049-Arjun-6.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-6.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6\S22049-Arjun-6.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-60-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd\S22049-Arjun-60-2nd.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-60-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd\S22049-Arjun-60-2nd.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-61-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd\S22049-Arjun-61-2nd.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-61-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd\S22049-Arjun-61-2nd.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-62-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd\S22049-Arjun-62-2nd.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-62-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd\S22049-Arjun-62-2nd.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-63-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd\S22049-Arjun-63-2nd.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-63-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd\S22049-Arjun-63-2nd.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-64-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd\S22049-Arjun-64-2nd.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-64-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd\S22049-Arjun-64-2nd.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-65-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd\S22049-Arjun-65-2nd.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-65-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd\S22049-Arjun-65-2nd.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-66-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd\S22049-Arjun-66-2nd.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-66-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd\S22049-Arjun-66-2nd.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-67.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67\S22049-Arjun-67.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-67.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67\S22049-Arjun-67.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-68.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68\S22049-Arjun-68.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-68.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68\S22049-Arjun-68.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-69.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69\S22049-Arjun-69.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-69.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69\S22049-Arjun-69.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-7.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7\S22049-Arjun-7.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-7.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7\S22049-Arjun-7.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-70.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70\S22049-Arjun-70.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-70.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70\S22049-Arjun-70.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-71.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71\S22049-Arjun-71.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-71.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71\S22049-Arjun-71.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-72.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72\S22049-Arjun-72.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-72.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72\S22049-Arjun-72.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-73.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73\S22049-Arjun-73.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-73.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73\S22049-Arjun-73.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-74.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74\S22049-Arjun-74.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-74.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74\S22049-Arjun-74.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-75.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75\S22049-Arjun-75.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-75.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75\S22049-Arjun-75.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-76.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76\S22049-Arjun-76.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-76.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76\S22049-Arjun-76.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-77.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77\S22049-Arjun-77.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-77.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77\S22049-Arjun-77.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-78.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78\S22049-Arjun-78.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-78.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78\S22049-Arjun-78.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-79.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79\S22049-Arjun-79.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-79.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79\S22049-Arjun-79.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-8.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8\S22049-Arjun-8.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-8.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8\S22049-Arjun-8.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-80.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80\S22049-Arjun-80.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-80.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80\S22049-Arjun-80.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-81.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81\S22049-Arjun-81.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-81.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81\S22049-Arjun-81.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-82.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82\S22049-Arjun-82.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-82.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82\S22049-Arjun-82.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-83.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83\S22049-Arjun-83.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-83.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83\S22049-Arjun-83.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-84-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd\S22049-Arjun-84-2nd.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-84-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd\S22049-Arjun-84-2nd.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-85.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85\S22049-Arjun-85.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-85.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85\S22049-Arjun-85.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-86.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86\S22049-Arjun-86.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-86.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86\S22049-Arjun-86.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-87.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87\S22049-Arjun-87.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-87.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87\S22049-Arjun-87.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-88.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88\S22049-Arjun-88.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-88.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88\S22049-Arjun-88.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-89.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89\S22049-Arjun-89.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-89.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89\S22049-Arjun-89.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-9.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9\S22049-Arjun-9.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-9.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9\S22049-Arjun-9.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-90.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90\S22049-Arjun-90.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-90.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90\S22049-Arjun-90.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-91.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91\S22049-Arjun-91.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-91.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91\S22049-Arjun-91.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-92.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92\S22049-Arjun-92.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-92.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92\S22049-Arjun-92.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-93.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93\S22049-Arjun-93.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-93.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93\S22049-Arjun-93.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-94.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94\S22049-Arjun-94.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-94.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94\S22049-Arjun-94.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-95.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95\S22049-Arjun-95.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-95.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95\S22049-Arjun-95.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-96.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96\S22049-Arjun-96.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-96.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96\S22049-Arjun-96.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-97.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97\S22049-Arjun-97.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-97.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97\S22049-Arjun-97.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-98.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98\S22049-Arjun-98.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-98.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98\S22049-Arjun-98.pin MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-99.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99\S22049-Arjun-99.pepXML MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-99.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99\S22049-Arjun-99.pin MSBooster [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\jre\bin\java.exe -Xmx30G -cp "D:\JAM\fragpipe\tools\msbooster-1.1.11.jar;D:\JAM\fragpipe\tools\batmass-io-1.28.9.jar" Features.MainClass --paramsList D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\msbooster_params.txt Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-21_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-21_percolator_decoy_psms.tsv S22049-Arjun-21_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-120_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-120_percolator_decoy_psms.tsv S22049-Arjun-120_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-34_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-34_percolator_decoy_psms.tsv S22049-Arjun-34_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-75_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-75_percolator_decoy_psms.tsv S22049-Arjun-75_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-116_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-116_percolator_decoy_psms.tsv S22049-Arjun-116_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-47_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-47_percolator_decoy_psms.tsv S22049-Arjun-47_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-90_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-90_percolator_decoy_psms.tsv S22049-Arjun-90_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-135_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-135_percolator_decoy_psms.tsv S22049-Arjun-135_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-131_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-131_percolator_decoy_psms.tsv S22049-Arjun-131_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-108_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-108_percolator_decoy_psms.tsv S22049-Arjun-108_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-66-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-66-2nd_percolator_decoy_psms.tsv S22049-Arjun-66-2nd_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-127_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-127_percolator_decoy_psms.tsv S22049-Arjun-127_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-58-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-58-2nd_percolator_decoy_psms.tsv S22049-Arjun-58-2nd_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-53_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-53_percolator_decoy_psms.tsv S22049-Arjun-53_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-7_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-7_percolator_decoy_psms.tsv S22049-Arjun-7_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-101_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-101_percolator_decoy_psms.tsv S22049-Arjun-101_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-56_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-56_percolator_decoy_psms.tsv S22049-Arjun-56_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-119_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-119_percolator_decoy_psms.tsv S22049-Arjun-119_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-29_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-29_percolator_decoy_psms.tsv S22049-Arjun-29_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-143_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-143_percolator_decoy_psms.tsv S22049-Arjun-143_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-43_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-43_percolator_decoy_psms.tsv S22049-Arjun-43_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-12_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-12_percolator_decoy_psms.tsv S22049-Arjun-12_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-97_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-97_percolator_decoy_psms.tsv S22049-Arjun-97_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-16_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-16_percolator_decoy_psms.tsv S22049-Arjun-16_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-93_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-93_percolator_decoy_psms.tsv S22049-Arjun-93_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-71_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-71_percolator_decoy_psms.tsv S22049-Arjun-71_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-25_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-25_percolator_decoy_psms.tsv S22049-Arjun-25_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-104_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-104_percolator_decoy_psms.tsv S22049-Arjun-104_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-30_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-30_percolator_decoy_psms.tsv S22049-Arjun-30_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-65-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-65-2nd_percolator_decoy_psms.tsv S22049-Arjun-65-2nd_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-79_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-79_percolator_decoy_psms.tsv S22049-Arjun-79_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-38_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-38_percolator_decoy_psms.tsv S22049-Arjun-38_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-88_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-88_percolator_decoy_psms.tsv S22049-Arjun-88_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-142_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-142_percolator_decoy_psms.tsv S22049-Arjun-142_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-80_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-80_percolator_decoy_psms.tsv S22049-Arjun-80_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-105_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-105_percolator_decoy_psms.tsv S22049-Arjun-105_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-1_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-1_percolator_decoy_psms.tsv S22049-Arjun-1_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-22_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-22_percolator_decoy_psms.tsv S22049-Arjun-22_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-89_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-89_percolator_decoy_psms.tsv S22049-Arjun-89_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-37_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-37_percolator_decoy_psms.tsv S22049-Arjun-37_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-134_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-134_percolator_decoy_psms.tsv S22049-Arjun-134_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-74_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-74_percolator_decoy_psms.tsv S22049-Arjun-74_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-48_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-48_percolator_decoy_psms.tsv S22049-Arjun-48_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-121_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-121_percolator_decoy_psms.tsv S22049-Arjun-121_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-6_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-6_percolator_decoy_psms.tsv S22049-Arjun-6_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-140_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-140_percolator_decoy_psms.tsv S22049-Arjun-140_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-11_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-11_percolator_decoy_psms.tsv S22049-Arjun-11_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-84-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-84-2nd_percolator_decoy_psms.tsv S22049-Arjun-84-2nd_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-132_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-132_percolator_decoy_psms.tsv S22049-Arjun-132_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-52_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-52_percolator_decoy_psms.tsv S22049-Arjun-52_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-15_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-15_percolator_decoy_psms.tsv S22049-Arjun-15_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-81_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-81_percolator_decoy_psms.tsv S22049-Arjun-81_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-138_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-138_percolator_decoy_psms.tsv S22049-Arjun-138_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-125_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-125_percolator_decoy_psms.tsv S22049-Arjun-125_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-67_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-67_percolator_decoy_psms.tsv S22049-Arjun-67_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-44_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-44_percolator_decoy_psms.tsv S22049-Arjun-44_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-4_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-4_percolator_decoy_psms.tsv S22049-Arjun-4_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-112_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-112_percolator_decoy_psms.tsv S22049-Arjun-112_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-40_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-40_percolator_decoy_psms.tsv S22049-Arjun-40_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-19_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-19_percolator_decoy_psms.tsv S22049-Arjun-19_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-96_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-96_percolator_decoy_psms.tsv S22049-Arjun-96_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-92_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-92_percolator_decoy_psms.tsv S22049-Arjun-92_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-85_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-85_percolator_decoy_psms.tsv S22049-Arjun-85_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-26_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-26_percolator_decoy_psms.tsv S22049-Arjun-26_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-136_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-136_percolator_decoy_psms.tsv S22049-Arjun-136_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-70_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-70_percolator_decoy_psms.tsv S22049-Arjun-70_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-123_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-123_percolator_decoy_psms.tsv S22049-Arjun-123_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-33_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-33_percolator_decoy_psms.tsv S22049-Arjun-33_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-78_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-78_percolator_decoy_psms.tsv S22049-Arjun-78_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-110_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-110_percolator_decoy_psms.tsv S22049-Arjun-110_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-49_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-49_percolator_decoy_psms.tsv S22049-Arjun-49_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-129_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-129_percolator_decoy_psms.tsv S22049-Arjun-129_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-77_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-77_percolator_decoy_psms.tsv S22049-Arjun-77_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-36_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-36_percolator_decoy_psms.tsv S22049-Arjun-36_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-103_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-103_percolator_decoy_psms.tsv S22049-Arjun-103_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-2_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-2_percolator_decoy_psms.tsv S22049-Arjun-2_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-51_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-51_percolator_decoy_psms.tsv S22049-Arjun-51_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-60-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-60-2nd_percolator_decoy_psms.tsv S22049-Arjun-60-2nd_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-10_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-10_percolator_decoy_psms.tsv S22049-Arjun-10_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-45_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-45_percolator_decoy_psms.tsv S22049-Arjun-45_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-114_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-114_percolator_decoy_psms.tsv S22049-Arjun-114_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-133_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-133_percolator_decoy_psms.tsv S22049-Arjun-133_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-55_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-55_percolator_decoy_psms.tsv S22049-Arjun-55_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-41_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-41_percolator_decoy_psms.tsv S22049-Arjun-41_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-106_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-106_percolator_decoy_psms.tsv S22049-Arjun-106_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-62-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-62-2nd_percolator_decoy_psms.tsv S22049-Arjun-62-2nd_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-130_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-130_percolator_decoy_psms.tsv S22049-Arjun-130_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-107_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-107_percolator_decoy_psms.tsv S22049-Arjun-107_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-68_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-68_percolator_decoy_psms.tsv S22049-Arjun-68_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-14_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-14_percolator_decoy_psms.tsv S22049-Arjun-14_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-144_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-144_percolator_decoy_psms.tsv S22049-Arjun-144_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-8_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-8_percolator_decoy_psms.tsv S22049-Arjun-8_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-99_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-99_percolator_decoy_psms.tsv S22049-Arjun-99_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-18_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-18_percolator_decoy_psms.tsv S22049-Arjun-18_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-95_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-95_percolator_decoy_psms.tsv S22049-Arjun-95_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-117_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-117_percolator_decoy_psms.tsv S22049-Arjun-117_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-91_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-91_percolator_decoy_psms.tsv S22049-Arjun-91_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-86_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-86_percolator_decoy_psms.tsv S22049-Arjun-86_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-32_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-32_percolator_decoy_psms.tsv S22049-Arjun-32_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-141_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-141_percolator_decoy_psms.tsv S22049-Arjun-141_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-73_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-73_percolator_decoy_psms.tsv S22049-Arjun-73_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-23_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-23_percolator_decoy_psms.tsv S22049-Arjun-23_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-118_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-118_percolator_decoy_psms.tsv S22049-Arjun-118_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-61-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-61-2nd_percolator_decoy_psms.tsv S22049-Arjun-61-2nd_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-9_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-9_percolator_decoy_psms.tsv S22049-Arjun-9_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-27_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-27_percolator_decoy_psms.tsv S22049-Arjun-27_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-82_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-82_percolator_decoy_psms.tsv S22049-Arjun-82_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-63-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-63-2nd_percolator_decoy_psms.tsv S22049-Arjun-63-2nd_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-115_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-115_percolator_decoy_psms.tsv S22049-Arjun-115_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-20_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-20_percolator_decoy_psms.tsv S22049-Arjun-20_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-76_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-76_percolator_decoy_psms.tsv S22049-Arjun-76_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-102_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-102_percolator_decoy_psms.tsv S22049-Arjun-102_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-35_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-35_percolator_decoy_psms.tsv S22049-Arjun-35_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-113_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-113_percolator_decoy_psms.tsv S22049-Arjun-113_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-46_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-46_percolator_decoy_psms.tsv S22049-Arjun-46_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-100_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-100_percolator_decoy_psms.tsv S22049-Arjun-100_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-109_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-109_percolator_decoy_psms.tsv S22049-Arjun-109_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-3_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-3_percolator_decoy_psms.tsv S22049-Arjun-3_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-50_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-50_percolator_decoy_psms.tsv S22049-Arjun-50_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-57_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-57_percolator_decoy_psms.tsv S22049-Arjun-57_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-128_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-128_percolator_decoy_psms.tsv S22049-Arjun-128_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-54_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-54_percolator_decoy_psms.tsv S22049-Arjun-54_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-111_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-111_percolator_decoy_psms.tsv S22049-Arjun-111_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-64-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-64-2nd_percolator_decoy_psms.tsv S22049-Arjun-64-2nd_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-13_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-13_percolator_decoy_psms.tsv S22049-Arjun-13_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-98_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-98_percolator_decoy_psms.tsv S22049-Arjun-98_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-139_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-139_percolator_decoy_psms.tsv S22049-Arjun-139_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-42_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-42_percolator_decoy_psms.tsv S22049-Arjun-42_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-69_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-69_percolator_decoy_psms.tsv S22049-Arjun-69_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-126_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-126_percolator_decoy_psms.tsv S22049-Arjun-126_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-17_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-17_percolator_decoy_psms.tsv S22049-Arjun-17_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-94_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-94_percolator_decoy_psms.tsv S22049-Arjun-94_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-59-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-59-2nd_percolator_decoy_psms.tsv S22049-Arjun-59-2nd_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-31_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-31_percolator_decoy_psms.tsv S22049-Arjun-31_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-122_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-122_percolator_decoy_psms.tsv S22049-Arjun-122_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-24_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-24_percolator_decoy_psms.tsv S22049-Arjun-24_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-72_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-72_percolator_decoy_psms.tsv S22049-Arjun-72_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-39_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-39_percolator_decoy_psms.tsv S22049-Arjun-39_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-28_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-28_percolator_decoy_psms.tsv S22049-Arjun-28_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-87_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-87_percolator_decoy_psms.tsv S22049-Arjun-87_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-83_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-83_percolator_decoy_psms.tsv S22049-Arjun-83_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-137_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-137_percolator_decoy_psms.tsv S22049-Arjun-137_edited.pin Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-5_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-5_percolator_decoy_psms.tsv S22049-Arjun-5_edited.pin Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-21.pin S22049-Arjun-21 S22049-Arjun-21_percolator_target_psms.tsv S22049-Arjun-21_percolator_decoy_psms.tsv interact-S22049-Arjun-21 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21\S22049-Arjun-21_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21\S22049-Arjun-21_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-120.pin S22049-Arjun-120 S22049-Arjun-120_percolator_target_psms.tsv S22049-Arjun-120_percolator_decoy_psms.tsv interact-S22049-Arjun-120 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120\S22049-Arjun-120_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120\S22049-Arjun-120_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-34.pin S22049-Arjun-34 S22049-Arjun-34_percolator_target_psms.tsv S22049-Arjun-34_percolator_decoy_psms.tsv interact-S22049-Arjun-34 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34\S22049-Arjun-34_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34\S22049-Arjun-34_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-75.pin S22049-Arjun-75 S22049-Arjun-75_percolator_target_psms.tsv S22049-Arjun-75_percolator_decoy_psms.tsv interact-S22049-Arjun-75 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75\S22049-Arjun-75_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75\S22049-Arjun-75_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-116.pin S22049-Arjun-116 S22049-Arjun-116_percolator_target_psms.tsv S22049-Arjun-116_percolator_decoy_psms.tsv interact-S22049-Arjun-116 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116\S22049-Arjun-116_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116\S22049-Arjun-116_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-47.pin S22049-Arjun-47 S22049-Arjun-47_percolator_target_psms.tsv S22049-Arjun-47_percolator_decoy_psms.tsv interact-S22049-Arjun-47 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47\S22049-Arjun-47_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47\S22049-Arjun-47_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-90.pin S22049-Arjun-90 S22049-Arjun-90_percolator_target_psms.tsv S22049-Arjun-90_percolator_decoy_psms.tsv interact-S22049-Arjun-90 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90\S22049-Arjun-90_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90\S22049-Arjun-90_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-135.pin S22049-Arjun-135 S22049-Arjun-135_percolator_target_psms.tsv S22049-Arjun-135_percolator_decoy_psms.tsv interact-S22049-Arjun-135 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135\S22049-Arjun-135_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135\S22049-Arjun-135_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-131.pin S22049-Arjun-131 S22049-Arjun-131_percolator_target_psms.tsv S22049-Arjun-131_percolator_decoy_psms.tsv interact-S22049-Arjun-131 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131\S22049-Arjun-131_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131\S22049-Arjun-131_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-108.pin S22049-Arjun-108 S22049-Arjun-108_percolator_target_psms.tsv S22049-Arjun-108_percolator_decoy_psms.tsv interact-S22049-Arjun-108 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108\S22049-Arjun-108_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108\S22049-Arjun-108_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-66-2nd.pin S22049-Arjun-66-2nd S22049-Arjun-66-2nd_percolator_target_psms.tsv S22049-Arjun-66-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-66-2nd DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd\S22049-Arjun-66-2nd_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd\S22049-Arjun-66-2nd_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-127.pin S22049-Arjun-127 S22049-Arjun-127_percolator_target_psms.tsv S22049-Arjun-127_percolator_decoy_psms.tsv interact-S22049-Arjun-127 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127\S22049-Arjun-127_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127\S22049-Arjun-127_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-58-2nd.pin S22049-Arjun-58-2nd S22049-Arjun-58-2nd_percolator_target_psms.tsv S22049-Arjun-58-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-58-2nd DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd\S22049-Arjun-58-2nd_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd\S22049-Arjun-58-2nd_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-53.pin S22049-Arjun-53 S22049-Arjun-53_percolator_target_psms.tsv S22049-Arjun-53_percolator_decoy_psms.tsv interact-S22049-Arjun-53 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53\S22049-Arjun-53_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53\S22049-Arjun-53_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-7.pin S22049-Arjun-7 S22049-Arjun-7_percolator_target_psms.tsv S22049-Arjun-7_percolator_decoy_psms.tsv interact-S22049-Arjun-7 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7\S22049-Arjun-7_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7\S22049-Arjun-7_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-101.pin S22049-Arjun-101 S22049-Arjun-101_percolator_target_psms.tsv S22049-Arjun-101_percolator_decoy_psms.tsv interact-S22049-Arjun-101 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101\S22049-Arjun-101_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101\S22049-Arjun-101_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-56.pin S22049-Arjun-56 S22049-Arjun-56_percolator_target_psms.tsv S22049-Arjun-56_percolator_decoy_psms.tsv interact-S22049-Arjun-56 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56\S22049-Arjun-56_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56\S22049-Arjun-56_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-119.pin S22049-Arjun-119 S22049-Arjun-119_percolator_target_psms.tsv S22049-Arjun-119_percolator_decoy_psms.tsv interact-S22049-Arjun-119 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119\S22049-Arjun-119_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119\S22049-Arjun-119_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-29.pin S22049-Arjun-29 S22049-Arjun-29_percolator_target_psms.tsv S22049-Arjun-29_percolator_decoy_psms.tsv interact-S22049-Arjun-29 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29\S22049-Arjun-29_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29\S22049-Arjun-29_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-143.pin S22049-Arjun-143 S22049-Arjun-143_percolator_target_psms.tsv S22049-Arjun-143_percolator_decoy_psms.tsv interact-S22049-Arjun-143 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143\S22049-Arjun-143_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143\S22049-Arjun-143_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-43.pin S22049-Arjun-43 S22049-Arjun-43_percolator_target_psms.tsv S22049-Arjun-43_percolator_decoy_psms.tsv interact-S22049-Arjun-43 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43\S22049-Arjun-43_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43\S22049-Arjun-43_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-12.pin S22049-Arjun-12 S22049-Arjun-12_percolator_target_psms.tsv S22049-Arjun-12_percolator_decoy_psms.tsv interact-S22049-Arjun-12 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12\S22049-Arjun-12_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12\S22049-Arjun-12_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-97.pin S22049-Arjun-97 S22049-Arjun-97_percolator_target_psms.tsv S22049-Arjun-97_percolator_decoy_psms.tsv interact-S22049-Arjun-97 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97\S22049-Arjun-97_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97\S22049-Arjun-97_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-16.pin S22049-Arjun-16 S22049-Arjun-16_percolator_target_psms.tsv S22049-Arjun-16_percolator_decoy_psms.tsv interact-S22049-Arjun-16 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16\S22049-Arjun-16_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16\S22049-Arjun-16_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-93.pin S22049-Arjun-93 S22049-Arjun-93_percolator_target_psms.tsv S22049-Arjun-93_percolator_decoy_psms.tsv interact-S22049-Arjun-93 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93\S22049-Arjun-93_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93\S22049-Arjun-93_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-71.pin S22049-Arjun-71 S22049-Arjun-71_percolator_target_psms.tsv S22049-Arjun-71_percolator_decoy_psms.tsv interact-S22049-Arjun-71 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71\S22049-Arjun-71_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71\S22049-Arjun-71_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-25.pin S22049-Arjun-25 S22049-Arjun-25_percolator_target_psms.tsv S22049-Arjun-25_percolator_decoy_psms.tsv interact-S22049-Arjun-25 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25\S22049-Arjun-25_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25\S22049-Arjun-25_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-104.pin S22049-Arjun-104 S22049-Arjun-104_percolator_target_psms.tsv S22049-Arjun-104_percolator_decoy_psms.tsv interact-S22049-Arjun-104 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104\S22049-Arjun-104_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104\S22049-Arjun-104_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-30.pin S22049-Arjun-30 S22049-Arjun-30_percolator_target_psms.tsv S22049-Arjun-30_percolator_decoy_psms.tsv interact-S22049-Arjun-30 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30\S22049-Arjun-30_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30\S22049-Arjun-30_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-65-2nd.pin S22049-Arjun-65-2nd S22049-Arjun-65-2nd_percolator_target_psms.tsv S22049-Arjun-65-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-65-2nd DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd\S22049-Arjun-65-2nd_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd\S22049-Arjun-65-2nd_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-79.pin S22049-Arjun-79 S22049-Arjun-79_percolator_target_psms.tsv S22049-Arjun-79_percolator_decoy_psms.tsv interact-S22049-Arjun-79 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79\S22049-Arjun-79_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79\S22049-Arjun-79_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-38.pin S22049-Arjun-38 S22049-Arjun-38_percolator_target_psms.tsv S22049-Arjun-38_percolator_decoy_psms.tsv interact-S22049-Arjun-38 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38\S22049-Arjun-38_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38\S22049-Arjun-38_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-88.pin S22049-Arjun-88 S22049-Arjun-88_percolator_target_psms.tsv S22049-Arjun-88_percolator_decoy_psms.tsv interact-S22049-Arjun-88 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88\S22049-Arjun-88_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88\S22049-Arjun-88_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-142.pin S22049-Arjun-142 S22049-Arjun-142_percolator_target_psms.tsv S22049-Arjun-142_percolator_decoy_psms.tsv interact-S22049-Arjun-142 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142\S22049-Arjun-142_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142\S22049-Arjun-142_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-80.pin S22049-Arjun-80 S22049-Arjun-80_percolator_target_psms.tsv S22049-Arjun-80_percolator_decoy_psms.tsv interact-S22049-Arjun-80 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80\S22049-Arjun-80_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80\S22049-Arjun-80_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-105.pin S22049-Arjun-105 S22049-Arjun-105_percolator_target_psms.tsv S22049-Arjun-105_percolator_decoy_psms.tsv interact-S22049-Arjun-105 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105\S22049-Arjun-105_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105\S22049-Arjun-105_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-1.pin S22049-Arjun-1 S22049-Arjun-1_percolator_target_psms.tsv S22049-Arjun-1_percolator_decoy_psms.tsv interact-S22049-Arjun-1 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\S22049-Arjun-1_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\S22049-Arjun-1_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-22.pin S22049-Arjun-22 S22049-Arjun-22_percolator_target_psms.tsv S22049-Arjun-22_percolator_decoy_psms.tsv interact-S22049-Arjun-22 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22\S22049-Arjun-22_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22\S22049-Arjun-22_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-89.pin S22049-Arjun-89 S22049-Arjun-89_percolator_target_psms.tsv S22049-Arjun-89_percolator_decoy_psms.tsv interact-S22049-Arjun-89 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89\S22049-Arjun-89_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89\S22049-Arjun-89_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-37.pin S22049-Arjun-37 S22049-Arjun-37_percolator_target_psms.tsv S22049-Arjun-37_percolator_decoy_psms.tsv interact-S22049-Arjun-37 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37\S22049-Arjun-37_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37\S22049-Arjun-37_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-134.pin S22049-Arjun-134 S22049-Arjun-134_percolator_target_psms.tsv S22049-Arjun-134_percolator_decoy_psms.tsv interact-S22049-Arjun-134 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134\S22049-Arjun-134_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134\S22049-Arjun-134_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-74.pin S22049-Arjun-74 S22049-Arjun-74_percolator_target_psms.tsv S22049-Arjun-74_percolator_decoy_psms.tsv interact-S22049-Arjun-74 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74\S22049-Arjun-74_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74\S22049-Arjun-74_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-48.pin S22049-Arjun-48 S22049-Arjun-48_percolator_target_psms.tsv S22049-Arjun-48_percolator_decoy_psms.tsv interact-S22049-Arjun-48 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48\S22049-Arjun-48_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48\S22049-Arjun-48_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-121.pin S22049-Arjun-121 S22049-Arjun-121_percolator_target_psms.tsv S22049-Arjun-121_percolator_decoy_psms.tsv interact-S22049-Arjun-121 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121\S22049-Arjun-121_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121\S22049-Arjun-121_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-6.pin S22049-Arjun-6 S22049-Arjun-6_percolator_target_psms.tsv S22049-Arjun-6_percolator_decoy_psms.tsv interact-S22049-Arjun-6 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6\S22049-Arjun-6_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6\S22049-Arjun-6_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-140.pin S22049-Arjun-140 S22049-Arjun-140_percolator_target_psms.tsv S22049-Arjun-140_percolator_decoy_psms.tsv interact-S22049-Arjun-140 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140\S22049-Arjun-140_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140\S22049-Arjun-140_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-11.pin S22049-Arjun-11 S22049-Arjun-11_percolator_target_psms.tsv S22049-Arjun-11_percolator_decoy_psms.tsv interact-S22049-Arjun-11 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11\S22049-Arjun-11_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11\S22049-Arjun-11_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-84-2nd.pin S22049-Arjun-84-2nd S22049-Arjun-84-2nd_percolator_target_psms.tsv S22049-Arjun-84-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-84-2nd DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd\S22049-Arjun-84-2nd_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd\S22049-Arjun-84-2nd_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-132.pin S22049-Arjun-132 S22049-Arjun-132_percolator_target_psms.tsv S22049-Arjun-132_percolator_decoy_psms.tsv interact-S22049-Arjun-132 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132\S22049-Arjun-132_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132\S22049-Arjun-132_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-52.pin S22049-Arjun-52 S22049-Arjun-52_percolator_target_psms.tsv S22049-Arjun-52_percolator_decoy_psms.tsv interact-S22049-Arjun-52 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52\S22049-Arjun-52_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52\S22049-Arjun-52_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-15.pin S22049-Arjun-15 S22049-Arjun-15_percolator_target_psms.tsv S22049-Arjun-15_percolator_decoy_psms.tsv interact-S22049-Arjun-15 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15\S22049-Arjun-15_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15\S22049-Arjun-15_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-81.pin S22049-Arjun-81 S22049-Arjun-81_percolator_target_psms.tsv S22049-Arjun-81_percolator_decoy_psms.tsv interact-S22049-Arjun-81 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81\S22049-Arjun-81_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81\S22049-Arjun-81_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-138.pin S22049-Arjun-138 S22049-Arjun-138_percolator_target_psms.tsv S22049-Arjun-138_percolator_decoy_psms.tsv interact-S22049-Arjun-138 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138\S22049-Arjun-138_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138\S22049-Arjun-138_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-125.pin S22049-Arjun-125 S22049-Arjun-125_percolator_target_psms.tsv S22049-Arjun-125_percolator_decoy_psms.tsv interact-S22049-Arjun-125 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125\S22049-Arjun-125_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125\S22049-Arjun-125_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-67.pin S22049-Arjun-67 S22049-Arjun-67_percolator_target_psms.tsv S22049-Arjun-67_percolator_decoy_psms.tsv interact-S22049-Arjun-67 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67\S22049-Arjun-67_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67\S22049-Arjun-67_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-44.pin S22049-Arjun-44 S22049-Arjun-44_percolator_target_psms.tsv S22049-Arjun-44_percolator_decoy_psms.tsv interact-S22049-Arjun-44 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44\S22049-Arjun-44_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44\S22049-Arjun-44_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-4.pin S22049-Arjun-4 S22049-Arjun-4_percolator_target_psms.tsv S22049-Arjun-4_percolator_decoy_psms.tsv interact-S22049-Arjun-4 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4\S22049-Arjun-4_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4\S22049-Arjun-4_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-112.pin S22049-Arjun-112 S22049-Arjun-112_percolator_target_psms.tsv S22049-Arjun-112_percolator_decoy_psms.tsv interact-S22049-Arjun-112 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112\S22049-Arjun-112_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112\S22049-Arjun-112_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-40.pin S22049-Arjun-40 S22049-Arjun-40_percolator_target_psms.tsv S22049-Arjun-40_percolator_decoy_psms.tsv interact-S22049-Arjun-40 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40\S22049-Arjun-40_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40\S22049-Arjun-40_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-19.pin S22049-Arjun-19 S22049-Arjun-19_percolator_target_psms.tsv S22049-Arjun-19_percolator_decoy_psms.tsv interact-S22049-Arjun-19 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19\S22049-Arjun-19_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19\S22049-Arjun-19_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-96.pin S22049-Arjun-96 S22049-Arjun-96_percolator_target_psms.tsv S22049-Arjun-96_percolator_decoy_psms.tsv interact-S22049-Arjun-96 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96\S22049-Arjun-96_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96\S22049-Arjun-96_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-92.pin S22049-Arjun-92 S22049-Arjun-92_percolator_target_psms.tsv S22049-Arjun-92_percolator_decoy_psms.tsv interact-S22049-Arjun-92 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92\S22049-Arjun-92_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92\S22049-Arjun-92_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-85.pin S22049-Arjun-85 S22049-Arjun-85_percolator_target_psms.tsv S22049-Arjun-85_percolator_decoy_psms.tsv interact-S22049-Arjun-85 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85\S22049-Arjun-85_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85\S22049-Arjun-85_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-26.pin S22049-Arjun-26 S22049-Arjun-26_percolator_target_psms.tsv S22049-Arjun-26_percolator_decoy_psms.tsv interact-S22049-Arjun-26 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26\S22049-Arjun-26_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26\S22049-Arjun-26_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-136.pin S22049-Arjun-136 S22049-Arjun-136_percolator_target_psms.tsv S22049-Arjun-136_percolator_decoy_psms.tsv interact-S22049-Arjun-136 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136\S22049-Arjun-136_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136\S22049-Arjun-136_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-70.pin S22049-Arjun-70 S22049-Arjun-70_percolator_target_psms.tsv S22049-Arjun-70_percolator_decoy_psms.tsv interact-S22049-Arjun-70 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70\S22049-Arjun-70_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70\S22049-Arjun-70_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-123.pin S22049-Arjun-123 S22049-Arjun-123_percolator_target_psms.tsv S22049-Arjun-123_percolator_decoy_psms.tsv interact-S22049-Arjun-123 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\S22049-Arjun-123_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\S22049-Arjun-123_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-33.pin S22049-Arjun-33 S22049-Arjun-33_percolator_target_psms.tsv S22049-Arjun-33_percolator_decoy_psms.tsv interact-S22049-Arjun-33 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33\S22049-Arjun-33_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33\S22049-Arjun-33_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-78.pin S22049-Arjun-78 S22049-Arjun-78_percolator_target_psms.tsv S22049-Arjun-78_percolator_decoy_psms.tsv interact-S22049-Arjun-78 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78\S22049-Arjun-78_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78\S22049-Arjun-78_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-110.pin S22049-Arjun-110 S22049-Arjun-110_percolator_target_psms.tsv S22049-Arjun-110_percolator_decoy_psms.tsv interact-S22049-Arjun-110 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110\S22049-Arjun-110_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110\S22049-Arjun-110_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-49.pin S22049-Arjun-49 S22049-Arjun-49_percolator_target_psms.tsv S22049-Arjun-49_percolator_decoy_psms.tsv interact-S22049-Arjun-49 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49\S22049-Arjun-49_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49\S22049-Arjun-49_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-129.pin S22049-Arjun-129 S22049-Arjun-129_percolator_target_psms.tsv S22049-Arjun-129_percolator_decoy_psms.tsv interact-S22049-Arjun-129 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129\S22049-Arjun-129_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129\S22049-Arjun-129_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-77.pin S22049-Arjun-77 S22049-Arjun-77_percolator_target_psms.tsv S22049-Arjun-77_percolator_decoy_psms.tsv interact-S22049-Arjun-77 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77\S22049-Arjun-77_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77\S22049-Arjun-77_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-36.pin S22049-Arjun-36 S22049-Arjun-36_percolator_target_psms.tsv S22049-Arjun-36_percolator_decoy_psms.tsv interact-S22049-Arjun-36 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36\S22049-Arjun-36_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36\S22049-Arjun-36_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-103.pin S22049-Arjun-103 S22049-Arjun-103_percolator_target_psms.tsv S22049-Arjun-103_percolator_decoy_psms.tsv interact-S22049-Arjun-103 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103\S22049-Arjun-103_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103\S22049-Arjun-103_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-2.pin S22049-Arjun-2 S22049-Arjun-2_percolator_target_psms.tsv S22049-Arjun-2_percolator_decoy_psms.tsv interact-S22049-Arjun-2 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2\S22049-Arjun-2_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2\S22049-Arjun-2_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-51.pin S22049-Arjun-51 S22049-Arjun-51_percolator_target_psms.tsv S22049-Arjun-51_percolator_decoy_psms.tsv interact-S22049-Arjun-51 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51\S22049-Arjun-51_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51\S22049-Arjun-51_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-60-2nd.pin S22049-Arjun-60-2nd S22049-Arjun-60-2nd_percolator_target_psms.tsv S22049-Arjun-60-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-60-2nd DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd\S22049-Arjun-60-2nd_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd\S22049-Arjun-60-2nd_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-10.pin S22049-Arjun-10 S22049-Arjun-10_percolator_target_psms.tsv S22049-Arjun-10_percolator_decoy_psms.tsv interact-S22049-Arjun-10 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10\S22049-Arjun-10_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10\S22049-Arjun-10_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-45.pin S22049-Arjun-45 S22049-Arjun-45_percolator_target_psms.tsv S22049-Arjun-45_percolator_decoy_psms.tsv interact-S22049-Arjun-45 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45\S22049-Arjun-45_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45\S22049-Arjun-45_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-114.pin S22049-Arjun-114 S22049-Arjun-114_percolator_target_psms.tsv S22049-Arjun-114_percolator_decoy_psms.tsv interact-S22049-Arjun-114 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114\S22049-Arjun-114_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114\S22049-Arjun-114_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-133.pin S22049-Arjun-133 S22049-Arjun-133_percolator_target_psms.tsv S22049-Arjun-133_percolator_decoy_psms.tsv interact-S22049-Arjun-133 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133\S22049-Arjun-133_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133\S22049-Arjun-133_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-55.pin S22049-Arjun-55 S22049-Arjun-55_percolator_target_psms.tsv S22049-Arjun-55_percolator_decoy_psms.tsv interact-S22049-Arjun-55 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55\S22049-Arjun-55_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55\S22049-Arjun-55_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-41.pin S22049-Arjun-41 S22049-Arjun-41_percolator_target_psms.tsv S22049-Arjun-41_percolator_decoy_psms.tsv interact-S22049-Arjun-41 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41\S22049-Arjun-41_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41\S22049-Arjun-41_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-106.pin S22049-Arjun-106 S22049-Arjun-106_percolator_target_psms.tsv S22049-Arjun-106_percolator_decoy_psms.tsv interact-S22049-Arjun-106 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106\S22049-Arjun-106_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106\S22049-Arjun-106_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-62-2nd.pin S22049-Arjun-62-2nd S22049-Arjun-62-2nd_percolator_target_psms.tsv S22049-Arjun-62-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-62-2nd DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd\S22049-Arjun-62-2nd_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd\S22049-Arjun-62-2nd_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-130.pin S22049-Arjun-130 S22049-Arjun-130_percolator_target_psms.tsv S22049-Arjun-130_percolator_decoy_psms.tsv interact-S22049-Arjun-130 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130\S22049-Arjun-130_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130\S22049-Arjun-130_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-107.pin S22049-Arjun-107 S22049-Arjun-107_percolator_target_psms.tsv S22049-Arjun-107_percolator_decoy_psms.tsv interact-S22049-Arjun-107 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107\S22049-Arjun-107_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107\S22049-Arjun-107_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-68.pin S22049-Arjun-68 S22049-Arjun-68_percolator_target_psms.tsv S22049-Arjun-68_percolator_decoy_psms.tsv interact-S22049-Arjun-68 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68\S22049-Arjun-68_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68\S22049-Arjun-68_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-14.pin S22049-Arjun-14 S22049-Arjun-14_percolator_target_psms.tsv S22049-Arjun-14_percolator_decoy_psms.tsv interact-S22049-Arjun-14 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14\S22049-Arjun-14_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14\S22049-Arjun-14_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-144.pin S22049-Arjun-144 S22049-Arjun-144_percolator_target_psms.tsv S22049-Arjun-144_percolator_decoy_psms.tsv interact-S22049-Arjun-144 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144\S22049-Arjun-144_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144\S22049-Arjun-144_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-8.pin S22049-Arjun-8 S22049-Arjun-8_percolator_target_psms.tsv S22049-Arjun-8_percolator_decoy_psms.tsv interact-S22049-Arjun-8 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8\S22049-Arjun-8_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8\S22049-Arjun-8_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-99.pin S22049-Arjun-99 S22049-Arjun-99_percolator_target_psms.tsv S22049-Arjun-99_percolator_decoy_psms.tsv interact-S22049-Arjun-99 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99\S22049-Arjun-99_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99\S22049-Arjun-99_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-18.pin S22049-Arjun-18 S22049-Arjun-18_percolator_target_psms.tsv S22049-Arjun-18_percolator_decoy_psms.tsv interact-S22049-Arjun-18 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18\S22049-Arjun-18_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18\S22049-Arjun-18_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-95.pin S22049-Arjun-95 S22049-Arjun-95_percolator_target_psms.tsv S22049-Arjun-95_percolator_decoy_psms.tsv interact-S22049-Arjun-95 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95\S22049-Arjun-95_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95\S22049-Arjun-95_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-117.pin S22049-Arjun-117 S22049-Arjun-117_percolator_target_psms.tsv S22049-Arjun-117_percolator_decoy_psms.tsv interact-S22049-Arjun-117 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117\S22049-Arjun-117_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117\S22049-Arjun-117_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-91.pin S22049-Arjun-91 S22049-Arjun-91_percolator_target_psms.tsv S22049-Arjun-91_percolator_decoy_psms.tsv interact-S22049-Arjun-91 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91\S22049-Arjun-91_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91\S22049-Arjun-91_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-86.pin S22049-Arjun-86 S22049-Arjun-86_percolator_target_psms.tsv S22049-Arjun-86_percolator_decoy_psms.tsv interact-S22049-Arjun-86 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86\S22049-Arjun-86_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86\S22049-Arjun-86_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-32.pin S22049-Arjun-32 S22049-Arjun-32_percolator_target_psms.tsv S22049-Arjun-32_percolator_decoy_psms.tsv interact-S22049-Arjun-32 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32\S22049-Arjun-32_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32\S22049-Arjun-32_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-141.pin S22049-Arjun-141 S22049-Arjun-141_percolator_target_psms.tsv S22049-Arjun-141_percolator_decoy_psms.tsv interact-S22049-Arjun-141 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141\S22049-Arjun-141_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141\S22049-Arjun-141_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-73.pin S22049-Arjun-73 S22049-Arjun-73_percolator_target_psms.tsv S22049-Arjun-73_percolator_decoy_psms.tsv interact-S22049-Arjun-73 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73\S22049-Arjun-73_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73\S22049-Arjun-73_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-23.pin S22049-Arjun-23 S22049-Arjun-23_percolator_target_psms.tsv S22049-Arjun-23_percolator_decoy_psms.tsv interact-S22049-Arjun-23 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23\S22049-Arjun-23_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23\S22049-Arjun-23_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-118.pin S22049-Arjun-118 S22049-Arjun-118_percolator_target_psms.tsv S22049-Arjun-118_percolator_decoy_psms.tsv interact-S22049-Arjun-118 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118\S22049-Arjun-118_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118\S22049-Arjun-118_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-61-2nd.pin S22049-Arjun-61-2nd S22049-Arjun-61-2nd_percolator_target_psms.tsv S22049-Arjun-61-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-61-2nd DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd\S22049-Arjun-61-2nd_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd\S22049-Arjun-61-2nd_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-9.pin S22049-Arjun-9 S22049-Arjun-9_percolator_target_psms.tsv S22049-Arjun-9_percolator_decoy_psms.tsv interact-S22049-Arjun-9 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9\S22049-Arjun-9_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9\S22049-Arjun-9_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-27.pin S22049-Arjun-27 S22049-Arjun-27_percolator_target_psms.tsv S22049-Arjun-27_percolator_decoy_psms.tsv interact-S22049-Arjun-27 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27\S22049-Arjun-27_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27\S22049-Arjun-27_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-82.pin S22049-Arjun-82 S22049-Arjun-82_percolator_target_psms.tsv S22049-Arjun-82_percolator_decoy_psms.tsv interact-S22049-Arjun-82 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82\S22049-Arjun-82_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82\S22049-Arjun-82_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-63-2nd.pin S22049-Arjun-63-2nd S22049-Arjun-63-2nd_percolator_target_psms.tsv S22049-Arjun-63-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-63-2nd DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd\S22049-Arjun-63-2nd_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd\S22049-Arjun-63-2nd_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-115.pin S22049-Arjun-115 S22049-Arjun-115_percolator_target_psms.tsv S22049-Arjun-115_percolator_decoy_psms.tsv interact-S22049-Arjun-115 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115\S22049-Arjun-115_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115\S22049-Arjun-115_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-20.pin S22049-Arjun-20 S22049-Arjun-20_percolator_target_psms.tsv S22049-Arjun-20_percolator_decoy_psms.tsv interact-S22049-Arjun-20 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20\S22049-Arjun-20_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20\S22049-Arjun-20_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-76.pin S22049-Arjun-76 S22049-Arjun-76_percolator_target_psms.tsv S22049-Arjun-76_percolator_decoy_psms.tsv interact-S22049-Arjun-76 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76\S22049-Arjun-76_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76\S22049-Arjun-76_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-102.pin S22049-Arjun-102 S22049-Arjun-102_percolator_target_psms.tsv S22049-Arjun-102_percolator_decoy_psms.tsv interact-S22049-Arjun-102 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102\S22049-Arjun-102_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102\S22049-Arjun-102_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-35.pin S22049-Arjun-35 S22049-Arjun-35_percolator_target_psms.tsv S22049-Arjun-35_percolator_decoy_psms.tsv interact-S22049-Arjun-35 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35\S22049-Arjun-35_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35\S22049-Arjun-35_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-113.pin S22049-Arjun-113 S22049-Arjun-113_percolator_target_psms.tsv S22049-Arjun-113_percolator_decoy_psms.tsv interact-S22049-Arjun-113 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113\S22049-Arjun-113_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113\S22049-Arjun-113_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-46.pin S22049-Arjun-46 S22049-Arjun-46_percolator_target_psms.tsv S22049-Arjun-46_percolator_decoy_psms.tsv interact-S22049-Arjun-46 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46\S22049-Arjun-46_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46\S22049-Arjun-46_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-100.pin S22049-Arjun-100 S22049-Arjun-100_percolator_target_psms.tsv S22049-Arjun-100_percolator_decoy_psms.tsv interact-S22049-Arjun-100 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100\S22049-Arjun-100_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100\S22049-Arjun-100_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-109.pin S22049-Arjun-109 S22049-Arjun-109_percolator_target_psms.tsv S22049-Arjun-109_percolator_decoy_psms.tsv interact-S22049-Arjun-109 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109\S22049-Arjun-109_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109\S22049-Arjun-109_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-3.pin S22049-Arjun-3 S22049-Arjun-3_percolator_target_psms.tsv S22049-Arjun-3_percolator_decoy_psms.tsv interact-S22049-Arjun-3 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3\S22049-Arjun-3_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3\S22049-Arjun-3_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-50.pin S22049-Arjun-50 S22049-Arjun-50_percolator_target_psms.tsv S22049-Arjun-50_percolator_decoy_psms.tsv interact-S22049-Arjun-50 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50\S22049-Arjun-50_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50\S22049-Arjun-50_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-57.pin S22049-Arjun-57 S22049-Arjun-57_percolator_target_psms.tsv S22049-Arjun-57_percolator_decoy_psms.tsv interact-S22049-Arjun-57 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57\S22049-Arjun-57_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57\S22049-Arjun-57_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-128.pin S22049-Arjun-128 S22049-Arjun-128_percolator_target_psms.tsv S22049-Arjun-128_percolator_decoy_psms.tsv interact-S22049-Arjun-128 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128\S22049-Arjun-128_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128\S22049-Arjun-128_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-54.pin S22049-Arjun-54 S22049-Arjun-54_percolator_target_psms.tsv S22049-Arjun-54_percolator_decoy_psms.tsv interact-S22049-Arjun-54 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54\S22049-Arjun-54_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54\S22049-Arjun-54_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-111.pin S22049-Arjun-111 S22049-Arjun-111_percolator_target_psms.tsv S22049-Arjun-111_percolator_decoy_psms.tsv interact-S22049-Arjun-111 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111\S22049-Arjun-111_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111\S22049-Arjun-111_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-64-2nd.pin S22049-Arjun-64-2nd S22049-Arjun-64-2nd_percolator_target_psms.tsv S22049-Arjun-64-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-64-2nd DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd\S22049-Arjun-64-2nd_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd\S22049-Arjun-64-2nd_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-13.pin S22049-Arjun-13 S22049-Arjun-13_percolator_target_psms.tsv S22049-Arjun-13_percolator_decoy_psms.tsv interact-S22049-Arjun-13 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13\S22049-Arjun-13_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13\S22049-Arjun-13_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-98.pin S22049-Arjun-98 S22049-Arjun-98_percolator_target_psms.tsv S22049-Arjun-98_percolator_decoy_psms.tsv interact-S22049-Arjun-98 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98\S22049-Arjun-98_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98\S22049-Arjun-98_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-139.pin S22049-Arjun-139 S22049-Arjun-139_percolator_target_psms.tsv S22049-Arjun-139_percolator_decoy_psms.tsv interact-S22049-Arjun-139 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139\S22049-Arjun-139_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139\S22049-Arjun-139_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-42.pin S22049-Arjun-42 S22049-Arjun-42_percolator_target_psms.tsv S22049-Arjun-42_percolator_decoy_psms.tsv interact-S22049-Arjun-42 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42\S22049-Arjun-42_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42\S22049-Arjun-42_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-69.pin S22049-Arjun-69 S22049-Arjun-69_percolator_target_psms.tsv S22049-Arjun-69_percolator_decoy_psms.tsv interact-S22049-Arjun-69 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69\S22049-Arjun-69_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69\S22049-Arjun-69_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-126.pin S22049-Arjun-126 S22049-Arjun-126_percolator_target_psms.tsv S22049-Arjun-126_percolator_decoy_psms.tsv interact-S22049-Arjun-126 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126\S22049-Arjun-126_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126\S22049-Arjun-126_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-17.pin S22049-Arjun-17 S22049-Arjun-17_percolator_target_psms.tsv S22049-Arjun-17_percolator_decoy_psms.tsv interact-S22049-Arjun-17 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17\S22049-Arjun-17_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17\S22049-Arjun-17_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-94.pin S22049-Arjun-94 S22049-Arjun-94_percolator_target_psms.tsv S22049-Arjun-94_percolator_decoy_psms.tsv interact-S22049-Arjun-94 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94\S22049-Arjun-94_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94\S22049-Arjun-94_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-59-2nd.pin S22049-Arjun-59-2nd S22049-Arjun-59-2nd_percolator_target_psms.tsv S22049-Arjun-59-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-59-2nd DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd\S22049-Arjun-59-2nd_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd\S22049-Arjun-59-2nd_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-31.pin S22049-Arjun-31 S22049-Arjun-31_percolator_target_psms.tsv S22049-Arjun-31_percolator_decoy_psms.tsv interact-S22049-Arjun-31 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31\S22049-Arjun-31_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31\S22049-Arjun-31_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-122.pin S22049-Arjun-122 S22049-Arjun-122_percolator_target_psms.tsv S22049-Arjun-122_percolator_decoy_psms.tsv interact-S22049-Arjun-122 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122\S22049-Arjun-122_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122\S22049-Arjun-122_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-24.pin S22049-Arjun-24 S22049-Arjun-24_percolator_target_psms.tsv S22049-Arjun-24_percolator_decoy_psms.tsv interact-S22049-Arjun-24 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24\S22049-Arjun-24_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24\S22049-Arjun-24_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-72.pin S22049-Arjun-72 S22049-Arjun-72_percolator_target_psms.tsv S22049-Arjun-72_percolator_decoy_psms.tsv interact-S22049-Arjun-72 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72\S22049-Arjun-72_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72\S22049-Arjun-72_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-39.pin S22049-Arjun-39 S22049-Arjun-39_percolator_target_psms.tsv S22049-Arjun-39_percolator_decoy_psms.tsv interact-S22049-Arjun-39 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39\S22049-Arjun-39_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39\S22049-Arjun-39_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-28.pin S22049-Arjun-28 S22049-Arjun-28_percolator_target_psms.tsv S22049-Arjun-28_percolator_decoy_psms.tsv interact-S22049-Arjun-28 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28\S22049-Arjun-28_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28\S22049-Arjun-28_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-87.pin S22049-Arjun-87 S22049-Arjun-87_percolator_target_psms.tsv S22049-Arjun-87_percolator_decoy_psms.tsv interact-S22049-Arjun-87 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87\S22049-Arjun-87_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87\S22049-Arjun-87_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-83.pin S22049-Arjun-83 S22049-Arjun-83_percolator_target_psms.tsv S22049-Arjun-83_percolator_decoy_psms.tsv interact-S22049-Arjun-83 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83\S22049-Arjun-83_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83\S22049-Arjun-83_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-137.pin S22049-Arjun-137 S22049-Arjun-137_percolator_target_psms.tsv S22049-Arjun-137_percolator_decoy_psms.tsv interact-S22049-Arjun-137 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137\S22049-Arjun-137_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137\S22049-Arjun-137_percolator_decoy_psms.tsv Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-5.pin S22049-Arjun-5 S22049-Arjun-5_percolator_target_psms.tsv S22049-Arjun-5_percolator_decoy_psms.tsv interact-S22049-Arjun-5 DDA 0.5 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5\S22049-Arjun-5_percolator_target_psms.tsv Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5\S22049-Arjun-5_percolator_decoy_psms.tsv ProteinProphet [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe proteinprophet --maxppmdiff 2000000 --output combined D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\filelist_proteinprophet.txt PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razor PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] 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D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck IonQuant [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\jre\bin\java.exe -Xmx30G -Dlibs.bruker.dir="D:\JAM\fragpipe\tools\MSFragger-3.7\ext\bruker" -Dlibs.thermo.dir="D:\JAM\fragpipe\tools\MSFragger-3.7\ext\thermo" -cp "D:\JAM\fragpipe\tools\jfreechart-1.5.3.jar;D:\JAM\fragpipe\tools\batmass-io-1.28.9.jar;D:\JAM\fragpipe\tools\IonQuant-1.8.10.jar" ionquant.IonQuant --threads 7 --ionmobility 0 --minexps 1 --mbr 0 --maxlfq 1 --requantify 1 --mztol 10 --imtol 0.05 --rttol 0.4 --mbrmincorr 0 --mbrrttol 1 --mbrimtol 0.05 --mbrtoprun 10 --ionfdr 0.01 --proteinfdr 1 --peptidefdr 1 --normalization 1 --minisotopes 2 --minscans 3 --writeindex 0 --tp 0 --minfreq 0 --minions 1 --locprob 0.75 --uniqueness 0 --multidir . --filelist D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\filelist_ionquant.txt --modlist D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\modmasses_ionquant.txt ~~~~~~~~~~~~~~~~~~~~~~ Execution order: Cmd: [START], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] Cmd: [CheckCentroid], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] Cmd: [WorkspaceCleanInit], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] Cmd: [MSFragger], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] Cmd: [MSBooster], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] Cmd: [Percolator], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] Cmd: [ProteinProphet], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] Cmd: [PhilosopherDbAnnotate], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] Cmd: [PhilosopherFilter], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] Cmd: [PhilosopherReport], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] Cmd: [WorkspaceClean], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] Cmd: [IonQuant], Work dir: [D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] ~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~Sample of D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas~~~~~~~ >rev_sp|A2RH74|DNAA_LACLM Chromosomal replication initiator protein DnaA OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=dnaA PE=3 SV=1 >rev_sp|A2RN94|SYD_LACLM Aspartate--tRNA ligase OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=aspS PE=3 SV=1 >rev_sp|Q9AEP7|CH60_LACLM Chaperonin GroEL OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=groEL PE=3 SV=1 >rev_tr|A2RHZ7|A2RHZ7_LACLM Anaerobic ribonucleoside-triphosphate reductase-activating protein OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=nrdG PE=3 SV=1 >rev_tr|A2RIW9|A2RIW9_LACLM ATP-dependent Clp protease ATP-binding subunit OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=clpC PE=3 SV=1 >rev_tr|A2RJS4|A2RJS4_LACLM Putative lysophospholipase OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=llmg_0935 PE=4 SV=1 >rev_tr|A2RKN8|A2RKN8_LACLM DUF2273 domain-containing protein OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=llmg_1259 PE=4 SV=1 >rev_tr|A2RLL9|A2RLL9_LACLM Carbohydrate-binding protein OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=llmg_1614 PE=4 SV=1 >rev_tr|A2RMH9|A2RMH9_LACLM Glutamine ABC transporter ATP-binding protein OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=glnQ PE=4 SV=1 >rev_tr|A2RND3|A2RND3_LACLM Phage protein OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=ps513 PE=4 SV=1 >rev_tr|Q9AQE3|Q9AQE3_LACLM RrD OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=rrD PE=4 SV=1 >sp|A2RN83|HSLO_LACLM 33 kDa chaperonin OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=hslO PE=3 SV=1 >sp|Q92764|KRT35_HUMAN Keratin, type I cuticular Ha5 OS=Homo sapiens OX=9606 GN=KRT35 PE=1 SV=5 >tr|A2RHZ6|A2RHZ6_LACLM Anaerobic ribonucleoside-triphosphate reductase OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=llmg_0281 PE=4 SV=1 >tr|A2RIW8|A2RIW8_LACLM Transcriptional regulator CtsR OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=ctsR PE=3 SV=1 >tr|A2RJS2|A2RJS2_LACLM RNA-binding protein KhpA OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=khpA PE=3 SV=1 >tr|A2RKN7|A2RKN7_LACLM Alkaline shock response membrane anchor protein AmaP OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=llmg_1258 PE=4 SV=1 >tr|A2RLL8|A2RLL8_LACLM Putative secreted protein OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=llmg_1613 PE=4 SV=1 >tr|A2RMH8|A2RMH8_LACLM Glutamine ABC transporter permease and substrate binding protein OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=glnP PE=3 SV=1 >tr|A2RND2|A2RND2_LACLM Hypothetical phage protein predicted by Glimmer/Critica OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=ps514 PE=4 SV=1 >tr|Q7BPI7|Q7BPI7_LACLM Sensor histidine kinase OS=Lactococcus lactis subsp. cremoris (strain MG1363) OX=416870 GN=kinD PE=4 SV=1 ~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ fragpipe.config ~~~~~~~~~ # FragPipe v19.1ui state cache # Please edit the following path to point to the correct location. # In Windows, please replace single '\' with '\\' database.db-path=D\:\\JAM\\Sylvain_fragpipe\\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas crystalc.run-crystalc=false database.decoy-tag=rev_ diann.fragpipe.cmd-opts= diann.library= diann.q-value=0.01 diann.quantification-strategy=3 diann.run-dia-nn=false diann.run-specific-protein-q-value=false diann.unrelated-runs=false diann.use-predicted-spectra=true diaumpire.AdjustFragIntensity=true diaumpire.BoostComplementaryIon=false diaumpire.CorrThreshold=0 diaumpire.DeltaApex=0.2 diaumpire.ExportPrecursorPeak=false diaumpire.Q1=true diaumpire.Q2=true diaumpire.Q3=true diaumpire.RFmax=500 diaumpire.RPmax=25 diaumpire.RTOverlap=0.3 diaumpire.SE.EstimateBG=false diaumpire.SE.IsoPattern=0.3 diaumpire.SE.MS1PPM=10 diaumpire.SE.MS2PPM=20 diaumpire.SE.MS2SN=1.1 diaumpire.SE.MassDefectFilter=true diaumpire.SE.MassDefectOffset=0.1 diaumpire.SE.NoMissedScan=1 diaumpire.SE.SN=1.1 diaumpire.run-diaumpire=false fragpipe-config.bin-ionquant=D\:\\JAM\\fragpipe\\tools\\IonQuant-1.8.10.jar fragpipe-config.bin-msfragger=D\:\\JAM\\fragpipe\\tools\\MSFragger-3.7\\MSFragger-3.7.jar fragpipe-config.bin-philosopher=D\:\\JAM\\fragpipe\\tools\\philosopher_v4.8.1_windows_amd64\\philosopher.exe fragpipe-config.bin-python= freequant.mz-tol=10 freequant.rt-tol=0.4 freequant.run-freequant=false ionquant.excludemods= ionquant.heavy= ionquant.imtol=0.05 ionquant.ionfdr=0.01 ionquant.light= ionquant.locprob=0.75 ionquant.maxlfq=1 ionquant.mbr=0 ionquant.mbrimtol=0.05 ionquant.mbrmincorr=0 ionquant.mbrrttol=1 ionquant.mbrtoprun=10 ionquant.medium= ionquant.minfreq=0 ionquant.minions=1 ionquant.minisotopes=2 ionquant.minscans=3 ionquant.mztol=10 ionquant.normalization=1 ionquant.peptidefdr=1 ionquant.proteinfdr=1 ionquant.requantify=1 ionquant.rttol=0.4 ionquant.run-ionquant=true ionquant.tp=0 ionquant.uniqueness=0 ionquant.use-labeling=false ionquant.use-lfq=true ionquant.writeindex=0 msbooster.predict-rt=true msbooster.predict-spectra=true msbooster.run-msbooster=true msbooster.use-correlated-features=false msfragger.Y_type_masses= msfragger.activation_types=all msfragger.add_topN_complementary=0 msfragger.allowed_missed_cleavage_1=2 msfragger.allowed_missed_cleavage_2=2 msfragger.calibrate_mass=2 msfragger.check_spectral_files=true msfragger.clip_nTerm_M=true msfragger.deisotope=1 msfragger.delta_mass_exclude_ranges=(-1.5,3.5) msfragger.deneutralloss=1 msfragger.diagnostic_fragments= msfragger.diagnostic_intensity_filter=0 msfragger.digest_max_length=50 msfragger.digest_min_length=7 msfragger.fragment_ion_series=b,y msfragger.fragment_mass_tolerance=20 msfragger.fragment_mass_units=1 msfragger.intensity_transform=0 msfragger.ion_series_definitions= msfragger.isotope_error=0/1/2 msfragger.labile_search_mode=off msfragger.localize_delta_mass=false msfragger.mass_diff_to_variable_mod=0 msfragger.mass_offsets=0 msfragger.max_fragment_charge=2 msfragger.max_variable_mods_combinations=5000 msfragger.max_variable_mods_per_peptide=3 msfragger.min_fragments_modelling=2 msfragger.min_matched_fragments=4 msfragger.min_sequence_matches=2 msfragger.minimum_peaks=15 msfragger.minimum_ratio=0.01 msfragger.misc.fragger.clear-mz-hi=0 msfragger.misc.fragger.clear-mz-lo=0 msfragger.misc.fragger.digest-mass-hi=5000 msfragger.misc.fragger.digest-mass-lo=500 msfragger.misc.fragger.enzyme-dropdown-1=stricttrypsin msfragger.misc.fragger.enzyme-dropdown-2=null msfragger.misc.fragger.precursor-charge-hi=4 msfragger.misc.fragger.precursor-charge-lo=1 msfragger.misc.fragger.remove-precursor-range-hi=1.5 msfragger.misc.fragger.remove-precursor-range-lo=-1.5 msfragger.misc.slice-db=1 msfragger.num_enzyme_termini=2 msfragger.output_format=pepXML_pin msfragger.output_max_expect=50 msfragger.output_report_topN=1 msfragger.override_charge=false msfragger.precursor_mass_lower=-20 msfragger.precursor_mass_mode=selected msfragger.precursor_mass_units=1 msfragger.precursor_mass_upper=20 msfragger.precursor_true_tolerance=20 msfragger.precursor_true_units=1 msfragger.remainder_fragment_masses= msfragger.remove_precursor_peak=1 msfragger.report_alternative_proteins=true msfragger.restrict_deltamass_to=all msfragger.run-msfragger=true msfragger.search_enzyme_cut_1=KR msfragger.search_enzyme_cut_2= msfragger.search_enzyme_name_1=stricttrypsin msfragger.search_enzyme_name_2=null msfragger.search_enzyme_nocut_1= msfragger.search_enzyme_nocut_2= msfragger.search_enzyme_sense_1=C msfragger.search_enzyme_sense_2=C msfragger.table.fix-mods=0.0,C-Term Peptide,true,-1; 0.0,N-Term Peptide,true,-1; 0.0,C-Term Protein,true,-1; 0.0,N-Term Protein,true,-1; 0.0,G (glycine),true,-1; 0.0,A (alanine),true,-1; 0.0,S (serine),true,-1; 0.0,P (proline),true,-1; 0.0,V (valine),true,-1; 0.0,T (threonine),true,-1; 57.02146,C (cysteine),true,-1; 0.0,L (leucine),true,-1; 0.0,I (isoleucine),true,-1; 0.0,N (asparagine),true,-1; 0.0,D (aspartic acid),true,-1; 0.0,Q (glutamine),true,-1; 0.0,K (lysine),true,-1; 0.0,E (glutamic acid),true,-1; 0.0,M (methionine),true,-1; 0.0,H (histidine),true,-1; 0.0,F (phenylalanine),true,-1; 0.0,R (arginine),true,-1; 0.0,Y (tyrosine),true,-1; 0.0,W (tryptophan),true,-1; 0.0,B ,true,-1; 0.0,J,true,-1; 0.0,O,true,-1; 0.0,U,true,-1; 0.0,X,true,-1; 0.0,Z,true,-1 msfragger.table.var-mods=15.9949,M,true,3; 42.0106,[^,true,1; 79.96633,STY,false,3; -17.0265,nQnC,false,1; -18.0106,nE,false,1; 4.025107,K,false,2; 6.020129,R,false,2; 8.014199,K,false,2; 10.008269,R,false,2; 0.0,site_10,false,1; 0.0,site_11,false,1; 0.0,site_12,false,1; 0.0,site_13,false,1; 0.0,site_14,false,1; 0.0,site_15,false,1; 0.0,site_16,false,1 msfragger.track_zero_topN=0 msfragger.use_all_mods_in_first_search=false msfragger.use_topN_peaks=150 msfragger.write_calibrated_mgf=false msfragger.write_calibrated_mzml=false msfragger.write_uncalibrated_mgf=false msfragger.zero_bin_accept_expect=0 msfragger.zero_bin_mult_expect=1 opair.activation1=HCD opair.activation2=ETD opair.glyco_db= opair.max_glycans=4 opair.max_isotope_error=2 opair.min_isotope_error=0 opair.ms1_tol=20 opair.ms2_tol=20 opair.reverse_scan_order=false opair.run-opair=false opair.single_scan_type=false peptide-prophet.cmd-opts=--decoyprobs --ppm --accmass --nonparam --expectscore peptide-prophet.combine-pepxml=false peptide-prophet.run-peptide-prophet=false percolator.cmd-opts=--only-psms --no-terminate --post-processing-tdc percolator.keep-tsv-files=false percolator.min-prob=0.5 percolator.run-percolator=true phi-report.dont-use-prot-proph-file=false phi-report.filter=--sequential --prot 0.05 phi-report.pep-level-summary=false phi-report.philosoher-msstats=false phi-report.print-decoys=false phi-report.prot-level-summary=false phi-report.remove-contaminants=false phi-report.run-report=true protein-prophet.cmd-opts=--maxppmdiff 2000000 protein-prophet.run-protein-prophet=true ptmprophet.cmdline=KEEPOLD STATIC EM\=1 NIONS\=b STY\:79.966331,M\:15.9949 MINPROB\=0.5 ptmprophet.run-ptmprophet=false ptmshepherd.adv_params=false ptmshepherd.annotation-common=false ptmshepherd.annotation-custom=false ptmshepherd.annotation-glyco=false ptmshepherd.annotation-unimod=true ptmshepherd.annotation_file= ptmshepherd.annotation_tol=0.01 ptmshepherd.cap_y_ions= ptmshepherd.decoy_type=1 ptmshepherd.diag_ions= ptmshepherd.diagextract_mode=false ptmshepherd.diagmine_diagMinFoldChange=3.0 ptmshepherd.diagmine_diagMinSpecDiff=00.2 ptmshepherd.diagmine_fragMinFoldChange=3.0 ptmshepherd.diagmine_fragMinPropensity=00.1 ptmshepherd.diagmine_fragMinSpecDiff=00.1 ptmshepherd.diagmine_minIons=25 ptmshepherd.diagmine_minIonsPerSpec=2 ptmshepherd.diagmine_minPeps=25 ptmshepherd.diagmine_mode=false ptmshepherd.diagmine_pepMinFoldChange=3.0 ptmshepherd.diagmine_pepMinSpecDiff=00.2 ptmshepherd.glyco_adducts= ptmshepherd.glyco_fdr=1.00 ptmshepherd.glyco_isotope_max=3 ptmshepherd.glyco_isotope_min=-1 ptmshepherd.glyco_mode=false ptmshepherd.glyco_ppm_tol=50 ptmshepherd.glycodatabase= ptmshepherd.histo_smoothbins=2 ptmshepherd.iontype_a=false ptmshepherd.iontype_b=true ptmshepherd.iontype_c=false ptmshepherd.iontype_x=false ptmshepherd.iontype_y=true ptmshepherd.iontype_z=false ptmshepherd.localization_allowed_res= ptmshepherd.localization_background=4 ptmshepherd.max_adducts=0 ptmshepherd.n_glyco=true ptmshepherd.normalization-psms=true ptmshepherd.normalization-scans=false ptmshepherd.output_extended=false ptmshepherd.peakpicking_mass_units=0 ptmshepherd.peakpicking_minPsm=10 ptmshepherd.peakpicking_promRatio=0.3 ptmshepherd.peakpicking_width=0.002 ptmshepherd.precursor_mass_units=0 ptmshepherd.precursor_tol=0.01 ptmshepherd.print_decoys=false ptmshepherd.prob_dhexOx=2,0.5,0.1 ptmshepherd.prob_dhexY=2,0.5 ptmshepherd.prob_neuacOx=2,0.05,0.2 ptmshepherd.prob_neugcOx=2,0.05,0.2 ptmshepherd.prob_phosphoOx=2,0.05,0.2 ptmshepherd.prob_regY=5,0.5 ptmshepherd.prob_sulfoOx=2,0.05,0.2 ptmshepherd.remainder_masses= ptmshepherd.remove_glycan_delta_mass=true ptmshepherd.run-shepherd=false ptmshepherd.spectra_maxfragcharge=2 ptmshepherd.spectra_ppmtol=20 ptmshepherd.varmod_masses= quantitation.run-label-free-quant=true run-psm-validation=true run-validation-tab=true saintexpress.fragpipe.cmd-opts= saintexpress.max-replicates=10 saintexpress.run-saint-express=false saintexpress.virtual-controls=100 speclibgen.easypqp.extras.max_delta_ppm=15 speclibgen.easypqp.extras.max_delta_unimod=0.02 speclibgen.easypqp.extras.rt_lowess_fraction=0 speclibgen.easypqp.fragment.a=false speclibgen.easypqp.fragment.b=true speclibgen.easypqp.fragment.c=false speclibgen.easypqp.fragment.x=false speclibgen.easypqp.fragment.y=true speclibgen.easypqp.fragment.z=false speclibgen.easypqp.im-cal=Automatic selection of a run as reference IM speclibgen.easypqp.neutral_loss=false speclibgen.easypqp.rt-cal=noiRT speclibgen.easypqp.select-file.text= speclibgen.easypqp.select-im-file.text= speclibgen.keep-intermediate-files=false speclibgen.run-speclibgen=false tab-run.delete_calibrated_mzml=false tab-run.delete_temp_files=false tmtintegrator.add_Ref=-1 tmtintegrator.aggregation_method=0 tmtintegrator.allow_overlabel=true tmtintegrator.allow_unlabeled=true tmtintegrator.best_psm=true tmtintegrator.channel_num=TMT-6 tmtintegrator.dont-run-fq-lq=false tmtintegrator.glyco_qval=-1 tmtintegrator.groupby=0 tmtintegrator.log2transformed=true tmtintegrator.max_pep_prob_thres=0 tmtintegrator.min_ntt=0 tmtintegrator.min_pep_prob=0.9 tmtintegrator.min_percent=0.05 tmtintegrator.min_purity=0.5 tmtintegrator.min_site_prob=-1 tmtintegrator.mod_tag=none tmtintegrator.ms1_int=true tmtintegrator.outlier_removal=true tmtintegrator.print_RefInt=false tmtintegrator.prot_exclude=none tmtintegrator.prot_norm=0 tmtintegrator.psm_norm=false tmtintegrator.quant_level=2 tmtintegrator.ref_tag=Bridge tmtintegrator.run-tmtintegrator=false tmtintegrator.tolerance=20 tmtintegrator.top3_pep=true tmtintegrator.unique_gene=0 tmtintegrator.unique_pep=false tmtintegrator.use_glycan_composition=false workdir=D\:\\JAM\\Sylvain_fragpipe\\Fragpipe_output_6_sequential_prot_0_05 workflow.input.data-type.im-ms=false workflow.input.data-type.regular-ms=true workflow.ram=0 workflow.threads=7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CheckCentroid D:\JAM\fragpipe\jre\bin\java.exe -Xmx30G -cp "D:\JAM\fragpipe\lib\fragpipe-19.1.jar;D:\JAM\fragpipe\tools\batmass-io-1.28.9.jar" com.dmtavt.fragpipe.util.CheckCentroid D:\JAM\Sylvain\S22049-Arjun-1.raw 7 Done in 0 ms. Process 'CheckCentroid' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:10] Executing Workspace v4.8.1 INFO[06:46:10] Removing workspace WARN[06:46:10] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:10] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c94f8d46-567d-44bd-8fb8-6c16abf28b57 INFO[06:46:11] Executing Workspace v4.8.1 INFO[06:46:11] Creating workspace INFO[06:46:11] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:12] Executing Workspace v4.8.1 INFO[06:46:12] Removing workspace WARN[06:46:12] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:12] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\9b0cc359-21af-4d38-88fe-4e4724db6b27 INFO[06:46:13] Executing Workspace v4.8.1 INFO[06:46:13] Creating workspace INFO[06:46:13] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:14] Executing Workspace v4.8.1 INFO[06:46:14] Removing workspace WARN[06:46:14] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:14] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\543419e4-c759-40d5-b252-39e56184428e INFO[06:46:14] Executing Workspace v4.8.1 INFO[06:46:14] Creating workspace INFO[06:46:14] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:15] Executing Workspace v4.8.1 INFO[06:46:15] Removing workspace WARN[06:46:15] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:15] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\0ac9e2f8-eaea-4991-ab58-6240f687a09d INFO[06:46:16] Executing Workspace v4.8.1 INFO[06:46:16] Creating workspace INFO[06:46:16] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:17] Executing Workspace v4.8.1 INFO[06:46:17] Removing workspace WARN[06:46:17] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:17] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\e642189d-6980-475e-8002-c42e0e4a5640 INFO[06:46:18] Executing Workspace v4.8.1 INFO[06:46:18] Creating workspace INFO[06:46:18] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:19] Executing Workspace v4.8.1 INFO[06:46:19] Removing workspace WARN[06:46:19] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:19] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c422ed02-0bab-4184-8d8b-caa2e97a110a INFO[06:46:19] Executing Workspace v4.8.1 INFO[06:46:19] Creating workspace INFO[06:46:19] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:20] Executing Workspace v4.8.1 INFO[06:46:20] Removing workspace WARN[06:46:20] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:20] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\8590a678-3ae1-4eb8-98af-9403a59d95d8 INFO[06:46:21] Executing Workspace v4.8.1 INFO[06:46:21] Creating workspace INFO[06:46:21] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:22] Executing Workspace v4.8.1 INFO[06:46:22] Removing workspace WARN[06:46:22] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:22] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\8a0842c5-1f7f-4b30-b02a-ee131b027759 INFO[06:46:23] Executing Workspace v4.8.1 INFO[06:46:23] Creating workspace INFO[06:46:23] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:23] Executing Workspace v4.8.1 INFO[06:46:23] Removing workspace WARN[06:46:23] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:23] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\eea075a3-58ba-417b-8f34-f88d4b3a76de INFO[06:46:24] Executing Workspace v4.8.1 INFO[06:46:24] Creating workspace INFO[06:46:24] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:25] Executing Workspace v4.8.1 INFO[06:46:25] Removing workspace WARN[06:46:25] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:25] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\61bfe244-d76b-4a83-a958-f0fbcea713cc INFO[06:46:26] Executing Workspace v4.8.1 INFO[06:46:26] Creating workspace INFO[06:46:26] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:26] Executing Workspace v4.8.1 INFO[06:46:26] Removing workspace WARN[06:46:26] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:26] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\d346414f-07bf-4cce-87e4-75650c3ca6d4 INFO[06:46:27] Executing Workspace v4.8.1 INFO[06:46:27] Creating workspace INFO[06:46:27] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:28] Executing Workspace v4.8.1 INFO[06:46:28] Removing workspace WARN[06:46:28] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:28] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c947eb1c-2710-4586-9b5b-c5adefea24df INFO[06:46:29] Executing Workspace v4.8.1 INFO[06:46:29] Creating workspace INFO[06:46:29] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:30] Executing Workspace v4.8.1 INFO[06:46:30] Removing workspace WARN[06:46:30] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:30] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\e28b2b94-c760-4829-9787-f23381ae8cb0 INFO[06:46:30] Executing Workspace v4.8.1 INFO[06:46:30] Creating workspace INFO[06:46:30] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:31] Executing Workspace v4.8.1 INFO[06:46:31] Removing workspace WARN[06:46:31] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:31] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\696d87f0-1d1e-440a-99d2-eda6987c7d1d INFO[06:46:32] Executing Workspace v4.8.1 INFO[06:46:32] Creating workspace INFO[06:46:32] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:32] Executing Workspace v4.8.1 INFO[06:46:32] Removing workspace WARN[06:46:32] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:32] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\229cf57c-6a4c-4b60-9231-6ce47877a4c5 INFO[06:46:33] Executing Workspace v4.8.1 INFO[06:46:33] Creating workspace INFO[06:46:33] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:34] Executing Workspace v4.8.1 INFO[06:46:34] Removing workspace WARN[06:46:34] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:34] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\e5f7f9f9-b9e0-4229-8db8-a40519004723 INFO[06:46:35] Executing Workspace v4.8.1 INFO[06:46:35] Creating workspace INFO[06:46:35] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:36] Executing Workspace v4.8.1 INFO[06:46:36] Removing workspace WARN[06:46:36] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:36] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\74789674-7d0e-45b7-8655-dac0d04498d6 INFO[06:46:37] Executing Workspace v4.8.1 INFO[06:46:37] Creating workspace Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:37] Executing Workspace v4.8.1 INFO[06:46:37] Removing workspace WARN[06:46:37] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:37] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f9350462-7e45-4de3-ba73-7a896c51ef81 INFO[06:46:38] Executing Workspace v4.8.1 INFO[06:46:38] Creating workspace INFO[06:46:38] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:39] Executing Workspace v4.8.1 INFO[06:46:39] Removing workspace WARN[06:46:39] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:39] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\cd4398d0-d42a-467f-aedd-5924942f27f5 INFO[06:46:40] Executing Workspace v4.8.1 INFO[06:46:40] Creating workspace INFO[06:46:40] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:40] Executing Workspace v4.8.1 INFO[06:46:40] Removing workspace WARN[06:46:40] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:40] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\b17ff57c-5bbd-4548-a9d3-da0a6cdee970 INFO[06:46:41] Executing Workspace v4.8.1 INFO[06:46:41] Creating workspace INFO[06:46:41] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:42] Executing Workspace v4.8.1 INFO[06:46:42] Removing workspace WARN[06:46:42] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:42] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\b504ffdd-5857-4803-bbb1-ddcc4ea80c0a INFO[06:46:43] Executing Workspace v4.8.1 INFO[06:46:43] Creating workspace INFO[06:46:43] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:43] Executing Workspace v4.8.1 INFO[06:46:43] Removing workspace WARN[06:46:43] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:43] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\a968651a-1d9e-409f-b5c9-b2617d5155b5 INFO[06:46:44] Executing Workspace v4.8.1 INFO[06:46:44] Creating workspace INFO[06:46:44] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:45] Executing Workspace v4.8.1 INFO[06:46:45] Removing workspace WARN[06:46:45] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:45] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f794cabf-00c4-4177-9fb7-d21a3de4e0ee INFO[06:46:45] Executing Workspace v4.8.1 INFO[06:46:45] Creating workspace INFO[06:46:45] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:46] Executing Workspace v4.8.1 INFO[06:46:46] Removing workspace WARN[06:46:46] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:46] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\e16437e1-e5c7-4b5d-a114-858495e432f4 INFO[06:46:47] Executing Workspace v4.8.1 INFO[06:46:47] Creating workspace INFO[06:46:47] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:48] Executing Workspace v4.8.1 INFO[06:46:48] Removing workspace WARN[06:46:48] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:48] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f8fe481f-4569-42e1-bae8-b24d437d5d94 INFO[06:46:49] Executing Workspace v4.8.1 INFO[06:46:49] Creating workspace INFO[06:46:49] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:50] Executing Workspace v4.8.1 INFO[06:46:50] Removing workspace WARN[06:46:50] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:50] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\cc778239-0935-4214-ac6d-4512df7e9572 INFO[06:46:51] Executing Workspace v4.8.1 INFO[06:46:51] Creating workspace INFO[06:46:51] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:52] Executing Workspace v4.8.1 INFO[06:46:52] Removing workspace WARN[06:46:52] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:52] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c8598711-7c42-448f-8a90-9b61c7bfa11c INFO[06:46:52] Executing Workspace v4.8.1 INFO[06:46:52] Creating workspace INFO[06:46:52] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:53] Executing Workspace v4.8.1 INFO[06:46:53] Removing workspace WARN[06:46:53] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:53] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\73f39c4b-c667-445c-8daf-412aa30ea8a9 INFO[06:46:54] Executing Workspace v4.8.1 INFO[06:46:54] Creating workspace INFO[06:46:54] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:54] Executing Workspace v4.8.1 INFO[06:46:54] Removing workspace WARN[06:46:54] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:54] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\8c984edd-8c41-4362-8311-f91ad45ac229 INFO[06:46:55] Executing Workspace v4.8.1 INFO[06:46:55] Creating workspace INFO[06:46:55] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:56] Executing Workspace v4.8.1 INFO[06:46:56] Removing workspace WARN[06:46:56] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:56] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\5b920690-a42a-4fe8-a082-a4b86cb65450 INFO[06:46:57] Executing Workspace v4.8.1 INFO[06:46:57] Creating workspace INFO[06:46:57] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:46:58] Executing Workspace v4.8.1 INFO[06:46:58] Removing workspace WARN[06:46:58] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:46:58] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\2ec20cbe-329a-48ff-9096-a092888f3142 INFO[06:46:59] Executing Workspace v4.8.1 INFO[06:46:59] Creating workspace INFO[06:46:59] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:00] Executing Workspace v4.8.1 INFO[06:47:00] Removing workspace WARN[06:47:00] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:00] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\7541482e-9dfc-4200-a8bf-7cfc68d8b705 INFO[06:47:01] Executing Workspace v4.8.1 INFO[06:47:01] Creating workspace INFO[06:47:01] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:01] Executing Workspace v4.8.1 INFO[06:47:01] Removing workspace WARN[06:47:01] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:01] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\3860dedf-79ee-49a4-b660-3a98c54cff08 INFO[06:47:02] Executing Workspace v4.8.1 INFO[06:47:02] Creating workspace INFO[06:47:02] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:03] Executing Workspace v4.8.1 INFO[06:47:03] Removing workspace WARN[06:47:03] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:03] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\a0cbd6de-3208-4bc8-bf3c-dcdf72d33ff7 INFO[06:47:04] Executing Workspace v4.8.1 INFO[06:47:04] Creating workspace INFO[06:47:04] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:05] Executing Workspace v4.8.1 INFO[06:47:05] Removing workspace WARN[06:47:05] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:05] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\8f70fc19-5d0b-4a14-9e07-18a479b81b94 INFO[06:47:05] Executing Workspace v4.8.1 INFO[06:47:05] Creating workspace INFO[06:47:05] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:06] Executing Workspace v4.8.1 INFO[06:47:06] Removing workspace WARN[06:47:06] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:06] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\47c7cf23-f5e4-465e-938c-20a276251468 INFO[06:47:07] Executing Workspace v4.8.1 INFO[06:47:07] Creating workspace INFO[06:47:07] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:08] Executing Workspace v4.8.1 INFO[06:47:08] Removing workspace WARN[06:47:08] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:08] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\92e71a51-00f2-4935-8f7a-0819d116bddb INFO[06:47:09] Executing Workspace v4.8.1 INFO[06:47:09] Creating workspace INFO[06:47:09] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:09] Executing Workspace v4.8.1 INFO[06:47:09] Removing workspace WARN[06:47:09] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:09] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\eec767b6-8e05-44e8-9db7-f5dc65d3b113 INFO[06:47:10] Executing Workspace v4.8.1 INFO[06:47:10] Creating workspace INFO[06:47:10] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:11] Executing Workspace v4.8.1 INFO[06:47:11] Removing workspace WARN[06:47:11] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:11] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\eee630cc-4503-4485-800a-d2d8a3d550d6 INFO[06:47:12] Executing Workspace v4.8.1 INFO[06:47:12] Creating workspace INFO[06:47:12] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:13] Executing Workspace v4.8.1 INFO[06:47:13] Removing workspace WARN[06:47:13] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:13] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\adf0b238-29e5-4c5f-8399-77f01c1cc9a4 INFO[06:47:13] Executing Workspace v4.8.1 INFO[06:47:13] Creating workspace INFO[06:47:13] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:14] Executing Workspace v4.8.1 INFO[06:47:14] Removing workspace WARN[06:47:14] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:14] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\dcfe8be0-7b5b-4c41-86f3-41d0c268a0a3 INFO[06:47:15] Executing Workspace v4.8.1 INFO[06:47:15] Creating workspace INFO[06:47:15] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:15] Executing Workspace v4.8.1 INFO[06:47:15] Removing workspace WARN[06:47:15] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:15] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f948ffda-5567-43dc-9496-9ffa7ebb0e52 INFO[06:47:16] Executing Workspace v4.8.1 INFO[06:47:16] Creating workspace INFO[06:47:16] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:17] Executing Workspace v4.8.1 INFO[06:47:17] Removing workspace WARN[06:47:17] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:17] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\e41c2224-5d83-4f08-852e-07114df81f0e INFO[06:47:17] Executing Workspace v4.8.1 INFO[06:47:17] Creating workspace INFO[06:47:17] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:18] Executing Workspace v4.8.1 INFO[06:47:18] Removing workspace WARN[06:47:18] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:18] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\52e1aaf6-2f0f-4e88-8933-8d3a755114bd INFO[06:47:19] Executing Workspace v4.8.1 INFO[06:47:19] Creating workspace INFO[06:47:19] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:20] Executing Workspace v4.8.1 INFO[06:47:20] Removing workspace WARN[06:47:20] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:20] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\38480473-b7e4-4c76-af03-5b2c17656ec4 INFO[06:47:21] Executing Workspace v4.8.1 INFO[06:47:21] Creating workspace INFO[06:47:21] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:22] Executing Workspace v4.8.1 INFO[06:47:22] Removing workspace WARN[06:47:22] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:22] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\a885803f-0c6b-466f-971b-4790dbcd39fe INFO[06:47:22] Executing Workspace v4.8.1 INFO[06:47:22] Creating workspace INFO[06:47:22] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:23] Executing Workspace v4.8.1 INFO[06:47:23] Removing workspace WARN[06:47:23] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:23] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\0f178b6f-f5bb-40f7-948a-4fdae8cf5960 INFO[06:47:24] Executing Workspace v4.8.1 INFO[06:47:24] Creating workspace INFO[06:47:24] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:25] Executing Workspace v4.8.1 INFO[06:47:25] Removing workspace WARN[06:47:25] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:25] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\8d52fb56-4bbf-474a-be67-7b490dfa4564 INFO[06:47:25] Executing Workspace v4.8.1 INFO[06:47:25] Creating workspace INFO[06:47:25] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:26] Executing Workspace v4.8.1 INFO[06:47:26] Removing workspace WARN[06:47:26] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:26] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\9a5a8fb4-8dc2-4c25-9285-e6262ef3b29e INFO[06:47:27] Executing Workspace v4.8.1 INFO[06:47:27] Creating workspace INFO[06:47:27] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:28] Executing Workspace v4.8.1 INFO[06:47:28] Removing workspace WARN[06:47:28] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:28] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\5c8872a8-d1a1-4df7-b347-0311de2d84a8 INFO[06:47:29] Executing Workspace v4.8.1 INFO[06:47:29] Creating workspace INFO[06:47:29] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:29] Executing Workspace v4.8.1 INFO[06:47:29] Removing workspace WARN[06:47:29] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:29] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\d28ac757-d242-441f-ac3b-b374377064d9 INFO[06:47:30] Executing Workspace v4.8.1 INFO[06:47:30] Creating workspace INFO[06:47:30] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:31] Executing Workspace v4.8.1 INFO[06:47:31] Removing workspace WARN[06:47:31] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:31] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\495e5ef2-fd6f-4fa1-90f3-bce26d96c1a9 INFO[06:47:31] Executing Workspace v4.8.1 INFO[06:47:31] Creating workspace INFO[06:47:31] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:32] Executing Workspace v4.8.1 INFO[06:47:32] Removing workspace WARN[06:47:32] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:32] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\8c1f71ff-b4d4-47a7-a433-d02afcc26962 INFO[06:47:33] Executing Workspace v4.8.1 INFO[06:47:33] Creating workspace INFO[06:47:33] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:34] Executing Workspace v4.8.1 INFO[06:47:34] Removing workspace WARN[06:47:34] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:34] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\0bf8f0ec-36d2-4750-b2b8-85317b5ecca0 INFO[06:47:34] Executing Workspace v4.8.1 INFO[06:47:34] Creating workspace INFO[06:47:34] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:35] Executing Workspace v4.8.1 INFO[06:47:35] Removing workspace WARN[06:47:35] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:35] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\2172860e-43c7-490b-876f-9effbd987292 INFO[06:47:36] Executing Workspace v4.8.1 INFO[06:47:36] Creating workspace INFO[06:47:36] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:37] Executing Workspace v4.8.1 INFO[06:47:37] Removing workspace WARN[06:47:37] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:37] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f74e5616-89ed-42dc-8dd3-d8e576fd5dcc INFO[06:47:38] Executing Workspace v4.8.1 INFO[06:47:38] Creating workspace INFO[06:47:38] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:39] Executing Workspace v4.8.1 INFO[06:47:39] Removing workspace WARN[06:47:39] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:39] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\113ea79f-4636-4c98-89e0-628156a0aad9 INFO[06:47:39] Executing Workspace v4.8.1 INFO[06:47:39] Creating workspace INFO[06:47:39] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:40] Executing Workspace v4.8.1 INFO[06:47:40] Removing workspace WARN[06:47:40] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:40] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c6c4cf33-756b-4ef5-be0b-12e80d88f73f INFO[06:47:41] Executing Workspace v4.8.1 INFO[06:47:41] Creating workspace INFO[06:47:41] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:42] Executing Workspace v4.8.1 INFO[06:47:42] Removing workspace WARN[06:47:42] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:42] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\64e0f05a-7216-4442-991f-fdd5dce0d481 INFO[06:47:43] Executing Workspace v4.8.1 INFO[06:47:43] Creating workspace INFO[06:47:43] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:43] Executing Workspace v4.8.1 INFO[06:47:43] Removing workspace WARN[06:47:43] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:43] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\34da92cf-c57f-412f-aac6-3bc24e826ce8 INFO[06:47:44] Executing Workspace v4.8.1 INFO[06:47:44] Creating workspace INFO[06:47:44] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:45] Executing Workspace v4.8.1 INFO[06:47:45] Removing workspace WARN[06:47:45] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:45] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\7754a202-1aa9-488e-94a0-11171a9cd997 INFO[06:47:46] Executing Workspace v4.8.1 INFO[06:47:46] Creating workspace INFO[06:47:46] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:46] Executing Workspace v4.8.1 INFO[06:47:46] Removing workspace WARN[06:47:46] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:46] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\d4c9605d-f91c-4f4b-b453-7848805b794b INFO[06:47:47] Executing Workspace v4.8.1 INFO[06:47:47] Creating workspace INFO[06:47:47] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:48] Executing Workspace v4.8.1 INFO[06:47:48] Removing workspace WARN[06:47:48] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:48] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\24a0e07c-ca7b-4472-b2b4-d83f95e0afb9 INFO[06:47:49] Executing Workspace v4.8.1 INFO[06:47:49] Creating workspace INFO[06:47:49] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:49] Executing Workspace v4.8.1 INFO[06:47:49] Removing workspace WARN[06:47:49] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:49] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\ed64885c-b173-4600-8697-b6aef47d0921 INFO[06:47:50] Executing Workspace v4.8.1 INFO[06:47:50] Creating workspace INFO[06:47:50] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:51] Executing Workspace v4.8.1 INFO[06:47:51] Removing workspace WARN[06:47:51] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:51] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f8fe8887-7dd6-45e3-982f-77f1cfcf29e3 INFO[06:47:52] Executing Workspace v4.8.1 INFO[06:47:52] Creating workspace INFO[06:47:52] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:52] Executing Workspace v4.8.1 INFO[06:47:52] Removing workspace WARN[06:47:52] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:52] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\b3efb3fc-3b68-4384-8f83-e50343a81e70 INFO[06:47:53] Executing Workspace v4.8.1 INFO[06:47:53] Creating workspace INFO[06:47:53] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:54] Executing Workspace v4.8.1 INFO[06:47:54] Removing workspace WARN[06:47:54] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:54] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f4138aaf-efc6-4d9d-b744-7db297b20de2 INFO[06:47:55] Executing Workspace v4.8.1 INFO[06:47:55] Creating workspace INFO[06:47:55] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:55] Executing Workspace v4.8.1 INFO[06:47:55] Removing workspace WARN[06:47:55] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:55] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\7c0a141a-809c-40e3-99e5-9b9773b1dffb INFO[06:47:56] Executing Workspace v4.8.1 INFO[06:47:56] Creating workspace INFO[06:47:56] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:57] Executing Workspace v4.8.1 INFO[06:47:57] Removing workspace WARN[06:47:57] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:57] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\3a7b417a-4c5e-4b8c-8420-f9847aa4fb6f INFO[06:47:58] Executing Workspace v4.8.1 INFO[06:47:58] Creating workspace INFO[06:47:58] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:47:59] Executing Workspace v4.8.1 INFO[06:47:59] Removing workspace WARN[06:47:59] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:47:59] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\d336376f-8e54-4c5f-b7de-b74c8796b3f1 INFO[06:47:59] Executing Workspace v4.8.1 INFO[06:47:59] Creating workspace INFO[06:47:59] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:00] Executing Workspace v4.8.1 INFO[06:48:00] Removing workspace WARN[06:48:00] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:00] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\9ee9e9df-4623-4ed4-8d33-3247c05f1783 INFO[06:48:01] Executing Workspace v4.8.1 INFO[06:48:01] Creating workspace INFO[06:48:01] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:02] Executing Workspace v4.8.1 INFO[06:48:02] Removing workspace WARN[06:48:02] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:02] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f47b35ad-a77f-4eae-aebb-16d52a9388f7 INFO[06:48:02] Executing Workspace v4.8.1 INFO[06:48:02] Creating workspace INFO[06:48:02] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:03] Executing Workspace v4.8.1 INFO[06:48:03] Removing workspace WARN[06:48:03] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:03] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c0b424a2-2bf9-464b-bb59-b6ded7295e88 INFO[06:48:04] Executing Workspace v4.8.1 INFO[06:48:04] Creating workspace INFO[06:48:04] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:05] Executing Workspace v4.8.1 INFO[06:48:05] Removing workspace WARN[06:48:05] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:05] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\210f4432-bd85-40a2-974f-bf75df6dc9ae INFO[06:48:06] Executing Workspace v4.8.1 INFO[06:48:06] Creating workspace INFO[06:48:06] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:07] Executing Workspace v4.8.1 INFO[06:48:07] Removing workspace WARN[06:48:07] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:07] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\4d7aafe3-a22f-47e1-a141-cf67d6d20ee2 INFO[06:48:08] Executing Workspace v4.8.1 INFO[06:48:08] Creating workspace INFO[06:48:08] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:09] Executing Workspace v4.8.1 INFO[06:48:09] Removing workspace WARN[06:48:09] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:09] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\fc253de1-6f3d-46b8-949c-d5aa2fd4585e INFO[06:48:10] Executing Workspace v4.8.1 INFO[06:48:10] Creating workspace INFO[06:48:10] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:10] Executing Workspace v4.8.1 INFO[06:48:10] Removing workspace WARN[06:48:10] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:10] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\abf8f913-f0e4-41f0-a82d-3997510f5bec INFO[06:48:11] Executing Workspace v4.8.1 INFO[06:48:11] Creating workspace INFO[06:48:11] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:12] Executing Workspace v4.8.1 INFO[06:48:12] Removing workspace WARN[06:48:12] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:12] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\ca91430f-6562-452e-908d-c18bd0b5c5e7 INFO[06:48:12] Executing Workspace v4.8.1 INFO[06:48:12] Creating workspace INFO[06:48:12] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:13] Executing Workspace v4.8.1 INFO[06:48:13] Removing workspace WARN[06:48:13] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:13] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\472b9140-f637-4f41-84c8-c3a2f6f98c0c INFO[06:48:14] Executing Workspace v4.8.1 INFO[06:48:14] Creating workspace INFO[06:48:14] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:15] Executing Workspace v4.8.1 INFO[06:48:15] Removing workspace WARN[06:48:15] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:15] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\2a079b3b-526e-4970-b079-f2cd1ae62745 INFO[06:48:15] Executing Workspace v4.8.1 INFO[06:48:15] Creating workspace INFO[06:48:15] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:16] Executing Workspace v4.8.1 INFO[06:48:16] Removing workspace WARN[06:48:16] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:16] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c941bc64-1829-4eca-ba6a-cf07187f216d INFO[06:48:17] Executing Workspace v4.8.1 INFO[06:48:17] Creating workspace INFO[06:48:17] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:18] Executing Workspace v4.8.1 INFO[06:48:18] Removing workspace WARN[06:48:18] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:18] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\883630a8-f727-4023-b0ab-ae40ba16d0fe INFO[06:48:19] Executing Workspace v4.8.1 INFO[06:48:19] Creating workspace INFO[06:48:19] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:20] Executing Workspace v4.8.1 INFO[06:48:20] Removing workspace WARN[06:48:20] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:20] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\fa0cde00-d1c6-44a2-bb5c-427a612e3354 INFO[06:48:20] Executing Workspace v4.8.1 INFO[06:48:20] Creating workspace INFO[06:48:20] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:21] Executing Workspace v4.8.1 INFO[06:48:21] Removing workspace WARN[06:48:21] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:21] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\acd8f016-ac60-4d04-ac49-f725d4f082ff INFO[06:48:22] Executing Workspace v4.8.1 INFO[06:48:22] Creating workspace INFO[06:48:22] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:23] Executing Workspace v4.8.1 INFO[06:48:23] Removing workspace WARN[06:48:23] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:23] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\e08cbf8b-278f-4034-835b-d38a841354ca INFO[06:48:23] Executing Workspace v4.8.1 INFO[06:48:23] Creating workspace INFO[06:48:23] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:24] Executing Workspace v4.8.1 INFO[06:48:24] Removing workspace WARN[06:48:24] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:24] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\95f5547b-ebda-48a5-98de-4fe4b27c0879 INFO[06:48:25] Executing Workspace v4.8.1 INFO[06:48:25] Creating workspace INFO[06:48:25] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:26] Executing Workspace v4.8.1 INFO[06:48:26] Removing workspace WARN[06:48:26] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:26] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\0d9e239e-b1f5-48e6-80e6-2e7705e1a074 INFO[06:48:27] Executing Workspace v4.8.1 INFO[06:48:27] Creating workspace INFO[06:48:27] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:28] Executing Workspace v4.8.1 INFO[06:48:28] Removing workspace WARN[06:48:28] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:28] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\4f7a5e86-66e8-4dc0-96c1-7e48ce1d5f6e INFO[06:48:28] Executing Workspace v4.8.1 INFO[06:48:28] Creating workspace INFO[06:48:28] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:29] Executing Workspace v4.8.1 INFO[06:48:29] Removing workspace WARN[06:48:29] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:29] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\960a2035-5b82-46a1-baa8-18a5e26834f3 INFO[06:48:30] Executing Workspace v4.8.1 INFO[06:48:30] Creating workspace INFO[06:48:30] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:31] Executing Workspace v4.8.1 INFO[06:48:31] Removing workspace WARN[06:48:31] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:31] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\963ccb82-3639-4388-9371-5c78949cb45f INFO[06:48:31] Executing Workspace v4.8.1 INFO[06:48:31] Creating workspace INFO[06:48:31] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:32] Executing Workspace v4.8.1 INFO[06:48:32] Removing workspace WARN[06:48:32] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:32] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\90a6b38c-6131-4688-80dc-a9ee6472e1ed INFO[06:48:33] Executing Workspace v4.8.1 INFO[06:48:33] Creating workspace INFO[06:48:33] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:34] Executing Workspace v4.8.1 INFO[06:48:34] Removing workspace WARN[06:48:34] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:34] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\20510952-f511-459a-a2b7-44ab99318ad2 INFO[06:48:34] Executing Workspace v4.8.1 INFO[06:48:34] Creating workspace INFO[06:48:34] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:35] Executing Workspace v4.8.1 INFO[06:48:35] Removing workspace WARN[06:48:35] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:35] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\1e16d697-f5c1-479e-9f19-a416e2f95ccc INFO[06:48:36] Executing Workspace v4.8.1 INFO[06:48:36] Creating workspace INFO[06:48:36] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:37] Executing Workspace v4.8.1 INFO[06:48:37] Removing workspace WARN[06:48:37] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:37] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\dfd3feda-c6db-41c0-a1f6-ac2b150a6e05 INFO[06:48:37] Executing Workspace v4.8.1 INFO[06:48:37] Creating workspace INFO[06:48:37] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:38] Executing Workspace v4.8.1 INFO[06:48:38] Removing workspace WARN[06:48:38] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:38] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\1e82f5be-2e58-49f6-afeb-1f2e1dba5863 INFO[06:48:39] Executing Workspace v4.8.1 INFO[06:48:39] Creating workspace INFO[06:48:39] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:40] Executing Workspace v4.8.1 INFO[06:48:40] Removing workspace WARN[06:48:40] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:40] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\d8e3d4e2-117e-4ffa-82cb-7090484c9d39 INFO[06:48:40] Executing Workspace v4.8.1 INFO[06:48:40] Creating workspace INFO[06:48:40] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:41] Executing Workspace v4.8.1 INFO[06:48:41] Removing workspace WARN[06:48:41] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:41] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\77299b0d-2342-4cfc-aa03-40bea9e88aa9 INFO[06:48:42] Executing Workspace v4.8.1 INFO[06:48:42] Creating workspace INFO[06:48:42] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:43] Executing Workspace v4.8.1 INFO[06:48:43] Removing workspace WARN[06:48:43] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:43] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\a72e1d1c-4f8a-478c-971a-e5514fcb62b5 INFO[06:48:43] Executing Workspace v4.8.1 INFO[06:48:43] Creating workspace INFO[06:48:43] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:44] Executing Workspace v4.8.1 INFO[06:48:44] Removing workspace WARN[06:48:44] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:44] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\301db16e-5f77-4041-ab60-69f1dfafa320 INFO[06:48:45] Executing Workspace v4.8.1 INFO[06:48:45] Creating workspace INFO[06:48:45] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:46] Executing Workspace v4.8.1 INFO[06:48:46] Removing workspace WARN[06:48:46] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:46] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\0f1280dc-b67a-4ed0-b22d-dbf1a08afb0e INFO[06:48:47] Executing Workspace v4.8.1 INFO[06:48:47] Creating workspace INFO[06:48:47] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:48] Executing Workspace v4.8.1 INFO[06:48:48] Removing workspace WARN[06:48:48] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:48] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\3eccc63e-7bb2-4fb4-a34e-039e7b9df1e3 INFO[06:48:49] Executing Workspace v4.8.1 INFO[06:48:49] Creating workspace INFO[06:48:49] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:49] Executing Workspace v4.8.1 INFO[06:48:49] Removing workspace WARN[06:48:49] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:49] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\9f1ff5de-2d65-4647-809b-b664c22aac75 INFO[06:48:50] Executing Workspace v4.8.1 INFO[06:48:50] Creating workspace INFO[06:48:50] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:51] Executing Workspace v4.8.1 INFO[06:48:51] Removing workspace WARN[06:48:51] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:51] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\69de6793-cafd-41ff-9a90-7e667964bf4b INFO[06:48:52] Executing Workspace v4.8.1 INFO[06:48:52] Creating workspace INFO[06:48:52] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:53] Executing Workspace v4.8.1 INFO[06:48:53] Removing workspace WARN[06:48:53] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:53] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\4841e4a0-27ef-48a9-a665-e6ec3c7d81b8 INFO[06:48:53] Executing Workspace v4.8.1 INFO[06:48:53] Creating workspace INFO[06:48:53] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:54] Executing Workspace v4.8.1 INFO[06:48:54] Removing workspace WARN[06:48:54] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:54] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\df4880c3-1db1-4e6c-8c02-62680b8c8759 INFO[06:48:55] Executing Workspace v4.8.1 INFO[06:48:55] Creating workspace INFO[06:48:55] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:56] Executing Workspace v4.8.1 INFO[06:48:56] Removing workspace WARN[06:48:56] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:56] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\7024443d-adeb-4a86-93c7-9508524caead INFO[06:48:56] Executing Workspace v4.8.1 INFO[06:48:56] Creating workspace INFO[06:48:56] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:57] Executing Workspace v4.8.1 INFO[06:48:57] Removing workspace WARN[06:48:57] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:57] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\4a9636cd-9914-43e2-aa4b-5170fbd9b3ba INFO[06:48:58] Executing Workspace v4.8.1 INFO[06:48:58] Creating workspace INFO[06:48:58] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:48:59] Executing Workspace v4.8.1 INFO[06:48:59] Removing workspace WARN[06:48:59] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:48:59] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\6dff56a7-d3a9-4dce-8c38-58d69e41dd59 INFO[06:49:00] Executing Workspace v4.8.1 INFO[06:49:00] Creating workspace INFO[06:49:00] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:01] Executing Workspace v4.8.1 INFO[06:49:01] Removing workspace WARN[06:49:01] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:01] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\5c65844e-db54-4b4e-a790-9de215ebb57b INFO[06:49:02] Executing Workspace v4.8.1 INFO[06:49:02] Creating workspace INFO[06:49:02] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:02] Executing Workspace v4.8.1 INFO[06:49:02] Removing workspace WARN[06:49:02] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:02] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\7685e739-2e24-4571-afb7-902d0552cd16 INFO[06:49:03] Executing Workspace v4.8.1 INFO[06:49:03] Creating workspace INFO[06:49:03] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:04] Executing Workspace v4.8.1 INFO[06:49:04] Removing workspace WARN[06:49:04] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:04] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\8e3f590b-08c2-41a5-8a13-724f3108ace3 INFO[06:49:05] Executing Workspace v4.8.1 INFO[06:49:05] Creating workspace INFO[06:49:05] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:05] Executing Workspace v4.8.1 INFO[06:49:05] Removing workspace WARN[06:49:05] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:05] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\ef70f08b-b18d-4408-8d83-c397298d506e INFO[06:49:06] Executing Workspace v4.8.1 INFO[06:49:06] Creating workspace INFO[06:49:06] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:07] Executing Workspace v4.8.1 INFO[06:49:07] Removing workspace WARN[06:49:07] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:07] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\5d60b7b7-0f8d-42b4-8431-ed78de0e5088 INFO[06:49:08] Executing Workspace v4.8.1 INFO[06:49:08] Creating workspace INFO[06:49:08] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:09] Executing Workspace v4.8.1 INFO[06:49:09] Removing workspace WARN[06:49:09] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:09] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\516fa28c-50ed-46ec-a306-bbc96f5f98e3 INFO[06:49:09] Executing Workspace v4.8.1 INFO[06:49:09] Creating workspace INFO[06:49:09] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:10] Executing Workspace v4.8.1 INFO[06:49:10] Removing workspace WARN[06:49:10] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:10] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\b4718fc0-902b-415d-bb92-70e957953c05 INFO[06:49:11] Executing Workspace v4.8.1 INFO[06:49:11] Creating workspace INFO[06:49:11] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:12] Executing Workspace v4.8.1 INFO[06:49:12] Removing workspace WARN[06:49:12] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:12] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\6b69ef24-0bb4-438a-abd0-710fd18f24cf INFO[06:49:13] Executing Workspace v4.8.1 INFO[06:49:13] Creating workspace INFO[06:49:13] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:14] Executing Workspace v4.8.1 INFO[06:49:14] Removing workspace WARN[06:49:14] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:14] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\316dfb24-dca3-4021-a82c-74ba7b61eaca INFO[06:49:15] Executing Workspace v4.8.1 INFO[06:49:15] Creating workspace INFO[06:49:15] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:16] Executing Workspace v4.8.1 INFO[06:49:16] Removing workspace WARN[06:49:16] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:16] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c4b02a5e-0725-4ffc-9579-c639265084d2 INFO[06:49:16] Executing Workspace v4.8.1 INFO[06:49:16] Creating workspace INFO[06:49:16] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:17] Executing Workspace v4.8.1 INFO[06:49:17] Removing workspace WARN[06:49:17] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:17] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\ebdcf987-fe8d-4a08-9c3f-68bd709c6512 INFO[06:49:18] Executing Workspace v4.8.1 INFO[06:49:18] Creating workspace INFO[06:49:18] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:19] Executing Workspace v4.8.1 INFO[06:49:19] Removing workspace WARN[06:49:19] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:19] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\0ec29c64-7fb9-48da-b54b-4a5c6072f3cb INFO[06:49:19] Executing Workspace v4.8.1 INFO[06:49:19] Creating workspace INFO[06:49:19] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:20] Executing Workspace v4.8.1 INFO[06:49:20] Removing workspace WARN[06:49:20] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:20] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\feb992b2-2ffe-459e-94ec-7c4d35873b26 INFO[06:49:21] Executing Workspace v4.8.1 INFO[06:49:21] Creating workspace INFO[06:49:21] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:21] Executing Workspace v4.8.1 INFO[06:49:21] Removing workspace WARN[06:49:21] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:21] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\becf3fe1-4f0c-414e-9d93-962f0b32f20c INFO[06:49:22] Executing Workspace v4.8.1 INFO[06:49:22] Creating workspace INFO[06:49:22] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:23] Executing Workspace v4.8.1 INFO[06:49:23] Removing workspace WARN[06:49:23] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:23] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\2d22710f-c0ff-4f42-8a76-c545990ed307 INFO[06:49:24] Executing Workspace v4.8.1 INFO[06:49:24] Creating workspace INFO[06:49:24] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:24] Executing Workspace v4.8.1 INFO[06:49:24] Removing workspace WARN[06:49:24] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:24] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\45689b1e-5e28-4715-b39b-35f4a906facf INFO[06:49:25] Executing Workspace v4.8.1 INFO[06:49:25] Creating workspace INFO[06:49:25] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:26] Executing Workspace v4.8.1 INFO[06:49:26] Removing workspace WARN[06:49:26] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:26] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\65216afe-4d74-486e-b5b8-a241f0a71d92 INFO[06:49:27] Executing Workspace v4.8.1 INFO[06:49:27] Creating workspace INFO[06:49:27] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:27] Executing Workspace v4.8.1 INFO[06:49:27] Removing workspace WARN[06:49:27] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:27] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\60f2cdbe-fbf7-4e72-ad66-5604049e8e37 INFO[06:49:28] Executing Workspace v4.8.1 INFO[06:49:28] Creating workspace INFO[06:49:28] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:29] Executing Workspace v4.8.1 INFO[06:49:29] Removing workspace WARN[06:49:29] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:29] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\01789d1f-dd63-4e95-945c-73ef67f306f3 INFO[06:49:30] Executing Workspace v4.8.1 INFO[06:49:30] Creating workspace INFO[06:49:30] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:30] Executing Workspace v4.8.1 INFO[06:49:30] Removing workspace WARN[06:49:30] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:30] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\10b4da56-eb43-405e-a62b-a99650ad6536 INFO[06:49:31] Executing Workspace v4.8.1 INFO[06:49:31] Creating workspace INFO[06:49:31] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:32] Executing Workspace v4.8.1 INFO[06:49:32] Removing workspace WARN[06:49:32] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:32] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\f0473833-2742-4101-bf82-40040d8d8ad8 INFO[06:49:33] Executing Workspace v4.8.1 INFO[06:49:33] Creating workspace INFO[06:49:33] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:33] Executing Workspace v4.8.1 INFO[06:49:33] Removing workspace WARN[06:49:33] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:33] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\a2f33ce4-8e42-404e-bfd4-11dfc4a72fbb INFO[06:49:34] Executing Workspace v4.8.1 INFO[06:49:34] Creating workspace INFO[06:49:34] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:35] Executing Workspace v4.8.1 INFO[06:49:35] Removing workspace WARN[06:49:35] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:35] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\80d217ec-b07e-46bf-9975-5aac562b778c INFO[06:49:36] Executing Workspace v4.8.1 INFO[06:49:36] Creating workspace INFO[06:49:36] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:37] Executing Workspace v4.8.1 INFO[06:49:37] Removing workspace WARN[06:49:37] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:37] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\5784d635-4ebe-4a22-a4b1-ccbe050001f6 INFO[06:49:37] Executing Workspace v4.8.1 INFO[06:49:37] Creating workspace INFO[06:49:37] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:38] Executing Workspace v4.8.1 INFO[06:49:38] Removing workspace WARN[06:49:38] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:38] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\7fde390f-8ce8-458d-b7d3-106ed9d6e89c INFO[06:49:39] Executing Workspace v4.8.1 INFO[06:49:39] Creating workspace INFO[06:49:39] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:40] Executing Workspace v4.8.1 INFO[06:49:40] Removing workspace WARN[06:49:40] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:40] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\bee8c1cb-5a2b-415f-a03d-d779b31c6fd0 INFO[06:49:41] Executing Workspace v4.8.1 INFO[06:49:41] Creating workspace INFO[06:49:41] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:42] Executing Workspace v4.8.1 INFO[06:49:42] Removing workspace WARN[06:49:42] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:42] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\31ae58c8-9be3-4c47-b2ee-ff41f014292c INFO[06:49:43] Executing Workspace v4.8.1 INFO[06:49:43] Creating workspace INFO[06:49:43] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:43] Executing Workspace v4.8.1 INFO[06:49:43] Removing workspace WARN[06:49:43] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:43] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\13a21fb1-36b0-431b-b71f-4c488f20bb30 INFO[06:49:44] Executing Workspace v4.8.1 INFO[06:49:44] Creating workspace INFO[06:49:44] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:45] Executing Workspace v4.8.1 INFO[06:49:45] Removing workspace WARN[06:49:45] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:45] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\02a1d31d-2c78-49c2-b853-73d90c19e971 INFO[06:49:45] Executing Workspace v4.8.1 INFO[06:49:45] Creating workspace INFO[06:49:45] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:46] Executing Workspace v4.8.1 INFO[06:49:46] Removing workspace WARN[06:49:46] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:46] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\14d6c98b-828f-4a96-b5a0-d55774ade8a5 INFO[06:49:47] Executing Workspace v4.8.1 INFO[06:49:47] Creating workspace INFO[06:49:47] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:48] Executing Workspace v4.8.1 INFO[06:49:48] Removing workspace WARN[06:49:48] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:48] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\baa8ef61-f646-44ec-a4a9-d85c744b6b88 INFO[06:49:49] Executing Workspace v4.8.1 INFO[06:49:49] Creating workspace INFO[06:49:49] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:49] Executing Workspace v4.8.1 INFO[06:49:49] Removing workspace WARN[06:49:49] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:49] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\cca195f9-bf7d-4330-a129-700316163471 INFO[06:49:50] Executing Workspace v4.8.1 INFO[06:49:50] Creating workspace INFO[06:49:50] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:51] Executing Workspace v4.8.1 INFO[06:49:51] Removing workspace WARN[06:49:51] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:51] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\5cf52c67-d232-4d40-9b7e-df7f2378ef67 INFO[06:49:52] Executing Workspace v4.8.1 INFO[06:49:52] Creating workspace INFO[06:49:52] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:53] Executing Workspace v4.8.1 INFO[06:49:53] Removing workspace WARN[06:49:53] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:53] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\c7c5f95b-4629-46f6-8d2c-f596c4161e3c INFO[06:49:54] Executing Workspace v4.8.1 INFO[06:49:54] Creating workspace INFO[06:49:54] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:54] Executing Workspace v4.8.1 INFO[06:49:54] Removing workspace WARN[06:49:54] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:54] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\cd4b08f9-6864-4ffc-babc-ca5840f40ff7 INFO[06:49:55] Executing Workspace v4.8.1 INFO[06:49:55] Creating workspace INFO[06:49:55] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[06:49:56] Executing Workspace v4.8.1 INFO[06:49:56] Removing workspace WARN[06:49:56] Cannot read file. open .meta\meta.bin: The system cannot find the path specified. INFO[06:49:56] Done Process 'WorkspaceCleanInit' finished, exit code: 0 WorkspaceCleanInit [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --init --nocheck --temp C:\Users\jmcalist\AppData\Local\Temp\fbf68f9f-23b8-4023-89f3-8b4747b53ab7 INFO[06:49:56] Executing Workspace v4.8.1 INFO[06:49:56] Creating workspace INFO[06:49:56] Done Process 'WorkspaceCleanInit' finished, exit code: 0 MSFragger [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\jre\bin\java.exe -jar -Dfile.encoding=UTF-8 -Xmx30G D:\JAM\fragpipe\tools\MSFragger-3.7\MSFragger-3.7.jar D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\fragger.params D:\JAM\Sylvain\S22049-Arjun-1.raw D:\JAM\Sylvain\S22049-Arjun-10.raw D:\JAM\Sylvain\S22049-Arjun-100.raw D:\JAM\Sylvain\S22049-Arjun-101.raw D:\JAM\Sylvain\S22049-Arjun-102.raw D:\JAM\Sylvain\S22049-Arjun-103.raw D:\JAM\Sylvain\S22049-Arjun-104.raw D:\JAM\Sylvain\S22049-Arjun-105.raw D:\JAM\Sylvain\S22049-Arjun-106.raw D:\JAM\Sylvain\S22049-Arjun-107.raw D:\JAM\Sylvain\S22049-Arjun-108.raw D:\JAM\Sylvain\S22049-Arjun-109.raw D:\JAM\Sylvain\S22049-Arjun-11.raw D:\JAM\Sylvain\S22049-Arjun-110.raw D:\JAM\Sylvain\S22049-Arjun-111.raw D:\JAM\Sylvain\S22049-Arjun-112.raw D:\JAM\Sylvain\S22049-Arjun-113.raw D:\JAM\Sylvain\S22049-Arjun-114.raw D:\JAM\Sylvain\S22049-Arjun-115.raw D:\JAM\Sylvain\S22049-Arjun-116.raw D:\JAM\Sylvain\S22049-Arjun-117.raw D:\JAM\Sylvain\S22049-Arjun-118.raw D:\JAM\Sylvain\S22049-Arjun-119.raw D:\JAM\Sylvain\S22049-Arjun-12.raw D:\JAM\Sylvain\S22049-Arjun-120.raw D:\JAM\Sylvain\S22049-Arjun-121.raw D:\JAM\Sylvain\S22049-Arjun-122.raw D:\JAM\Sylvain\S22049-Arjun-123.raw D:\JAM\Sylvain\S22049-Arjun-125.raw D:\JAM\Sylvain\S22049-Arjun-126.raw D:\JAM\Sylvain\S22049-Arjun-127.raw D:\JAM\Sylvain\S22049-Arjun-128.raw D:\JAM\Sylvain\S22049-Arjun-129.raw D:\JAM\Sylvain\S22049-Arjun-13.raw D:\JAM\Sylvain\S22049-Arjun-130.raw D:\JAM\Sylvain\S22049-Arjun-131.raw D:\JAM\Sylvain\S22049-Arjun-132.raw D:\JAM\Sylvain\S22049-Arjun-133.raw D:\JAM\Sylvain\S22049-Arjun-134.raw D:\JAM\Sylvain\S22049-Arjun-135.raw D:\JAM\Sylvain\S22049-Arjun-136.raw D:\JAM\Sylvain\S22049-Arjun-137.raw D:\JAM\Sylvain\S22049-Arjun-138.raw D:\JAM\Sylvain\S22049-Arjun-139.raw D:\JAM\Sylvain\S22049-Arjun-14.raw D:\JAM\Sylvain\S22049-Arjun-140.raw D:\JAM\Sylvain\S22049-Arjun-141.raw D:\JAM\Sylvain\S22049-Arjun-142.raw D:\JAM\Sylvain\S22049-Arjun-143.raw D:\JAM\Sylvain\S22049-Arjun-144.raw D:\JAM\Sylvain\S22049-Arjun-15.raw D:\JAM\Sylvain\S22049-Arjun-16.raw D:\JAM\Sylvain\S22049-Arjun-17.raw D:\JAM\Sylvain\S22049-Arjun-18.raw D:\JAM\Sylvain\S22049-Arjun-19.raw D:\JAM\Sylvain\S22049-Arjun-2.raw D:\JAM\Sylvain\S22049-Arjun-20.raw D:\JAM\Sylvain\S22049-Arjun-21.raw D:\JAM\Sylvain\S22049-Arjun-22.raw D:\JAM\Sylvain\S22049-Arjun-23.raw D:\JAM\Sylvain\S22049-Arjun-24.raw D:\JAM\Sylvain\S22049-Arjun-25.raw D:\JAM\Sylvain\S22049-Arjun-26.raw D:\JAM\Sylvain\S22049-Arjun-27.raw D:\JAM\Sylvain\S22049-Arjun-28.raw D:\JAM\Sylvain\S22049-Arjun-29.raw D:\JAM\Sylvain\S22049-Arjun-3.raw D:\JAM\Sylvain\S22049-Arjun-30.raw D:\JAM\Sylvain\S22049-Arjun-31.raw D:\JAM\Sylvain\S22049-Arjun-32.raw D:\JAM\Sylvain\S22049-Arjun-33.raw D:\JAM\Sylvain\S22049-Arjun-34.raw D:\JAM\Sylvain\S22049-Arjun-35.raw D:\JAM\Sylvain\S22049-Arjun-36.raw D:\JAM\Sylvain\S22049-Arjun-37.raw D:\JAM\Sylvain\S22049-Arjun-38.raw D:\JAM\Sylvain\S22049-Arjun-39.raw D:\JAM\Sylvain\S22049-Arjun-4.raw D:\JAM\Sylvain\S22049-Arjun-40.raw D:\JAM\Sylvain\S22049-Arjun-41.raw D:\JAM\Sylvain\S22049-Arjun-42.raw D:\JAM\Sylvain\S22049-Arjun-43.raw D:\JAM\Sylvain\S22049-Arjun-44.raw D:\JAM\Sylvain\S22049-Arjun-45.raw D:\JAM\Sylvain\S22049-Arjun-46.raw D:\JAM\Sylvain\S22049-Arjun-47.raw D:\JAM\Sylvain\S22049-Arjun-48.raw D:\JAM\Sylvain\S22049-Arjun-49.raw D:\JAM\Sylvain\S22049-Arjun-5.raw D:\JAM\Sylvain\S22049-Arjun-50.raw D:\JAM\Sylvain\S22049-Arjun-51.raw D:\JAM\Sylvain\S22049-Arjun-52.raw D:\JAM\Sylvain\S22049-Arjun-53.raw D:\JAM\Sylvain\S22049-Arjun-54.raw D:\JAM\Sylvain\S22049-Arjun-55.raw D:\JAM\Sylvain\S22049-Arjun-56.raw D:\JAM\Sylvain\S22049-Arjun-57.raw D:\JAM\Sylvain\S22049-Arjun-58-2nd.raw D:\JAM\Sylvain\S22049-Arjun-59-2nd.raw D:\JAM\Sylvain\S22049-Arjun-6.raw D:\JAM\Sylvain\S22049-Arjun-60-2nd.raw D:\JAM\Sylvain\S22049-Arjun-61-2nd.raw D:\JAM\Sylvain\S22049-Arjun-62-2nd.raw D:\JAM\Sylvain\S22049-Arjun-63-2nd.raw D:\JAM\Sylvain\S22049-Arjun-64-2nd.raw D:\JAM\Sylvain\S22049-Arjun-65-2nd.raw D:\JAM\Sylvain\S22049-Arjun-66-2nd.raw D:\JAM\Sylvain\S22049-Arjun-67.raw D:\JAM\Sylvain\S22049-Arjun-68.raw D:\JAM\Sylvain\S22049-Arjun-69.raw D:\JAM\Sylvain\S22049-Arjun-7.raw D:\JAM\Sylvain\S22049-Arjun-70.raw D:\JAM\Sylvain\S22049-Arjun-71.raw D:\JAM\Sylvain\S22049-Arjun-72.raw D:\JAM\Sylvain\S22049-Arjun-73.raw D:\JAM\Sylvain\S22049-Arjun-74.raw D:\JAM\Sylvain\S22049-Arjun-75.raw D:\JAM\Sylvain\S22049-Arjun-76.raw D:\JAM\Sylvain\S22049-Arjun-77.raw D:\JAM\Sylvain\S22049-Arjun-78.raw D:\JAM\Sylvain\S22049-Arjun-79.raw D:\JAM\Sylvain\S22049-Arjun-8.raw D:\JAM\Sylvain\S22049-Arjun-80.raw D:\JAM\Sylvain\S22049-Arjun-81.raw D:\JAM\Sylvain\S22049-Arjun-82.raw D:\JAM\Sylvain\S22049-Arjun-83.raw D:\JAM\Sylvain\S22049-Arjun-84-2nd.raw D:\JAM\Sylvain\S22049-Arjun-85.raw D:\JAM\Sylvain\S22049-Arjun-86.raw D:\JAM\Sylvain\S22049-Arjun-87.raw D:\JAM\Sylvain\S22049-Arjun-88.raw D:\JAM\Sylvain\S22049-Arjun-89.raw D:\JAM\Sylvain\S22049-Arjun-9.raw D:\JAM\Sylvain\S22049-Arjun-90.raw D:\JAM\Sylvain\S22049-Arjun-91.raw D:\JAM\Sylvain\S22049-Arjun-92.raw D:\JAM\Sylvain\S22049-Arjun-93.raw D:\JAM\Sylvain\S22049-Arjun-94.raw D:\JAM\Sylvain\S22049-Arjun-95.raw D:\JAM\Sylvain\S22049-Arjun-96.raw D:\JAM\Sylvain\S22049-Arjun-97.raw D:\JAM\Sylvain\S22049-Arjun-98.raw D:\JAM\Sylvain\S22049-Arjun-99.raw MSFragger version MSFragger-3.7 Batmass-IO version 1.28.9 timsdata library version timsdata-2-21-0-4 (c) University of Michigan RawFileReader reading tool. Copyright (c) 2016 by Thermo Fisher Scientific, Inc. All rights reserved. timdTOF .d reading tool. Copyright (c) 2022 by Bruker Daltonics GmbH & Co. KG. All rights reserved. System OS: Windows 10, Architecture: AMD64 Java Info: 11.0.9.1, OpenJDK 64-Bit Server VM, AdoptOpenJDK JVM started with 30 GB memory Checking database... Checking spectral files... D:\JAM\Sylvain\S22049-Arjun-136.raw: Scans = 108249 D:\JAM\Sylvain\S22049-Arjun-1.raw: Scans = 117479 D:\JAM\Sylvain\S22049-Arjun-80.raw: Scans = 112403 D:\JAM\Sylvain\S22049-Arjun-25.raw: Scans = 118145 D:\JAM\Sylvain\S22049-Arjun-62-2nd.raw: Scans = 112225 D:\JAM\Sylvain\S22049-Arjun-117.raw: Scans = 114980 [pool-1-thread-3] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Did not get port information from server output within timeout. [pool-10-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Error while scanning stream java.lang.InterruptedException: sleep interrupted at java.base/java.lang.Thread.sleep(Native Method) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.scanStreamForPattern(ThermoGrpcServerProcess.java:319) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.lambda$start$7(ThermoGrpcServerProcess.java:261) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source) [pool-10-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Batmass-IO Thermo server (1.3.0.0) By Nesvizhskii Lab, University of Michigan D:\JAM\Sylvain\S22049-Arjun-43.raw: Scans = 121878 D:\JAM\Sylvain\S22049-Arjun-137.raw: Scans = 108334 D:\JAM\Sylvain\S22049-Arjun-81.raw: Scans = 114539 D:\JAM\Sylvain\S22049-Arjun-63-2nd.raw: Scans = 114252 D:\JAM\Sylvain\S22049-Arjun-26.raw: Scans = 119030 D:\JAM\Sylvain\S22049-Arjun-44.raw: Scans = 122131 D:\JAM\Sylvain\S22049-Arjun-118.raw: Scans = 116224 D:\JAM\Sylvain\S22049-Arjun-10.raw: Scans = 121829 D:\JAM\Sylvain\S22049-Arjun-138.raw: Scans = 110282 D:\JAM\Sylvain\S22049-Arjun-82.raw: Scans = 114127 D:\JAM\Sylvain\S22049-Arjun-64-2nd.raw: Scans = 112102 [pool-1-thread-3] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Did not get port information from server output within timeout. [pool-26-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Error while scanning stream java.lang.InterruptedException: sleep interrupted at java.base/java.lang.Thread.sleep(Native Method) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.scanStreamForPattern(ThermoGrpcServerProcess.java:319) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.lambda$start$7(ThermoGrpcServerProcess.java:261) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source) [pool-26-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Batmass-IO Thermo server (1.3.0.0) By Nesvizhskii Lab, University of Michigan D:\JAM\Sylvain\S22049-Arjun-119.raw: Scans = 112860 D:\JAM\Sylvain\S22049-Arjun-45.raw: Scans = 121396 D:\JAM\Sylvain\S22049-Arjun-100.raw: Scans = 111408 D:\JAM\Sylvain\S22049-Arjun-27.raw: Scans = 119842 D:\JAM\Sylvain\S22049-Arjun-83.raw: Scans = 115581 D:\JAM\Sylvain\S22049-Arjun-101.raw: Scans = 112174 D:\JAM\Sylvain\S22049-Arjun-46.raw: Scans = 121147 D:\JAM\Sylvain\S22049-Arjun-65-2nd.raw: Scans = 112339 D:\JAM\Sylvain\S22049-Arjun-139.raw: Scans = 112646 D:\JAM\Sylvain\S22049-Arjun-12.raw: Scans = 115842 D:\JAM\Sylvain\S22049-Arjun-28.raw: Scans = 123016 D:\JAM\Sylvain\S22049-Arjun-14.raw: Scans = 111601 D:\JAM\Sylvain\S22049-Arjun-102.raw: Scans = 116027 D:\JAM\Sylvain\S22049-Arjun-66-2nd.raw: Scans = 112355 D:\JAM\Sylvain\S22049-Arjun-84-2nd.raw: Scans = 115612 D:\JAM\Sylvain\S22049-Arjun-47.raw: Scans = 121597 D:\JAM\Sylvain\S22049-Arjun-120.raw: Scans = 112113 D:\JAM\Sylvain\S22049-Arjun-29.raw: Scans = 121234 D:\JAM\Sylvain\S22049-Arjun-140.raw: Scans = 111506 D:\JAM\Sylvain\S22049-Arjun-103.raw: Scans = 114205 D:\JAM\Sylvain\S22049-Arjun-67.raw: Scans = 111984 D:\JAM\Sylvain\S22049-Arjun-85.raw: Scans = 118510 D:\JAM\Sylvain\S22049-Arjun-48.raw: Scans = 120130 D:\JAM\Sylvain\S22049-Arjun-121.raw: Scans = 111446 D:\JAM\Sylvain\S22049-Arjun-3.raw: Scans = 121999 D:\JAM\Sylvain\S22049-Arjun-104.raw: Scans = 111731 D:\JAM\Sylvain\S22049-Arjun-141.raw: Scans = 111592 D:\JAM\Sylvain\S22049-Arjun-68.raw: Scans = 112356 D:\JAM\Sylvain\S22049-Arjun-86.raw: Scans = 118286 D:\JAM\Sylvain\S22049-Arjun-49.raw: Scans = 123117 D:\JAM\Sylvain\S22049-Arjun-122.raw: Scans = 111174 D:\JAM\Sylvain\S22049-Arjun-30.raw: Scans = 119898 D:\JAM\Sylvain\S22049-Arjun-142.raw: Scans = 112252 D:\JAM\Sylvain\S22049-Arjun-105.raw: Scans = 113899 D:\JAM\Sylvain\S22049-Arjun-69.raw: Scans = 112322 D:\JAM\Sylvain\S22049-Arjun-87.raw: Scans = 118817 D:\JAM\Sylvain\S22049-Arjun-123.raw: Scans = 112434 D:\JAM\Sylvain\S22049-Arjun-5.raw: Scans = 118790 D:\JAM\Sylvain\S22049-Arjun-31.raw: Scans = 116880 D:\JAM\Sylvain\S22049-Arjun-143.raw: Scans = 111488 D:\JAM\Sylvain\S22049-Arjun-106.raw: Scans = 113492 D:\JAM\Sylvain\S22049-Arjun-88.raw: Scans = 117600 D:\JAM\Sylvain\S22049-Arjun-125.raw: Scans = 113607 D:\JAM\Sylvain\S22049-Arjun-7.raw: Scans = 123764 [pool-1-thread-7] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Did not get port information from server output within timeout. [pool-1-thread-6] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Did not get port information from server output within timeout. [pool-73-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Error while scanning stream java.lang.InterruptedException: sleep interrupted at java.base/java.lang.Thread.sleep(Native Method) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.scanStreamForPattern(ThermoGrpcServerProcess.java:319) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.lambda$start$7(ThermoGrpcServerProcess.java:261) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source) [pool-73-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Batmass-IO Thermo server (1.3.0.0) By Nesvizhskii Lab, University of Michigan D:\JAM\Sylvain\S22049-Arjun-50.raw: Scans = 122324 [pool-1-thread-2] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Did not get port information from server output within timeout. D:\JAM\Sylvain\S22049-Arjun-32.raw: Scans = 117250 D:\JAM\Sylvain\S22049-Arjun-107.raw: Scans = 112621 D:\JAM\Sylvain\S22049-Arjun-144.raw: Scans = 114200 D:\JAM\Sylvain\S22049-Arjun-89.raw: Scans = 116997 D:\JAM\Sylvain\S22049-Arjun-126.raw: Scans = 114320 D:\JAM\Sylvain\S22049-Arjun-51.raw: Scans = 124722 D:\JAM\Sylvain\S22049-Arjun-33.raw: Scans = 116198 D:\JAM\Sylvain\S22049-Arjun-70.raw: Scans = 116860 D:\JAM\Sylvain\S22049-Arjun-108.raw: Scans = 111626 D:\JAM\Sylvain\S22049-Arjun-15.raw: Scans = 112129 D:\JAM\Sylvain\S22049-Arjun-9.raw: Scans = 122798 D:\JAM\Sylvain\S22049-Arjun-127.raw: Scans = 114079 D:\JAM\Sylvain\S22049-Arjun-71.raw: Scans = 117153 D:\JAM\Sylvain\S22049-Arjun-34.raw: Scans = 116759 D:\JAM\Sylvain\S22049-Arjun-52.raw: Scans = 124032 D:\JAM\Sylvain\S22049-Arjun-109.raw: Scans = 112587 D:\JAM\Sylvain\S22049-Arjun-16.raw: Scans = 113307 D:\JAM\Sylvain\S22049-Arjun-90.raw: Scans = 114967 D:\JAM\Sylvain\S22049-Arjun-128.raw: Scans = 110452 [pool-1-thread-7] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Did not get port information from server output within timeout. [pool-95-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Error while scanning stream java.lang.InterruptedException: sleep interrupted at java.base/java.lang.Thread.sleep(Native Method) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.scanStreamForPattern(ThermoGrpcServerProcess.java:319) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.lambda$start$7(ThermoGrpcServerProcess.java:261) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source) [pool-95-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - D:\JAM\Sylvain\S22049-Arjun-72.raw: Scans = 113401 [pool-1-thread-2] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Did not get port information from server output within timeout. [pool-96-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Error while scanning stream java.lang.InterruptedException: sleep interrupted at java.base/java.lang.Thread.sleep(Native Method) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.scanStreamForPattern(ThermoGrpcServerProcess.java:319) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.lambda$start$7(ThermoGrpcServerProcess.java:261) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source) [pool-96-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - D:\JAM\Sylvain\S22049-Arjun-35.raw: Scans = 116966 [pool-1-thread-6] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Did not get port information from server output within timeout. [pool-97-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Error while scanning stream java.lang.InterruptedException: sleep interrupted at java.base/java.lang.Thread.sleep(Native Method) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.scanStreamForPattern(ThermoGrpcServerProcess.java:319) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.lambda$start$7(ThermoGrpcServerProcess.java:261) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source) [pool-97-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Batmass-IO Thermo server (1.3.0.0) By Nesvizhskii Lab, University of Michigan [pool-1-thread-7] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Did not get port information from server output within timeout. D:\JAM\Sylvain\S22049-Arjun-53.raw: Scans = 124535 D:\JAM\Sylvain\S22049-Arjun-17.raw: Scans = 115297 D:\JAM\Sylvain\S22049-Arjun-11.raw: Scans = 113678 D:\JAM\Sylvain\S22049-Arjun-129.raw: Scans = 109584 D:\JAM\Sylvain\S22049-Arjun-36.raw: Scans = 118105 D:\JAM\Sylvain\S22049-Arjun-73.raw: Scans = 111887 D:\JAM\Sylvain\S22049-Arjun-54.raw: Scans = 124584 D:\JAM\Sylvain\S22049-Arjun-91.raw: Scans = 115332 D:\JAM\Sylvain\S22049-Arjun-18.raw: Scans = 112253 D:\JAM\Sylvain\S22049-Arjun-110.raw: Scans = 112683 [pool-1-thread-3] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Did not get port information from server output within timeout. [pool-111-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Error while scanning stream java.lang.InterruptedException: sleep interrupted at java.base/java.lang.Thread.sleep(Native Method) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.scanStreamForPattern(ThermoGrpcServerProcess.java:319) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.lambda$start$7(ThermoGrpcServerProcess.java:261) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source) [pool-111-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - D:\JAM\Sylvain\S22049-Arjun-37.raw: Scans = 120075 D:\JAM\Sylvain\S22049-Arjun-74.raw: Scans = 112773 D:\JAM\Sylvain\S22049-Arjun-92.raw: Scans = 113640 D:\JAM\Sylvain\S22049-Arjun-13.raw: Scans = 115853 D:\JAM\Sylvain\S22049-Arjun-55.raw: Scans = 123226 D:\JAM\Sylvain\S22049-Arjun-111.raw: Scans = 112763 D:\JAM\Sylvain\S22049-Arjun-19.raw: Scans = 116972 D:\JAM\Sylvain\S22049-Arjun-38.raw: Scans = 120616 [pool-1-thread-4] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Did not get port information from server output within timeout. D:\JAM\Sylvain\S22049-Arjun-75.raw: Scans = 112546 D:\JAM\Sylvain\S22049-Arjun-130.raw: Scans = 110808 [pool-1-thread-4] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Did not get port information from server output within timeout. [pool-122-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Error while scanning stream java.lang.InterruptedException: sleep interrupted at java.base/java.lang.Thread.sleep(Native Method) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.scanStreamForPattern(ThermoGrpcServerProcess.java:319) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.lambda$start$7(ThermoGrpcServerProcess.java:261) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source) [pool-122-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - D:\JAM\Sylvain\S22049-Arjun-56.raw: Scans = 124755 D:\JAM\Sylvain\S22049-Arjun-93.raw: Scans = 113791 [pool-1-thread-6] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Did not get port information from server output within timeout. [pool-123-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Error while scanning stream java.lang.InterruptedException: sleep interrupted at java.base/java.lang.Thread.sleep(Native Method) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.scanStreamForPattern(ThermoGrpcServerProcess.java:319) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.lambda$start$7(ThermoGrpcServerProcess.java:261) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source) [pool-123-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - [pool-1-thread-2] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Did not get port information from server output within timeout. [pool-124-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Error while scanning stream java.lang.InterruptedException: sleep interrupted at java.base/java.lang.Thread.sleep(Native Method) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.scanStreamForPattern(ThermoGrpcServerProcess.java:319) at com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess.lambda$start$7(ThermoGrpcServerProcess.java:261) at java.base/java.util.concurrent.FutureTask.run(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.base/java.lang.Thread.run(Unknown Source) [pool-124-thread-1] ERROR com.dmtavt.batmass.io.thermo.ThermoGrpcServerProcess - Batmass-IO Thermo server (1.3.0.0) By Nesvizhskii Lab, University of Michigan D:\JAM\Sylvain\S22049-Arjun-112.raw: Scans = 108797 D:\JAM\Sylvain\S22049-Arjun-2.raw: Scans = 122572 D:\JAM\Sylvain\S22049-Arjun-76.raw: Scans = 113036 D:\JAM\Sylvain\S22049-Arjun-94.raw: Scans = 113429 D:\JAM\Sylvain\S22049-Arjun-131.raw: Scans = 111919 D:\JAM\Sylvain\S22049-Arjun-57.raw: Scans = 122546 D:\JAM\Sylvain\S22049-Arjun-39.raw: Scans = 115915 D:\JAM\Sylvain\S22049-Arjun-113.raw: Scans = 111952 D:\JAM\Sylvain\S22049-Arjun-20.raw: Scans = 119465 D:\JAM\Sylvain\S22049-Arjun-4.raw: Scans = 121321 D:\JAM\Sylvain\S22049-Arjun-95.raw: Scans = 113750 D:\JAM\Sylvain\S22049-Arjun-58-2nd.raw: Scans = 111716 D:\JAM\Sylvain\S22049-Arjun-114.raw: Scans = 116803 D:\JAM\Sylvain\S22049-Arjun-77.raw: Scans = 115739 D:\JAM\Sylvain\S22049-Arjun-132.raw: Scans = 111786 D:\JAM\Sylvain\S22049-Arjun-21.raw: Scans = 120455 D:\JAM\Sylvain\S22049-Arjun-115.raw: Scans = 115673 D:\JAM\Sylvain\S22049-Arjun-133.raw: Scans = 112911 D:\JAM\Sylvain\S22049-Arjun-78.raw: Scans = 113290 D:\JAM\Sylvain\S22049-Arjun-96.raw: Scans = 113521 D:\JAM\Sylvain\S22049-Arjun-59-2nd.raw: Scans = 113831 D:\JAM\Sylvain\S22049-Arjun-40.raw: Scans = 119610 D:\JAM\Sylvain\S22049-Arjun-22.raw: Scans = 116460 D:\JAM\Sylvain\S22049-Arjun-41.raw: Scans = 121302 D:\JAM\Sylvain\S22049-Arjun-116.raw: Scans = 115616 D:\JAM\Sylvain\S22049-Arjun-134.raw: Scans = 103649 D:\JAM\Sylvain\S22049-Arjun-79.raw: Scans = 113916 D:\JAM\Sylvain\S22049-Arjun-97.raw: Scans = 113505 D:\JAM\Sylvain\S22049-Arjun-6.raw: Scans = 120678 D:\JAM\Sylvain\S22049-Arjun-23.raw: Scans = 117112 D:\JAM\Sylvain\S22049-Arjun-135.raw: Scans = 100502 D:\JAM\Sylvain\S22049-Arjun-60-2nd.raw: Scans = 110376 D:\JAM\Sylvain\S22049-Arjun-42.raw: Scans = 120412 D:\JAM\Sylvain\S22049-Arjun-98.raw: Scans = 110829 D:\JAM\Sylvain\S22049-Arjun-8.raw: Scans = 123247 D:\JAM\Sylvain\S22049-Arjun-24.raw: Scans = 120117 D:\JAM\Sylvain\S22049-Arjun-99.raw: Scans = 112782 D:\JAM\Sylvain\S22049-Arjun-61-2nd.raw: Scans = 110663 ***********************************FIRST SEARCH************************************ Parameters: num_threads = 7 database_name = D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas decoy_prefix = rev_ precursor_mass_lower = -20.0 precursor_mass_upper = 20.0 precursor_mass_units = 1 data_type = 0 precursor_true_tolerance = 20.0 precursor_true_units = 1 fragment_mass_tolerance = 20.0 fragment_mass_units = 1 calibrate_mass = 2 use_all_mods_in_first_search = false write_calibrated_mzml = 0 write_uncalibrated_mgf = false isotope_error = 0/1 mass_offsets = 0 labile_search_mode = OFF restrict_deltamass_to = all precursor_mass_mode = SELECTED localize_delta_mass = false delta_mass_exclude_ranges = (-1.5,3.5) fragment_ion_series = b,y ion_series_definitions = search_enzyme_name = stricttrypsin search_enzyme_sense_1 = C search_enzyme_cut_1 = KR search_enzyme_nocut_1 = allowed_missed_cleavage_1 = 2 num_enzyme_termini = 2 clip_nTerm_M = true allow_multiple_variable_mods_on_residue = false max_variable_mods_per_peptide = 3 max_variable_mods_combinations = 5000 output_format = pepxml_pin output_report_topN = 1 output_max_expect = 50.0 report_alternative_proteins = false override_charge = false precursor_charge_low = 1 precursor_charge_high = 4 digest_min_length = 7 digest_max_length = 50 digest_mass_range_low = 500.0 digest_mass_range_high = 5000.0 max_fragment_charge = 1 deisotope = 1 deneutralloss = true track_zero_topN = 0 zero_bin_accept_expect = 0.0 zero_bin_mult_expect = 1.0 add_topN_complementary = 0 minimum_peaks = 15 use_topN_peaks = 150 minIonsScoring = 2 min_matched_fragments = 4 minimum_ratio = 0.01 intensity_transform = 0 activation_types = all remove_precursor_peak = 1 remove_precursor_range = -1.500000,1.500000 clear_mz_range_low = 0.0 clear_mz_range_high = 0.0 excluded_scan_list_file = mass_diff_to_variable_mod = 0 min_sequence_matches = 2 check_spectral_files = true variable_mod_01 = 15.9949 M 3 variable_mod_02 = 42.0106 [^ 1 add_A_alanine = 0.0 add_B_user_amino_acid = 0.0 add_C_cysteine = 57.02146 add_Cterm_peptide = 0.0 add_Cterm_protein = 0.0 add_D_aspartic_acid = 0.0 add_E_glutamic_acid = 0.0 add_F_phenylalanine = 0.0 add_G_glycine = 0.0 add_H_histidine = 0.0 add_I_isoleucine = 0.0 add_J_user_amino_acid = 0.0 add_K_lysine = 0.0 add_L_leucine = 0.0 add_M_methionine = 0.0 add_N_asparagine = 0.0 add_Nterm_peptide = 0.0 add_Nterm_protein = 0.0 add_O_user_amino_acid = 0.0 # O = pyrrolysine (237.14773 Da) add_P_proline = 0.0 add_Q_glutamine = 0.0 add_R_arginine = 0.0 add_S_serine = 0.0 add_T_threonine = 0.0 add_U_user_amino_acid = 0.0 # U = selenocysteine (150.95363 Da) add_V_valine = 0.0 add_W_tryptophan = 0.0 add_X_user_amino_acid = 0.0 add_Y_tyrosine = 0.0 add_Z_user_amino_acid = 0.0 Selected fragment index width 0.10 Da. 23312486 fragments to be searched in 1 slices (0.35 GB total) Operating on slice 1 of 1: Fragment index slice generated in 0.87 s 001. S22049-Arjun-1.raw 41.3 s | deisotoping 1.3 s [progress: 95238/95238 (100%) - 51039 spectra/s] 1.9s | postprocessing 0.4 s 002. S22049-Arjun-10.raw 36.9 s | deisotoping 0.1 s [progress: 91134/91134 (100%) - 78972 spectra/s] 1.2s | postprocessing 0.2 s 003. S22049-Arjun-100.raw 38.4 s | deisotoping 0.2 s [progress: 97978/97978 (100%) - 65188 spectra/s] 1.5s | postprocessing 0.1 s 004. S22049-Arjun-101.raw 38.0 s | deisotoping 0.2 s [progress: 99186/99186 (100%) - 44220 spectra/s] 2.2s | postprocessing 0.1 s 005. S22049-Arjun-102.raw 31.3 s | deisotoping 0.0 s [progress: 77569/77569 (100%) - 69756 spectra/s] 1.1s | postprocessing 0.2 s 006. S22049-Arjun-103.raw 39.1 s | deisotoping 0.2 s [progress: 99321/99321 (100%) - 61196 spectra/s] 1.6s | postprocessing 0.2 s 007. S22049-Arjun-104.raw 36.2 s | deisotoping 0.1 s [progress: 98190/98190 (100%) - 66121 spectra/s] 1.5s | postprocessing 0.1 s 008. S22049-Arjun-105.raw 38.8 s | deisotoping 0.2 s [progress: 100221/100221 (100%) - 65719 spectra/s] 1.5s | postprocessing 0.1 s 009. S22049-Arjun-106.raw 37.9 s | deisotoping 0.2 s [progress: 100812/100812 (100%) - 69430 spectra/s] 1.5s | postprocessing 0.1 s 010. S22049-Arjun-107.raw 34.6 s | deisotoping 0.1 s [progress: 88445/88445 (100%) - 82891 spectra/s] 1.1s | postprocessing 0.1 s 011. S22049-Arjun-108.raw 36.0 s | deisotoping 0.1 s [progress: 95962/95962 (100%) - 73030 spectra/s] 1.3s | postprocessing 0.1 s 012. S22049-Arjun-109.raw 36.9 s | deisotoping 0.1 s [progress: 94432/94432 (100%) - 73033 spectra/s] 1.3s | postprocessing 0.1 s 013. S22049-Arjun-11.raw 43.2 s | deisotoping 0.3 s [progress: 103360/103360 (100%) - 50248 spectra/s] 2.1s | postprocessing 0.2 s 014. S22049-Arjun-110.raw 35.5 s | deisotoping 0.1 s [progress: 85404/85404 (100%) - 81726 spectra/s] 1.0s | postprocessing 0.1 s 015. S22049-Arjun-111.raw 37.5 s | deisotoping 0.1 s [progress: 95375/95375 (100%) - 65640 spectra/s] 1.5s | postprocessing 0.1 s 016. S22049-Arjun-112.raw 34.2 s | deisotoping 0.1 s [progress: 84376/84376 (100%) - 71993 spectra/s] 1.2s | postprocessing 0.1 s 017. S22049-Arjun-113.raw 35.1 s | deisotoping 0.1 s [progress: 87732/87732 (100%) - 78053 spectra/s] 1.1s | postprocessing 0.1 s 018. S22049-Arjun-114.raw 35.2 s | deisotoping 0.1 s [progress: 86580/86580 (100%) - 81220 spectra/s] 1.1s | postprocessing 0.1 s 019. S22049-Arjun-115.raw 37.4 s | deisotoping 0.2 s [progress: 93527/93527 (100%) - 66425 spectra/s] 1.4s | postprocessing 0.1 s 020. S22049-Arjun-116.raw 79.9 s | deisotoping 0.1 s [progress: 88085/88085 (100%) - 79643 spectra/s] 1.1s | postprocessing 0.1 s 021. S22049-Arjun-117.raw 36.4 s | deisotoping 0.1 s [progress: 92119/92119 (100%) - 70535 spectra/s] 1.3s | postprocessing 0.2 s 022. S22049-Arjun-118.raw 33.9 s | deisotoping 0.1 s [progress: 88304/88304 (100%) - 79769 spectra/s] 1.1s | postprocessing 0.1 s 023. S22049-Arjun-119.raw 37.2 s | deisotoping 0.1 s [progress: 90926/90926 (100%) - 70650 spectra/s] 1.3s | postprocessing 0.1 s 024. S22049-Arjun-12.raw 41.1 s | deisotoping 0.2 s [progress: 102003/102003 (100%) - 58927 spectra/s] 1.7s | postprocessing 0.1 s 025. S22049-Arjun-120.raw 36.0 s | deisotoping 0.2 s [progress: 89566/89566 (100%) - 77212 spectra/s] 1.2s | postprocessing 0.1 s 026. S22049-Arjun-121.raw 37.9 s | deisotoping 0.1 s [progress: 92068/92068 (100%) - 70388 spectra/s] 1.3s | postprocessing 0.1 s 027. S22049-Arjun-122.raw 36.5 s | deisotoping 0.1 s [progress: 90361/90361 (100%) - 76968 spectra/s] 1.2s | postprocessing 0.1 s 028. S22049-Arjun-123.raw 36.8 s | deisotoping 0.2 s [progress: 94998/94998 (100%) - 66386 spectra/s] 1.4s | postprocessing 0.1 s 029. S22049-Arjun-125.raw 39.0 s | deisotoping 0.2 s [progress: 98417/98417 (100%) - 66140 spectra/s] 1.5s | postprocessing 0.1 s 030. S22049-Arjun-126.raw 76.0 s | deisotoping 0.1 s [progress: 89857/89857 (100%) - 74818 spectra/s] 1.2s | postprocessing 0.1 s 031. S22049-Arjun-127.raw 34.3 s | deisotoping 0.1 s [progress: 88885/88885 (100%) - 75454 spectra/s] 1.2s | postprocessing 0.1 s 032. S22049-Arjun-128.raw 35.1 s | deisotoping 0.1 s [progress: 89412/89412 (100%) - 73894 spectra/s] 1.2s | postprocessing 0.1 s 033. S22049-Arjun-129.raw 32.8 s | deisotoping 0.1 s [progress: 81201/81201 (100%) - 82858 spectra/s] 1.0s | postprocessing 0.1 s 034. S22049-Arjun-13.raw 36.7 s | deisotoping 0.1 s [progress: 96667/96667 (100%) - 66165 spectra/s] 1.5s | postprocessing 0.1 s 035. S22049-Arjun-130.raw 38.2 s | deisotoping 0.2 s [progress: 94610/94610 (100%) - 67918 spectra/s] 1.4s | postprocessing 0.2 s 036. S22049-Arjun-131.raw 36.8 s | deisotoping 0.1 s [progress: 92882/92882 (100%) - 70312 spectra/s] 1.3s | postprocessing 0.1 s 037. S22049-Arjun-132.raw 38.0 s | deisotoping 0.2 s [progress: 96808/96808 (100%) - 60505 spectra/s] 1.6s | postprocessing 0.2 s 038. S22049-Arjun-133.raw 36.3 s | deisotoping 0.1 s [progress: 94282/94282 (100%) - 66678 spectra/s] 1.4s | postprocessing 0.1 s 039. S22049-Arjun-134.raw 24.2 s | deisotoping 0.0 s [progress: 42397/42397 (100%) - 128476 spectra/s] 0.3s | postprocessing 0.0 s 040. S22049-Arjun-135.raw 24.5 s | deisotoping 0.0 s [progress: 41079/41079 (100%) - 95533 spectra/s] 0.4s | postprocessing 0.0 s 041. S22049-Arjun-136.raw 42.1 s | deisotoping 0.1 s [progress: 93385/93385 (100%) - 73764 spectra/s] 1.3s | postprocessing 0.1 s 042. S22049-Arjun-137.raw 33.2 s | deisotoping 0.1 s [progress: 83761/83761 (100%) - 80539 spectra/s] 1.0s | postprocessing 0.1 s 043. S22049-Arjun-138.raw 36.6 s | deisotoping 0.2 s [progress: 95558/95558 (100%) - 64306 spectra/s] 1.5s | postprocessing 0.1 s 044. S22049-Arjun-139.raw 36.5 s | deisotoping 0.1 s [progress: 89877/89877 (100%) - 77148 spectra/s] 1.2s | postprocessing 0.1 s 045. S22049-Arjun-14.raw 37.3 s | deisotoping 0.1 s [progress: 94195/94195 (100%) - 70453 spectra/s] 1.3s | postprocessing 0.1 s 046. S22049-Arjun-140.raw 37.5 s | deisotoping 0.2 s [progress: 94865/94865 (100%) - 70375 spectra/s] 1.3s | postprocessing 0.2 s 047. S22049-Arjun-141.raw 35.8 s | deisotoping 0.2 s [progress: 95856/95856 (100%) - 65297 spectra/s] 1.5s | postprocessing 0.1 s 048. S22049-Arjun-142.raw 36.9 s | deisotoping 0.2 s [progress: 94156/94156 (100%) - 69283 spectra/s] 1.4s | postprocessing 0.2 s 049. S22049-Arjun-143.raw 35.2 s | deisotoping 0.2 s [progress: 84161/84161 (100%) - 73183 spectra/s] 1.2s | postprocessing 0.1 s 050. S22049-Arjun-144.raw 34.4 s | deisotoping 0.1 s [progress: 84010/84010 (100%) - 79933 spectra/s] 1.1s | postprocessing 0.1 s 051. S22049-Arjun-15.raw 42.1 s | deisotoping 0.2 s [progress: 102243/102243 (100%) - 54442 spectra/s] 1.9s | postprocessing 0.2 s 052. S22049-Arjun-16.raw 42.5 s | deisotoping 0.3 s [progress: 103093/103093 (100%) - 52598 spectra/s] 2.0s | postprocessing 0.2 s 053. S22049-Arjun-17.raw 117.9 s | deisotoping 0.1 s [progress: 93556/93556 (100%) - 75631 spectra/s] 1.2s | postprocessing 0.1 s 054. S22049-Arjun-18.raw 40.2 s | deisotoping 0.2 s [progress: 100024/100024 (100%) - 63346 spectra/s] 1.6s | postprocessing 0.1 s 055. S22049-Arjun-19.raw 42.5 s | deisotoping 0.2 s [progress: 103724/103724 (100%) - 54563 spectra/s] 1.9s | postprocessing 0.2 s 056. S22049-Arjun-2.raw 42.1 s | deisotoping 0.2 s [progress: 104446/104446 (100%) - 52618 spectra/s] 2.0s | postprocessing 0.1 s 057. 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S22049-Arjun-97.raw 33.7 s | deisotoping 0.1 s [progress: 89221/89221 (100%) - 76782 spectra/s] 1.2s | postprocessing 0.1 s 142. S22049-Arjun-98.raw 35.6 s | deisotoping 0.1 s [progress: 95307/95307 (100%) - 73996 spectra/s] 1.3s | postprocessing 0.1 s 143. S22049-Arjun-99.raw 34.9 s | deisotoping 0.1 s [progress: 93240/93240 (100%) - 73417 spectra/s] 1.3s | postprocessing 0.1 s ***************************FIRST SEARCH DONE IN 120.613 MIN************************** *********************MASS CALIBRATION AND PARAMETER OPTIMIZATION******************* -----|---------------|---------------|---------------|--------------- | MS1 (Old) | MS1 (New) | MS2 (Old) | MS2 (New) -----|---------------|---------------|---------------|--------------- Run | Median MAD | Median MAD | Median MAD | Median MAD 001 | 1.99 2.11 | -0.01 0.84 | 1.83 3.24 | -0.17 2.54 002 | 0.05 1.55 | -0.02 1.01 | -0.11 2.89 | -0.18 2.67 003 | -0.49 1.13 | -0.06 0.78 | -0.72 2.81 | -0.28 2.76 004 | -0.19 1.19 | -0.04 0.72 | -0.40 2.87 | -0.29 2.76 005 | 0.00 1.07 | -0.02 0.92 | -0.21 2.51 | -0.30 2.43 006 | 0.83 1.46 | -0.05 0.81 | 0.61 2.98 | -0.22 2.73 007 | 0.19 1.32 | -0.05 0.77 | 0.02 2.83 | -0.23 2.71 008 | -0.41 1.46 | -0.04 0.81 | -0.56 2.96 | -0.26 2.83 009 | 0.01 1.33 | -0.05 0.88 | -0.17 2.93 | -0.27 2.86 010 | 0.02 1.25 | -0.03 0.84 | -0.24 2.93 | -0.23 2.90 011 | -0.33 1.36 | -0.06 0.82 | -0.52 2.86 | -0.26 2.77 012 | 0.22 1.30 | -0.04 0.81 | -0.01 2.89 | -0.24 2.76 013 | 3.22 1.28 | -0.01 0.69 | 3.04 2.55 | -0.12 2.39 014 | 0.17 1.16 | -0.04 0.77 | -0.09 2.83 | -0.25 2.77 015 | 1.25 1.57 | -0.03 0.77 | 1.03 2.95 | -0.20 2.61 016 | -0.29 1.01 | -0.08 0.70 | -0.52 2.75 | -0.29 2.72 017 | 0.31 1.18 | -0.04 0.72 | 0.06 2.79 | -0.24 2.69 018 | 0.37 1.11 | -0.05 0.70 | 0.18 2.67 | -0.24 2.59 019 | -1.08 1.20 | -0.06 0.74 | -1.26 2.66 | -0.29 2.59 020 | 0.00 1.23 | -0.04 0.73 | -0.25 2.76 | -0.23 2.61 021 | -0.53 1.17 | -0.03 0.71 | -0.72 2.61 | -0.24 2.56 022 | 0.08 1.20 | -0.06 0.75 | -0.15 2.57 | -0.24 2.47 023 | -0.53 1.20 | -0.06 0.70 | -0.73 2.60 | -0.23 2.53 024 | 1.48 1.59 | -0.05 0.80 | 1.19 2.97 | -0.17 2.54 025 | 0.14 1.27 | -0.01 0.70 | -0.05 2.67 | -0.23 2.54 026 | 0.37 1.38 | -0.02 0.78 | 0.18 2.78 | -0.20 2.58 027 | -0.15 1.10 | -0.06 0.73 | -0.37 2.60 | -0.24 2.57 028 | -0.76 1.19 | -0.08 0.75 | -0.87 2.61 | -0.27 2.54 029 | -0.39 1.11 | -0.07 0.74 | -0.55 2.58 | -0.24 2.54 030 | 0.31 1.25 | -0.05 0.77 | 0.11 2.73 | -0.23 2.63 031 | 0.70 1.46 | -0.02 0.80 | 0.52 2.85 | -0.20 2.65 032 | -1.25 1.60 | -0.06 0.74 | -1.32 2.85 | -0.29 2.58 033 | -0.17 1.54 | -0.07 0.97 | -0.46 3.04 | -0.25 2.73 034 | 0.50 1.30 | -0.03 0.76 | 0.32 2.64 | -0.21 2.49 035 | -0.43 1.12 | -0.06 0.71 | -0.60 2.61 | -0.25 2.57 036 | 0.61 1.49 | -0.06 0.75 | 0.45 2.87 | -0.21 2.65 037 | -1.12 1.40 | -0.04 0.77 | -1.17 2.81 | -0.26 2.67 038 | -0.06 1.18 | -0.02 0.77 | -0.27 2.72 | -0.23 2.68 039 | -0.05 0.58 | -0.01 0.73 | -0.35 2.33 | -0.22 2.30 040 | -0.42 1.58 | 0.05 1.26 | -0.60 2.68 | -0.30 2.63 041 | 0.52 1.36 | -0.06 0.75 | 0.31 2.75 | -0.19 2.53 042 | -0.03 1.29 | -0.01 0.86 | -0.26 2.78 | -0.20 2.73 043 | -0.25 1.22 | -0.07 0.82 | -0.44 2.66 | -0.23 2.63 044 | 0.36 1.28 | -0.04 0.74 | 0.12 2.68 | -0.23 2.52 045 | -0.38 1.17 | -0.03 0.75 | -0.63 2.50 | -0.22 2.46 046 | -0.22 1.24 | -0.06 0.74 | -0.42 2.62 | -0.26 2.50 047 | 0.93 1.13 | -0.01 0.73 | 0.75 2.69 | -0.20 2.57 048 | -0.24 1.19 | -0.02 0.80 | -0.45 2.70 | -0.24 2.64 049 | -0.17 1.62 | 0.08 1.02 | -0.50 3.13 | -0.07 3.02 050 | -0.18 1.45 | 0.01 0.95 | -0.50 2.98 | -0.18 2.92 051 | 0.74 1.32 | -0.07 0.76 | 0.50 2.65 | -0.19 2.40 052 | -0.46 1.05 | -0.06 0.70 | -0.64 2.39 | -0.22 2.36 053 | -0.15 1.10 | -0.03 0.83 | -0.41 2.48 | -0.22 2.42 054 | 0.31 1.19 | -0.02 0.70 | 0.10 2.44 | -0.22 2.35 055 | 0.74 1.33 | -0.07 0.76 | 0.59 2.58 | -0.18 2.40 056 | 0.13 1.21 | -0.03 0.72 | -0.06 2.52 | -0.21 2.44 057 | -0.52 1.08 | -0.09 0.71 | -0.69 2.40 | -0.23 2.36 058 | -0.46 1.23 | -0.10 0.80 | -0.65 2.63 | -0.25 2.54 059 | 0.97 1.74 | -0.02 0.80 | 0.82 2.98 | -0.19 2.52 060 | 1.98 1.12 | -0.03 0.70 | 1.81 2.51 | -0.15 2.42 061 | 0.78 1.15 | -0.04 0.72 | 0.60 2.49 | -0.21 2.42 062 | 0.20 1.58 | -0.04 1.07 | 0.10 3.13 | -0.19 3.00 063 | 0.17 1.52 | -0.01 0.92 | 0.01 2.66 | -0.19 2.46 064 | -1.11 1.09 | -0.07 0.70 | -1.23 2.49 | -0.27 2.42 065 | 0.02 1.14 | -0.07 0.69 | -0.12 2.51 | -0.25 2.45 066 | 0.91 1.43 | -0.07 0.74 | 0.85 2.66 | -0.19 2.46 067 | 0.05 1.18 | -0.06 0.75 | -0.19 2.59 | -0.22 2.48 068 | 0.12 1.44 | -0.05 0.81 | -0.04 2.68 | -0.20 2.49 069 | -0.19 1.38 | -0.01 0.90 | -0.49 2.81 | -0.18 2.75 070 | -0.10 1.60 | -0.02 1.05 | -0.38 3.08 | -0.20 3.05 071 | -0.16 1.31 | -0.04 0.84 | -0.40 2.68 | -0.20 2.59 072 | -0.38 1.31 | -0.03 0.82 | -0.56 2.59 | -0.19 2.55 073 | -0.05 1.62 | -0.01 1.06 | -0.32 2.91 | -0.20 2.86 074 | -0.21 1.40 | -0.14 0.98 | -0.39 2.89 | -0.26 2.79 075 | 0.53 1.17 | -0.04 0.71 | 0.36 2.50 | -0.21 2.43 076 | 0.62 1.27 | -0.05 0.85 | 0.42 2.68 | -0.17 2.58 077 | 0.89 1.85 | -0.03 0.78 | 0.70 3.12 | -0.25 2.66 078 | 0.27 1.23 | -0.06 0.75 | 0.04 2.55 | -0.19 2.44 079 | -0.06 1.16 | -0.06 0.69 | -0.28 2.76 | -0.23 2.68 080 | 0.20 1.38 | -0.07 0.81 | -0.12 2.92 | -0.20 2.64 081 | -1.22 1.26 | -0.09 0.76 | -1.35 2.68 | -0.23 2.54 082 | 1.52 1.38 | -0.03 0.80 | 1.21 2.88 | -0.13 2.62 083 | 0.10 1.18 | -0.08 0.74 | -0.17 2.65 | -0.20 2.57 084 | -0.41 1.15 | -0.06 0.76 | -0.66 2.58 | -0.24 2.53 085 | 0.35 1.26 | -0.05 0.73 | 0.07 2.70 | -0.20 2.56 086 | -0.00 1.22 | -0.07 0.78 | -0.27 2.72 | -0.22 2.59 087 | 1.29 2.00 | -0.02 0.82 | 1.05 3.17 | -0.18 2.57 088 | 0.86 1.46 | -0.05 0.79 | 0.59 2.88 | -0.18 2.60 089 | 0.36 1.53 | -0.02 0.80 | 0.27 2.81 | -0.18 2.62 090 | -0.88 1.14 | -0.06 0.75 | -1.09 2.56 | -0.27 2.49 091 | -0.63 1.05 | -0.07 0.72 | -0.85 2.56 | -0.25 2.51 092 | 0.35 1.19 | -0.08 0.75 | 0.13 2.63 | -0.24 2.54 093 | 0.56 1.10 | -0.04 0.71 | 0.32 2.57 | -0.21 2.48 094 | 1.18 1.18 | -0.05 0.74 | 0.90 2.65 | -0.20 2.56 095 | 1.64 1.20 | -0.03 0.78 | 1.34 2.74 | -0.19 2.59 096 | 0.39 1.08 | -0.02 0.68 | 0.15 2.61 | -0.23 2.55 097 | 0.27 1.12 | -0.04 0.73 | 0.01 2.69 | -0.22 2.62 098 | 3.08 2.12 | -0.03 0.83 | 2.76 3.51 | -0.12 2.70 099 | -0.19 1.07 | -0.04 0.73 | -0.33 2.57 | -0.24 2.53 100 | 0.35 1.51 | 0.02 0.84 | 0.24 2.74 | -0.19 2.51 101 | 0.14 1.23 | -0.06 0.78 | 0.04 2.61 | -0.23 2.52 102 | 0.06 1.13 | -0.03 0.78 | -0.13 2.62 | -0.20 2.56 103 | -1.01 1.26 | -0.08 0.76 | -1.06 2.57 | -0.28 2.46 104 | -0.26 1.19 | -0.06 0.74 | -0.33 2.59 | -0.26 2.52 105 | 0.33 1.24 | -0.04 0.79 | 0.17 2.66 | -0.23 2.54 106 | 1.11 1.64 | -0.01 0.83 | 0.94 3.00 | -0.18 2.63 107 | -0.06 1.32 | -0.04 0.85 | -0.19 2.70 | -0.22 2.58 108 | 0.23 1.35 | -0.02 0.85 | 0.11 2.77 | -0.20 2.68 109 | -0.54 1.16 | -0.06 0.78 | -0.60 2.59 | -0.24 2.55 110 | 0.31 1.63 | -0.05 0.86 | 0.20 2.94 | -0.18 2.66 111 | 0.46 1.18 | -0.05 0.73 | 0.26 2.55 | -0.19 2.43 112 | 0.10 1.41 | -0.07 0.82 | -0.05 2.73 | -0.22 2.59 113 | 0.10 1.34 | -0.04 0.82 | -0.06 2.70 | -0.22 2.53 114 | 0.02 1.16 | -0.05 0.78 | -0.09 2.62 | -0.22 2.54 115 | 1.25 1.95 | -0.02 0.86 | 1.09 3.37 | -0.22 2.90 116 | -0.08 1.18 | -0.06 0.82 | -0.25 2.84 | -0.23 2.80 117 | 1.11 1.82 | -0.02 0.86 | 0.95 3.20 | -0.19 2.81 118 | 0.08 1.21 | -0.07 0.78 | -0.07 2.78 | -0.21 2.68 119 | -0.11 1.18 | -0.04 0.79 | -0.33 2.78 | -0.21 2.73 120 | 0.69 2.12 | -0.04 0.88 | 0.73 3.26 | -0.14 2.77 121 | -0.04 1.36 | -0.01 0.91 | -0.23 2.86 | -0.15 2.79 122 | -0.62 1.13 | -0.06 0.74 | -0.80 2.45 | -0.24 2.40 123 | -0.04 1.28 | -0.03 0.81 | -0.20 2.82 | -0.18 2.77 124 | -0.23 1.25 | 0.00 0.84 | -0.42 2.73 | -0.20 2.68 125 | 0.10 1.18 | -0.05 0.76 | -0.13 2.75 | -0.19 2.69 126 | 0.17 1.53 | -0.03 0.92 | 0.04 2.93 | -0.19 2.84 127 | -0.36 1.11 | -0.08 0.74 | -0.59 2.62 | -0.24 2.57 128 | -0.17 1.22 | -0.05 0.79 | -0.37 2.72 | -0.23 2.64 129 | -0.24 1.11 | -0.06 0.74 | -0.45 2.66 | -0.23 2.62 130 | -0.07 1.15 | -0.03 0.76 | -0.32 2.71 | -0.23 2.65 131 | 0.24 1.20 | -0.04 0.75 | 0.02 2.70 | -0.21 2.63 132 | -0.50 1.15 | -0.04 0.76 | -0.72 2.68 | -0.24 2.63 133 | 0.19 1.19 | -0.02 0.77 | -0.05 2.63 | -0.20 2.57 134 | 0.66 1.28 | -0.04 0.73 | 0.38 2.79 | -0.19 2.63 135 | -0.23 1.17 | -0.04 0.76 | -0.47 2.75 | -0.25 2.71 136 | 0.12 1.31 | -0.05 0.78 | -0.11 2.82 | -0.20 2.72 137 | -0.08 1.16 | -0.04 0.73 | -0.27 2.78 | -0.24 2.74 138 | 0.16 1.20 | -0.02 0.80 | -0.07 2.79 | -0.23 2.70 139 | -1.87 1.68 | -0.07 0.78 | -1.80 3.04 | -0.30 2.70 140 | -1.08 1.22 | -0.02 0.79 | -1.27 2.74 | -0.28 2.67 141 | -0.10 1.01 | -0.13 0.76 | -0.42 2.42 | -0.25 2.39 142 | -0.07 1.16 | -0.06 0.75 | -0.28 2.76 | -0.27 2.69 143 | 0.12 1.28 | -0.04 0.84 | -0.13 2.98 | -0.25 2.87 -----|---------------|---------------|---------------|--------------- Finding the optimal parameters: -------|-------|-------|-------|-------|-------|-------|-------|------- MS2 | 5 | 7 | 10 | 15 | 20 | 25 | 30 | 50 -------|-------|-------|-------|-------|-------|-------|-------|------- Count | 61514| 63401| 64652| 65211| 65109| skip rest -------|-------|-------|-------|-------|-------|-------|-------|------- -------|-------|-------|-------|-------|-------|------- Peaks | 300_0 | 200_0 | 175_0 | 150_1 | 125_1 | 100_1 -------|-------|-------|-------|-------|-------|------- Count | 65682| 65656| skip rest -------|-------|-------|-------|-------|-------|------- -------|------- Int. | 1 -------|------- Count | 66294 -------|------- -------|------- Rm P. | 0 -------|------- Count | 66280 -------|------- New fragment_mass_tolerance = 15 PPM New use_topN_peaks = 300 New minimum_ratio = 0.000000 New intensity_transform = 1 New remove_precursor_peak = 1 ************MASS CALIBRATION AND PARAMETER OPTIMIZATION DONE IN 65.354 MIN********* ************************************MAIN SEARCH************************************ Checking database... Parameters: num_threads = 7 database_name = D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas decoy_prefix = rev_ precursor_mass_lower = -20.0 precursor_mass_upper = 20.0 precursor_mass_units = 1 data_type = 0 precursor_true_tolerance = 20.0 precursor_true_units = 1 fragment_mass_tolerance = 15.0 fragment_mass_units = 1 calibrate_mass = 2 use_all_mods_in_first_search = false write_calibrated_mzml = 0 write_uncalibrated_mgf = false isotope_error = 0/1/2 mass_offsets = 0.0 labile_search_mode = OFF restrict_deltamass_to = all precursor_mass_mode = SELECTED localize_delta_mass = false delta_mass_exclude_ranges = (-1.5,3.5) fragment_ion_series = b,y ion_series_definitions = search_enzyme_name = stricttrypsin search_enzyme_sense_1 = C search_enzyme_cut_1 = KR search_enzyme_nocut_1 = allowed_missed_cleavage_1 = 2 num_enzyme_termini = 2 clip_nTerm_M = true allow_multiple_variable_mods_on_residue = false max_variable_mods_per_peptide = 3 max_variable_mods_combinations = 5000 output_format = pepxml_pin output_report_topN = 1 output_max_expect = 50.0 report_alternative_proteins = true override_charge = false precursor_charge_low = 1 precursor_charge_high = 4 digest_min_length = 7 digest_max_length = 50 digest_mass_range_low = 500.0 digest_mass_range_high = 5000.0 max_fragment_charge = 1 deisotope = 1 deneutralloss = true track_zero_topN = 0 zero_bin_accept_expect = 0.0 zero_bin_mult_expect = 1.0 add_topN_complementary = 0 minimum_peaks = 15 use_topN_peaks = 300 minIonsScoring = 2 min_matched_fragments = 4 minimum_ratio = 0.0 intensity_transform = 1 activation_types = all remove_precursor_peak = 1 remove_precursor_range = -1.500000,1.500000 clear_mz_range_low = 0.0 clear_mz_range_high = 0.0 excluded_scan_list_file = mass_diff_to_variable_mod = 0 min_sequence_matches = 2 check_spectral_files = true variable_mod_01 = 15.9949 M 3 variable_mod_02 = 42.0106 [^ 1 add_A_alanine = 0.0 add_B_user_amino_acid = 0.0 add_C_cysteine = 57.02146 add_Cterm_peptide = 0.0 add_Cterm_protein = 0.0 add_D_aspartic_acid = 0.0 add_E_glutamic_acid = 0.0 add_F_phenylalanine = 0.0 add_G_glycine = 0.0 add_H_histidine = 0.0 add_I_isoleucine = 0.0 add_J_user_amino_acid = 0.0 add_K_lysine = 0.0 add_L_leucine = 0.0 add_M_methionine = 0.0 add_N_asparagine = 0.0 add_Nterm_peptide = 0.0 add_Nterm_protein = 0.0 add_O_user_amino_acid = 0.0 # O = pyrrolysine (237.14773 Da) add_P_proline = 0.0 add_Q_glutamine = 0.0 add_R_arginine = 0.0 add_S_serine = 0.0 add_T_threonine = 0.0 add_U_user_amino_acid = 0.0 # U = selenocysteine (150.95363 Da) add_V_valine = 0.0 add_W_tryptophan = 0.0 add_X_user_amino_acid = 0.0 add_Y_tyrosine = 0.0 add_Z_user_amino_acid = 0.0 Selected fragment index width 0.08 Da. 23312486 fragments to be searched in 1 slices (0.35 GB total) Operating on slice 1 of 1: Fragment index slice generated in 0.28 s 001. S22049-Arjun-1.mzBIN_calibrated 2.7 s [progress: 92087/92087 (100%) - 53821 spectra/s] 1.7s | remapping alternative proteins and postprocessing 5.9 s 002. S22049-Arjun-10.mzBIN_calibrated 2.3 s [progress: 87950/87950 (100%) - 72387 spectra/s] 1.2s | remapping alternative proteins and postprocessing 4.5 s 003. S22049-Arjun-100.mzBIN_calibrated 2.7 s [progress: 95175/95175 (100%) - 61010 spectra/s] 1.6s | remapping alternative proteins and postprocessing 3.7 s 004. S22049-Arjun-101.mzBIN_calibrated 2.6 s [progress: 96554/96554 (100%) - 61814 spectra/s] 1.6s | remapping alternative proteins and postprocessing 3.6 s 005. S22049-Arjun-102.mzBIN_calibrated 1.9 s [progress: 73265/73265 (100%) - 93809 spectra/s] 0.8s | remapping alternative proteins and postprocessing 3.0 s 006. S22049-Arjun-103.mzBIN_calibrated 2.7 s [progress: 96829/96829 (100%) - 58472 spectra/s] 1.7s | remapping alternative proteins and postprocessing 3.5 s 007. S22049-Arjun-104.mzBIN_calibrated 2.6 s [progress: 95536/95536 (100%) - 60890 spectra/s] 1.6s | remapping alternative proteins and postprocessing 3.5 s 008. S22049-Arjun-105.mzBIN_calibrated 2.7 s [progress: 97824/97824 (100%) - 54834 spectra/s] 1.8s | remapping alternative proteins and postprocessing 3.5 s 009. S22049-Arjun-106.mzBIN_calibrated 2.6 s [progress: 98278/98278 (100%) - 63446 spectra/s] 1.5s | remapping alternative proteins and postprocessing 3.4 s 010. S22049-Arjun-107.mzBIN_calibrated 2.2 s [progress: 84537/84537 (100%) - 76992 spectra/s] 1.1s | remapping alternative proteins and postprocessing 2.8 s 011. S22049-Arjun-108.mzBIN_calibrated 2.5 s [progress: 92690/92690 (100%) - 68710 spectra/s] 1.3s | remapping alternative proteins and postprocessing 3.1 s 012. S22049-Arjun-109.mzBIN_calibrated 2.4 s [progress: 91094/91094 (100%) - 66638 spectra/s] 1.4s | remapping alternative proteins and postprocessing 3.1 s 013. S22049-Arjun-11.mzBIN_calibrated 3.8 s [progress: 102084/102084 (100%) - 43869 spectra/s] 2.3s | remapping alternative proteins and postprocessing 4.2 s 014. S22049-Arjun-110.mzBIN_calibrated 2.2 s [progress: 81514/81514 (100%) - 74306 spectra/s] 1.1s | remapping alternative proteins and postprocessing 2.6 s 015. S22049-Arjun-111.mzBIN_calibrated 2.5 s [progress: 92438/92438 (100%) - 63619 spectra/s] 1.5s | remapping alternative proteins and postprocessing 3.3 s 016. S22049-Arjun-112.mzBIN_calibrated 2.1 s [progress: 80301/80301 (100%) - 72539 spectra/s] 1.1s | remapping alternative proteins and postprocessing 2.7 s 017. S22049-Arjun-113.mzBIN_calibrated 2.2 s [progress: 83920/83920 (100%) - 69355 spectra/s] 1.2s | remapping alternative proteins and postprocessing 2.9 s 018. S22049-Arjun-114.mzBIN_calibrated 2.1 s [progress: 82826/82826 (100%) - 75296 spectra/s] 1.1s | remapping alternative proteins and postprocessing 3.0 s 019. S22049-Arjun-115.mzBIN_calibrated 2.7 s [progress: 90218/90218 (100%) - 62564 spectra/s] 1.4s | remapping alternative proteins and postprocessing 3.1 s 020. S22049-Arjun-116.mzBIN_calibrated 2.2 s [progress: 84088/84088 (100%) - 69265 spectra/s] 1.2s | remapping alternative proteins and postprocessing 2.8 s 021. S22049-Arjun-117.mzBIN_calibrated 2.4 s [progress: 88455/88455 (100%) - 65474 spectra/s] 1.4s | remapping alternative proteins and postprocessing 3.0 s 022. S22049-Arjun-118.mzBIN_calibrated 2.3 s [progress: 84686/84686 (100%) - 76917 spectra/s] 1.1s | remapping alternative proteins and postprocessing 2.9 s 023. S22049-Arjun-119.mzBIN_calibrated 2.8 s [progress: 87111/87111 (100%) - 65546 spectra/s] 1.3s | remapping alternative proteins and postprocessing 3.0 s 024. S22049-Arjun-12.mzBIN_calibrated 2.9 s [progress: 100173/100173 (100%) - 50112 spectra/s] 2.0s | remapping alternative proteins and postprocessing 3.9 s 025. S22049-Arjun-120.mzBIN_calibrated 2.4 s [progress: 85768/85768 (100%) - 70302 spectra/s] 1.2s | remapping alternative proteins and postprocessing 2.9 s 026. S22049-Arjun-121.mzBIN_calibrated 2.4 s [progress: 88592/88592 (100%) - 66212 spectra/s] 1.3s | remapping alternative proteins and postprocessing 3.2 s 027. S22049-Arjun-122.mzBIN_calibrated 2.3 s [progress: 86877/86877 (100%) - 70920 spectra/s] 1.2s | remapping alternative proteins and postprocessing 3.0 s 028. S22049-Arjun-123.mzBIN_calibrated 2.6 s [progress: 91967/91967 (100%) - 59372 spectra/s] 1.5s | remapping alternative proteins and postprocessing 3.3 s 029. S22049-Arjun-125.mzBIN_calibrated 3.0 s [progress: 95831/95831 (100%) - 56705 spectra/s] 1.7s | remapping alternative proteins and postprocessing 3.4 s 030. S22049-Arjun-126.mzBIN_calibrated 2.4 s [progress: 86410/86410 (100%) - 71354 spectra/s] 1.2s | remapping alternative proteins and postprocessing 2.8 s 031. S22049-Arjun-127.mzBIN_calibrated 2.2 s [progress: 85348/85348 (100%) - 70245 spectra/s] 1.2s | remapping alternative proteins and postprocessing 2.8 s 032. S22049-Arjun-128.mzBIN_calibrated 2.2 s [progress: 85997/85997 (100%) - 69803 spectra/s] 1.2s | remapping alternative proteins and postprocessing 3.0 s 033. S22049-Arjun-129.mzBIN_calibrated 2.0 s [progress: 77680/77680 (100%) - 85740 spectra/s] 0.9s | remapping alternative proteins and postprocessing 2.6 s 034. S22049-Arjun-13.mzBIN_calibrated 2.8 s [progress: 93810/93810 (100%) - 60797 spectra/s] 1.5s | remapping alternative proteins and postprocessing 3.4 s 035. S22049-Arjun-130.mzBIN_calibrated 2.7 s [progress: 91852/91852 (100%) - 59451 spectra/s] 1.5s | remapping alternative proteins and postprocessing 3.3 s 036. S22049-Arjun-131.mzBIN_calibrated 2.6 s [progress: 89511/89511 (100%) - 62117 spectra/s] 1.4s | remapping alternative proteins and postprocessing 3.1 s 037. 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S22049-Arjun-99.mzBIN_calibrated 2.0 s [progress: 89795/89795 (100%) - 67924 spectra/s] 1.3s | remapping alternative proteins and postprocessing 2.9 s ***************************MAIN SEARCH DONE IN 18.881 MIN*************************** *******************************TOTAL TIME 204.849 MIN******************************** Process 'MSFragger' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-1.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\S22049-Arjun-1.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-1.pin 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D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101\S22049-Arjun-101.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-101.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101\S22049-Arjun-101.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-102.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102\S22049-Arjun-102.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-102.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102\S22049-Arjun-102.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-103.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103\S22049-Arjun-103.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-103.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103\S22049-Arjun-103.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-104.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104\S22049-Arjun-104.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-104.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104\S22049-Arjun-104.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-105.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105\S22049-Arjun-105.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-105.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105\S22049-Arjun-105.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-106.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106\S22049-Arjun-106.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-106.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106\S22049-Arjun-106.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-107.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107\S22049-Arjun-107.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-107.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107\S22049-Arjun-107.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-108.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108\S22049-Arjun-108.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-108.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108\S22049-Arjun-108.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-109.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109\S22049-Arjun-109.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-109.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109\S22049-Arjun-109.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-11.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11\S22049-Arjun-11.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-11.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11\S22049-Arjun-11.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-110.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110\S22049-Arjun-110.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-110.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110\S22049-Arjun-110.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-111.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111\S22049-Arjun-111.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-111.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111\S22049-Arjun-111.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-112.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112\S22049-Arjun-112.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-112.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112\S22049-Arjun-112.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-113.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113\S22049-Arjun-113.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-113.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113\S22049-Arjun-113.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-114.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114\S22049-Arjun-114.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-114.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114\S22049-Arjun-114.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-115.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115\S22049-Arjun-115.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-115.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115\S22049-Arjun-115.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-116.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116\S22049-Arjun-116.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-116.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116\S22049-Arjun-116.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-117.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117\S22049-Arjun-117.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-117.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117\S22049-Arjun-117.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-118.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118\S22049-Arjun-118.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-118.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118\S22049-Arjun-118.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-119.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119\S22049-Arjun-119.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-119.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119\S22049-Arjun-119.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-12.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12\S22049-Arjun-12.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-12.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12\S22049-Arjun-12.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-120.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120\S22049-Arjun-120.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-120.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120\S22049-Arjun-120.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-121.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121\S22049-Arjun-121.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-121.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121\S22049-Arjun-121.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-122.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122\S22049-Arjun-122.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-122.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122\S22049-Arjun-122.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-123.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\S22049-Arjun-123.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-123.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\S22049-Arjun-123.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-125.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125\S22049-Arjun-125.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-125.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125\S22049-Arjun-125.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-126.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126\S22049-Arjun-126.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-126.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126\S22049-Arjun-126.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-127.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127\S22049-Arjun-127.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-127.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127\S22049-Arjun-127.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-128.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128\S22049-Arjun-128.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-128.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128\S22049-Arjun-128.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-129.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129\S22049-Arjun-129.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-129.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129\S22049-Arjun-129.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-13.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13\S22049-Arjun-13.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-13.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13\S22049-Arjun-13.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-130.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130\S22049-Arjun-130.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-130.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130\S22049-Arjun-130.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-131.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131\S22049-Arjun-131.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-131.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131\S22049-Arjun-131.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-132.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132\S22049-Arjun-132.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-132.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132\S22049-Arjun-132.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-133.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133\S22049-Arjun-133.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-133.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133\S22049-Arjun-133.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-134.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134\S22049-Arjun-134.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-134.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134\S22049-Arjun-134.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-135.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135\S22049-Arjun-135.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-135.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135\S22049-Arjun-135.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-136.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136\S22049-Arjun-136.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-136.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136\S22049-Arjun-136.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-137.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137\S22049-Arjun-137.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-137.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137\S22049-Arjun-137.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-138.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138\S22049-Arjun-138.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-138.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138\S22049-Arjun-138.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-139.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139\S22049-Arjun-139.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-139.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139\S22049-Arjun-139.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-14.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14\S22049-Arjun-14.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-14.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14\S22049-Arjun-14.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-140.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140\S22049-Arjun-140.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-140.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140\S22049-Arjun-140.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-141.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141\S22049-Arjun-141.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-141.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141\S22049-Arjun-141.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-142.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142\S22049-Arjun-142.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-142.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142\S22049-Arjun-142.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-143.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143\S22049-Arjun-143.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-143.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143\S22049-Arjun-143.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-144.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144\S22049-Arjun-144.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-144.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144\S22049-Arjun-144.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-15.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15\S22049-Arjun-15.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-15.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15\S22049-Arjun-15.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-16.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16\S22049-Arjun-16.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-16.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16\S22049-Arjun-16.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-17.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17\S22049-Arjun-17.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-17.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17\S22049-Arjun-17.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-18.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18\S22049-Arjun-18.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-18.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18\S22049-Arjun-18.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-19.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19\S22049-Arjun-19.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-19.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19\S22049-Arjun-19.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-2.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2\S22049-Arjun-2.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-2.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2\S22049-Arjun-2.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-20.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20\S22049-Arjun-20.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-20.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20\S22049-Arjun-20.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-21.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21\S22049-Arjun-21.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-21.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21\S22049-Arjun-21.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-22.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22\S22049-Arjun-22.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-22.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22\S22049-Arjun-22.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-23.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23\S22049-Arjun-23.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-23.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23\S22049-Arjun-23.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-24.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24\S22049-Arjun-24.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-24.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24\S22049-Arjun-24.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-25.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25\S22049-Arjun-25.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-25.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25\S22049-Arjun-25.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-26.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26\S22049-Arjun-26.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-26.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26\S22049-Arjun-26.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-27.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27\S22049-Arjun-27.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-27.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27\S22049-Arjun-27.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-28.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28\S22049-Arjun-28.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-28.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28\S22049-Arjun-28.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-29.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29\S22049-Arjun-29.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-29.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29\S22049-Arjun-29.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-3.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3\S22049-Arjun-3.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-3.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3\S22049-Arjun-3.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-30.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30\S22049-Arjun-30.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-30.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30\S22049-Arjun-30.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-31.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31\S22049-Arjun-31.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-31.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31\S22049-Arjun-31.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-32.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32\S22049-Arjun-32.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-32.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32\S22049-Arjun-32.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-33.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33\S22049-Arjun-33.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-33.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33\S22049-Arjun-33.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-34.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34\S22049-Arjun-34.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-34.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34\S22049-Arjun-34.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-35.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35\S22049-Arjun-35.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-35.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35\S22049-Arjun-35.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-36.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36\S22049-Arjun-36.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-36.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36\S22049-Arjun-36.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-37.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37\S22049-Arjun-37.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-37.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37\S22049-Arjun-37.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-38.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38\S22049-Arjun-38.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-38.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38\S22049-Arjun-38.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-39.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39\S22049-Arjun-39.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-39.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39\S22049-Arjun-39.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-4.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4\S22049-Arjun-4.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-4.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4\S22049-Arjun-4.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-40.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40\S22049-Arjun-40.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-40.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40\S22049-Arjun-40.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-41.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41\S22049-Arjun-41.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-41.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41\S22049-Arjun-41.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-42.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42\S22049-Arjun-42.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-42.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42\S22049-Arjun-42.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-43.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43\S22049-Arjun-43.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-43.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43\S22049-Arjun-43.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-44.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44\S22049-Arjun-44.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-44.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44\S22049-Arjun-44.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-45.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45\S22049-Arjun-45.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-45.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45\S22049-Arjun-45.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-46.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46\S22049-Arjun-46.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-46.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46\S22049-Arjun-46.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-47.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47\S22049-Arjun-47.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-47.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47\S22049-Arjun-47.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-48.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48\S22049-Arjun-48.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-48.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48\S22049-Arjun-48.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-49.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49\S22049-Arjun-49.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-49.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49\S22049-Arjun-49.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-5.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5\S22049-Arjun-5.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-5.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5\S22049-Arjun-5.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-50.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50\S22049-Arjun-50.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-50.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50\S22049-Arjun-50.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-51.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51\S22049-Arjun-51.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-51.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51\S22049-Arjun-51.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-52.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52\S22049-Arjun-52.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-52.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52\S22049-Arjun-52.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-53.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53\S22049-Arjun-53.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-53.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53\S22049-Arjun-53.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-54.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54\S22049-Arjun-54.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-54.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54\S22049-Arjun-54.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-55.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55\S22049-Arjun-55.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-55.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55\S22049-Arjun-55.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-56.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56\S22049-Arjun-56.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-56.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56\S22049-Arjun-56.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-57.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57\S22049-Arjun-57.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-57.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57\S22049-Arjun-57.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-58-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd\S22049-Arjun-58-2nd.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-58-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd\S22049-Arjun-58-2nd.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-59-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd\S22049-Arjun-59-2nd.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-59-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd\S22049-Arjun-59-2nd.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-6.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6\S22049-Arjun-6.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-6.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6\S22049-Arjun-6.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-60-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd\S22049-Arjun-60-2nd.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-60-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd\S22049-Arjun-60-2nd.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-61-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd\S22049-Arjun-61-2nd.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-61-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd\S22049-Arjun-61-2nd.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-62-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd\S22049-Arjun-62-2nd.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-62-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd\S22049-Arjun-62-2nd.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-63-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd\S22049-Arjun-63-2nd.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-63-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd\S22049-Arjun-63-2nd.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-64-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd\S22049-Arjun-64-2nd.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-64-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd\S22049-Arjun-64-2nd.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-65-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd\S22049-Arjun-65-2nd.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-65-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd\S22049-Arjun-65-2nd.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-66-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd\S22049-Arjun-66-2nd.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-66-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd\S22049-Arjun-66-2nd.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-67.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67\S22049-Arjun-67.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-67.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67\S22049-Arjun-67.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-68.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68\S22049-Arjun-68.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-68.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68\S22049-Arjun-68.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-69.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69\S22049-Arjun-69.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-69.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69\S22049-Arjun-69.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-7.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7\S22049-Arjun-7.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-7.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7\S22049-Arjun-7.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-70.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70\S22049-Arjun-70.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-70.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70\S22049-Arjun-70.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-71.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71\S22049-Arjun-71.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-71.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71\S22049-Arjun-71.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-72.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72\S22049-Arjun-72.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-72.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72\S22049-Arjun-72.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-73.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73\S22049-Arjun-73.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-73.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73\S22049-Arjun-73.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-74.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74\S22049-Arjun-74.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-74.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74\S22049-Arjun-74.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-75.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75\S22049-Arjun-75.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-75.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75\S22049-Arjun-75.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-76.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76\S22049-Arjun-76.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-76.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76\S22049-Arjun-76.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-77.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77\S22049-Arjun-77.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-77.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77\S22049-Arjun-77.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-78.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78\S22049-Arjun-78.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-78.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78\S22049-Arjun-78.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-79.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79\S22049-Arjun-79.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-79.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79\S22049-Arjun-79.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-8.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8\S22049-Arjun-8.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-8.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8\S22049-Arjun-8.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-80.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80\S22049-Arjun-80.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-80.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80\S22049-Arjun-80.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-81.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81\S22049-Arjun-81.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-81.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81\S22049-Arjun-81.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-82.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82\S22049-Arjun-82.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-82.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82\S22049-Arjun-82.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-83.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83\S22049-Arjun-83.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-83.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83\S22049-Arjun-83.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-84-2nd.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd\S22049-Arjun-84-2nd.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-84-2nd.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd\S22049-Arjun-84-2nd.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-85.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85\S22049-Arjun-85.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-85.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85\S22049-Arjun-85.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-86.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86\S22049-Arjun-86.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-86.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86\S22049-Arjun-86.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-87.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87\S22049-Arjun-87.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-87.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87\S22049-Arjun-87.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-88.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88\S22049-Arjun-88.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-88.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88\S22049-Arjun-88.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-89.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89\S22049-Arjun-89.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-89.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89\S22049-Arjun-89.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-9.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9\S22049-Arjun-9.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-9.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9\S22049-Arjun-9.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-90.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90\S22049-Arjun-90.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-90.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90\S22049-Arjun-90.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-91.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91\S22049-Arjun-91.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-91.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91\S22049-Arjun-91.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-92.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92\S22049-Arjun-92.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-92.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92\S22049-Arjun-92.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-93.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93\S22049-Arjun-93.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-93.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93\S22049-Arjun-93.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-94.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94\S22049-Arjun-94.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-94.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94\S22049-Arjun-94.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-95.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95\S22049-Arjun-95.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-95.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95\S22049-Arjun-95.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-96.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96\S22049-Arjun-96.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-96.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96\S22049-Arjun-96.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-97.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97\S22049-Arjun-97.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-97.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97\S22049-Arjun-97.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-98.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98\S22049-Arjun-98.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-98.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98\S22049-Arjun-98.pin Process 'MSFragger move pin' finished, exit code: 0 MSFragger move pepxml D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-99.pepXML D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99\S22049-Arjun-99.pepXML Process 'MSFragger move pepxml' finished, exit code: 0 MSFragger move pin D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar;/D:/JAM/fragpipe/lib/commons-io-2.11.0.jar com.github.chhh.utils.FileMove --no-err D:\JAM\Sylvain\S22049-Arjun-99.pin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99\S22049-Arjun-99.pin Process 'MSFragger move pin' finished, exit code: 0 MSBooster [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\jre\bin\java.exe -Xmx30G -cp "D:\JAM\fragpipe\tools\msbooster-1.1.11.jar;D:\JAM\fragpipe\tools\batmass-io-1.28.9.jar" Features.MainClass --paramsList D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\msbooster_params.txt MSBooster v1.1.11 Using 7 threads Generating input file for DIA-NN 174252 unique peptides from 9150242 PSMs Writing DIA-NN input file Diann input file generation took 30316 milliseconds Input file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\spectraRT.tsv 174252 unique peptides from 9150242 PSMs createFull input file generation took 29228 milliseconds Input file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\spectraRT_full.tsv Generating DIA-NN predictions D:\JAM\fragpipe\tools\diann\1.8.2_beta_8\win\DiaNN.exe --lib D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\spectraRT.tsv --predict --threads 7 --strip-unknown-mods --mod TMT,229.1629 --predict-n-frag 100 DIA-NN 1.8.2 beta 8 (Data-Independent Acquisition by Neural Networks) Compiled on Sep 15 2022 18:28:57 Current date and time: Wed Mar 8 10:18:00 2023 CPU: GenuineIntel Intel(R) Core(TM) i7-7700 CPU @ 3.60GHz SIMD instructions: AVX AVX2 FMA SSE4.1 SSE4.2 Logical CPU cores: 8 Predicted spectra will be saved in a binary format Thread number set to 7 DIA-NN will use deep learning to predict spectra/RTs/IMs even for peptides carrying modifications which are not recognised by the deep learning predictor. In this scenario, if also generating a spectral library from the DIA data or using the MBR mode, it might or might not be better (depends on the data) to also use the --out-measured-rt option - it's recommended to test it with and without this option Modification TMT with mass delta 229.163 added to the list of recognised modifications for spectral library-based search Deep learning predictor will predict 100 fragments Cannot find a UniMod modification match for TMT: 73.0618 minimal mass discrepancy; using the original modificaiton name 0 files will be processed [0:00] Loading spectral library D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\spectraRT.tsv [0:00] Finding proteotypic peptides (assuming that the list of UniProt ids provided for each peptide is complete) [0:00] Spectral library loaded: 0 protein isoforms, 0 protein groups and 174252 precursors in 143622 elution groups. [0:00] Encoding peptides for spectra and RTs prediction [0:01] Predicting spectra and IMs [1:03] Predicting RTs [1:19] Decoding predicted spectra and IMs [1:22] Decoding RTs [1:22] Saving the list of predictions to D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\spectraRT.predicted.bin Finished Done generating DIA-NN predictions Model running took 86808 milliseconds Generating edited pin with following features: [unweightedSpectralEntropy, deltaRTLOESS] Loading predicted spectra Processing S22049-Arjun-100_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100\S22049-Arjun-100_edited.pin Processing S22049-Arjun-101_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101\S22049-Arjun-101_edited.pin Processing S22049-Arjun-102_uncalibrated.mzML RT regression using 1721 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102\S22049-Arjun-102_edited.pin Processing S22049-Arjun-103_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103\S22049-Arjun-103_edited.pin Processing S22049-Arjun-104_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104\S22049-Arjun-104_edited.pin Processing S22049-Arjun-105_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105\S22049-Arjun-105_edited.pin Processing S22049-Arjun-106_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106\S22049-Arjun-106_edited.pin Processing S22049-Arjun-107_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107\S22049-Arjun-107_edited.pin Processing S22049-Arjun-108_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108\S22049-Arjun-108_edited.pin Processing S22049-Arjun-109_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109\S22049-Arjun-109_edited.pin Processing S22049-Arjun-10_uncalibrated.mzML RT regression using 3877 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10\S22049-Arjun-10_edited.pin Processing S22049-Arjun-110_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110\S22049-Arjun-110_edited.pin Processing S22049-Arjun-111_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111\S22049-Arjun-111_edited.pin Processing S22049-Arjun-112_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112\S22049-Arjun-112_edited.pin Processing S22049-Arjun-113_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113\S22049-Arjun-113_edited.pin Processing S22049-Arjun-114_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114\S22049-Arjun-114_edited.pin Processing S22049-Arjun-115_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115\S22049-Arjun-115_edited.pin Processing S22049-Arjun-116_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116\S22049-Arjun-116_edited.pin Processing S22049-Arjun-117_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117\S22049-Arjun-117_edited.pin Processing S22049-Arjun-118_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118\S22049-Arjun-118_edited.pin Processing S22049-Arjun-119_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119\S22049-Arjun-119_edited.pin Processing S22049-Arjun-11_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11\S22049-Arjun-11_edited.pin Processing S22049-Arjun-120_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120\S22049-Arjun-120_edited.pin Processing S22049-Arjun-121_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121\S22049-Arjun-121_edited.pin Processing S22049-Arjun-122_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122\S22049-Arjun-122_edited.pin Processing S22049-Arjun-123_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\S22049-Arjun-123_edited.pin Processing S22049-Arjun-125_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125\S22049-Arjun-125_edited.pin Processing S22049-Arjun-126_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126\S22049-Arjun-126_edited.pin Processing S22049-Arjun-127_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127\S22049-Arjun-127_edited.pin Processing S22049-Arjun-128_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128\S22049-Arjun-128_edited.pin Processing S22049-Arjun-129_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129\S22049-Arjun-129_edited.pin Processing S22049-Arjun-12_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12\S22049-Arjun-12_edited.pin Processing S22049-Arjun-130_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130\S22049-Arjun-130_edited.pin Processing S22049-Arjun-131_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131\S22049-Arjun-131_edited.pin Processing S22049-Arjun-132_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132\S22049-Arjun-132_edited.pin Processing S22049-Arjun-133_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133\S22049-Arjun-133_edited.pin Processing S22049-Arjun-134_uncalibrated.mzML RT regression using 652 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134\S22049-Arjun-134_edited.pin Processing S22049-Arjun-135_uncalibrated.mzML RT regression using 726 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135\S22049-Arjun-135_edited.pin Processing S22049-Arjun-136_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136\S22049-Arjun-136_edited.pin Processing S22049-Arjun-137_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137\S22049-Arjun-137_edited.pin Processing S22049-Arjun-138_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138\S22049-Arjun-138_edited.pin Processing S22049-Arjun-139_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139\S22049-Arjun-139_edited.pin Processing S22049-Arjun-13_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13\S22049-Arjun-13_edited.pin Processing S22049-Arjun-140_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140\S22049-Arjun-140_edited.pin Processing S22049-Arjun-141_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141\S22049-Arjun-141_edited.pin Processing S22049-Arjun-142_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142\S22049-Arjun-142_edited.pin Processing S22049-Arjun-143_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143\S22049-Arjun-143_edited.pin Processing S22049-Arjun-144_uncalibrated.mzML RT regression using 4875 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144\S22049-Arjun-144_edited.pin Processing S22049-Arjun-14_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14\S22049-Arjun-14_edited.pin Processing S22049-Arjun-15_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15\S22049-Arjun-15_edited.pin Processing S22049-Arjun-16_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16\S22049-Arjun-16_edited.pin Processing S22049-Arjun-17_uncalibrated.mzML RT regression using 4543 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17\S22049-Arjun-17_edited.pin Processing S22049-Arjun-18_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18\S22049-Arjun-18_edited.pin Processing S22049-Arjun-19_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19\S22049-Arjun-19_edited.pin Processing S22049-Arjun-1_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\S22049-Arjun-1_edited.pin Processing S22049-Arjun-20_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20\S22049-Arjun-20_edited.pin Processing S22049-Arjun-21_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21\S22049-Arjun-21_edited.pin Processing S22049-Arjun-22_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22\S22049-Arjun-22_edited.pin Processing S22049-Arjun-23_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23\S22049-Arjun-23_edited.pin Processing S22049-Arjun-24_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24\S22049-Arjun-24_edited.pin Processing S22049-Arjun-25_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25\S22049-Arjun-25_edited.pin Processing S22049-Arjun-26_uncalibrated.mzML RT regression using 4722 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26\S22049-Arjun-26_edited.pin Processing S22049-Arjun-27_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27\S22049-Arjun-27_edited.pin Processing S22049-Arjun-28_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28\S22049-Arjun-28_edited.pin Processing S22049-Arjun-29_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29\S22049-Arjun-29_edited.pin Processing S22049-Arjun-2_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2\S22049-Arjun-2_edited.pin Processing S22049-Arjun-30_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30\S22049-Arjun-30_edited.pin Processing S22049-Arjun-31_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31\S22049-Arjun-31_edited.pin Processing S22049-Arjun-32_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32\S22049-Arjun-32_edited.pin Processing S22049-Arjun-33_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33\S22049-Arjun-33_edited.pin Processing S22049-Arjun-34_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34\S22049-Arjun-34_edited.pin Processing S22049-Arjun-35_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35\S22049-Arjun-35_edited.pin Processing S22049-Arjun-36_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36\S22049-Arjun-36_edited.pin Processing S22049-Arjun-37_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37\S22049-Arjun-37_edited.pin Processing S22049-Arjun-38_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38\S22049-Arjun-38_edited.pin Processing S22049-Arjun-39_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39\S22049-Arjun-39_edited.pin Processing S22049-Arjun-3_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3\S22049-Arjun-3_edited.pin Processing S22049-Arjun-40_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40\S22049-Arjun-40_edited.pin Processing S22049-Arjun-41_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41\S22049-Arjun-41_edited.pin Processing S22049-Arjun-42_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42\S22049-Arjun-42_edited.pin Processing S22049-Arjun-43_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43\S22049-Arjun-43_edited.pin Processing S22049-Arjun-44_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44\S22049-Arjun-44_edited.pin Processing S22049-Arjun-45_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45\S22049-Arjun-45_edited.pin Processing S22049-Arjun-46_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46\S22049-Arjun-46_edited.pin Processing S22049-Arjun-47_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47\S22049-Arjun-47_edited.pin Processing S22049-Arjun-48_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48\S22049-Arjun-48_edited.pin Processing S22049-Arjun-49_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49\S22049-Arjun-49_edited.pin Processing S22049-Arjun-4_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4\S22049-Arjun-4_edited.pin Processing S22049-Arjun-50_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50\S22049-Arjun-50_edited.pin Processing S22049-Arjun-51_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51\S22049-Arjun-51_edited.pin Processing S22049-Arjun-52_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52\S22049-Arjun-52_edited.pin Processing S22049-Arjun-53_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53\S22049-Arjun-53_edited.pin Processing S22049-Arjun-54_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54\S22049-Arjun-54_edited.pin Processing S22049-Arjun-55_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55\S22049-Arjun-55_edited.pin Processing S22049-Arjun-56_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56\S22049-Arjun-56_edited.pin Processing S22049-Arjun-57_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57\S22049-Arjun-57_edited.pin Processing S22049-Arjun-58-2nd_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd\S22049-Arjun-58-2nd_edited.pin Processing S22049-Arjun-59-2nd_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd\S22049-Arjun-59-2nd_edited.pin Processing S22049-Arjun-5_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5\S22049-Arjun-5_edited.pin Processing S22049-Arjun-60-2nd_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd\S22049-Arjun-60-2nd_edited.pin Processing S22049-Arjun-61-2nd_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd\S22049-Arjun-61-2nd_edited.pin Processing S22049-Arjun-62-2nd_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd\S22049-Arjun-62-2nd_edited.pin Processing S22049-Arjun-63-2nd_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd\S22049-Arjun-63-2nd_edited.pin Processing S22049-Arjun-64-2nd_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd\S22049-Arjun-64-2nd_edited.pin Processing S22049-Arjun-65-2nd_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd\S22049-Arjun-65-2nd_edited.pin Processing S22049-Arjun-66-2nd_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd\S22049-Arjun-66-2nd_edited.pin Processing S22049-Arjun-67_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67\S22049-Arjun-67_edited.pin Processing S22049-Arjun-68_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68\S22049-Arjun-68_edited.pin Processing S22049-Arjun-69_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69\S22049-Arjun-69_edited.pin Processing S22049-Arjun-6_uncalibrated.mzML RT regression using 4918 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6\S22049-Arjun-6_edited.pin Processing S22049-Arjun-70_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70\S22049-Arjun-70_edited.pin Processing S22049-Arjun-71_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71\S22049-Arjun-71_edited.pin Processing S22049-Arjun-72_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72\S22049-Arjun-72_edited.pin Processing S22049-Arjun-73_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73\S22049-Arjun-73_edited.pin Processing S22049-Arjun-74_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74\S22049-Arjun-74_edited.pin Processing S22049-Arjun-75_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75\S22049-Arjun-75_edited.pin Processing S22049-Arjun-76_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76\S22049-Arjun-76_edited.pin Processing S22049-Arjun-77_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77\S22049-Arjun-77_edited.pin Processing S22049-Arjun-78_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78\S22049-Arjun-78_edited.pin Processing S22049-Arjun-79_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79\S22049-Arjun-79_edited.pin Processing S22049-Arjun-7_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7\S22049-Arjun-7_edited.pin Processing S22049-Arjun-80_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80\S22049-Arjun-80_edited.pin Processing S22049-Arjun-81_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81\S22049-Arjun-81_edited.pin Processing S22049-Arjun-82_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82\S22049-Arjun-82_edited.pin Processing S22049-Arjun-83_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83\S22049-Arjun-83_edited.pin Processing S22049-Arjun-84-2nd_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd\S22049-Arjun-84-2nd_edited.pin Processing S22049-Arjun-85_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85\S22049-Arjun-85_edited.pin Processing S22049-Arjun-86_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86\S22049-Arjun-86_edited.pin Processing S22049-Arjun-87_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87\S22049-Arjun-87_edited.pin Processing S22049-Arjun-88_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88\S22049-Arjun-88_edited.pin Processing S22049-Arjun-89_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89\S22049-Arjun-89_edited.pin Processing S22049-Arjun-8_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8\S22049-Arjun-8_edited.pin Processing S22049-Arjun-90_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90\S22049-Arjun-90_edited.pin Processing S22049-Arjun-91_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91\S22049-Arjun-91_edited.pin Processing S22049-Arjun-92_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92\S22049-Arjun-92_edited.pin Processing S22049-Arjun-93_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93\S22049-Arjun-93_edited.pin Processing S22049-Arjun-94_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94\S22049-Arjun-94_edited.pin Processing S22049-Arjun-95_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95\S22049-Arjun-95_edited.pin Processing S22049-Arjun-96_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96\S22049-Arjun-96_edited.pin Processing S22049-Arjun-97_uncalibrated.mzML RT regression using 3809 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97\S22049-Arjun-97_edited.pin Processing S22049-Arjun-98_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98\S22049-Arjun-98_edited.pin Processing S22049-Arjun-99_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99\S22049-Arjun-99_edited.pin Processing S22049-Arjun-9_uncalibrated.mzML RT regression using 5000 PSMs Edited pin file at D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9\S22049-Arjun-9_edited.pin Done in 1036775 ms Process 'MSBooster' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-21_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-21_percolator_decoy_psms.tsv S22049-Arjun-21_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-21_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-21_percolator_decoy_psms.tsv S22049-Arjun-21_edited.pin Started Wed Mar 8 10:36:40 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-21_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 64327 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 60291 positives and 4036 negatives, size ratio=14.9383 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36937 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 37083 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 37033 training set positives with q<0.01 in that direction. Found 55532 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.448 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 56316 PSMs with q<0.01 Iteration 2: Estimated 56546 PSMs with q<0.01 Iteration 3: Estimated 56641 PSMs with q<0.01 Iteration 4: Estimated 56672 PSMs with q<0.01 Iteration 5: Estimated 56682 PSMs with q<0.01 Iteration 6: Estimated 56684 PSMs with q<0.01 Iteration 7: Estimated 56682 PSMs with q<0.01 Iteration 8: Estimated 56683 PSMs with q<0.01 Iteration 9: Estimated 56683 PSMs with q<0.01 Iteration 10: Estimated 56682 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1095 0.0599 0.1395 retentiontime 0.0000 0.0000 0.0000 rank -0.2415 -0.2106 -0.2143 abs_ppm -0.0744 -0.1182 -0.1300 isotope_errors -0.6338 -0.5255 -0.6952 log10_evalue 0.4457 0.6079 0.4629 hyperscore 0.3860 0.4840 0.3521 delta_hyperscore 0.4962 0.3851 0.5578 matched_ion_num -0.3752 -0.5700 -0.5545 complementary_ions -0.1018 -0.1504 -0.2107 ion_series 0.0096 0.0078 0.0129 weighted_average_abs_fragment_ppm 0.1617 0.1155 0.1014 peptide_length 0.0000 0.0000 0.0000 ntt -0.1638 -0.1363 -0.1518 nmc 0.0000 0.0000 0.0000 charge_1 -0.0143 -0.0138 -0.0078 charge_2 0.0099 -0.0158 0.0039 charge_3 0.0374 0.2315 0.0325 charge_4 -0.0151 -0.0076 -0.0094 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0493 -0.0400 -0.0568 15.9949M 0.4495 0.4920 0.5291 unweighted_spectral_entropy -0.4801 -0.4279 -0.4683 delta_RT_loess 1.7088 2.1856 2.2881 m0 Found 56650 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 60291 target PSMs and 4036 decoy PSMs. Calculating q values. Final list yields 56652 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 18.63 cpu seconds or 19 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-120_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-120_percolator_decoy_psms.tsv S22049-Arjun-120_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-120_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-120_percolator_decoy_psms.tsv S22049-Arjun-120_edited.pin Started Wed Mar 8 10:37:02 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-120_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 54391 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 50955 positives and 3436 negatives, size ratio=14.8297 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 31211 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 31170 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 31288 training set positives with q<0.01 in that direction. Found 46815 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.862 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 47549 PSMs with q<0.01 Iteration 2: Estimated 47688 PSMs with q<0.01 Iteration 3: Estimated 47813 PSMs with q<0.01 Iteration 4: Estimated 47873 PSMs with q<0.01 Iteration 5: Estimated 47896 PSMs with q<0.01 Iteration 6: Estimated 47904 PSMs with q<0.01 Iteration 7: Estimated 47908 PSMs with q<0.01 Iteration 8: Estimated 47909 PSMs with q<0.01 Iteration 9: Estimated 47909 PSMs with q<0.01 Iteration 10: Estimated 47908 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0488 -0.0869 -0.0757 retentiontime 0.0000 0.0000 0.0000 rank -0.1885 -0.1973 -0.1804 abs_ppm -0.0872 -0.0621 -0.0556 isotope_errors -0.4366 -0.6397 -0.5621 log10_evalue 0.4695 0.6995 0.6942 hyperscore 0.4483 0.3526 0.5126 delta_hyperscore 0.5989 0.6327 0.2951 matched_ion_num -0.4294 -0.6881 -0.4743 complementary_ions -0.0390 -0.0453 -0.1283 ion_series -0.0178 -0.0059 -0.0091 weighted_average_abs_fragment_ppm 0.1642 0.3153 0.2662 peptide_length 0.0000 0.0000 0.0000 ntt -0.1258 -0.1585 -0.1301 nmc 0.0000 0.0000 0.0000 charge_1 -0.0100 0.0162 0.0024 charge_2 0.0098 -0.0123 -0.0013 charge_3 -0.0007 -0.0206 -0.0086 charge_4 0.0332 -0.0152 0.0295 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0144 -0.0054 -0.0303 15.9949M 0.4485 0.4598 0.4987 unweighted_spectral_entropy -0.5121 -0.5376 -0.5454 delta_RT_loess 2.2536 2.5046 2.2682 m0 Found 47894 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 50955 target PSMs and 3436 decoy PSMs. Calculating q values. Final list yields 47894 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 12.84 cpu seconds or 12 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-34_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-34_percolator_decoy_psms.tsv S22049-Arjun-34_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-34_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-34_percolator_decoy_psms.tsv S22049-Arjun-34_edited.pin Started Wed Mar 8 10:37:16 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-34_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 70632 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 65038 positives and 5594 negatives, size ratio=11.6264 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 38782 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 38593 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 38721 training set positives with q<0.01 in that direction. Found 58039 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.219 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 59515 PSMs with q<0.01 Iteration 2: Estimated 59740 PSMs with q<0.01 Iteration 3: Estimated 59825 PSMs with q<0.01 Iteration 4: Estimated 59846 PSMs with q<0.01 Iteration 5: Estimated 59845 PSMs with q<0.01 Iteration 6: Estimated 59854 PSMs with q<0.01 Iteration 7: Estimated 59851 PSMs with q<0.01 Iteration 8: Estimated 59851 PSMs with q<0.01 Iteration 9: Estimated 59855 PSMs with q<0.01 Iteration 10: Estimated 59857 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1003 0.0719 0.0689 retentiontime 0.0000 0.0000 0.0000 rank -0.2239 -0.2489 -0.2394 abs_ppm -0.1567 -0.1317 -0.1267 isotope_errors -0.1885 -0.5659 -0.3070 log10_evalue 1.4579 0.6423 0.7954 hyperscore 0.6232 0.6728 0.6250 delta_hyperscore 0.0705 0.4538 0.6445 matched_ion_num -0.8460 -0.7733 -0.8433 complementary_ions 0.1614 0.1059 0.0588 ion_series -0.0493 -0.0151 -0.0144 weighted_average_abs_fragment_ppm 0.1368 0.1316 0.1106 peptide_length 0.0000 0.0000 0.0000 ntt -0.1751 -0.1587 -0.1646 nmc 0.0000 0.0000 0.0000 charge_1 -0.0058 -0.0102 -0.0170 charge_2 -0.0030 0.0120 0.0170 charge_3 0.0308 -0.0179 -0.0024 charge_4 0.0269 0.0637 0.0186 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0264 -0.0025 -0.0158 15.9949M 0.6025 0.6103 0.6024 unweighted_spectral_entropy -0.6294 -0.7194 -0.6724 delta_RT_loess 1.9359 2.5378 2.4722 m0 Found 59826 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 65038 target PSMs and 5594 decoy PSMs. Calculating q values. Final list yields 59826 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.89 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-75_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-75_percolator_decoy_psms.tsv S22049-Arjun-75_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-75_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-75_percolator_decoy_psms.tsv S22049-Arjun-75_edited.pin Started Wed Mar 8 10:37:33 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-75_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 60079 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 56717 positives and 3362 negatives, size ratio=16.87 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 35154 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 35162 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 35273 training set positives with q<0.01 in that direction. Found 52789 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.979 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 53385 PSMs with q<0.01 Iteration 2: Estimated 53533 PSMs with q<0.01 Iteration 3: Estimated 53611 PSMs with q<0.01 Iteration 4: Estimated 53643 PSMs with q<0.01 Iteration 5: Estimated 53653 PSMs with q<0.01 Iteration 6: Estimated 53660 PSMs with q<0.01 Iteration 7: Estimated 53660 PSMs with q<0.01 Iteration 8: Estimated 53663 PSMs with q<0.01 Iteration 9: Estimated 53663 PSMs with q<0.01 Iteration 10: Estimated 53663 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0249 0.0101 0.0071 retentiontime 0.0000 0.0000 0.0000 rank -0.1711 -0.1732 -0.1774 abs_ppm -0.1057 -0.1240 -0.0906 isotope_errors -0.5420 -0.5217 -0.4306 log10_evalue 0.2715 0.6773 0.7601 hyperscore 0.3701 0.3740 0.3919 delta_hyperscore 0.6461 0.5712 0.4152 matched_ion_num -0.7035 -0.8632 -0.7276 complementary_ions -0.0396 -0.0760 0.0413 ion_series 0.0065 -0.0217 0.0258 weighted_average_abs_fragment_ppm 0.1580 0.1784 0.2377 peptide_length 0.0000 0.0000 0.0000 ntt -0.0953 -0.1262 -0.1002 nmc 0.0000 0.0000 0.0000 charge_1 0.0294 0.0109 0.0526 charge_2 -0.0381 -0.0304 -0.0559 charge_3 0.0087 0.0219 -0.0071 charge_4 0.0425 0.1021 0.0377 charge_5 -0.0085 -0.0094 -0.0092 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0303 -0.0563 -0.0369 15.9949M 0.5398 0.5457 0.5260 unweighted_spectral_entropy -0.4971 -0.5407 -0.4882 delta_RT_loess 2.0912 2.3097 2.2640 m0 Found 53637 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 56717 target PSMs and 3362 decoy PSMs. Calculating q values. Final list yields 53637 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.21 cpu seconds or 13 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-116_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-116_percolator_decoy_psms.tsv S22049-Arjun-116_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-116_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-116_percolator_decoy_psms.tsv S22049-Arjun-116_edited.pin Started Wed Mar 8 10:37:48 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-116_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 52608 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 49455 positives and 3153 negatives, size ratio=15.6851 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 30383 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 30402 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 30469 training set positives with q<0.01 in that direction. Found 45607 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.854 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 46338 PSMs with q<0.01 Iteration 2: Estimated 46490 PSMs with q<0.01 Iteration 3: Estimated 46558 PSMs with q<0.01 Iteration 4: Estimated 46588 PSMs with q<0.01 Iteration 5: Estimated 46591 PSMs with q<0.01 Iteration 6: Estimated 46590 PSMs with q<0.01 Iteration 7: Estimated 46596 PSMs with q<0.01 Iteration 8: Estimated 46593 PSMs with q<0.01 Iteration 9: Estimated 46594 PSMs with q<0.01 Iteration 10: Estimated 46591 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0279 0.0391 0.0033 retentiontime 0.0000 0.0000 0.0000 rank -0.1261 -0.1272 -0.1316 abs_ppm -0.0875 -0.0837 -0.0951 isotope_errors -0.8207 -0.6459 -0.5558 log10_evalue 0.7947 0.1908 0.5890 hyperscore 0.5275 0.5260 0.5024 delta_hyperscore -0.0615 0.5964 0.4679 matched_ion_num -0.5853 -0.4144 -0.6164 complementary_ions 0.1554 0.0660 -0.0395 ion_series -0.0294 -0.0382 -0.0163 weighted_average_abs_fragment_ppm 0.2213 0.2121 0.2047 peptide_length 0.0000 0.0000 0.0000 ntt -0.1023 -0.1113 -0.0999 nmc 0.0000 0.0000 0.0000 charge_1 -0.0367 0.0093 0.0142 charge_2 0.0151 -0.0034 -0.0106 charge_3 0.1147 -0.0312 -0.0194 charge_4 0.0000 0.0000 0.0000 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0305 -0.0923 -0.0696 15.9949M 0.5377 0.4427 0.4817 unweighted_spectral_entropy -0.5424 -0.6866 -0.5907 delta_RT_loess 1.9209 2.4254 2.3072 m0 Found 46591 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 49455 target PSMs and 3153 decoy PSMs. Calculating q values. Final list yields 46592 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.23 cpu seconds or 15 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-47_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-47_percolator_decoy_psms.tsv S22049-Arjun-47_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-47_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-47_percolator_decoy_psms.tsv S22049-Arjun-47_edited.pin Started Wed Mar 8 10:38:05 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-47_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 70771 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 66334 positives and 4437 negatives, size ratio=14.9502 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 40819 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 40896 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 40817 training set positives with q<0.01 in that direction. Found 61241 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.249 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 62108 PSMs with q<0.01 Iteration 2: Estimated 62265 PSMs with q<0.01 Iteration 3: Estimated 62341 PSMs with q<0.01 Iteration 4: Estimated 62379 PSMs with q<0.01 Iteration 5: Estimated 62382 PSMs with q<0.01 Iteration 6: Estimated 62383 PSMs with q<0.01 Iteration 7: Estimated 62382 PSMs with q<0.01 Iteration 8: Estimated 62381 PSMs with q<0.01 Iteration 9: Estimated 62383 PSMs with q<0.01 Iteration 10: Estimated 62381 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0323 -0.0131 0.0942 retentiontime 0.0000 0.0000 0.0000 rank -0.1821 -0.1952 -0.2170 abs_ppm -0.1445 -0.1185 -0.0584 isotope_errors -0.5909 -0.8211 -1.0215 log10_evalue 0.6772 0.4465 0.4795 hyperscore 0.6140 0.5369 0.6101 delta_hyperscore 0.8114 0.4369 0.3896 matched_ion_num -0.8770 -0.6010 -0.5434 complementary_ions -0.0016 -0.0495 0.1518 ion_series 0.0330 -0.0388 -0.0141 weighted_average_abs_fragment_ppm 0.1817 0.2739 0.1413 peptide_length 0.0000 0.0000 0.0000 ntt -0.1451 -0.1388 -0.1643 nmc 0.0000 0.0000 0.0000 charge_1 0.0325 0.0286 0.0054 charge_2 -0.0372 -0.0294 -0.0083 charge_3 0.0102 0.0062 0.0084 charge_4 0.0113 -0.0206 0.0032 charge_5 -0.0084 -0.0086 -0.0087 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0295 -0.0660 -0.0391 15.9949M 0.5084 0.5507 0.5019 unweighted_spectral_entropy -0.4175 -0.3684 -0.4490 delta_RT_loess 2.2306 2.2980 2.4011 m0 Found 62374 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 66334 target PSMs and 4437 decoy PSMs. Calculating q values. Final list yields 62374 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.88 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-90_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-90_percolator_decoy_psms.tsv S22049-Arjun-90_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-90_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-90_percolator_decoy_psms.tsv S22049-Arjun-90_edited.pin Started Wed Mar 8 10:38:23 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-90_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 65317 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 61053 positives and 4264 negatives, size ratio=14.3182 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 37282 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 37423 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 37313 training set positives with q<0.01 in that direction. Found 56012 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.052 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 56976 PSMs with q<0.01 Iteration 2: Estimated 57193 PSMs with q<0.01 Iteration 3: Estimated 57290 PSMs with q<0.01 Iteration 4: Estimated 57304 PSMs with q<0.01 Iteration 5: Estimated 57306 PSMs with q<0.01 Iteration 6: Estimated 57312 PSMs with q<0.01 Iteration 7: Estimated 57309 PSMs with q<0.01 Iteration 8: Estimated 57311 PSMs with q<0.01 Iteration 9: Estimated 57312 PSMs with q<0.01 Iteration 10: Estimated 57308 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0136 -0.0209 0.0026 retentiontime 0.0000 0.0000 0.0000 rank -0.2190 -0.2461 -0.2009 abs_ppm -0.0825 -0.0884 -0.0524 isotope_errors -0.2889 -0.6774 -0.4207 log10_evalue 0.4029 0.7010 1.0822 hyperscore 0.6025 0.4382 0.6152 delta_hyperscore 0.5899 0.3764 0.3394 matched_ion_num -0.6574 -0.7783 -0.8730 complementary_ions 0.0650 0.0607 0.0698 ion_series -0.0478 -0.0229 -0.0449 weighted_average_abs_fragment_ppm 0.2105 0.1901 0.1849 peptide_length 0.0000 0.0000 0.0000 ntt -0.1788 -0.1572 -0.1780 nmc 0.0000 0.0000 0.0000 charge_1 0.0416 0.0345 0.0192 charge_2 -0.0399 -0.0148 0.0013 charge_3 -0.0113 -0.0660 -0.0694 charge_4 0.0095 -0.0030 0.0039 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0241 -0.0235 -0.0285 15.9949M 0.5326 0.5335 0.5430 unweighted_spectral_entropy -0.5828 -0.5542 -0.4980 delta_RT_loess 2.2652 2.4909 2.3225 m0 Found 57305 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 61053 target PSMs and 4264 decoy PSMs. Calculating q values. Final list yields 57307 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.86 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-135_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-135_percolator_decoy_psms.tsv S22049-Arjun-135_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-135_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-135_percolator_decoy_psms.tsv S22049-Arjun-135_edited.pin Started Wed Mar 8 10:38:39 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-135_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 5465 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 4978 positives and 487 negatives, size ratio=10.2218 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 2983 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 2961 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 2965 training set positives with q<0.01 in that direction. Found 4429 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.124 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 4499 PSMs with q<0.01 Iteration 2: Estimated 4506 PSMs with q<0.01 Iteration 3: Estimated 4506 PSMs with q<0.01 Iteration 4: Estimated 4509 PSMs with q<0.01 Iteration 5: Estimated 4509 PSMs with q<0.01 Iteration 6: Estimated 4510 PSMs with q<0.01 Iteration 7: Estimated 4510 PSMs with q<0.01 Iteration 8: Estimated 4510 PSMs with q<0.01 Iteration 9: Estimated 4510 PSMs with q<0.01 Iteration 10: Estimated 4510 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0776 -0.0272 -0.0445 retentiontime 0.0000 0.0000 0.0000 rank -0.0050 -0.1371 -0.0865 abs_ppm -0.2559 -0.1405 -0.0643 isotope_errors -0.7478 -0.8203 -0.7718 log10_evalue 0.4071 0.2436 0.5117 hyperscore 0.4170 0.2262 0.2455 delta_hyperscore 0.4639 0.5467 0.2742 matched_ion_num -0.6562 -0.7105 -0.6882 complementary_ions -0.3138 -0.2602 -0.1832 ion_series 0.0405 0.0799 -0.0292 weighted_average_abs_fragment_ppm 0.0549 0.1934 0.2746 peptide_length 0.0000 0.0000 0.0000 ntt -0.1714 -0.0626 -0.1660 nmc 0.0000 0.0000 0.0000 charge_1 -0.0358 0.0015 0.0367 charge_2 0.0428 -0.0067 -0.0349 charge_3 -0.0170 0.0204 -0.0050 charge_4 -0.0041 -0.0177 -0.0213 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.1843 -0.2380 -0.1311 15.9949M 1.0202 1.1526 1.1455 unweighted_spectral_entropy 0.0620 -0.0916 -0.0294 delta_RT_loess 1.6240 1.5420 1.6171 m0 Found 4483 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 4978 target PSMs and 487 decoy PSMs. Calculating q values. Final list yields 4486 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 2.532 cpu seconds or 3 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-131_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-131_percolator_decoy_psms.tsv S22049-Arjun-131_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-131_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-131_percolator_decoy_psms.tsv S22049-Arjun-131_edited.pin Started Wed Mar 8 10:38:42 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-131_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 57680 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 53944 positives and 3736 negatives, size ratio=14.439 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 33011 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 33036 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 33029 training set positives with q<0.01 in that direction. Found 49545 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.209 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 50335 PSMs with q<0.01 Iteration 2: Estimated 50484 PSMs with q<0.01 Iteration 3: Estimated 50575 PSMs with q<0.01 Iteration 4: Estimated 50606 PSMs with q<0.01 Iteration 5: Estimated 50612 PSMs with q<0.01 Iteration 6: Estimated 50616 PSMs with q<0.01 Iteration 7: Estimated 50618 PSMs with q<0.01 Iteration 8: Estimated 50619 PSMs with q<0.01 Iteration 9: Estimated 50619 PSMs with q<0.01 Iteration 10: Estimated 50619 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0639 -0.0129 0.0142 retentiontime 0.0000 0.0000 0.0000 rank -0.2114 -0.1937 -0.2148 abs_ppm -0.1029 -0.0946 -0.1006 isotope_errors -0.5616 -0.6809 -0.7033 log10_evalue 0.4234 0.5748 0.4311 hyperscore 0.4533 0.4219 0.3763 delta_hyperscore 0.7377 0.7788 0.5450 matched_ion_num -0.7003 -0.7403 -0.6403 complementary_ions -0.1092 -0.1804 -0.1327 ion_series 0.0255 0.0234 0.0098 weighted_average_abs_fragment_ppm 0.2180 0.1755 0.1090 peptide_length 0.0000 0.0000 0.0000 ntt -0.2280 -0.1746 -0.1876 nmc 0.0000 0.0000 0.0000 charge_1 0.0139 0.0066 -0.0134 charge_2 -0.0437 -0.0369 -0.0252 charge_3 0.1447 0.1473 0.1883 charge_4 -0.0193 -0.0175 -0.0156 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0391 -0.0342 -0.0383 15.9949M 0.5072 0.5465 0.4887 unweighted_spectral_entropy -0.5549 -0.5426 -0.5535 delta_RT_loess 2.3129 2.2176 2.1886 m0 Found 50612 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 53944 target PSMs and 3736 decoy PSMs. Calculating q values. Final list yields 50613 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.19 cpu seconds or 13 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-108_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-108_percolator_decoy_psms.tsv S22049-Arjun-108_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-108_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-108_percolator_decoy_psms.tsv S22049-Arjun-108_edited.pin Started Wed Mar 8 10:38:57 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-108_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 58619 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 54864 positives and 3755 negatives, size ratio=14.6109 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 33763 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 33750 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 33672 training set positives with q<0.01 in that direction. Found 50547 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.95 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 51259 PSMs with q<0.01 Iteration 2: Estimated 51432 PSMs with q<0.01 Iteration 3: Estimated 51491 PSMs with q<0.01 Iteration 4: Estimated 51499 PSMs with q<0.01 Iteration 5: Estimated 51504 PSMs with q<0.01 Iteration 6: Estimated 51507 PSMs with q<0.01 Iteration 7: Estimated 51509 PSMs with q<0.01 Iteration 8: Estimated 51511 PSMs with q<0.01 Iteration 9: Estimated 51512 PSMs with q<0.01 Iteration 10: Estimated 51512 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0545 -0.0758 -0.0123 retentiontime 0.0000 0.0000 0.0000 rank -0.2012 -0.1968 -0.2159 abs_ppm -0.0635 -0.1053 -0.0757 isotope_errors -0.2738 -0.3172 -0.2096 log10_evalue 0.8900 0.7345 1.0201 hyperscore 0.4880 0.5791 0.5953 delta_hyperscore 0.4694 0.3914 0.1974 matched_ion_num -0.7211 -0.5777 -0.5394 complementary_ions -0.0915 -0.0380 -0.0819 ion_series -0.0176 -0.0309 -0.0111 weighted_average_abs_fragment_ppm 0.2257 0.2813 0.2059 peptide_length 0.0000 0.0000 0.0000 ntt -0.1856 -0.1674 -0.1621 nmc 0.0000 0.0000 0.0000 charge_1 0.0097 0.0188 0.0098 charge_2 -0.0132 -0.0123 -0.0129 charge_3 0.0079 -0.0396 0.0060 charge_4 0.0120 0.0640 0.0131 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0120 -0.0171 0.0088 15.9949M 0.5305 0.5125 0.5167 unweighted_spectral_entropy -0.5582 -0.5404 -0.5353 delta_RT_loess 2.2292 2.2786 2.2179 m0 Found 51521 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 54864 target PSMs and 3755 decoy PSMs. Calculating q values. Final list yields 51522 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 11.44 cpu seconds or 12 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-66-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-66-2nd_percolator_decoy_psms.tsv S22049-Arjun-66-2nd_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-66-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-66-2nd_percolator_decoy_psms.tsv S22049-Arjun-66-2nd_edited.pin Started Wed Mar 8 10:39:11 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-66-2nd_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 73646 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 68732 positives and 4914 negatives, size ratio=13.987 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 41707 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 41858 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 42023 training set positives with q<0.01 in that direction. Found 62827 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.198 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 64041 PSMs with q<0.01 Iteration 2: Estimated 64282 PSMs with q<0.01 Iteration 3: Estimated 64352 PSMs with q<0.01 Iteration 4: Estimated 64372 PSMs with q<0.01 Iteration 5: Estimated 64373 PSMs with q<0.01 Iteration 6: Estimated 64373 PSMs with q<0.01 Iteration 7: Estimated 64372 PSMs with q<0.01 Iteration 8: Estimated 64373 PSMs with q<0.01 Iteration 9: Estimated 64380 PSMs with q<0.01 Iteration 10: Estimated 64381 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0224 0.0193 0.0170 retentiontime 0.0000 0.0000 0.0000 rank -0.2325 -0.2363 -0.2465 abs_ppm -0.1192 -0.1257 -0.0864 isotope_errors -0.4377 -0.8520 -0.8584 log10_evalue 0.4276 0.2543 -0.0025 hyperscore 0.6569 0.5086 0.5143 delta_hyperscore 0.8635 0.7599 1.1658 matched_ion_num -0.8131 -0.8805 -0.9332 complementary_ions -0.0968 0.0311 -0.0886 ion_series 0.0038 -0.0197 -0.0212 weighted_average_abs_fragment_ppm 0.1639 0.1740 0.1019 peptide_length 0.0000 0.0000 0.0000 ntt -0.1827 -0.2025 -0.1758 nmc 0.0000 0.0000 0.0000 charge_1 0.0302 0.0042 0.0213 charge_2 -0.0378 -0.0115 -0.0283 charge_3 0.0264 0.0177 0.0248 charge_4 -0.0005 0.0388 -0.0011 charge_5 -0.0090 -0.0095 -0.0093 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0228 -0.0071 -0.0069 15.9949M 0.5180 0.5124 0.5054 unweighted_spectral_entropy -0.4406 -0.4952 -0.4893 delta_RT_loess 2.4477 2.5649 2.5221 m0 Found 64375 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 68732 target PSMs and 4914 decoy PSMs. Calculating q values. Final list yields 64376 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 21.53 cpu seconds or 21 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-127_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-127_percolator_decoy_psms.tsv S22049-Arjun-127_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-127_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-127_percolator_decoy_psms.tsv S22049-Arjun-127_edited.pin Started Wed Mar 8 10:39:34 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-127_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 52267 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 48359 positives and 3908 negatives, size ratio=12.3744 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 28901 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 29087 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 28845 training set positives with q<0.01 in that direction. Found 43396 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.845 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 44313 PSMs with q<0.01 Iteration 2: Estimated 44463 PSMs with q<0.01 Iteration 3: Estimated 44555 PSMs with q<0.01 Iteration 4: Estimated 44603 PSMs with q<0.01 Iteration 5: Estimated 44617 PSMs with q<0.01 Iteration 6: Estimated 44627 PSMs with q<0.01 Iteration 7: Estimated 44627 PSMs with q<0.01 Iteration 8: Estimated 44631 PSMs with q<0.01 Iteration 9: Estimated 44635 PSMs with q<0.01 Iteration 10: Estimated 44634 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0982 0.0372 0.0810 retentiontime 0.0000 0.0000 0.0000 rank -0.1532 -0.1934 -0.1543 abs_ppm -0.1168 -0.1132 -0.1112 isotope_errors -0.5865 -0.7038 -0.6866 log10_evalue 0.5181 0.5277 0.2872 hyperscore 0.4195 0.5531 0.4549 delta_hyperscore 0.5195 0.1677 0.7434 matched_ion_num -0.6458 -0.4962 -0.5635 complementary_ions -0.1050 -0.0158 -0.1377 ion_series -0.0232 -0.0420 -0.0234 weighted_average_abs_fragment_ppm 0.1385 0.2552 0.1581 peptide_length 0.0000 0.0000 0.0000 ntt -0.1296 -0.1345 -0.1191 nmc 0.0000 0.0000 0.0000 charge_1 -0.0012 0.0224 -0.0018 charge_2 -0.0283 -0.0275 -0.0055 charge_3 0.1998 0.0339 0.0499 charge_4 0.0000 0.0000 0.0000 charge_5 -0.0093 -0.0099 -0.0096 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0135 0.0228 0.0162 15.9949M 0.5497 0.5650 0.5191 unweighted_spectral_entropy -0.5205 -0.5524 -0.5180 delta_RT_loess 2.1198 2.2536 2.1972 m0 Found 44627 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 48359 target PSMs and 3908 decoy PSMs. Calculating q values. Final list yields 44627 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.64 cpu seconds or 15 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-58-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-58-2nd_percolator_decoy_psms.tsv S22049-Arjun-58-2nd_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-58-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-58-2nd_percolator_decoy_psms.tsv S22049-Arjun-58-2nd_edited.pin Started Wed Mar 8 10:39:51 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-58-2nd_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 66075 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 62030 positives and 4045 negatives, size ratio=15.335 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 38023 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 38213 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 37936 training set positives with q<0.01 in that direction. Found 57103 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.093 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 58118 PSMs with q<0.01 Iteration 2: Estimated 58389 PSMs with q<0.01 Iteration 3: Estimated 58451 PSMs with q<0.01 Iteration 4: Estimated 58468 PSMs with q<0.01 Iteration 5: Estimated 58476 PSMs with q<0.01 Iteration 6: Estimated 58476 PSMs with q<0.01 Iteration 7: Estimated 58475 PSMs with q<0.01 Iteration 8: Estimated 58474 PSMs with q<0.01 Iteration 9: Estimated 58474 PSMs with q<0.01 Iteration 10: Estimated 58472 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0767 0.0942 0.0781 retentiontime 0.0000 0.0000 0.0000 rank -0.2067 -0.1904 -0.2054 abs_ppm -0.1260 -0.0860 -0.1232 isotope_errors -0.6244 -0.4978 -0.8419 log10_evalue 0.3743 1.3969 0.1006 hyperscore 0.4852 0.4716 0.4479 delta_hyperscore 0.6374 -0.1091 0.5227 matched_ion_num -0.7444 -0.9226 -0.7532 complementary_ions -0.0555 0.1163 0.1267 ion_series -0.0548 -0.0413 -0.0479 weighted_average_abs_fragment_ppm 0.0994 0.0919 0.1117 peptide_length 0.0000 0.0000 0.0000 ntt -0.1872 -0.1486 -0.1773 nmc 0.0000 0.0000 0.0000 charge_1 0.0057 0.0283 -0.0076 charge_2 -0.0202 -0.0414 -0.0145 charge_3 0.0539 0.0298 0.0790 charge_4 -0.0231 0.0514 -0.0182 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0025 0.0161 -0.0350 15.9949M 0.4840 0.5173 0.4965 unweighted_spectral_entropy -0.6095 -0.4212 -0.5764 delta_RT_loess 2.3416 1.8993 2.3555 m0 Found 58431 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 62030 target PSMs and 4045 decoy PSMs. Calculating q values. Final list yields 58435 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.8 cpu seconds or 15 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-53_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-53_percolator_decoy_psms.tsv S22049-Arjun-53_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-53_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-53_percolator_decoy_psms.tsv S22049-Arjun-53_edited.pin Started Wed Mar 8 10:40:08 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-53_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 76576 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 71459 positives and 5117 negatives, size ratio=13.965 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 43459 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 43707 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 43680 training set positives with q<0.01 in that direction. Found 65418 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.306 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 66529 PSMs with q<0.01 Iteration 2: Estimated 66767 PSMs with q<0.01 Iteration 3: Estimated 66853 PSMs with q<0.01 Iteration 4: Estimated 66873 PSMs with q<0.01 Iteration 5: Estimated 66886 PSMs with q<0.01 Iteration 6: Estimated 66886 PSMs with q<0.01 Iteration 7: Estimated 66882 PSMs with q<0.01 Iteration 8: Estimated 66881 PSMs with q<0.01 Iteration 9: Estimated 66886 PSMs with q<0.01 Iteration 10: Estimated 66881 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0675 0.1249 0.0964 retentiontime 0.0000 0.0000 0.0000 rank -0.2360 -0.2054 -0.1704 abs_ppm -0.1010 -0.1110 -0.1304 isotope_errors -0.7070 -0.8002 -0.9626 log10_evalue 0.5019 0.6827 0.9055 hyperscore 0.6648 0.6182 0.7210 delta_hyperscore 0.7174 0.2897 0.2822 matched_ion_num -0.7643 -0.7493 -0.7667 complementary_ions -0.3148 -0.0859 -0.0362 ion_series -0.0701 -0.0442 -0.0922 weighted_average_abs_fragment_ppm 0.1263 0.0600 0.1036 peptide_length 0.0000 0.0000 0.0000 ntt -0.2164 -0.2061 -0.2302 nmc 0.0000 0.0000 0.0000 charge_1 0.0252 -0.0040 0.0029 charge_2 -0.0260 -0.0007 -0.0161 charge_3 0.0001 0.0138 0.0471 charge_4 0.0077 0.0242 0.0248 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0183 0.0092 -0.0070 15.9949M 0.5704 0.5675 0.5206 unweighted_spectral_entropy -0.5430 -0.4855 -0.4037 delta_RT_loess 2.5076 2.1901 2.3720 m0 Found 66875 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 71459 target PSMs and 5117 decoy PSMs. Calculating q values. Final list yields 66882 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.32 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-7_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-7_percolator_decoy_psms.tsv S22049-Arjun-7_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-7_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-7_percolator_decoy_psms.tsv S22049-Arjun-7_edited.pin Started Wed Mar 8 10:40:27 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-7_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 76923 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 71712 positives and 5211 negatives, size ratio=13.7617 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 43777 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 43698 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 43728 training set positives with q<0.01 in that direction. Found 65595 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.269 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 66837 PSMs with q<0.01 Iteration 2: Estimated 67042 PSMs with q<0.01 Iteration 3: Estimated 67135 PSMs with q<0.01 Iteration 4: Estimated 67167 PSMs with q<0.01 Iteration 5: Estimated 67164 PSMs with q<0.01 Iteration 6: Estimated 67163 PSMs with q<0.01 Iteration 7: Estimated 67165 PSMs with q<0.01 Iteration 8: Estimated 67164 PSMs with q<0.01 Iteration 9: Estimated 67163 PSMs with q<0.01 Iteration 10: Estimated 67165 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0851 0.0794 0.0692 retentiontime 0.0000 0.0000 0.0000 rank -0.2124 -0.2256 -0.2546 abs_ppm -0.1272 -0.1158 -0.1502 isotope_errors -0.4421 -0.2008 -0.4560 log10_evalue 0.9137 0.8847 0.9599 hyperscore 0.8138 0.7208 0.6978 delta_hyperscore 0.7543 0.7180 0.7566 matched_ion_num -0.8616 -0.8875 -0.9410 complementary_ions 0.0376 -0.0652 -0.1041 ion_series -0.0138 -0.0077 -0.0305 weighted_average_abs_fragment_ppm 0.0885 0.0720 0.1076 peptide_length 0.0000 0.0000 0.0000 ntt -0.1290 -0.1441 -0.1850 nmc 0.0000 0.0000 0.0000 charge_1 -0.0230 -0.0043 0.0177 charge_2 0.0272 -0.0009 -0.0228 charge_3 -0.0071 0.0202 0.0061 charge_4 -0.0146 -0.0134 0.0282 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0467 -0.0330 -0.0337 15.9949M 0.5176 0.5587 0.5397 unweighted_spectral_entropy -0.5608 -0.5487 -0.5562 delta_RT_loess 2.8163 2.5574 2.9281 m0 Found 67139 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 71712 target PSMs and 5211 decoy PSMs. Calculating q values. Final list yields 67141 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 19.25 cpu seconds or 19 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-101_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-101_percolator_decoy_psms.tsv S22049-Arjun-101_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-101_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-101_percolator_decoy_psms.tsv S22049-Arjun-101_edited.pin Started Wed Mar 8 10:40:48 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-101_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 65112 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 61513 positives and 3599 negatives, size ratio=17.0917 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 38140 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 38158 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 38306 training set positives with q<0.01 in that direction. Found 57311 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.375 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 57970 PSMs with q<0.01 Iteration 2: Estimated 58158 PSMs with q<0.01 Iteration 3: Estimated 58231 PSMs with q<0.01 Iteration 4: Estimated 58266 PSMs with q<0.01 Iteration 5: Estimated 58273 PSMs with q<0.01 Iteration 6: Estimated 58278 PSMs with q<0.01 Iteration 7: Estimated 58277 PSMs with q<0.01 Iteration 8: Estimated 58278 PSMs with q<0.01 Iteration 9: Estimated 58276 PSMs with q<0.01 Iteration 10: Estimated 58278 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0083 -0.0337 0.0433 retentiontime 0.0000 0.0000 0.0000 rank -0.1812 -0.1640 -0.1757 abs_ppm -0.0946 -0.0709 -0.0895 isotope_errors -0.6579 -0.4723 -0.5093 log10_evalue 0.5451 0.9350 0.7443 hyperscore 0.4734 0.4724 0.5132 delta_hyperscore 0.2912 0.5669 0.4070 matched_ion_num -0.6276 -0.7781 -0.6692 complementary_ions -0.1248 -0.1296 -0.1475 ion_series -0.0125 -0.0600 -0.0042 weighted_average_abs_fragment_ppm 0.1261 0.2283 0.1298 peptide_length 0.0000 0.0000 0.0000 ntt -0.1586 -0.1410 -0.1535 nmc 0.0000 0.0000 0.0000 charge_1 0.0115 -0.0036 0.0099 charge_2 -0.0205 -0.0154 -0.0233 charge_3 -0.0240 0.0109 -0.0189 charge_4 0.1384 0.1164 0.1589 charge_5 -0.0098 -0.0088 -0.0111 charge_6 -0.0084 -0.0089 -0.0092 charge_7_or_more -0.0447 -0.0808 -0.0322 15.9949M 0.5128 0.4947 0.5338 unweighted_spectral_entropy -0.4669 -0.4757 -0.4698 delta_RT_loess 2.1495 2.2620 2.3542 m0 Found 58266 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 61513 target PSMs and 3599 decoy PSMs. Calculating q values. Final list yields 58267 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.89 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-56_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-56_percolator_decoy_psms.tsv S22049-Arjun-56_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-56_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-56_percolator_decoy_psms.tsv S22049-Arjun-56_edited.pin Started Wed Mar 8 10:41:07 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-56_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 73236 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 68607 positives and 4629 negatives, size ratio=14.8211 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 41912 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 42095 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 42049 training set positives with q<0.01 in that direction. Found 62994 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.222 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 64144 PSMs with q<0.01 Iteration 2: Estimated 64376 PSMs with q<0.01 Iteration 3: Estimated 64501 PSMs with q<0.01 Iteration 4: Estimated 64520 PSMs with q<0.01 Iteration 5: Estimated 64529 PSMs with q<0.01 Iteration 6: Estimated 64519 PSMs with q<0.01 Iteration 7: Estimated 64521 PSMs with q<0.01 Iteration 8: Estimated 64522 PSMs with q<0.01 Iteration 9: Estimated 64522 PSMs with q<0.01 Iteration 10: Estimated 64523 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0681 0.0861 0.0154 retentiontime 0.0000 0.0000 0.0000 rank -0.1486 -0.1724 -0.2113 abs_ppm -0.1477 -0.1621 -0.1472 isotope_errors -0.9104 -0.8807 -0.8139 log10_evalue 0.7569 0.3400 0.3875 hyperscore 0.6371 0.5230 0.5477 delta_hyperscore 0.5656 0.7232 0.7522 matched_ion_num -0.6998 -0.5886 -0.6994 complementary_ions 0.0216 0.0188 -0.1437 ion_series -0.0408 -0.0659 -0.0195 weighted_average_abs_fragment_ppm 0.2095 0.1308 0.1449 peptide_length 0.0000 0.0000 0.0000 ntt -0.1720 -0.1389 -0.1672 nmc 0.0000 0.0000 0.0000 charge_1 0.0029 -0.0106 0.0059 charge_2 -0.0256 -0.0041 -0.0150 charge_3 0.0741 0.0492 0.0316 charge_4 0.0224 0.0124 -0.0012 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0377 -0.0291 -0.0422 15.9949M 0.4000 0.4164 0.4953 unweighted_spectral_entropy -0.3742 -0.3409 -0.4274 delta_RT_loess 2.3531 2.0998 2.5743 m0 Found 64507 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 68607 target PSMs and 4629 decoy PSMs. Calculating q values. Final list yields 64507 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.67 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-119_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-119_percolator_decoy_psms.tsv S22049-Arjun-119_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-119_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-119_percolator_decoy_psms.tsv S22049-Arjun-119_edited.pin Started Wed Mar 8 10:41:25 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-119_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 56612 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 53118 positives and 3494 negatives, size ratio=15.2026 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 32604 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 32622 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 32618 training set positives with q<0.01 in that direction. Found 48897 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.922 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 49644 PSMs with q<0.01 Iteration 2: Estimated 49867 PSMs with q<0.01 Iteration 3: Estimated 49939 PSMs with q<0.01 Iteration 4: Estimated 49969 PSMs with q<0.01 Iteration 5: Estimated 49972 PSMs with q<0.01 Iteration 6: Estimated 49966 PSMs with q<0.01 Iteration 7: Estimated 49970 PSMs with q<0.01 Iteration 8: Estimated 49971 PSMs with q<0.01 Iteration 9: Estimated 49970 PSMs with q<0.01 Iteration 10: Estimated 49969 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0682 -0.0544 -0.0642 retentiontime 0.0000 0.0000 0.0000 rank -0.2213 -0.2064 -0.1936 abs_ppm -0.0540 -0.0664 -0.0606 isotope_errors -0.5503 -0.6149 -0.8123 log10_evalue 1.1288 0.2542 0.9620 hyperscore 0.2707 0.5853 0.4295 delta_hyperscore -0.1185 0.2937 -0.0234 matched_ion_num -0.5355 -0.4366 -0.7243 complementary_ions 0.0360 0.0867 0.0773 ion_series -0.0120 -0.0252 0.0138 weighted_average_abs_fragment_ppm 0.1717 0.1682 0.1469 peptide_length 0.0000 0.0000 0.0000 ntt -0.1456 -0.1567 -0.1241 nmc 0.0000 0.0000 0.0000 charge_1 -0.0154 -0.0167 -0.0089 charge_2 0.0219 0.0069 0.0156 charge_3 -0.0276 0.0451 -0.0278 charge_4 -0.0012 -0.0091 -0.0079 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0320 -0.0161 -0.0519 15.9949M 0.4228 0.4638 0.4463 unweighted_spectral_entropy -0.4395 -0.5857 -0.4731 delta_RT_loess 1.5031 2.1651 2.0468 m0 Found 49952 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 53118 target PSMs and 3494 decoy PSMs. Calculating q values. Final list yields 49955 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 17.89 cpu seconds or 18 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-29_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-29_percolator_decoy_psms.tsv S22049-Arjun-29_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-29_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-29_percolator_decoy_psms.tsv S22049-Arjun-29_edited.pin Started Wed Mar 8 10:41:44 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-29_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 79232 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 73386 positives and 5846 negatives, size ratio=12.5532 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 44069 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 44173 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 44424 training set positives with q<0.01 in that direction. Found 66336 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.315 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 67772 PSMs with q<0.01 Iteration 2: Estimated 68011 PSMs with q<0.01 Iteration 3: Estimated 68081 PSMs with q<0.01 Iteration 4: Estimated 68096 PSMs with q<0.01 Iteration 5: Estimated 68095 PSMs with q<0.01 Iteration 6: Estimated 68110 PSMs with q<0.01 Iteration 7: Estimated 68107 PSMs with q<0.01 Iteration 8: Estimated 68109 PSMs with q<0.01 Iteration 9: Estimated 68113 PSMs with q<0.01 Iteration 10: Estimated 68112 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0697 0.0697 0.0762 retentiontime 0.0000 0.0000 0.0000 rank -0.2424 -0.2413 -0.2355 abs_ppm -0.1179 -0.1375 -0.1201 isotope_errors -0.2879 -0.3503 -0.3595 log10_evalue 0.7059 0.6276 0.6397 hyperscore 0.7276 0.6933 0.7900 delta_hyperscore 0.5960 1.0102 1.0492 matched_ion_num -0.7862 -0.9000 -0.9566 complementary_ions -0.1387 -0.2012 -0.2025 ion_series -0.0745 -0.0436 -0.0498 weighted_average_abs_fragment_ppm 0.1150 0.1282 0.0941 peptide_length 0.0000 0.0000 0.0000 ntt -0.1794 -0.1732 -0.1855 nmc 0.0000 0.0000 0.0000 charge_1 0.0100 0.0246 0.0261 charge_2 -0.0082 -0.0198 -0.0031 charge_3 -0.0026 -0.0055 -0.0577 charge_4 -0.0174 -0.0263 -0.0317 charge_5 0.0350 -0.0131 0.0352 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0543 -0.0354 -0.0194 15.9949M 0.6384 0.5910 0.6340 unweighted_spectral_entropy -0.6396 -0.6265 -0.6209 delta_RT_loess 2.3629 2.5840 2.7306 m0 Found 68085 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 73386 target PSMs and 5846 decoy PSMs. Calculating q values. Final list yields 68087 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 17.47 cpu seconds or 17 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-143_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-143_percolator_decoy_psms.tsv S22049-Arjun-143_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-143_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-143_percolator_decoy_psms.tsv S22049-Arjun-143_edited.pin Started Wed Mar 8 10:42:04 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-143_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 50957 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 47585 positives and 3372 negatives, size ratio=14.1118 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 29151 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 29055 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 29063 training set positives with q<0.01 in that direction. Found 43617 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.801 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 44229 PSMs with q<0.01 Iteration 2: Estimated 44334 PSMs with q<0.01 Iteration 3: Estimated 44374 PSMs with q<0.01 Iteration 4: Estimated 44397 PSMs with q<0.01 Iteration 5: Estimated 44404 PSMs with q<0.01 Iteration 6: Estimated 44406 PSMs with q<0.01 Iteration 7: Estimated 44407 PSMs with q<0.01 Iteration 8: Estimated 44410 PSMs with q<0.01 Iteration 9: Estimated 44418 PSMs with q<0.01 Iteration 10: Estimated 44420 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1088 0.0432 0.0747 retentiontime 0.0000 0.0000 0.0000 rank -0.1687 -0.1889 -0.1710 abs_ppm -0.1263 -0.0875 -0.1211 isotope_errors -0.6314 -0.6021 -0.8935 log10_evalue 0.1964 0.0835 -0.2550 hyperscore 0.6481 0.5853 0.6609 delta_hyperscore 1.2218 1.6326 1.4931 matched_ion_num -0.8947 -1.0203 -0.8639 complementary_ions -0.2913 -0.2042 -0.2191 ion_series -0.0480 0.0051 -0.0056 weighted_average_abs_fragment_ppm -0.0367 0.0537 0.0067 peptide_length 0.0000 0.0000 0.0000 ntt -0.0685 -0.1413 -0.0244 nmc 0.0000 0.0000 0.0000 charge_1 -0.0342 -0.0122 0.0055 charge_2 0.0380 0.0223 0.0062 charge_3 -0.0109 -0.0430 -0.0518 charge_4 -0.0278 0.0023 0.0102 charge_5 -0.0113 -0.0122 -0.0122 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0251 -0.0230 -0.0207 15.9949M 0.5920 0.5696 0.5821 unweighted_spectral_entropy -0.4820 -0.4910 -0.4429 delta_RT_loess 2.5593 2.7470 2.7313 m0 Found 44394 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 47585 target PSMs and 3372 decoy PSMs. Calculating q values. Final list yields 44394 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 9.894 cpu seconds or 10 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-43_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-43_percolator_decoy_psms.tsv S22049-Arjun-43_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-43_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-43_percolator_decoy_psms.tsv S22049-Arjun-43_edited.pin Started Wed Mar 8 10:42:16 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-43_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 72896 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 68456 positives and 4440 negatives, size ratio=15.418 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 42137 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 42218 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 42375 training set positives with q<0.01 in that direction. Found 63377 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.296 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 64336 PSMs with q<0.01 Iteration 2: Estimated 64549 PSMs with q<0.01 Iteration 3: Estimated 64605 PSMs with q<0.01 Iteration 4: Estimated 64623 PSMs with q<0.01 Iteration 5: Estimated 64634 PSMs with q<0.01 Iteration 6: Estimated 64634 PSMs with q<0.01 Iteration 7: Estimated 64638 PSMs with q<0.01 Iteration 8: Estimated 64644 PSMs with q<0.01 Iteration 9: Estimated 64643 PSMs with q<0.01 Iteration 10: Estimated 64643 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0497 0.0234 0.0144 retentiontime 0.0000 0.0000 0.0000 rank -0.2201 -0.1669 -0.2223 abs_ppm -0.0901 -0.1577 -0.1365 isotope_errors -0.7509 -0.6296 -0.8413 log10_evalue 0.9102 0.7791 0.8450 hyperscore 0.3922 0.5082 0.3919 delta_hyperscore 0.2452 0.5696 0.5230 matched_ion_num -0.7073 -0.7683 -0.9372 complementary_ions -0.0685 -0.1725 -0.0132 ion_series -0.0099 0.0089 -0.0124 weighted_average_abs_fragment_ppm 0.0825 0.1622 0.1519 peptide_length 0.0000 0.0000 0.0000 ntt -0.2014 -0.1918 -0.1701 nmc 0.0000 0.0000 0.0000 charge_1 -0.0182 -0.0039 -0.0213 charge_2 0.0103 0.0110 0.0105 charge_3 0.0083 -0.0282 0.0044 charge_4 0.0568 0.0263 0.1018 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0130 -0.0310 -0.0543 15.9949M 0.5245 0.5327 0.4936 unweighted_spectral_entropy -0.5799 -0.4889 -0.4999 delta_RT_loess 2.5717 2.5972 2.4481 m0 Found 64605 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 68456 target PSMs and 4440 decoy PSMs. Calculating q values. Final list yields 64606 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.52 cpu seconds or 15 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-12_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-12_percolator_decoy_psms.tsv S22049-Arjun-12_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-12_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-12_percolator_decoy_psms.tsv S22049-Arjun-12_edited.pin Started Wed Mar 8 10:42:33 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-12_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 71145 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 66024 positives and 5121 negatives, size ratio=12.8928 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 40022 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 39833 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 39960 training set positives with q<0.01 in that direction. Found 59892 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.197 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 61011 PSMs with q<0.01 Iteration 2: Estimated 61240 PSMs with q<0.01 Iteration 3: Estimated 61343 PSMs with q<0.01 Iteration 4: Estimated 61377 PSMs with q<0.01 Iteration 5: Estimated 61385 PSMs with q<0.01 Iteration 6: Estimated 61381 PSMs with q<0.01 Iteration 7: Estimated 61379 PSMs with q<0.01 Iteration 8: Estimated 61380 PSMs with q<0.01 Iteration 9: Estimated 61378 PSMs with q<0.01 Iteration 10: Estimated 61382 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0393 0.0466 0.0269 retentiontime 0.0000 0.0000 0.0000 rank -0.2329 -0.2225 -0.1771 abs_ppm -0.1313 -0.1073 -0.1408 isotope_errors -0.6669 -0.6429 -0.7688 log10_evalue 0.4451 0.2579 0.5224 hyperscore 0.4878 0.6541 0.5424 delta_hyperscore 0.7970 0.6425 0.5977 matched_ion_num -0.7923 -0.6653 -0.8842 complementary_ions -0.1009 0.1158 -0.1083 ion_series -0.0150 -0.0314 -0.0403 weighted_average_abs_fragment_ppm 0.1510 0.1849 0.1729 peptide_length 0.0000 0.0000 0.0000 ntt -0.1645 -0.1602 -0.1680 nmc 0.0000 0.0000 0.0000 charge_1 -0.0138 0.0286 0.0274 charge_2 0.0028 -0.0247 -0.0242 charge_3 0.0338 -0.0168 -0.0151 charge_4 0.0027 0.0104 0.0123 charge_5 -0.0073 -0.0073 -0.0090 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0239 -0.0041 -0.0420 15.9949M 0.5487 0.5411 0.5617 unweighted_spectral_entropy -0.5575 -0.5501 -0.6354 delta_RT_loess 2.1871 1.9402 2.4382 m0 Found 61383 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 66024 target PSMs and 5121 decoy PSMs. Calculating q values. Final list yields 61383 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.68 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-97_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-97_percolator_decoy_psms.tsv S22049-Arjun-97_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-97_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-97_percolator_decoy_psms.tsv S22049-Arjun-97_edited.pin Started Wed Mar 8 10:42:51 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-97_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 34555 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 28642 positives and 5913 negatives, size ratio=4.8439 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 13822 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 13940 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 13850 training set positives with q<0.01 in that direction. Found 20753 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.527 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 22190 PSMs with q<0.01 Iteration 2: Estimated 22420 PSMs with q<0.01 Iteration 3: Estimated 22498 PSMs with q<0.01 Iteration 4: Estimated 22528 PSMs with q<0.01 Iteration 5: Estimated 22533 PSMs with q<0.01 Iteration 6: Estimated 22538 PSMs with q<0.01 Iteration 7: Estimated 22540 PSMs with q<0.01 Iteration 8: Estimated 22538 PSMs with q<0.01 Iteration 9: Estimated 22538 PSMs with q<0.01 Iteration 10: Estimated 22537 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.1500 -0.0805 -0.1031 retentiontime 0.0000 0.0000 0.0000 rank -0.1641 -0.1600 -0.1883 abs_ppm -0.1531 -0.1871 -0.1529 isotope_errors -0.6967 -0.7964 -0.6754 log10_evalue -1.3843 -1.4661 -1.4054 hyperscore 0.4597 0.3086 0.3795 delta_hyperscore 2.7552 2.4310 2.5074 matched_ion_num -1.0212 -0.8723 -0.8557 complementary_ions -0.2403 -0.1173 -0.0948 ion_series -0.0440 0.0063 0.0239 weighted_average_abs_fragment_ppm 0.3521 0.3698 0.3661 peptide_length 0.0000 0.0000 0.0000 ntt -0.1062 -0.1224 -0.1635 nmc 0.0000 0.0000 0.0000 charge_1 0.0099 -0.0166 -0.0086 charge_2 0.0095 0.0399 -0.0041 charge_3 -0.0639 -0.0791 0.0536 charge_4 -0.0245 -0.0109 -0.0259 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0803 -0.0539 -0.0649 15.9949M 1.1946 1.2291 1.1628 unweighted_spectral_entropy -1.2566 -1.0705 -1.1614 delta_RT_loess 0.8213 0.7021 0.7660 m0 Found 22511 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 28642 target PSMs and 5913 decoy PSMs. Calculating q values. Final list yields 22511 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 5.937 cpu seconds or 6 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-16_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-16_percolator_decoy_psms.tsv S22049-Arjun-16_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-16_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-16_percolator_decoy_psms.tsv S22049-Arjun-16_edited.pin Started Wed Mar 8 10:42:58 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-16_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 72829 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 67268 positives and 5561 negatives, size ratio=12.0964 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 40150 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 40059 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 40173 training set positives with q<0.01 in that direction. Found 60164 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.338 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 61703 PSMs with q<0.01 Iteration 2: Estimated 62034 PSMs with q<0.01 Iteration 3: Estimated 62123 PSMs with q<0.01 Iteration 4: Estimated 62126 PSMs with q<0.01 Iteration 5: Estimated 62127 PSMs with q<0.01 Iteration 6: Estimated 62135 PSMs with q<0.01 Iteration 7: Estimated 62132 PSMs with q<0.01 Iteration 8: Estimated 62127 PSMs with q<0.01 Iteration 9: Estimated 62130 PSMs with q<0.01 Iteration 10: Estimated 62129 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0183 0.0216 0.0471 retentiontime 0.0000 0.0000 0.0000 rank -0.2223 -0.2403 -0.2196 abs_ppm -0.1452 -0.1450 -0.1593 isotope_errors -0.8059 -0.5992 -0.6393 log10_evalue 0.3951 0.8537 0.8351 hyperscore 0.4801 0.5626 0.4309 delta_hyperscore 0.8175 0.5139 0.5180 matched_ion_num -0.8966 -0.9475 -0.7886 complementary_ions -0.1176 -0.1504 -0.1818 ion_series -0.0519 -0.0447 -0.0078 weighted_average_abs_fragment_ppm 0.1666 0.1596 0.1215 peptide_length 0.0000 0.0000 0.0000 ntt -0.1547 -0.1711 -0.1745 nmc 0.0000 0.0000 0.0000 charge_1 0.0288 0.0315 0.0034 charge_2 -0.0098 -0.0205 0.0068 charge_3 -0.0757 -0.0558 -0.0460 charge_4 0.0521 0.0712 0.0529 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0090 -0.0331 -0.0496 15.9949M 0.5491 0.6054 0.5520 unweighted_spectral_entropy -0.6975 -0.7206 -0.7569 delta_RT_loess 2.3498 2.3867 2.3336 m0 Found 62091 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 67268 target PSMs and 5561 decoy PSMs. Calculating q values. Final list yields 62093 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.59 cpu seconds or 15 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-93_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-93_percolator_decoy_psms.tsv S22049-Arjun-93_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-93_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-93_percolator_decoy_psms.tsv S22049-Arjun-93_edited.pin Started Wed Mar 8 10:43:16 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-93_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 67029 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 63005 positives and 4024 negatives, size ratio=15.6573 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 38957 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 39044 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 39089 training set positives with q<0.01 in that direction. Found 58545 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.078 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 59302 PSMs with q<0.01 Iteration 2: Estimated 59497 PSMs with q<0.01 Iteration 3: Estimated 59516 PSMs with q<0.01 Iteration 4: Estimated 59515 PSMs with q<0.01 Iteration 5: Estimated 59512 PSMs with q<0.01 Iteration 6: Estimated 59508 PSMs with q<0.01 Iteration 7: Estimated 59513 PSMs with q<0.01 Iteration 8: Estimated 59510 PSMs with q<0.01 Iteration 9: Estimated 59513 PSMs with q<0.01 Iteration 10: Estimated 59510 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0280 -0.0516 -0.0308 retentiontime 0.0000 0.0000 0.0000 rank -0.1263 -0.1870 -0.2195 abs_ppm -0.1317 -0.1433 -0.1175 isotope_errors -0.1341 -0.3291 -0.4197 log10_evalue 1.0366 0.2906 0.7812 hyperscore 0.8307 0.8345 0.5524 delta_hyperscore 0.7341 1.5551 0.8428 matched_ion_num -0.7609 -0.7873 -0.8082 complementary_ions -0.0957 -0.2625 -0.2822 ion_series -0.0649 -0.0412 -0.0536 weighted_average_abs_fragment_ppm 0.2091 0.2719 0.2138 peptide_length 0.0000 0.0000 0.0000 ntt -0.1519 -0.1461 -0.1791 nmc 0.0000 0.0000 0.0000 charge_1 -0.0050 0.0474 0.0253 charge_2 0.0079 -0.0289 -0.0164 charge_3 -0.0187 -0.0478 -0.0197 charge_4 0.0353 -0.0108 -0.0142 charge_5 0.0019 -0.0095 -0.0093 charge_6 -0.0086 -0.0105 -0.0100 charge_7_or_more -0.0451 -0.0450 -0.0562 15.9949M 0.5298 0.5059 0.5341 unweighted_spectral_entropy -0.4864 -0.5097 -0.5194 delta_RT_loess 2.2224 2.7111 2.5901 m0 Found 59477 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 63005 target PSMs and 4024 decoy PSMs. Calculating q values. Final list yields 59478 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.35 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-71_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-71_percolator_decoy_psms.tsv S22049-Arjun-71_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-71_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-71_percolator_decoy_psms.tsv S22049-Arjun-71_edited.pin Started Wed Mar 8 10:43:34 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-71_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 75892 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 70628 positives and 5264 negatives, size ratio=13.4172 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 42922 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 42850 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 42821 training set positives with q<0.01 in that direction. Found 64286 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.274 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 65604 PSMs with q<0.01 Iteration 2: Estimated 65848 PSMs with q<0.01 Iteration 3: Estimated 65923 PSMs with q<0.01 Iteration 4: Estimated 65937 PSMs with q<0.01 Iteration 5: Estimated 65944 PSMs with q<0.01 Iteration 6: Estimated 65948 PSMs with q<0.01 Iteration 7: Estimated 65948 PSMs with q<0.01 Iteration 8: Estimated 65953 PSMs with q<0.01 Iteration 9: Estimated 65951 PSMs with q<0.01 Iteration 10: Estimated 65948 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1046 0.0663 0.0188 retentiontime 0.0000 0.0000 0.0000 rank -0.1665 -0.2141 -0.2521 abs_ppm -0.1465 -0.1182 -0.1423 isotope_errors -0.4845 -0.6848 -0.7596 log10_evalue 1.1642 1.0449 0.6798 hyperscore 0.7144 0.4446 0.5753 delta_hyperscore 0.4170 0.3870 0.6108 matched_ion_num -0.8863 -0.9141 -0.9868 complementary_ions -0.0941 -0.0022 0.0131 ion_series -0.0011 0.0137 -0.0045 weighted_average_abs_fragment_ppm 0.0759 0.1531 0.1488 peptide_length 0.0000 0.0000 0.0000 ntt -0.2197 -0.2032 -0.1844 nmc 0.0000 0.0000 0.0000 charge_1 -0.0090 0.0156 0.0473 charge_2 -0.0150 -0.0099 -0.0466 charge_3 0.0767 -0.0168 -0.0050 charge_4 0.0088 -0.0121 -0.0030 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0490 -0.0273 -0.0573 15.9949M 0.5156 0.5546 0.5421 unweighted_spectral_entropy -0.4391 -0.4738 -0.5078 delta_RT_loess 2.1597 2.7431 2.7206 m0 Found 65944 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 70628 target PSMs and 5264 decoy PSMs. Calculating q values. Final list yields 65944 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.79 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-25_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-25_percolator_decoy_psms.tsv S22049-Arjun-25_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-25_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-25_percolator_decoy_psms.tsv S22049-Arjun-25_edited.pin Started Wed Mar 8 10:43:52 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-25_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 62862 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 58374 positives and 4488 negatives, size ratio=13.0067 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 35262 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 35158 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 35324 training set positives with q<0.01 in that direction. Found 52840 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.158 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 54005 PSMs with q<0.01 Iteration 2: Estimated 54247 PSMs with q<0.01 Iteration 3: Estimated 54311 PSMs with q<0.01 Iteration 4: Estimated 54337 PSMs with q<0.01 Iteration 5: Estimated 54341 PSMs with q<0.01 Iteration 6: Estimated 54351 PSMs with q<0.01 Iteration 7: Estimated 54357 PSMs with q<0.01 Iteration 8: Estimated 54354 PSMs with q<0.01 Iteration 9: Estimated 54356 PSMs with q<0.01 Iteration 10: Estimated 54354 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.1011 -0.0282 -0.0298 retentiontime 0.0000 0.0000 0.0000 rank -0.2323 -0.2304 -0.2159 abs_ppm -0.1396 -0.1298 -0.1129 isotope_errors -0.7745 -0.7569 -0.6371 log10_evalue 0.5840 0.4878 0.9905 hyperscore 0.6500 0.5368 0.5834 delta_hyperscore 0.6312 0.4861 0.3287 matched_ion_num -0.9231 -0.7317 -0.7189 complementary_ions -0.0696 0.0057 0.0033 ion_series -0.0093 -0.0041 0.0113 weighted_average_abs_fragment_ppm 0.2083 0.2061 0.1802 peptide_length 0.0000 0.0000 0.0000 ntt -0.1938 -0.1480 -0.1768 nmc 0.0000 0.0000 0.0000 charge_1 0.0199 0.0308 0.0007 charge_2 -0.0326 -0.0355 -0.0073 charge_3 0.0603 0.0240 0.0313 charge_4 0.0024 -0.0208 0.0070 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0604 -0.0753 -0.0683 15.9949M 0.5759 0.5246 0.5032 unweighted_spectral_entropy -0.5751 -0.5796 -0.5727 delta_RT_loess 2.6739 2.4466 2.3724 m0 Found 54352 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 58374 target PSMs and 4488 decoy PSMs. Calculating q values. Final list yields 54352 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.96 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-104_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-104_percolator_decoy_psms.tsv S22049-Arjun-104_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-104_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-104_percolator_decoy_psms.tsv S22049-Arjun-104_edited.pin Started Wed Mar 8 10:44:08 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-104_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 62855 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 58982 positives and 3873 negatives, size ratio=15.229 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36237 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36223 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36186 training set positives with q<0.01 in that direction. Found 54310 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.308 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55225 PSMs with q<0.01 Iteration 2: Estimated 55386 PSMs with q<0.01 Iteration 3: Estimated 55452 PSMs with q<0.01 Iteration 4: Estimated 55460 PSMs with q<0.01 Iteration 5: Estimated 55464 PSMs with q<0.01 Iteration 6: Estimated 55462 PSMs with q<0.01 Iteration 7: Estimated 55464 PSMs with q<0.01 Iteration 8: Estimated 55465 PSMs with q<0.01 Iteration 9: Estimated 55465 PSMs with q<0.01 Iteration 10: Estimated 55463 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0416 0.1165 0.0246 retentiontime 0.0000 0.0000 0.0000 rank -0.2032 -0.1758 -0.1777 abs_ppm -0.1240 -0.0990 -0.1451 isotope_errors -0.5784 -0.8048 -0.7310 log10_evalue 0.1849 1.0970 0.4437 hyperscore 0.5067 0.6011 0.3627 delta_hyperscore 0.9363 0.5045 0.8833 matched_ion_num -0.6187 -0.7934 -0.7741 complementary_ions -0.0562 0.0517 -0.1260 ion_series -0.0164 -0.0128 -0.0108 weighted_average_abs_fragment_ppm 0.1846 0.1428 0.2076 peptide_length 0.0000 0.0000 0.0000 ntt -0.1097 -0.1734 -0.1443 nmc 0.0000 0.0000 0.0000 charge_1 0.0444 0.0198 0.0565 charge_2 -0.0199 -0.0198 -0.0420 charge_3 -0.0741 -0.0059 -0.0397 charge_4 -0.0016 0.0123 -0.0197 charge_5 -0.0042 0.0002 -0.0173 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0494 -0.0371 -0.0311 15.9949M 0.4734 0.5043 0.4539 unweighted_spectral_entropy -0.5835 -0.4844 -0.6024 delta_RT_loess 2.4694 2.6430 2.5027 m0 Found 55440 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 58982 target PSMs and 3873 decoy PSMs. Calculating q values. Final list yields 55444 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 20.59 cpu seconds or 20 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-30_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-30_percolator_decoy_psms.tsv S22049-Arjun-30_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-30_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-30_percolator_decoy_psms.tsv S22049-Arjun-30_edited.pin Started Wed Mar 8 10:44:31 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-30_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 73261 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 67476 positives and 5785 negatives, size ratio=11.664 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 40259 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 40373 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 40213 training set positives with q<0.01 in that direction. Found 60434 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.305 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 61803 PSMs with q<0.01 Iteration 2: Estimated 62026 PSMs with q<0.01 Iteration 3: Estimated 62106 PSMs with q<0.01 Iteration 4: Estimated 62142 PSMs with q<0.01 Iteration 5: Estimated 62162 PSMs with q<0.01 Iteration 6: Estimated 62167 PSMs with q<0.01 Iteration 7: Estimated 62169 PSMs with q<0.01 Iteration 8: Estimated 62171 PSMs with q<0.01 Iteration 9: Estimated 62171 PSMs with q<0.01 Iteration 10: Estimated 62171 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1142 0.0947 0.1151 retentiontime 0.0000 0.0000 0.0000 rank -0.2192 -0.2262 -0.2260 abs_ppm -0.1373 -0.1777 -0.1480 isotope_errors -0.3902 -0.4838 -0.6418 log10_evalue 0.4046 0.6072 0.1354 hyperscore 0.4936 0.5472 0.4900 delta_hyperscore 0.7067 0.5383 0.7626 matched_ion_num -0.8297 -0.8403 -0.7550 complementary_ions 0.0214 0.1279 0.0975 ion_series -0.0286 -0.0549 -0.0390 weighted_average_abs_fragment_ppm 0.0716 0.1553 0.0841 peptide_length 0.0000 0.0000 0.0000 ntt -0.1446 -0.1310 -0.1354 nmc 0.0000 0.0000 0.0000 charge_1 -0.0105 0.0265 0.0023 charge_2 0.0020 -0.0273 -0.0010 charge_3 0.0372 -0.0117 -0.0155 charge_4 -0.0072 0.0763 0.0594 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0077 0.0015 0.0188 15.9949M 0.6494 0.6006 0.6224 unweighted_spectral_entropy -0.6727 -0.6011 -0.6231 delta_RT_loess 2.1418 2.3783 2.2611 m0 Found 62137 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 67476 target PSMs and 5785 decoy PSMs. Calculating q values. Final list yields 62141 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.05 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-65-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-65-2nd_percolator_decoy_psms.tsv S22049-Arjun-65-2nd_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-65-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-65-2nd_percolator_decoy_psms.tsv S22049-Arjun-65-2nd_edited.pin Started Wed Mar 8 10:44:50 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-65-2nd_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 75249 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 70358 positives and 4891 negatives, size ratio=14.3852 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 42861 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 43023 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 43102 training set positives with q<0.01 in that direction. Found 64450 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.462 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 65691 PSMs with q<0.01 Iteration 2: Estimated 65922 PSMs with q<0.01 Iteration 3: Estimated 66009 PSMs with q<0.01 Iteration 4: Estimated 66035 PSMs with q<0.01 Iteration 5: Estimated 66038 PSMs with q<0.01 Iteration 6: Estimated 66041 PSMs with q<0.01 Iteration 7: Estimated 66043 PSMs with q<0.01 Iteration 8: Estimated 66043 PSMs with q<0.01 Iteration 9: Estimated 66042 PSMs with q<0.01 Iteration 10: Estimated 66042 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0660 0.0307 0.0458 retentiontime 0.0000 0.0000 0.0000 rank -0.2344 -0.2578 -0.2330 abs_ppm -0.1133 -0.1040 -0.1217 isotope_errors -0.7812 -0.6744 -0.8882 log10_evalue 0.6235 0.6109 0.4494 hyperscore 0.5084 0.6220 0.4886 delta_hyperscore 0.1798 0.3025 0.4305 matched_ion_num -0.7453 -0.7747 -0.8336 complementary_ions 0.0440 0.1003 -0.0247 ion_series -0.0301 -0.0248 -0.0350 weighted_average_abs_fragment_ppm 0.1434 0.1667 0.0974 peptide_length 0.0000 0.0000 0.0000 ntt -0.1525 -0.1810 -0.1764 nmc 0.0000 0.0000 0.0000 charge_1 0.0123 0.0001 0.0033 charge_2 -0.0032 -0.0114 -0.0138 charge_3 -0.0269 0.0156 0.0311 charge_4 -0.0029 0.0641 0.0004 charge_5 -0.0089 -0.0096 -0.0092 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0086 -0.0506 -0.0277 15.9949M 0.5635 0.5890 0.5670 unweighted_spectral_entropy -0.4959 -0.4753 -0.4556 delta_RT_loess 2.4326 2.6400 2.5171 m0 Found 66014 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 70358 target PSMs and 4891 decoy PSMs. Calculating q values. Final list yields 66016 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.28 cpu seconds or 17 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-79_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-79_percolator_decoy_psms.tsv S22049-Arjun-79_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-79_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-79_percolator_decoy_psms.tsv S22049-Arjun-79_edited.pin Started Wed Mar 8 10:45:09 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-79_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 63094 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 59106 positives and 3988 negatives, size ratio=14.821 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36341 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36382 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36264 training set positives with q<0.01 in that direction. Found 54506 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.196 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55164 PSMs with q<0.01 Iteration 2: Estimated 55359 PSMs with q<0.01 Iteration 3: Estimated 55427 PSMs with q<0.01 Iteration 4: Estimated 55452 PSMs with q<0.01 Iteration 5: Estimated 55464 PSMs with q<0.01 Iteration 6: Estimated 55471 PSMs with q<0.01 Iteration 7: Estimated 55471 PSMs with q<0.01 Iteration 8: Estimated 55473 PSMs with q<0.01 Iteration 9: Estimated 55472 PSMs with q<0.01 Iteration 10: Estimated 55472 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1192 0.0524 0.0610 retentiontime 0.0000 0.0000 0.0000 rank -0.2548 -0.2314 -0.2318 abs_ppm -0.0861 -0.1046 -0.0871 isotope_errors -0.4378 -0.3445 -0.5574 log10_evalue 0.8373 1.0444 0.6728 hyperscore 0.5886 0.6612 0.6420 delta_hyperscore 0.6214 0.2405 0.4444 matched_ion_num -0.7881 -0.6824 -0.5827 complementary_ions 0.0981 0.0563 -0.0717 ion_series 0.0162 0.0097 -0.0166 weighted_average_abs_fragment_ppm 0.1825 0.1634 0.1552 peptide_length 0.0000 0.0000 0.0000 ntt -0.1301 -0.1662 -0.1638 nmc 0.0000 0.0000 0.0000 charge_1 0.0038 -0.0023 0.0048 charge_2 -0.0041 0.0038 0.0018 charge_3 -0.0027 -0.0122 -0.0266 charge_4 0.0168 0.0317 0.0074 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0231 -0.0239 -0.0337 15.9949M 0.5349 0.5462 0.5324 unweighted_spectral_entropy -0.5733 -0.5717 -0.5399 delta_RT_loess 2.2232 2.6416 2.5940 m0 Found 55454 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 59106 target PSMs and 3988 decoy PSMs. Calculating q values. Final list yields 55459 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.33 cpu seconds or 15 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-38_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-38_percolator_decoy_psms.tsv S22049-Arjun-38_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-38_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-38_percolator_decoy_psms.tsv S22049-Arjun-38_edited.pin Started Wed Mar 8 10:45:27 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-38_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 76929 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 71373 positives and 5556 negatives, size ratio=12.8461 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 42918 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 43273 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 43134 training set positives with q<0.01 in that direction. Found 64645 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.249 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 66045 PSMs with q<0.01 Iteration 2: Estimated 66296 PSMs with q<0.01 Iteration 3: Estimated 66403 PSMs with q<0.01 Iteration 4: Estimated 66430 PSMs with q<0.01 Iteration 5: Estimated 66428 PSMs with q<0.01 Iteration 6: Estimated 66435 PSMs with q<0.01 Iteration 7: Estimated 66443 PSMs with q<0.01 Iteration 8: Estimated 66443 PSMs with q<0.01 Iteration 9: Estimated 66444 PSMs with q<0.01 Iteration 10: Estimated 66444 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0145 0.0460 0.0884 retentiontime 0.0000 0.0000 0.0000 rank -0.1569 -0.2204 -0.2319 abs_ppm -0.1414 -0.1579 -0.1270 isotope_errors -0.6392 -0.8253 -0.5782 log10_evalue 0.6403 0.4860 0.2744 hyperscore 0.4449 0.4765 0.4207 delta_hyperscore 0.8309 0.8624 1.0336 matched_ion_num -0.9329 -0.9408 -0.9212 complementary_ions 0.0641 -0.1082 -0.1231 ion_series 0.0198 0.0166 0.0065 weighted_average_abs_fragment_ppm 0.2033 0.1142 0.0856 peptide_length 0.0000 0.0000 0.0000 ntt -0.1621 -0.1624 -0.1318 nmc 0.0000 0.0000 0.0000 charge_1 0.0320 0.0345 0.0064 charge_2 -0.0406 -0.0421 -0.0135 charge_3 0.0045 -0.0072 -0.0080 charge_4 0.0992 0.1349 0.1373 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0721 -0.0764 -0.0648 15.9949M 0.5566 0.5769 0.5807 unweighted_spectral_entropy -0.5465 -0.5244 -0.5757 delta_RT_loess 2.0496 2.6811 2.3537 m0 Found 66416 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 71373 target PSMs and 5556 decoy PSMs. Calculating q values. Final list yields 66418 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.5 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-88_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-88_percolator_decoy_psms.tsv S22049-Arjun-88_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-88_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-88_percolator_decoy_psms.tsv S22049-Arjun-88_edited.pin Started Wed Mar 8 10:45:45 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-88_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 65670 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 61644 positives and 4026 negatives, size ratio=15.3115 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 37901 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 37871 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 38004 training set positives with q<0.01 in that direction. Found 56889 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.152 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 57666 PSMs with q<0.01 Iteration 2: Estimated 57861 PSMs with q<0.01 Iteration 3: Estimated 57913 PSMs with q<0.01 Iteration 4: Estimated 57936 PSMs with q<0.01 Iteration 5: Estimated 57947 PSMs with q<0.01 Iteration 6: Estimated 57950 PSMs with q<0.01 Iteration 7: Estimated 57956 PSMs with q<0.01 Iteration 8: Estimated 57958 PSMs with q<0.01 Iteration 9: Estimated 57962 PSMs with q<0.01 Iteration 10: Estimated 57963 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0337 0.0116 -0.0094 retentiontime 0.0000 0.0000 0.0000 rank -0.2145 -0.2059 -0.2238 abs_ppm -0.0859 -0.0890 -0.1139 isotope_errors -0.6248 -0.6267 -0.7758 log10_evalue 0.5156 0.8590 0.0805 hyperscore 0.4882 0.5137 0.4256 delta_hyperscore 1.1115 0.5208 0.9551 matched_ion_num -1.0440 -0.9345 -0.8284 complementary_ions -0.1159 0.0196 0.0306 ion_series -0.0185 -0.0248 -0.0482 weighted_average_abs_fragment_ppm 0.2579 0.2167 0.1904 peptide_length 0.0000 0.0000 0.0000 ntt -0.1418 -0.1088 -0.1327 nmc 0.0000 0.0000 0.0000 charge_1 0.0511 0.0394 0.0260 charge_2 -0.0786 -0.0393 -0.0259 charge_3 0.0875 -0.0041 -0.0010 charge_4 0.0099 0.0038 -0.0056 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0385 -0.0383 -0.0280 15.9949M 0.5357 0.5343 0.5114 unweighted_spectral_entropy -0.5445 -0.5547 -0.5626 delta_RT_loess 2.7442 2.6709 2.5417 m0 Found 57962 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 61644 target PSMs and 4026 decoy PSMs. Calculating q values. Final list yields 57962 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 19.52 cpu seconds or 19 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-142_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-142_percolator_decoy_psms.tsv S22049-Arjun-142_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-142_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-142_percolator_decoy_psms.tsv S22049-Arjun-142_edited.pin Started Wed Mar 8 10:46:07 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-142_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 58826 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 54705 positives and 4121 negatives, size ratio=13.2747 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 33119 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 33111 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 33234 training set positives with q<0.01 in that direction. Found 49757 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.959 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 50602 PSMs with q<0.01 Iteration 2: Estimated 50777 PSMs with q<0.01 Iteration 3: Estimated 50875 PSMs with q<0.01 Iteration 4: Estimated 50911 PSMs with q<0.01 Iteration 5: Estimated 50918 PSMs with q<0.01 Iteration 6: Estimated 50914 PSMs with q<0.01 Iteration 7: Estimated 50916 PSMs with q<0.01 Iteration 8: Estimated 50913 PSMs with q<0.01 Iteration 9: Estimated 50916 PSMs with q<0.01 Iteration 10: Estimated 50914 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0412 0.0484 -0.0061 retentiontime 0.0000 0.0000 0.0000 rank -0.2177 -0.2394 -0.2046 abs_ppm -0.1153 -0.1647 -0.1359 isotope_errors -0.7291 -0.7489 -0.7128 log10_evalue 0.5482 0.4956 0.6273 hyperscore 0.4411 0.2916 0.4411 delta_hyperscore 0.5599 0.7825 0.6729 matched_ion_num -0.7451 -0.8218 -0.7719 complementary_ions -0.1263 -0.0680 -0.2483 ion_series -0.0550 -0.0143 -0.0396 weighted_average_abs_fragment_ppm 0.2284 0.1446 0.1248 peptide_length 0.0000 0.0000 0.0000 ntt -0.1921 -0.1546 -0.1514 nmc 0.0000 0.0000 0.0000 charge_1 0.0284 0.0382 0.0339 charge_2 -0.0455 -0.0374 -0.0359 charge_3 0.0658 -0.0085 -0.0002 charge_4 -0.0142 0.0144 0.0305 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0344 -0.0048 -0.0299 15.9949M 0.5204 0.5089 0.5281 unweighted_spectral_entropy -0.5386 -0.4906 -0.5691 delta_RT_loess 2.3055 2.1008 2.3514 m0 Found 50901 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 54705 target PSMs and 4121 decoy PSMs. Calculating q values. Final list yields 50909 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 12.93 cpu seconds or 13 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-80_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-80_percolator_decoy_psms.tsv S22049-Arjun-80_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-80_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-80_percolator_decoy_psms.tsv S22049-Arjun-80_edited.pin Started Wed Mar 8 10:46:22 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-80_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 54010 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 50670 positives and 3340 negatives, size ratio=15.1707 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 31194 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 31125 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 31256 training set positives with q<0.01 in that direction. Found 46779 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.93 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 47453 PSMs with q<0.01 Iteration 2: Estimated 47569 PSMs with q<0.01 Iteration 3: Estimated 47624 PSMs with q<0.01 Iteration 4: Estimated 47651 PSMs with q<0.01 Iteration 5: Estimated 47651 PSMs with q<0.01 Iteration 6: Estimated 47653 PSMs with q<0.01 Iteration 7: Estimated 47653 PSMs with q<0.01 Iteration 8: Estimated 47651 PSMs with q<0.01 Iteration 9: Estimated 47655 PSMs with q<0.01 Iteration 10: Estimated 47655 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0328 -0.0339 -0.0211 retentiontime 0.0000 0.0000 0.0000 rank -0.2065 -0.2243 -0.1959 abs_ppm -0.0903 -0.0988 -0.0820 isotope_errors -0.3060 -0.2182 -0.2002 log10_evalue 0.9184 1.1197 0.9494 hyperscore 0.4944 0.6305 0.5184 delta_hyperscore 0.5117 0.3628 0.4029 matched_ion_num -0.8297 -0.8230 -0.7815 complementary_ions -0.0324 -0.0165 -0.0322 ion_series 0.0032 0.0009 0.0029 weighted_average_abs_fragment_ppm 0.1703 0.2528 0.1932 peptide_length 0.0000 0.0000 0.0000 ntt -0.1422 -0.1387 -0.1457 nmc 0.0000 0.0000 0.0000 charge_1 0.0255 0.0512 0.0372 charge_2 -0.0241 -0.0449 -0.0361 charge_3 -0.0181 -0.0267 -0.0079 charge_4 0.0569 0.0013 0.0054 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0180 -0.0002 -0.0051 15.9949M 0.5315 0.5650 0.5295 unweighted_spectral_entropy -0.5273 -0.5283 -0.4821 delta_RT_loess 2.2876 2.5201 2.1852 m0 Found 47661 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 50670 target PSMs and 3340 decoy PSMs. Calculating q values. Final list yields 47665 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 10.7 cpu seconds or 11 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-105_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-105_percolator_decoy_psms.tsv S22049-Arjun-105_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-105_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-105_percolator_decoy_psms.tsv S22049-Arjun-105_edited.pin Started Wed Mar 8 10:46:35 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-105_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 64765 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 59983 positives and 4782 negatives, size ratio=12.5435 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36174 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36373 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36234 training set positives with q<0.01 in that direction. Found 54381 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.389 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55300 PSMs with q<0.01 Iteration 2: Estimated 55402 PSMs with q<0.01 Iteration 3: Estimated 55486 PSMs with q<0.01 Iteration 4: Estimated 55517 PSMs with q<0.01 Iteration 5: Estimated 55528 PSMs with q<0.01 Iteration 6: Estimated 55534 PSMs with q<0.01 Iteration 7: Estimated 55534 PSMs with q<0.01 Iteration 8: Estimated 55535 PSMs with q<0.01 Iteration 9: Estimated 55534 PSMs with q<0.01 Iteration 10: Estimated 55533 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0707 0.1184 0.1053 retentiontime 0.0000 0.0000 0.0000 rank -0.1820 -0.2180 -0.2001 abs_ppm -0.0651 -0.1124 -0.0942 isotope_errors -0.8000 -0.5508 -0.9822 log10_evalue 0.5564 0.5995 0.0447 hyperscore 0.4168 0.4273 0.5991 delta_hyperscore 1.1361 0.8168 1.2470 matched_ion_num -0.7767 -0.7595 -0.7830 complementary_ions -0.1398 -0.1219 0.0715 ion_series 0.0132 0.0082 0.0268 weighted_average_abs_fragment_ppm 0.2388 0.1573 0.2250 peptide_length 0.0000 0.0000 0.0000 ntt -0.1642 -0.1575 -0.1157 nmc 0.0000 0.0000 0.0000 charge_1 0.0307 0.0294 0.0513 charge_2 -0.0023 -0.0114 -0.0213 charge_3 -0.0748 -0.0698 -0.0851 charge_4 -0.0001 0.0575 0.0093 charge_5 -0.0202 -0.0162 -0.0137 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0042 0.0238 -0.0017 15.9949M 0.6582 0.6332 0.6466 unweighted_spectral_entropy -0.5194 -0.5140 -0.5136 delta_RT_loess 2.6020 2.4834 2.5238 m0 Found 55503 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 59983 target PSMs and 4782 decoy PSMs. Calculating q values. Final list yields 55505 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 17.28 cpu seconds or 17 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-1_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-1_percolator_decoy_psms.tsv S22049-Arjun-1_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-1_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-1_percolator_decoy_psms.tsv S22049-Arjun-1_edited.pin Started Wed Mar 8 10:46:55 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-1_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 60802 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 56501 positives and 4301 negatives, size ratio=13.1367 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 34026 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 34111 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 33876 training set positives with q<0.01 in that direction. Found 50939 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.976 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 52196 PSMs with q<0.01 Iteration 2: Estimated 52437 PSMs with q<0.01 Iteration 3: Estimated 52541 PSMs with q<0.01 Iteration 4: Estimated 52563 PSMs with q<0.01 Iteration 5: Estimated 52566 PSMs with q<0.01 Iteration 6: Estimated 52572 PSMs with q<0.01 Iteration 7: Estimated 52565 PSMs with q<0.01 Iteration 8: Estimated 52568 PSMs with q<0.01 Iteration 9: Estimated 52570 PSMs with q<0.01 Iteration 10: Estimated 52566 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0308 0.0111 0.1121 retentiontime 0.0000 0.0000 0.0000 rank -0.1763 -0.2399 -0.2052 abs_ppm -0.0841 -0.0967 -0.1220 isotope_errors -0.6651 -0.5494 -0.6213 log10_evalue 0.2920 0.4732 0.5016 hyperscore 0.4564 0.5017 0.6328 delta_hyperscore 0.5599 1.1146 0.7852 matched_ion_num -0.5769 -0.8438 -0.6985 complementary_ions -0.0004 -0.1490 -0.0235 ion_series -0.0356 -0.0220 0.0154 weighted_average_abs_fragment_ppm 0.1735 0.2556 0.0841 peptide_length 0.0000 0.0000 0.0000 ntt -0.1497 -0.1544 -0.1659 nmc 0.0000 0.0000 0.0000 charge_1 -0.0012 0.0360 -0.0195 charge_2 0.0091 -0.0403 0.0239 charge_3 -0.0471 0.0257 -0.0240 charge_4 -0.0093 -0.0110 -0.0133 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0522 -0.0678 -0.0745 15.9949M 0.5209 0.5114 0.4885 unweighted_spectral_entropy -0.6678 -0.6375 -0.5339 delta_RT_loess 2.2258 2.5670 2.3067 m0 Found 52543 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 56501 target PSMs and 4301 decoy PSMs. Calculating q values. Final list yields 52544 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 29.46 cpu seconds or 29 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-22_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-22_percolator_decoy_psms.tsv S22049-Arjun-22_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-22_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-22_percolator_decoy_psms.tsv S22049-Arjun-22_edited.pin Started Wed Mar 8 10:47:26 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-22_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 64267 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 59986 positives and 4281 negatives, size ratio=14.0121 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36450 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36429 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36408 training set positives with q<0.01 in that direction. Found 54646 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.07 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55833 PSMs with q<0.01 Iteration 2: Estimated 56051 PSMs with q<0.01 Iteration 3: Estimated 56139 PSMs with q<0.01 Iteration 4: Estimated 56148 PSMs with q<0.01 Iteration 5: Estimated 56154 PSMs with q<0.01 Iteration 6: Estimated 56157 PSMs with q<0.01 Iteration 7: Estimated 56155 PSMs with q<0.01 Iteration 8: Estimated 56155 PSMs with q<0.01 Iteration 9: Estimated 56162 PSMs with q<0.01 Iteration 10: Estimated 56159 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0720 0.0772 0.1265 retentiontime 0.0000 0.0000 0.0000 rank -0.2247 -0.2432 -0.2399 abs_ppm -0.0871 -0.0594 -0.0962 isotope_errors -0.8427 -0.9356 -0.8282 log10_evalue 0.6205 0.4375 0.4505 hyperscore 0.3278 0.3871 0.5973 delta_hyperscore 0.2616 0.5514 0.7650 matched_ion_num -0.5597 -0.5846 -0.4576 complementary_ions -0.1033 -0.1259 -0.1857 ion_series -0.0272 -0.0380 -0.0321 weighted_average_abs_fragment_ppm 0.2026 0.1296 0.0635 peptide_length 0.0000 0.0000 0.0000 ntt -0.1342 -0.1343 -0.1731 nmc 0.0000 0.0000 0.0000 charge_1 0.0009 0.0052 -0.0176 charge_2 0.0034 -0.0106 0.0147 charge_3 -0.0248 0.0305 0.0145 charge_4 0.0126 -0.0148 0.0160 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0468 -0.0373 -0.0342 15.9949M 0.4925 0.4538 0.4489 unweighted_spectral_entropy -0.6440 -0.5072 -0.4509 delta_RT_loess 2.3288 2.4937 2.5370 m0 Found 56147 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 59986 target PSMs and 4281 decoy PSMs. Calculating q values. Final list yields 56151 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 17.18 cpu seconds or 17 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-89_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-89_percolator_decoy_psms.tsv S22049-Arjun-89_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-89_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-89_percolator_decoy_psms.tsv S22049-Arjun-89_edited.pin Started Wed Mar 8 10:47:45 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-89_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 70171 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 65637 positives and 4534 negatives, size ratio=14.4766 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 40167 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 40206 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 40158 training set positives with q<0.01 in that direction. Found 60264 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.122 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 61211 PSMs with q<0.01 Iteration 2: Estimated 61411 PSMs with q<0.01 Iteration 3: Estimated 61504 PSMs with q<0.01 Iteration 4: Estimated 61540 PSMs with q<0.01 Iteration 5: Estimated 61555 PSMs with q<0.01 Iteration 6: Estimated 61561 PSMs with q<0.01 Iteration 7: Estimated 61564 PSMs with q<0.01 Iteration 8: Estimated 61562 PSMs with q<0.01 Iteration 9: Estimated 61561 PSMs with q<0.01 Iteration 10: Estimated 61560 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0489 0.0093 0.0051 retentiontime 0.0000 0.0000 0.0000 rank -0.2295 -0.2006 -0.2480 abs_ppm -0.0885 -0.1069 -0.0890 isotope_errors -0.5354 -0.6030 -0.4451 log10_evalue 0.2159 0.3692 0.8872 hyperscore 0.5756 0.5660 0.6822 delta_hyperscore 1.1169 0.8631 0.2943 matched_ion_num -0.8282 -0.8532 -0.5870 complementary_ions -0.0732 -0.0820 -0.0363 ion_series -0.0354 -0.0371 -0.0420 weighted_average_abs_fragment_ppm 0.2710 0.2022 0.2134 peptide_length 0.0000 0.0000 0.0000 ntt -0.1538 -0.1919 -0.1665 nmc 0.0000 0.0000 0.0000 charge_1 0.0395 0.0535 0.0250 charge_2 -0.0170 -0.0529 -0.0158 charge_3 -0.0651 -0.0049 -0.0440 charge_4 0.0031 -0.0026 0.0494 charge_5 -0.0130 -0.0031 0.0005 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0576 -0.0470 -0.0870 15.9949M 0.5359 0.5166 0.5299 unweighted_spectral_entropy -0.5646 -0.5407 -0.4987 delta_RT_loess 2.5638 2.4911 2.3121 m0 Found 61535 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 65637 target PSMs and 4534 decoy PSMs. Calculating q values. Final list yields 61539 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 28.69 cpu seconds or 29 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-37_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-37_percolator_decoy_psms.tsv S22049-Arjun-37_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-37_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-37_percolator_decoy_psms.tsv S22049-Arjun-37_edited.pin Started Wed Mar 8 10:48:16 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-37_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 81149 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 75231 positives and 5918 negatives, size ratio=12.7122 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 45339 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 45418 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 45558 training set positives with q<0.01 in that direction. Found 68136 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.315 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 69706 PSMs with q<0.01 Iteration 2: Estimated 69972 PSMs with q<0.01 Iteration 3: Estimated 70006 PSMs with q<0.01 Iteration 4: Estimated 70019 PSMs with q<0.01 Iteration 5: Estimated 70007 PSMs with q<0.01 Iteration 6: Estimated 70013 PSMs with q<0.01 Iteration 7: Estimated 70014 PSMs with q<0.01 Iteration 8: Estimated 70014 PSMs with q<0.01 Iteration 9: Estimated 70014 PSMs with q<0.01 Iteration 10: Estimated 70014 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0521 0.0820 0.0819 retentiontime 0.0000 0.0000 0.0000 rank -0.2623 -0.2575 -0.2635 abs_ppm -0.1236 -0.1406 -0.1167 isotope_errors -0.4590 -0.8362 -0.6970 log10_evalue 0.5531 0.4048 0.1724 hyperscore 0.5604 0.4623 0.4367 delta_hyperscore 1.1056 0.5509 0.9960 matched_ion_num -1.0697 -0.7632 -0.8557 complementary_ions 0.1153 -0.0441 -0.1517 ion_series -0.0639 -0.0318 -0.0557 weighted_average_abs_fragment_ppm 0.1698 0.1066 0.0849 peptide_length 0.0000 0.0000 0.0000 ntt -0.1578 -0.1569 -0.1715 nmc 0.0000 0.0000 0.0000 charge_1 0.0119 0.0163 0.0256 charge_2 -0.0062 0.0071 -0.0078 charge_3 -0.0150 -0.0673 -0.0534 charge_4 -0.0110 -0.0198 -0.0106 charge_5 -0.0077 -0.0085 -0.0081 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0324 -0.0668 -0.0486 15.9949M 0.5174 0.5478 0.5536 unweighted_spectral_entropy -0.4794 -0.6205 -0.6228 delta_RT_loess 2.1841 2.4348 2.2968 m0 Found 69986 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 75231 target PSMs and 5918 decoy PSMs. Calculating q values. Final list yields 69987 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 21.48 cpu seconds or 21 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-134_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-134_percolator_decoy_psms.tsv S22049-Arjun-134_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-134_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-134_percolator_decoy_psms.tsv S22049-Arjun-134_edited.pin Started Wed Mar 8 10:48:40 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-134_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 7203 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 6485 positives and 718 negatives, size ratio=9.03203 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 3591 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 3705 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 3659 training set positives with q<0.01 in that direction. Found 5465 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.14 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 5797 PSMs with q<0.01 Iteration 2: Estimated 5825 PSMs with q<0.01 Iteration 3: Estimated 5829 PSMs with q<0.01 Iteration 4: Estimated 5832 PSMs with q<0.01 Iteration 5: Estimated 5838 PSMs with q<0.01 Iteration 6: Estimated 5838 PSMs with q<0.01 Iteration 7: Estimated 5838 PSMs with q<0.01 Iteration 8: Estimated 5838 PSMs with q<0.01 Iteration 9: Estimated 5838 PSMs with q<0.01 Iteration 10: Estimated 5838 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.4788 0.4102 0.3168 retentiontime 0.0000 0.0000 0.0000 rank -0.0501 -0.1220 -0.0099 abs_ppm -0.3736 -0.2742 -0.3279 isotope_errors -0.7463 -0.6618 -0.6744 log10_evalue -0.2074 0.0337 0.1224 hyperscore 0.3070 0.1840 0.4915 delta_hyperscore 1.5409 0.7471 0.9163 matched_ion_num -1.1667 -0.8837 -0.9090 complementary_ions -0.0507 0.2322 0.1155 ion_series -0.0986 -0.0452 -0.0066 weighted_average_abs_fragment_ppm 0.6216 0.3862 0.7098 peptide_length 0.0000 0.0000 0.0000 ntt 0.0206 -0.0083 0.0187 nmc 0.0000 0.0000 0.0000 charge_1 0.0965 0.0724 0.1026 charge_2 -0.0671 -0.0485 -0.0728 charge_3 -0.1123 -0.0903 -0.1142 charge_4 -0.0245 -0.0197 -0.0249 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0133 -0.0158 -0.0870 15.9949M 1.6729 1.2613 1.6602 unweighted_spectral_entropy -0.2983 -0.2096 -0.1678 delta_RT_loess 2.0770 1.6704 2.1121 m0 Found 5831 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 6485 target PSMs and 718 decoy PSMs. Calculating q values. Final list yields 5831 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 3.503 cpu seconds or 3 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-74_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-74_percolator_decoy_psms.tsv S22049-Arjun-74_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-74_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-74_percolator_decoy_psms.tsv S22049-Arjun-74_edited.pin Started Wed Mar 8 10:48:44 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-74_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 58351 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 54994 positives and 3357 negatives, size ratio=16.3819 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 34094 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 34182 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 34107 training set positives with q<0.01 in that direction. Found 51183 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.189 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 51824 PSMs with q<0.01 Iteration 2: Estimated 51954 PSMs with q<0.01 Iteration 3: Estimated 51990 PSMs with q<0.01 Iteration 4: Estimated 51990 PSMs with q<0.01 Iteration 5: Estimated 51999 PSMs with q<0.01 Iteration 6: Estimated 51996 PSMs with q<0.01 Iteration 7: Estimated 51998 PSMs with q<0.01 Iteration 8: Estimated 51998 PSMs with q<0.01 Iteration 9: Estimated 51999 PSMs with q<0.01 Iteration 10: Estimated 52000 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0571 0.1076 0.0005 retentiontime 0.0000 0.0000 0.0000 rank -0.1647 -0.1803 -0.1726 abs_ppm -0.1120 -0.0886 -0.0904 isotope_errors -0.5844 -0.4534 -0.5537 log10_evalue 0.5916 0.6662 0.6923 hyperscore 0.6019 0.5573 0.7357 delta_hyperscore 0.7569 0.1758 0.6307 matched_ion_num -0.9079 -0.5028 -0.8504 complementary_ions -0.0085 0.1306 0.1590 ion_series 0.0106 0.0341 0.0755 weighted_average_abs_fragment_ppm 0.0533 0.0536 0.1803 peptide_length 0.0000 0.0000 0.0000 ntt -0.1268 -0.1369 -0.1679 nmc 0.0000 0.0000 0.0000 charge_1 -0.0007 -0.0021 0.0361 charge_2 0.0083 -0.0088 -0.0360 charge_3 -0.0195 0.0183 0.0015 charge_4 -0.0188 0.0636 -0.0173 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0147 -0.0368 -0.0574 15.9949M 0.5757 0.4835 0.5365 unweighted_spectral_entropy -0.4120 -0.5286 -0.4808 delta_RT_loess 2.3810 2.3362 2.9363 m0 Found 51977 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 54994 target PSMs and 3357 decoy PSMs. Calculating q values. Final list yields 51978 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.88 cpu seconds or 13 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-48_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-48_percolator_decoy_psms.tsv S22049-Arjun-48_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-48_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-48_percolator_decoy_psms.tsv S22049-Arjun-48_edited.pin Started Wed Mar 8 10:49:00 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-48_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 70450 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 65638 positives and 4812 negatives, size ratio=13.6405 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 39682 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 39718 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 39942 training set positives with q<0.01 in that direction. Found 59700 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.137 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 60939 PSMs with q<0.01 Iteration 2: Estimated 61237 PSMs with q<0.01 Iteration 3: Estimated 61353 PSMs with q<0.01 Iteration 4: Estimated 61394 PSMs with q<0.01 Iteration 5: Estimated 61399 PSMs with q<0.01 Iteration 6: Estimated 61399 PSMs with q<0.01 Iteration 7: Estimated 61400 PSMs with q<0.01 Iteration 8: Estimated 61399 PSMs with q<0.01 Iteration 9: Estimated 61398 PSMs with q<0.01 Iteration 10: Estimated 61398 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0502 0.0287 0.0245 retentiontime 0.0000 0.0000 0.0000 rank -0.2345 -0.2089 -0.2357 abs_ppm -0.1317 -0.1542 -0.1798 isotope_errors -0.4907 -0.6795 -0.7298 log10_evalue 0.5036 0.9852 0.5454 hyperscore 0.5561 0.5370 0.4964 delta_hyperscore 0.7467 0.3936 0.5650 matched_ion_num -0.7542 -0.8315 -0.6632 complementary_ions -0.0582 -0.0641 -0.0894 ion_series -0.0455 -0.0218 -0.0206 weighted_average_abs_fragment_ppm 0.1541 0.1117 0.1283 peptide_length 0.0000 0.0000 0.0000 ntt -0.1973 -0.1714 -0.1846 nmc 0.0000 0.0000 0.0000 charge_1 0.0202 0.0077 -0.0029 charge_2 -0.0218 -0.0231 0.0026 charge_3 -0.0123 0.0485 -0.0010 charge_4 0.0855 0.0497 0.0119 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0307 0.0036 -0.0318 15.9949M 0.4930 0.5060 0.5013 unweighted_spectral_entropy -0.5697 -0.5514 -0.5914 delta_RT_loess 2.3906 2.2663 2.4988 m0 Found 61381 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 65638 target PSMs and 4812 decoy PSMs. Calculating q values. Final list yields 61381 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 22.82 cpu seconds or 23 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-121_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-121_percolator_decoy_psms.tsv S22049-Arjun-121_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-121_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-121_percolator_decoy_psms.tsv S22049-Arjun-121_edited.pin Started Wed Mar 8 10:49:25 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-121_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 57615 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 54150 positives and 3465 negatives, size ratio=15.6277 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 33133 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 33187 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 33202 training set positives with q<0.01 in that direction. Found 49772 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.035 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 50627 PSMs with q<0.01 Iteration 2: Estimated 50874 PSMs with q<0.01 Iteration 3: Estimated 50909 PSMs with q<0.01 Iteration 4: Estimated 50919 PSMs with q<0.01 Iteration 5: Estimated 50926 PSMs with q<0.01 Iteration 6: Estimated 50928 PSMs with q<0.01 Iteration 7: Estimated 50928 PSMs with q<0.01 Iteration 8: Estimated 50931 PSMs with q<0.01 Iteration 9: Estimated 50931 PSMs with q<0.01 Iteration 10: Estimated 50931 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0043 0.0217 -0.0002 retentiontime 0.0000 0.0000 0.0000 rank -0.2435 -0.2314 -0.2264 abs_ppm -0.0411 -0.0604 -0.0552 isotope_errors -0.5036 -0.6863 -0.5628 log10_evalue 1.5088 0.7241 1.7566 hyperscore 0.4383 0.5083 0.3040 delta_hyperscore 0.1165 0.6438 -0.4180 matched_ion_num -0.5152 -0.6809 -0.7238 complementary_ions -0.0345 -0.0399 0.1594 ion_series 0.0090 -0.0042 0.0499 weighted_average_abs_fragment_ppm 0.1514 0.1081 0.1142 peptide_length 0.0000 0.0000 0.0000 ntt -0.1741 -0.1401 -0.1711 nmc 0.0000 0.0000 0.0000 charge_1 -0.0246 -0.0075 -0.0261 charge_2 0.0231 0.0059 0.0103 charge_3 0.0110 0.0093 0.0756 charge_4 -0.0221 -0.0083 -0.0017 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0550 -0.0894 -0.0437 15.9949M 0.3582 0.4054 0.3953 unweighted_spectral_entropy -0.4958 -0.5082 -0.5156 delta_RT_loess 2.1620 2.6819 1.8433 m0 Found 50936 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 54150 target PSMs and 3465 decoy PSMs. Calculating q values. Final list yields 50937 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 21.54 cpu seconds or 22 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-6_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-6_percolator_decoy_psms.tsv S22049-Arjun-6_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-6_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-6_percolator_decoy_psms.tsv S22049-Arjun-6_edited.pin Started Wed Mar 8 10:49:49 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-6_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 67300 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 63173 positives and 4127 negatives, size ratio=15.3072 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 38818 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 38791 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 38739 training set positives with q<0.01 in that direction. Found 58165 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.438 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 59094 PSMs with q<0.01 Iteration 2: Estimated 59291 PSMs with q<0.01 Iteration 3: Estimated 59393 PSMs with q<0.01 Iteration 4: Estimated 59427 PSMs with q<0.01 Iteration 5: Estimated 59435 PSMs with q<0.01 Iteration 6: Estimated 59443 PSMs with q<0.01 Iteration 7: Estimated 59447 PSMs with q<0.01 Iteration 8: Estimated 59448 PSMs with q<0.01 Iteration 9: Estimated 59451 PSMs with q<0.01 Iteration 10: Estimated 59450 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0408 0.0442 0.0434 retentiontime 0.0000 0.0000 0.0000 rank -0.2409 -0.2272 -0.1945 abs_ppm -0.1224 -0.1386 -0.1116 isotope_errors -0.5497 -0.5900 -0.6854 log10_evalue 0.6980 0.9904 0.8257 hyperscore 0.4544 0.4713 0.5140 delta_hyperscore 0.2484 -0.0233 0.0783 matched_ion_num -0.4805 -0.5262 -0.5317 complementary_ions -0.0760 -0.1571 -0.0668 ion_series -0.0463 -0.0483 -0.0696 weighted_average_abs_fragment_ppm 0.2786 0.2410 0.2756 peptide_length 0.0000 0.0000 0.0000 ntt -0.1511 -0.1461 -0.1081 nmc 0.0000 0.0000 0.0000 charge_1 0.0438 0.0338 0.0626 charge_2 -0.0501 -0.0334 -0.0601 charge_3 0.0519 -0.0049 -0.0217 charge_4 -0.0035 -0.0028 -0.0136 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0373 -0.0747 -0.0375 15.9949M 0.4900 0.5233 0.5668 unweighted_spectral_entropy -0.5079 -0.4831 -0.4660 delta_RT_loess 2.3300 2.3273 2.4841 m0 Found 59449 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 63173 target PSMs and 4127 decoy PSMs. Calculating q values. Final list yields 59450 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.01 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-140_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-140_percolator_decoy_psms.tsv S22049-Arjun-140_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-140_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-140_percolator_decoy_psms.tsv S22049-Arjun-140_edited.pin Started Wed Mar 8 10:50:07 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-140_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 61535 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 57427 positives and 4108 negatives, size ratio=13.9793 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 34843 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 34877 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 34782 training set positives with q<0.01 in that direction. Found 52252 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.164 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 53320 PSMs with q<0.01 Iteration 2: Estimated 53517 PSMs with q<0.01 Iteration 3: Estimated 53572 PSMs with q<0.01 Iteration 4: Estimated 53585 PSMs with q<0.01 Iteration 5: Estimated 53585 PSMs with q<0.01 Iteration 6: Estimated 53580 PSMs with q<0.01 Iteration 7: Estimated 53585 PSMs with q<0.01 Iteration 8: Estimated 53581 PSMs with q<0.01 Iteration 9: Estimated 53584 PSMs with q<0.01 Iteration 10: Estimated 53581 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0256 0.0187 -0.0922 retentiontime 0.0000 0.0000 0.0000 rank -0.1935 -0.1940 -0.1965 abs_ppm -0.0842 -0.1141 -0.0774 isotope_errors -0.7002 -0.6371 -0.9622 log10_evalue 0.7296 0.5669 0.9938 hyperscore 0.5509 0.4402 0.5362 delta_hyperscore 0.4505 0.3388 -0.0818 matched_ion_num -0.7709 -0.7016 -0.6656 complementary_ions 0.0288 -0.0030 0.1373 ion_series 0.0324 0.0157 0.0126 weighted_average_abs_fragment_ppm 0.2294 0.1872 0.3064 peptide_length 0.0000 0.0000 0.0000 ntt -0.1537 -0.1185 -0.2011 nmc 0.0000 0.0000 0.0000 charge_1 0.0277 0.0180 0.0092 charge_2 -0.0269 -0.0113 -0.0014 charge_3 -0.0019 -0.0255 -0.0292 charge_4 -0.0212 -0.0226 -0.0228 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0691 -0.0626 -0.0744 15.9949M 0.5220 0.5631 0.5396 unweighted_spectral_entropy -0.5297 -0.5897 -0.5274 delta_RT_loess 2.3000 2.2655 2.2025 m0 Found 53587 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 57427 target PSMs and 4108 decoy PSMs. Calculating q values. Final list yields 53591 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.49 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-11_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-11_percolator_decoy_psms.tsv S22049-Arjun-11_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-11_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-11_percolator_decoy_psms.tsv S22049-Arjun-11_edited.pin Started Wed Mar 8 10:50:24 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-11_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 77759 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 71845 positives and 5914 negatives, size ratio=12.1483 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 43189 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 43199 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 43086 training set positives with q<0.01 in that direction. Found 64755 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.329 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 66086 PSMs with q<0.01 Iteration 2: Estimated 66253 PSMs with q<0.01 Iteration 3: Estimated 66339 PSMs with q<0.01 Iteration 4: Estimated 66381 PSMs with q<0.01 Iteration 5: Estimated 66399 PSMs with q<0.01 Iteration 6: Estimated 66410 PSMs with q<0.01 Iteration 7: Estimated 66411 PSMs with q<0.01 Iteration 8: Estimated 66420 PSMs with q<0.01 Iteration 9: Estimated 66422 PSMs with q<0.01 Iteration 10: Estimated 66421 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0555 0.0328 0.0854 retentiontime 0.0000 0.0000 0.0000 rank -0.2222 -0.2610 -0.2641 abs_ppm -0.1659 -0.1665 -0.1315 isotope_errors -0.9168 -0.8625 -0.8312 log10_evalue 0.6535 0.6419 0.3378 hyperscore 0.5178 0.6062 0.5151 delta_hyperscore 0.5309 0.9185 0.8931 matched_ion_num -0.9035 -1.1162 -0.9384 complementary_ions -0.1345 -0.2231 -0.1682 ion_series -0.0132 -0.0285 -0.0308 weighted_average_abs_fragment_ppm 0.0851 0.1208 0.0445 peptide_length 0.0000 0.0000 0.0000 ntt -0.1484 -0.1594 -0.1521 nmc 0.0000 0.0000 0.0000 charge_1 0.0125 0.0508 0.0064 charge_2 -0.0047 -0.0376 -0.0238 charge_3 -0.0197 -0.0284 0.0514 charge_4 -0.0041 -0.0279 -0.0152 charge_5 -0.0118 -0.0243 -0.0103 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0323 -0.0231 0.0031 15.9949M 0.6169 0.6154 0.6313 unweighted_spectral_entropy -0.6332 -0.6568 -0.5774 delta_RT_loess 2.5750 2.7846 2.5002 m0 Found 66421 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 71845 target PSMs and 5914 decoy PSMs. Calculating q values. Final list yields 66424 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 17.56 cpu seconds or 18 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-84-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-84-2nd_percolator_decoy_psms.tsv S22049-Arjun-84-2nd_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-84-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-84-2nd_percolator_decoy_psms.tsv S22049-Arjun-84-2nd_edited.pin Started Wed Mar 8 10:50:44 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-84-2nd_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 66478 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 62078 positives and 4400 negatives, size ratio=14.1086 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 37849 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 37828 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 37805 training set positives with q<0.01 in that direction. Found 56733 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.082 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 57706 PSMs with q<0.01 Iteration 2: Estimated 57894 PSMs with q<0.01 Iteration 3: Estimated 57938 PSMs with q<0.01 Iteration 4: Estimated 57941 PSMs with q<0.01 Iteration 5: Estimated 57948 PSMs with q<0.01 Iteration 6: Estimated 57951 PSMs with q<0.01 Iteration 7: Estimated 57952 PSMs with q<0.01 Iteration 8: Estimated 57952 PSMs with q<0.01 Iteration 9: Estimated 57952 PSMs with q<0.01 Iteration 10: Estimated 57953 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0135 0.0235 0.0145 retentiontime 0.0000 0.0000 0.0000 rank -0.2183 -0.2167 -0.2142 abs_ppm -0.1419 -0.1249 -0.1100 isotope_errors -0.3116 -0.5170 -0.4300 log10_evalue 0.7890 0.7201 0.5255 hyperscore 0.5095 0.6067 0.6181 delta_hyperscore 0.6808 0.7432 0.8037 matched_ion_num -0.8752 -0.9677 -0.8072 complementary_ions -0.0423 -0.0193 -0.0910 ion_series -0.0307 -0.0416 -0.0084 weighted_average_abs_fragment_ppm 0.2251 0.2439 0.1726 peptide_length 0.0000 0.0000 0.0000 ntt -0.1552 -0.1440 -0.1645 nmc 0.0000 0.0000 0.0000 charge_1 0.0606 0.0518 0.0337 charge_2 -0.0377 -0.0427 -0.0283 charge_3 -0.0695 -0.0245 -0.0584 charge_4 -0.0206 -0.0265 0.1459 charge_5 -0.0090 -0.0087 -0.0066 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0646 -0.0644 -0.0542 15.9949M 0.4986 0.5969 0.5386 unweighted_spectral_entropy -0.5828 -0.5806 -0.5766 delta_RT_loess 2.3118 2.6815 2.4490 m0 Found 57959 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 62078 target PSMs and 4400 decoy PSMs. Calculating q values. Final list yields 57960 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 18.67 cpu seconds or 19 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-132_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-132_percolator_decoy_psms.tsv S22049-Arjun-132_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-132_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-132_percolator_decoy_psms.tsv S22049-Arjun-132_edited.pin Started Wed Mar 8 10:51:05 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-132_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 64325 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 60511 positives and 3814 negatives, size ratio=15.8655 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 37013 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 37170 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 37205 training set positives with q<0.01 in that direction. Found 55672 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.201 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 56774 PSMs with q<0.01 Iteration 2: Estimated 57029 PSMs with q<0.01 Iteration 3: Estimated 57075 PSMs with q<0.01 Iteration 4: Estimated 57094 PSMs with q<0.01 Iteration 5: Estimated 57090 PSMs with q<0.01 Iteration 6: Estimated 57092 PSMs with q<0.01 Iteration 7: Estimated 57090 PSMs with q<0.01 Iteration 8: Estimated 57091 PSMs with q<0.01 Iteration 9: Estimated 57091 PSMs with q<0.01 Iteration 10: Estimated 57091 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0524 0.0098 0.0507 retentiontime 0.0000 0.0000 0.0000 rank -0.2405 -0.1871 -0.2048 abs_ppm -0.1255 -0.0985 -0.1589 isotope_errors -0.4150 -0.5768 -0.5360 log10_evalue 0.9372 0.7505 0.4156 hyperscore 0.4399 0.5893 0.5106 delta_hyperscore 0.4681 0.2017 0.6654 matched_ion_num -0.8080 -0.5518 -0.5857 complementary_ions -0.0201 0.1114 0.0496 ion_series -0.0046 0.0016 0.0034 weighted_average_abs_fragment_ppm 0.1286 0.1227 0.1388 peptide_length 0.0000 0.0000 0.0000 ntt -0.0938 -0.1327 -0.1782 nmc 0.0000 0.0000 0.0000 charge_1 -0.0054 -0.0056 0.0004 charge_2 0.0111 0.0096 0.0063 charge_3 -0.0251 -0.0174 -0.0285 charge_4 0.0220 0.0156 0.0171 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0110 -0.0417 -0.0257 15.9949M 0.4761 0.4632 0.4453 unweighted_spectral_entropy -0.5468 -0.6293 -0.5821 delta_RT_loess 2.4426 2.2405 2.5080 m0 Found 57071 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 60511 target PSMs and 3814 decoy PSMs. Calculating q values. Final list yields 57071 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.01 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-52_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-52_percolator_decoy_psms.tsv S22049-Arjun-52_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-52_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-52_percolator_decoy_psms.tsv S22049-Arjun-52_edited.pin Started Wed Mar 8 10:51:23 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-52_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 72245 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 67606 positives and 4639 negatives, size ratio=14.5734 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 41427 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 41483 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 41565 training set positives with q<0.01 in that direction. Found 62240 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.22 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 63199 PSMs with q<0.01 Iteration 2: Estimated 63384 PSMs with q<0.01 Iteration 3: Estimated 63442 PSMs with q<0.01 Iteration 4: Estimated 63449 PSMs with q<0.01 Iteration 5: Estimated 63457 PSMs with q<0.01 Iteration 6: Estimated 63457 PSMs with q<0.01 Iteration 7: Estimated 63460 PSMs with q<0.01 Iteration 8: Estimated 63456 PSMs with q<0.01 Iteration 9: Estimated 63459 PSMs with q<0.01 Iteration 10: Estimated 63460 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0040 0.0865 0.0796 retentiontime 0.0000 0.0000 0.0000 rank -0.2374 -0.2555 -0.2202 abs_ppm -0.1002 -0.1303 -0.1440 isotope_errors -0.6742 -0.6031 -0.7791 log10_evalue 0.0759 0.3235 0.1895 hyperscore 0.5004 0.5639 0.5705 delta_hyperscore 1.3661 0.7208 1.2744 matched_ion_num -0.8967 -0.6805 -0.8859 complementary_ions -0.2390 -0.1295 -0.2503 ion_series 0.0208 -0.0212 -0.0048 weighted_average_abs_fragment_ppm 0.0992 0.1291 0.0631 peptide_length 0.0000 0.0000 0.0000 ntt -0.1755 -0.1506 -0.1612 nmc 0.0000 0.0000 0.0000 charge_1 -0.0031 0.0066 -0.0130 charge_2 0.0008 -0.0110 0.0044 charge_3 0.0089 0.0033 0.0265 charge_4 -0.0036 0.0388 0.0103 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0207 -0.0164 0.0308 15.9949M 0.5409 0.5704 0.5396 unweighted_spectral_entropy -0.5178 -0.5089 -0.4294 delta_RT_loess 2.5445 2.4233 2.4498 m0 Found 63419 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 67606 target PSMs and 4639 decoy PSMs. Calculating q values. Final list yields 63422 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 17.49 cpu seconds or 17 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-15_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-15_percolator_decoy_psms.tsv S22049-Arjun-15_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-15_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-15_percolator_decoy_psms.tsv S22049-Arjun-15_edited.pin Started Wed Mar 8 10:51:43 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-15_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 73762 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 68268 positives and 5494 negatives, size ratio=12.4259 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 40778 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 41051 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 40860 training set positives with q<0.01 in that direction. Found 61370 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.406 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 62768 PSMs with q<0.01 Iteration 2: Estimated 63076 PSMs with q<0.01 Iteration 3: Estimated 63188 PSMs with q<0.01 Iteration 4: Estimated 63234 PSMs with q<0.01 Iteration 5: Estimated 63247 PSMs with q<0.01 Iteration 6: Estimated 63253 PSMs with q<0.01 Iteration 7: Estimated 63252 PSMs with q<0.01 Iteration 8: Estimated 63254 PSMs with q<0.01 Iteration 9: Estimated 63254 PSMs with q<0.01 Iteration 10: Estimated 63254 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0293 0.0234 0.0486 retentiontime 0.0000 0.0000 0.0000 rank -0.2513 -0.2086 -0.2572 abs_ppm -0.1104 -0.0820 -0.1068 isotope_errors -0.5487 -0.6574 -0.4245 log10_evalue 1.1060 1.3100 1.1124 hyperscore 0.6307 0.7128 0.7517 delta_hyperscore 0.3149 0.1902 0.3681 matched_ion_num -0.6454 -0.6709 -0.6623 complementary_ions -0.2296 -0.1679 -0.2028 ion_series -0.0374 -0.0107 -0.0245 weighted_average_abs_fragment_ppm 0.0831 0.0430 0.1102 peptide_length 0.0000 0.0000 0.0000 ntt -0.1552 -0.1294 -0.1475 nmc 0.0000 0.0000 0.0000 charge_1 0.0159 0.0048 0.0312 charge_2 -0.0026 0.0205 -0.0112 charge_3 -0.0340 -0.0661 -0.0512 charge_4 -0.0239 -0.0358 -0.0375 charge_5 -0.0160 -0.0132 -0.0167 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0221 0.0188 -0.0436 15.9949M 0.5331 0.4730 0.5947 unweighted_spectral_entropy -0.6793 -0.5316 -0.6011 delta_RT_loess 2.5137 2.0659 2.6176 m0 Found 63210 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 68268 target PSMs and 5494 decoy PSMs. Calculating q values. Final list yields 63217 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 22.93 cpu seconds or 23 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-81_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-81_percolator_decoy_psms.tsv S22049-Arjun-81_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-81_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-81_percolator_decoy_psms.tsv S22049-Arjun-81_edited.pin Started Wed Mar 8 10:52:09 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-81_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 62861 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 58933 positives and 3928 negatives, size ratio=15.0033 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 35959 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36071 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36131 training set positives with q<0.01 in that direction. Found 54058 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.123 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 54937 PSMs with q<0.01 Iteration 2: Estimated 55170 PSMs with q<0.01 Iteration 3: Estimated 55258 PSMs with q<0.01 Iteration 4: Estimated 55296 PSMs with q<0.01 Iteration 5: Estimated 55298 PSMs with q<0.01 Iteration 6: Estimated 55304 PSMs with q<0.01 Iteration 7: Estimated 55310 PSMs with q<0.01 Iteration 8: Estimated 55310 PSMs with q<0.01 Iteration 9: Estimated 55310 PSMs with q<0.01 Iteration 10: Estimated 55310 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0527 -0.0186 -0.0540 retentiontime 0.0000 0.0000 0.0000 rank -0.2280 -0.2098 -0.2223 abs_ppm -0.1118 -0.1230 -0.0944 isotope_errors -0.6581 -0.4670 -0.4952 log10_evalue 0.0109 0.4422 0.0501 hyperscore 0.4616 0.4209 0.6167 delta_hyperscore 1.1734 0.7099 1.5527 matched_ion_num -0.7773 -0.6296 -0.9624 complementary_ions -0.1936 -0.1052 -0.1059 ion_series -0.0342 -0.0221 0.0144 weighted_average_abs_fragment_ppm 0.1048 0.2820 0.2300 peptide_length 0.0000 0.0000 0.0000 ntt -0.1494 -0.1611 -0.1282 nmc 0.0000 0.0000 0.0000 charge_1 0.0156 0.0252 0.0207 charge_2 -0.0176 -0.0118 -0.0130 charge_3 0.0080 -0.0546 -0.0321 charge_4 -0.0058 0.0087 0.0085 charge_5 -0.0094 -0.0090 -0.0105 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0063 -0.0130 -0.0335 15.9949M 0.5195 0.4936 0.5148 unweighted_spectral_entropy -0.5784 -0.5512 -0.4649 delta_RT_loess 2.3469 2.2520 2.6353 m0 Found 55309 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 58933 target PSMs and 3928 decoy PSMs. Calculating q values. Final list yields 55309 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 19.85 cpu seconds or 20 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-138_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-138_percolator_decoy_psms.tsv S22049-Arjun-138_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-138_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-138_percolator_decoy_psms.tsv S22049-Arjun-138_edited.pin Started Wed Mar 8 10:52:31 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-138_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 61671 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 57680 positives and 3991 negatives, size ratio=14.4525 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 34998 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 35038 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 35049 training set positives with q<0.01 in that direction. Found 52534 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.008 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 53565 PSMs with q<0.01 Iteration 2: Estimated 53787 PSMs with q<0.01 Iteration 3: Estimated 53899 PSMs with q<0.01 Iteration 4: Estimated 53958 PSMs with q<0.01 Iteration 5: Estimated 53974 PSMs with q<0.01 Iteration 6: Estimated 53976 PSMs with q<0.01 Iteration 7: Estimated 53977 PSMs with q<0.01 Iteration 8: Estimated 53980 PSMs with q<0.01 Iteration 9: Estimated 53982 PSMs with q<0.01 Iteration 10: Estimated 53981 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0234 0.0474 0.0732 retentiontime 0.0000 0.0000 0.0000 rank -0.2207 -0.2103 -0.1866 abs_ppm -0.1093 -0.1046 -0.1066 isotope_errors -0.6787 -0.6385 -0.6599 log10_evalue 0.3460 0.3042 0.2520 hyperscore 0.3156 0.3655 0.4355 delta_hyperscore 0.9420 0.6394 0.9181 matched_ion_num -0.8182 -0.6511 -0.7487 complementary_ions -0.0979 -0.1738 -0.0788 ion_series -0.0002 -0.0392 0.0051 weighted_average_abs_fragment_ppm 0.1593 0.0992 0.0972 peptide_length 0.0000 0.0000 0.0000 ntt -0.1492 -0.1186 -0.0891 nmc 0.0000 0.0000 0.0000 charge_1 0.0319 0.0083 0.0100 charge_2 -0.0336 -0.0081 -0.0155 charge_3 0.0031 -0.0024 0.0230 charge_4 0.0129 0.0062 -0.0027 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0553 -0.0263 -0.0096 15.9949M 0.4726 0.5080 0.4962 unweighted_spectral_entropy -0.5457 -0.5884 -0.6194 delta_RT_loess 2.0275 2.0511 2.0742 m0 Found 53950 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 57680 target PSMs and 3991 decoy PSMs. Calculating q values. Final list yields 53950 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.27 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-125_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-125_percolator_decoy_psms.tsv S22049-Arjun-125_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-125_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-125_percolator_decoy_psms.tsv S22049-Arjun-125_edited.pin Started Wed Mar 8 10:52:47 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-125_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 64244 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 59842 positives and 4402 negatives, size ratio=13.5943 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36167 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36489 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36359 training set positives with q<0.01 in that direction. Found 54430 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.354 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55435 PSMs with q<0.01 Iteration 2: Estimated 55603 PSMs with q<0.01 Iteration 3: Estimated 55702 PSMs with q<0.01 Iteration 4: Estimated 55724 PSMs with q<0.01 Iteration 5: Estimated 55737 PSMs with q<0.01 Iteration 6: Estimated 55744 PSMs with q<0.01 Iteration 7: Estimated 55747 PSMs with q<0.01 Iteration 8: Estimated 55745 PSMs with q<0.01 Iteration 9: Estimated 55744 PSMs with q<0.01 Iteration 10: Estimated 55744 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1143 0.1374 0.0210 retentiontime 0.0000 0.0000 0.0000 rank -0.2356 -0.1942 -0.2074 abs_ppm -0.0833 -0.1156 -0.1169 isotope_errors -0.5938 -0.7368 -0.7146 log10_evalue 1.0325 0.5176 0.8262 hyperscore 0.4984 0.4238 0.4368 delta_hyperscore 0.2800 0.7817 0.5780 matched_ion_num -0.7162 -0.7791 -0.7991 complementary_ions 0.1857 -0.0748 -0.1669 ion_series -0.0342 -0.0415 -0.0270 weighted_average_abs_fragment_ppm 0.1351 0.0952 0.1859 peptide_length 0.0000 0.0000 0.0000 ntt -0.1402 -0.1563 -0.1727 nmc 0.0000 0.0000 0.0000 charge_1 0.0116 0.0195 0.0285 charge_2 -0.0006 -0.0140 -0.0302 charge_3 -0.0508 -0.0257 0.0019 charge_4 0.0284 0.0090 0.0211 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0005 0.0097 0.0077 15.9949M 0.5137 0.5457 0.5655 unweighted_spectral_entropy -0.5979 -0.5235 -0.6046 delta_RT_loess 2.4752 2.5690 2.5938 m0 Found 55716 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 59842 target PSMs and 4402 decoy PSMs. Calculating q values. Final list yields 55722 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.74 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-67_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-67_percolator_decoy_psms.tsv S22049-Arjun-67_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-67_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-67_percolator_decoy_psms.tsv S22049-Arjun-67_edited.pin Started Wed Mar 8 10:53:05 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-67_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 74879 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 69949 positives and 4930 negatives, size ratio=14.1884 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 42664 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 42629 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 42830 training set positives with q<0.01 in that direction. Found 64008 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.305 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 65282 PSMs with q<0.01 Iteration 2: Estimated 65468 PSMs with q<0.01 Iteration 3: Estimated 65550 PSMs with q<0.01 Iteration 4: Estimated 65556 PSMs with q<0.01 Iteration 5: Estimated 65561 PSMs with q<0.01 Iteration 6: Estimated 65560 PSMs with q<0.01 Iteration 7: Estimated 65564 PSMs with q<0.01 Iteration 8: Estimated 65561 PSMs with q<0.01 Iteration 9: Estimated 65564 PSMs with q<0.01 Iteration 10: Estimated 65564 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0016 -0.0155 0.0219 retentiontime 0.0000 0.0000 0.0000 rank -0.2329 -0.2206 -0.2236 abs_ppm -0.1282 -0.1393 -0.1482 isotope_errors -0.8732 -0.8468 -1.0298 log10_evalue 0.1505 0.3085 0.1891 hyperscore 0.5086 0.5260 0.3731 delta_hyperscore 0.9789 0.9533 0.5184 matched_ion_num -1.0304 -1.0301 -0.7548 complementary_ions -0.1708 -0.1638 -0.1367 ion_series -0.0273 -0.0406 -0.0769 weighted_average_abs_fragment_ppm 0.1519 0.1722 0.0849 peptide_length 0.0000 0.0000 0.0000 ntt -0.1585 -0.1893 -0.1829 nmc 0.0000 0.0000 0.0000 charge_1 0.0377 0.0245 -0.0160 charge_2 -0.0351 -0.0203 0.0027 charge_3 -0.0100 -0.0148 0.0453 charge_4 -0.0055 -0.0046 0.0023 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0221 -0.0322 -0.0336 15.9949M 0.5880 0.5389 0.5392 unweighted_spectral_entropy -0.5985 -0.5850 -0.5230 delta_RT_loess 2.4904 2.6086 2.3299 m0 Found 65590 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 69949 target PSMs and 4930 decoy PSMs. Calculating q values. Final list yields 65591 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 17.4 cpu seconds or 17 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-44_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-44_percolator_decoy_psms.tsv S22049-Arjun-44_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-44_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-44_percolator_decoy_psms.tsv S22049-Arjun-44_edited.pin Started Wed Mar 8 10:53:24 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-44_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 67993 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 63778 positives and 4215 negatives, size ratio=15.1312 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 39257 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 39265 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 39219 training set positives with q<0.01 in that direction. Found 58871 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.235 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 59654 PSMs with q<0.01 Iteration 2: Estimated 59901 PSMs with q<0.01 Iteration 3: Estimated 60005 PSMs with q<0.01 Iteration 4: Estimated 60027 PSMs with q<0.01 Iteration 5: Estimated 60028 PSMs with q<0.01 Iteration 6: Estimated 60030 PSMs with q<0.01 Iteration 7: Estimated 60032 PSMs with q<0.01 Iteration 8: Estimated 60036 PSMs with q<0.01 Iteration 9: Estimated 60039 PSMs with q<0.01 Iteration 10: Estimated 60040 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0278 0.0221 0.0379 retentiontime 0.0000 0.0000 0.0000 rank -0.1930 -0.1972 -0.2200 abs_ppm -0.1354 -0.1099 -0.1264 isotope_errors -0.5755 -0.6662 -0.4771 log10_evalue 0.5920 1.0851 0.9062 hyperscore 0.6271 0.5737 0.6720 delta_hyperscore 0.4373 0.2267 0.3813 matched_ion_num -0.6307 -0.7728 -0.8000 complementary_ions -0.1472 -0.2063 -0.1467 ion_series 0.0050 -0.0193 0.0170 weighted_average_abs_fragment_ppm 0.1256 0.1191 0.0951 peptide_length 0.0000 0.0000 0.0000 ntt -0.1302 -0.2478 -0.1689 nmc 0.0000 0.0000 0.0000 charge_1 0.0186 -0.0148 0.0102 charge_2 -0.0217 0.0009 -0.0133 charge_3 0.0128 0.0545 0.0112 charge_4 -0.0065 0.0147 0.0049 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0405 -0.0538 -0.0431 15.9949M 0.5221 0.5609 0.5399 unweighted_spectral_entropy -0.5264 -0.4006 -0.4825 delta_RT_loess 2.3704 1.9770 2.4449 m0 Found 60030 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 63778 target PSMs and 4215 decoy PSMs. Calculating q values. Final list yields 60032 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 20.58 cpu seconds or 20 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-4_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-4_percolator_decoy_psms.tsv S22049-Arjun-4_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-4_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-4_percolator_decoy_psms.tsv S22049-Arjun-4_edited.pin Started Wed Mar 8 10:53:47 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-4_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 71463 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 66190 positives and 5273 negatives, size ratio=12.5526 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 39763 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 39680 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 39848 training set positives with q<0.01 in that direction. Found 59641 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.357 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 60946 PSMs with q<0.01 Iteration 2: Estimated 61105 PSMs with q<0.01 Iteration 3: Estimated 61197 PSMs with q<0.01 Iteration 4: Estimated 61238 PSMs with q<0.01 Iteration 5: Estimated 61254 PSMs with q<0.01 Iteration 6: Estimated 61266 PSMs with q<0.01 Iteration 7: Estimated 61272 PSMs with q<0.01 Iteration 8: Estimated 61271 PSMs with q<0.01 Iteration 9: Estimated 61275 PSMs with q<0.01 Iteration 10: Estimated 61274 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0243 0.0695 -0.0484 retentiontime 0.0000 0.0000 0.0000 rank -0.2541 -0.2394 -0.2313 abs_ppm -0.1484 -0.1297 -0.1183 isotope_errors -0.4621 -0.4929 -0.4290 log10_evalue 0.7151 0.5167 0.3486 hyperscore 0.5796 0.6323 0.7762 delta_hyperscore 0.8426 0.9072 1.1913 matched_ion_num -0.9625 -0.9405 -0.9249 complementary_ions -0.1038 -0.1368 -0.1604 ion_series -0.0043 -0.0496 0.0253 weighted_average_abs_fragment_ppm 0.1155 0.0839 0.1696 peptide_length 0.0000 0.0000 0.0000 ntt -0.1338 -0.1291 -0.1721 nmc 0.0000 0.0000 0.0000 charge_1 0.0231 0.0180 0.0339 charge_2 -0.0165 -0.0178 -0.0229 charge_3 -0.0236 0.0007 -0.0518 charge_4 -0.0124 -0.0121 0.0354 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0050 -0.0075 0.0020 15.9949M 0.5723 0.5647 0.5894 unweighted_spectral_entropy -0.6764 -0.6143 -0.7257 delta_RT_loess 2.4256 2.3914 2.5311 m0 Found 61265 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 66190 target PSMs and 5273 decoy PSMs. Calculating q values. Final list yields 61267 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.38 cpu seconds or 15 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-112_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-112_percolator_decoy_psms.tsv S22049-Arjun-112_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-112_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-112_percolator_decoy_psms.tsv S22049-Arjun-112_edited.pin Started Wed Mar 8 10:54:05 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-112_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 50391 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 47762 positives and 2629 negatives, size ratio=18.1674 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 29827 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 29822 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 29785 training set positives with q<0.01 in that direction. Found 44694 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.126 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 45243 PSMs with q<0.01 Iteration 2: Estimated 45377 PSMs with q<0.01 Iteration 3: Estimated 45398 PSMs with q<0.01 Iteration 4: Estimated 45408 PSMs with q<0.01 Iteration 5: Estimated 45415 PSMs with q<0.01 Iteration 6: Estimated 45420 PSMs with q<0.01 Iteration 7: Estimated 45418 PSMs with q<0.01 Iteration 8: Estimated 45417 PSMs with q<0.01 Iteration 9: Estimated 45417 PSMs with q<0.01 Iteration 10: Estimated 45416 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0187 -0.0333 0.0004 retentiontime 0.0000 0.0000 0.0000 rank -0.1879 -0.1628 -0.1981 abs_ppm -0.0743 -0.0889 -0.0913 isotope_errors -0.4588 -0.4673 -0.3217 log10_evalue 0.5431 0.2758 1.0299 hyperscore 0.4291 0.4380 0.6629 delta_hyperscore 0.4887 0.4245 -0.0068 matched_ion_num -0.6451 -0.6279 -0.6428 complementary_ions -0.0145 0.0212 -0.0347 ion_series -0.0345 -0.0627 -0.0101 weighted_average_abs_fragment_ppm 0.2129 0.2521 0.1815 peptide_length 0.0000 0.0000 0.0000 ntt -0.0521 -0.0632 -0.1038 nmc 0.0000 0.0000 0.0000 charge_1 0.0436 0.0501 0.0330 charge_2 -0.0313 -0.0378 -0.0175 charge_3 -0.0577 -0.0465 -0.0625 charge_4 0.0475 -0.0131 0.0147 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0574 -0.0497 -0.0574 15.9949M 0.4492 0.5148 0.4966 unweighted_spectral_entropy -0.4982 -0.4559 -0.5023 delta_RT_loess 2.2139 2.0129 2.3309 m0 Found 45414 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 47762 target PSMs and 2629 decoy PSMs. Calculating q values. Final list yields 45415 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 10.58 cpu seconds or 11 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-40_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-40_percolator_decoy_psms.tsv S22049-Arjun-40_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-40_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-40_percolator_decoy_psms.tsv S22049-Arjun-40_edited.pin Started Wed Mar 8 10:54:18 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-40_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 68247 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 64498 positives and 3749 negatives, size ratio=17.2041 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 40129 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 40229 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 40335 training set positives with q<0.01 in that direction. Found 60325 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.128 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 61045 PSMs with q<0.01 Iteration 2: Estimated 61165 PSMs with q<0.01 Iteration 3: Estimated 61228 PSMs with q<0.01 Iteration 4: Estimated 61246 PSMs with q<0.01 Iteration 5: Estimated 61265 PSMs with q<0.01 Iteration 6: Estimated 61271 PSMs with q<0.01 Iteration 7: Estimated 61269 PSMs with q<0.01 Iteration 8: Estimated 61267 PSMs with q<0.01 Iteration 9: Estimated 61269 PSMs with q<0.01 Iteration 10: Estimated 61267 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0744 0.0445 0.0761 retentiontime 0.0000 0.0000 0.0000 rank -0.2152 -0.1942 -0.2155 abs_ppm -0.0625 -0.1009 -0.0908 isotope_errors -0.6689 -0.6263 -0.7126 log10_evalue 0.6897 0.7917 0.5490 hyperscore 0.6559 0.5435 0.5124 delta_hyperscore 0.9665 0.7709 0.8651 matched_ion_num -1.0092 -0.9530 -1.0213 complementary_ions -0.0724 -0.1682 -0.1372 ion_series -0.0512 -0.0402 -0.0209 weighted_average_abs_fragment_ppm 0.1063 0.1254 0.1095 peptide_length 0.0000 0.0000 0.0000 ntt -0.1173 -0.1025 -0.0984 nmc 0.0000 0.0000 0.0000 charge_1 -0.0131 0.0154 0.0194 charge_2 0.0077 -0.0228 -0.0294 charge_3 0.0070 0.0188 0.0268 charge_4 0.0376 0.0071 0.0059 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0393 -0.0379 -0.0333 15.9949M 0.4815 0.4872 0.5349 unweighted_spectral_entropy -0.4326 -0.4100 -0.3881 delta_RT_loess 2.7390 2.7480 2.7162 m0 Found 61258 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 64498 target PSMs and 3749 decoy PSMs. Calculating q values. Final list yields 61258 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.02 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-19_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-19_percolator_decoy_psms.tsv S22049-Arjun-19_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-19_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-19_percolator_decoy_psms.tsv S22049-Arjun-19_edited.pin Started Wed Mar 8 10:54:34 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-19_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 74875 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 69318 positives and 5557 negatives, size ratio=12.474 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 41490 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 41611 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 41537 training set positives with q<0.01 in that direction. Found 62300 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.239 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 63888 PSMs with q<0.01 Iteration 2: Estimated 64176 PSMs with q<0.01 Iteration 3: Estimated 64241 PSMs with q<0.01 Iteration 4: Estimated 64267 PSMs with q<0.01 Iteration 5: Estimated 64273 PSMs with q<0.01 Iteration 6: Estimated 64275 PSMs with q<0.01 Iteration 7: Estimated 64275 PSMs with q<0.01 Iteration 8: Estimated 64276 PSMs with q<0.01 Iteration 9: Estimated 64276 PSMs with q<0.01 Iteration 10: Estimated 64276 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0003 0.0400 0.0064 retentiontime 0.0000 0.0000 0.0000 rank -0.2694 -0.2700 -0.2433 abs_ppm -0.1351 -0.1132 -0.1197 isotope_errors -0.6807 -0.6366 -0.4854 log10_evalue 0.8336 1.1200 1.0344 hyperscore 0.5940 0.4629 0.5933 delta_hyperscore 0.5489 0.2949 0.4764 matched_ion_num -0.9495 -0.9139 -0.8677 complementary_ions -0.0027 0.1573 -0.0447 ion_series -0.0293 -0.0102 -0.0349 weighted_average_abs_fragment_ppm 0.1564 0.1802 0.1813 peptide_length 0.0000 0.0000 0.0000 ntt -0.1869 -0.1488 -0.1827 nmc 0.0000 0.0000 0.0000 charge_1 0.0178 0.0103 0.0148 charge_2 -0.0211 -0.0299 -0.0202 charge_3 0.0104 0.0645 0.0155 charge_4 -0.0026 0.0060 0.0076 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0240 -0.0727 -0.0416 15.9949M 0.5809 0.5206 0.5420 unweighted_spectral_entropy -0.6524 -0.5132 -0.6119 delta_RT_loess 2.7121 2.1208 2.2994 m0 Found 64236 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 69318 target PSMs and 5557 decoy PSMs. Calculating q values. Final list yields 64237 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.81 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-96_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-96_percolator_decoy_psms.tsv S22049-Arjun-96_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-96_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-96_percolator_decoy_psms.tsv S22049-Arjun-96_edited.pin Started Wed Mar 8 10:54:52 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-96_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 61536 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 57538 positives and 3998 negatives, size ratio=14.3917 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 35316 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 35317 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 35183 training set positives with q<0.01 in that direction. Found 52876 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.004 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 53645 PSMs with q<0.01 Iteration 2: Estimated 53820 PSMs with q<0.01 Iteration 3: Estimated 53931 PSMs with q<0.01 Iteration 4: Estimated 53940 PSMs with q<0.01 Iteration 5: Estimated 53943 PSMs with q<0.01 Iteration 6: Estimated 53944 PSMs with q<0.01 Iteration 7: Estimated 53945 PSMs with q<0.01 Iteration 8: Estimated 53945 PSMs with q<0.01 Iteration 9: Estimated 53945 PSMs with q<0.01 Iteration 10: Estimated 53945 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0355 -0.0278 0.0695 retentiontime 0.0000 0.0000 0.0000 rank -0.2319 -0.1713 -0.1884 abs_ppm -0.1162 -0.1205 -0.0917 isotope_errors -0.8066 -0.8809 -0.7178 log10_evalue -0.0049 0.1960 0.4968 hyperscore 0.5137 0.4487 0.4720 delta_hyperscore 0.7917 0.2751 0.4070 matched_ion_num -0.6698 -0.7141 -0.6668 complementary_ions -0.0652 0.1410 0.1204 ion_series -0.0460 -0.0428 -0.0382 weighted_average_abs_fragment_ppm 0.1031 0.2005 0.1216 peptide_length 0.0000 0.0000 0.0000 ntt -0.1481 -0.1854 -0.2105 nmc 0.0000 0.0000 0.0000 charge_1 -0.0007 0.0101 -0.0478 charge_2 -0.0012 -0.0144 0.0245 charge_3 0.0065 0.0081 0.0701 charge_4 -0.0009 0.0168 0.0246 charge_5 -0.0095 -0.0091 -0.0076 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0355 -0.0269 -0.0196 15.9949M 0.5059 0.5654 0.5073 unweighted_spectral_entropy -0.6186 -0.6644 -0.5507 delta_RT_loess 2.3521 2.2554 1.8912 m0 Found 53895 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 57538 target PSMs and 3998 decoy PSMs. Calculating q values. Final list yields 53899 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.15 cpu seconds or 17 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-92_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-92_percolator_decoy_psms.tsv S22049-Arjun-92_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-92_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-92_percolator_decoy_psms.tsv S22049-Arjun-92_edited.pin Started Wed Mar 8 10:55:10 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-92_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 60556 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 57032 positives and 3524 negatives, size ratio=16.1839 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 35260 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 35384 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 35178 training set positives with q<0.01 in that direction. Found 52911 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.957 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 53761 PSMs with q<0.01 Iteration 2: Estimated 53902 PSMs with q<0.01 Iteration 3: Estimated 53958 PSMs with q<0.01 Iteration 4: Estimated 53966 PSMs with q<0.01 Iteration 5: Estimated 53980 PSMs with q<0.01 Iteration 6: Estimated 53984 PSMs with q<0.01 Iteration 7: Estimated 53989 PSMs with q<0.01 Iteration 8: Estimated 53989 PSMs with q<0.01 Iteration 9: Estimated 53987 PSMs with q<0.01 Iteration 10: Estimated 53992 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0264 -0.0254 0.0158 retentiontime 0.0000 0.0000 0.0000 rank -0.1715 -0.2128 -0.1880 abs_ppm -0.1222 -0.0938 -0.1018 isotope_errors -0.7131 -0.8240 -0.6138 log10_evalue 0.2904 -0.2201 0.5687 hyperscore 0.5146 0.4890 0.5424 delta_hyperscore 0.4076 1.2454 0.3005 matched_ion_num -0.6311 -0.7575 -0.6491 complementary_ions -0.0439 -0.0493 -0.0510 ion_series -0.0607 -0.0272 -0.0619 weighted_average_abs_fragment_ppm 0.2335 0.1765 0.2526 peptide_length 0.0000 0.0000 0.0000 ntt -0.1316 -0.1286 -0.1232 nmc 0.0000 0.0000 0.0000 charge_1 0.0094 0.0338 0.0313 charge_2 -0.0023 -0.0316 -0.0448 charge_3 -0.0223 -0.0060 0.0478 charge_4 -0.0131 -0.0184 -0.0184 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0054 -0.0050 -0.0375 15.9949M 0.5250 0.4815 0.5353 unweighted_spectral_entropy -0.5598 -0.5295 -0.5551 delta_RT_loess 2.3084 2.6031 2.4017 m0 Found 53982 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 57032 target PSMs and 3524 decoy PSMs. Calculating q values. Final list yields 53982 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.61 cpu seconds or 15 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-85_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-85_percolator_decoy_psms.tsv S22049-Arjun-85_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-85_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-85_percolator_decoy_psms.tsv S22049-Arjun-85_edited.pin Started Wed Mar 8 10:55:27 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-85_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 67958 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 63635 positives and 4323 negatives, size ratio=14.7201 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 38923 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 39012 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 38872 training set positives with q<0.01 in that direction. Found 58378 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.093 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 59270 PSMs with q<0.01 Iteration 2: Estimated 59530 PSMs with q<0.01 Iteration 3: Estimated 59608 PSMs with q<0.01 Iteration 4: Estimated 59638 PSMs with q<0.01 Iteration 5: Estimated 59638 PSMs with q<0.01 Iteration 6: Estimated 59637 PSMs with q<0.01 Iteration 7: Estimated 59638 PSMs with q<0.01 Iteration 8: Estimated 59638 PSMs with q<0.01 Iteration 9: Estimated 59638 PSMs with q<0.01 Iteration 10: Estimated 59638 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0231 -0.0547 0.0661 retentiontime 0.0000 0.0000 0.0000 rank -0.2206 -0.2078 -0.2117 abs_ppm -0.1124 -0.1063 -0.0986 isotope_errors -0.6339 -0.2182 -0.5883 log10_evalue 0.2612 1.5478 0.2437 hyperscore 0.4743 0.7024 0.6815 delta_hyperscore 0.8012 0.6539 0.8690 matched_ion_num -0.8189 -1.0730 -0.8560 complementary_ions -0.0133 -0.0308 0.0511 ion_series 0.0070 0.0037 0.0010 weighted_average_abs_fragment_ppm 0.1777 0.1901 0.0652 peptide_length 0.0000 0.0000 0.0000 ntt -0.1325 -0.1737 -0.1327 nmc 0.0000 0.0000 0.0000 charge_1 0.0268 0.0091 0.0003 charge_2 -0.0227 -0.0214 -0.0083 charge_3 -0.0072 0.0227 0.0110 charge_4 -0.0146 0.0315 0.0344 charge_5 -0.0184 -0.0119 -0.0163 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0216 -0.0072 -0.0093 15.9949M 0.5326 0.5098 0.5096 unweighted_spectral_entropy -0.4826 -0.4013 -0.4704 delta_RT_loess 2.3296 2.3586 2.2014 m0 Found 59599 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 63635 target PSMs and 4323 decoy PSMs. Calculating q values. Final list yields 59599 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.93 cpu seconds or 17 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-26_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-26_percolator_decoy_psms.tsv S22049-Arjun-26_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-26_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-26_percolator_decoy_psms.tsv S22049-Arjun-26_edited.pin Started Wed Mar 8 10:55:46 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-26_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 62903 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 58550 positives and 4353 negatives, size ratio=13.4505 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 35504 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 35431 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 35469 training set positives with q<0.01 in that direction. Found 53159 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.155 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 54164 PSMs with q<0.01 Iteration 2: Estimated 54427 PSMs with q<0.01 Iteration 3: Estimated 54508 PSMs with q<0.01 Iteration 4: Estimated 54521 PSMs with q<0.01 Iteration 5: Estimated 54525 PSMs with q<0.01 Iteration 6: Estimated 54522 PSMs with q<0.01 Iteration 7: Estimated 54527 PSMs with q<0.01 Iteration 8: Estimated 54528 PSMs with q<0.01 Iteration 9: Estimated 54528 PSMs with q<0.01 Iteration 10: Estimated 54529 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0968 0.1086 0.1223 retentiontime 0.0000 0.0000 0.0000 rank -0.2325 -0.2069 -0.2399 abs_ppm -0.0991 -0.1179 -0.0781 isotope_errors -0.3951 -0.6692 -0.4869 log10_evalue 0.8552 1.0719 0.9221 hyperscore 0.4863 0.4593 0.4952 delta_hyperscore 0.2744 0.2574 0.1946 matched_ion_num -0.5993 -0.7601 -0.6607 complementary_ions -0.0529 -0.0482 -0.0162 ion_series 0.0123 0.0045 0.0012 weighted_average_abs_fragment_ppm 0.1679 0.0688 0.0760 peptide_length 0.0000 0.0000 0.0000 ntt -0.1485 -0.1162 -0.1532 nmc 0.0000 0.0000 0.0000 charge_1 0.0197 0.0007 0.0091 charge_2 -0.0266 -0.0090 -0.0154 charge_3 0.0651 0.0794 0.0589 charge_4 -0.0115 -0.0151 -0.0068 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0593 -0.0668 -0.0361 15.9949M 0.5105 0.4844 0.4949 unweighted_spectral_entropy -0.6122 -0.5629 -0.4638 delta_RT_loess 2.1730 2.1603 1.9146 m0 Found 54510 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 58550 target PSMs and 4353 decoy PSMs. Calculating q values. Final list yields 54517 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.06 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-136_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-136_percolator_decoy_psms.tsv S22049-Arjun-136_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-136_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-136_percolator_decoy_psms.tsv S22049-Arjun-136_edited.pin Started Wed Mar 8 10:56:02 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-136_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 60287 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 56382 positives and 3905 negatives, size ratio=14.4384 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 34340 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 34408 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 34424 training set positives with q<0.01 in that direction. Found 51554 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.191 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 52493 PSMs with q<0.01 Iteration 2: Estimated 52739 PSMs with q<0.01 Iteration 3: Estimated 52767 PSMs with q<0.01 Iteration 4: Estimated 52775 PSMs with q<0.01 Iteration 5: Estimated 52769 PSMs with q<0.01 Iteration 6: Estimated 52771 PSMs with q<0.01 Iteration 7: Estimated 52774 PSMs with q<0.01 Iteration 8: Estimated 52774 PSMs with q<0.01 Iteration 9: Estimated 52773 PSMs with q<0.01 Iteration 10: Estimated 52775 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0069 0.0185 0.1060 retentiontime 0.0000 0.0000 0.0000 rank -0.2673 -0.2414 -0.2586 abs_ppm -0.0752 -0.0613 -0.0791 isotope_errors -0.6542 -0.7835 -0.6166 log10_evalue 0.7145 0.3141 0.4874 hyperscore 0.4861 0.6276 0.5521 delta_hyperscore 0.1286 0.5584 0.3006 matched_ion_num -0.6114 -0.5952 -0.5922 complementary_ions -0.1226 0.0345 -0.0510 ion_series -0.0069 -0.0266 -0.0075 weighted_average_abs_fragment_ppm 0.2012 0.2369 0.0997 peptide_length 0.0000 0.0000 0.0000 ntt -0.1519 -0.1603 -0.1322 nmc 0.0000 0.0000 0.0000 charge_1 0.0361 0.0351 0.0268 charge_2 -0.0443 -0.0431 -0.0410 charge_3 0.0299 0.0276 0.0527 charge_4 0.0103 0.0171 0.0265 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0152 -0.0208 0.0045 15.9949M 0.5819 0.5064 0.5116 unweighted_spectral_entropy -0.5529 -0.5828 -0.5185 delta_RT_loess 2.2315 2.6521 1.9219 m0 Found 52766 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 56382 target PSMs and 3905 decoy PSMs. Calculating q values. Final list yields 52766 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 17.42 cpu seconds or 17 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-70_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-70_percolator_decoy_psms.tsv S22049-Arjun-70_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-70_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-70_percolator_decoy_psms.tsv S22049-Arjun-70_edited.pin Started Wed Mar 8 10:56:22 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-70_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 74234 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 69113 positives and 5121 negatives, size ratio=13.496 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 41767 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 41780 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 41789 training set positives with q<0.01 in that direction. Found 62649 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.282 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 64103 PSMs with q<0.01 Iteration 2: Estimated 64339 PSMs with q<0.01 Iteration 3: Estimated 64434 PSMs with q<0.01 Iteration 4: Estimated 64468 PSMs with q<0.01 Iteration 5: Estimated 64474 PSMs with q<0.01 Iteration 6: Estimated 64467 PSMs with q<0.01 Iteration 7: Estimated 64472 PSMs with q<0.01 Iteration 8: Estimated 64474 PSMs with q<0.01 Iteration 9: Estimated 64471 PSMs with q<0.01 Iteration 10: Estimated 64471 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0961 0.0207 0.1129 retentiontime 0.0000 0.0000 0.0000 rank -0.2840 -0.2622 -0.2640 abs_ppm -0.1310 -0.1405 -0.1160 isotope_errors -0.9463 -0.5996 -0.6825 log10_evalue 0.0636 0.1565 0.2239 hyperscore 0.5172 0.8133 0.5569 delta_hyperscore 0.8740 1.4371 1.1336 matched_ion_num -0.8149 -1.0374 -0.8751 complementary_ions 0.0364 -0.1867 -0.0787 ion_series -0.0089 -0.0330 -0.0374 weighted_average_abs_fragment_ppm 0.0335 0.0950 0.0715 peptide_length 0.0000 0.0000 0.0000 ntt -0.1388 -0.1195 -0.1542 nmc 0.0000 0.0000 0.0000 charge_1 0.0143 0.0486 0.0326 charge_2 -0.0289 -0.0569 -0.0387 charge_3 0.0406 0.0066 -0.0004 charge_4 0.0288 0.0725 0.0758 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0413 -0.0423 -0.0387 15.9949M 0.4831 0.5189 0.4936 unweighted_spectral_entropy -0.5648 -0.5784 -0.5876 delta_RT_loess 2.5998 2.8219 2.6568 m0 Found 64440 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 69113 target PSMs and 5121 decoy PSMs. Calculating q values. Final list yields 64441 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 19.65 cpu seconds or 20 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-123_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-123_percolator_decoy_psms.tsv S22049-Arjun-123_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-123_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-123_percolator_decoy_psms.tsv S22049-Arjun-123_edited.pin Started Wed Mar 8 10:56:44 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-123_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 60383 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 56686 positives and 3697 negatives, size ratio=15.333 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 34538 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 34486 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 34533 training set positives with q<0.01 in that direction. Found 51776 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.981 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 52883 PSMs with q<0.01 Iteration 2: Estimated 53122 PSMs with q<0.01 Iteration 3: Estimated 53195 PSMs with q<0.01 Iteration 4: Estimated 53199 PSMs with q<0.01 Iteration 5: Estimated 53198 PSMs with q<0.01 Iteration 6: Estimated 53202 PSMs with q<0.01 Iteration 7: Estimated 53205 PSMs with q<0.01 Iteration 8: Estimated 53206 PSMs with q<0.01 Iteration 9: Estimated 53206 PSMs with q<0.01 Iteration 10: Estimated 53205 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0394 0.0355 0.0002 retentiontime 0.0000 0.0000 0.0000 rank -0.2004 -0.2292 -0.2143 abs_ppm -0.1172 -0.0737 -0.1013 isotope_errors -0.8447 -0.8280 -0.6187 log10_evalue 0.5584 0.2175 0.4003 hyperscore 0.3802 0.5335 0.4849 delta_hyperscore 0.5327 0.6655 0.7043 matched_ion_num -0.7375 -0.6464 -0.7699 complementary_ions -0.0267 0.1248 0.1193 ion_series -0.0203 0.0188 0.0033 weighted_average_abs_fragment_ppm 0.2036 0.1837 0.1780 peptide_length 0.0000 0.0000 0.0000 ntt -0.1866 -0.2079 -0.1736 nmc 0.0000 0.0000 0.0000 charge_1 0.0060 0.0255 0.0188 charge_2 -0.0027 -0.0288 -0.0155 charge_3 -0.0142 0.0149 -0.0155 charge_4 -0.0159 -0.0104 -0.0114 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0106 -0.0441 -0.0110 15.9949M 0.4689 0.4328 0.4264 unweighted_spectral_entropy -0.6301 -0.6070 -0.6160 delta_RT_loess 2.5006 2.3216 2.4528 m0 Found 53191 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 56686 target PSMs and 3697 decoy PSMs. Calculating q values. Final list yields 53197 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.25 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-33_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-33_percolator_decoy_psms.tsv S22049-Arjun-33_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-33_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-33_percolator_decoy_psms.tsv S22049-Arjun-33_edited.pin Started Wed Mar 8 10:57:00 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-33_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 66024 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 60666 positives and 5358 negatives, size ratio=11.3225 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 35992 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36130 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 35950 training set positives with q<0.01 in that direction. Found 54023 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.205 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55454 PSMs with q<0.01 Iteration 2: Estimated 55684 PSMs with q<0.01 Iteration 3: Estimated 55745 PSMs with q<0.01 Iteration 4: Estimated 55749 PSMs with q<0.01 Iteration 5: Estimated 55755 PSMs with q<0.01 Iteration 6: Estimated 55763 PSMs with q<0.01 Iteration 7: Estimated 55762 PSMs with q<0.01 Iteration 8: Estimated 55765 PSMs with q<0.01 Iteration 9: Estimated 55765 PSMs with q<0.01 Iteration 10: Estimated 55765 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0193 -0.0115 0.0729 retentiontime 0.0000 0.0000 0.0000 rank -0.2340 -0.2347 -0.2345 abs_ppm -0.1273 -0.1545 -0.1126 isotope_errors -0.7019 -0.5094 -0.5421 log10_evalue 0.3322 0.7314 0.4612 hyperscore 0.5172 0.6562 0.5621 delta_hyperscore 0.6268 0.3498 0.5479 matched_ion_num -0.8971 -0.7892 -0.7001 complementary_ions 0.0328 -0.0144 -0.0113 ion_series -0.0046 0.0227 -0.0093 weighted_average_abs_fragment_ppm 0.1620 0.1640 0.1123 peptide_length 0.0000 0.0000 0.0000 ntt -0.1668 -0.2264 -0.1527 nmc 0.0000 0.0000 0.0000 charge_1 0.0218 -0.0011 0.0166 charge_2 -0.0179 0.0003 -0.0137 charge_3 -0.0156 0.0046 -0.0142 charge_4 -0.0055 -0.0099 0.0106 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0283 -0.0087 -0.0446 15.9949M 0.6116 0.6398 0.5827 unweighted_spectral_entropy -0.5848 -0.6174 -0.5958 delta_RT_loess 2.2275 2.3400 2.2041 m0 Found 55751 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 60666 target PSMs and 5358 decoy PSMs. Calculating q values. Final list yields 55752 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.17 cpu seconds or 13 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-78_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-78_percolator_decoy_psms.tsv S22049-Arjun-78_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-78_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-78_percolator_decoy_psms.tsv S22049-Arjun-78_edited.pin Started Wed Mar 8 10:57:15 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-78_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 60729 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 56954 positives and 3775 negatives, size ratio=15.0872 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 34991 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 34834 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 35118 training set positives with q<0.01 in that direction. Found 52478 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.996 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 53249 PSMs with q<0.01 Iteration 2: Estimated 53458 PSMs with q<0.01 Iteration 3: Estimated 53532 PSMs with q<0.01 Iteration 4: Estimated 53562 PSMs with q<0.01 Iteration 5: Estimated 53569 PSMs with q<0.01 Iteration 6: Estimated 53574 PSMs with q<0.01 Iteration 7: Estimated 53574 PSMs with q<0.01 Iteration 8: Estimated 53574 PSMs with q<0.01 Iteration 9: Estimated 53574 PSMs with q<0.01 Iteration 10: Estimated 53574 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1031 -0.0070 0.0200 retentiontime 0.0000 0.0000 0.0000 rank -0.2421 -0.2365 -0.2057 abs_ppm -0.0485 -0.0758 -0.0598 isotope_errors -0.4722 -0.6410 -0.4562 log10_evalue 1.2558 0.7465 0.6253 hyperscore 0.4837 0.3432 0.5015 delta_hyperscore 0.0062 0.6953 0.4585 matched_ion_num -0.8723 -0.9734 -0.7586 complementary_ions 0.1702 -0.0242 0.0495 ion_series -0.0669 -0.0092 0.0081 weighted_average_abs_fragment_ppm 0.2475 0.2793 0.1920 peptide_length 0.0000 0.0000 0.0000 ntt -0.1029 -0.1576 -0.1661 nmc 0.0000 0.0000 0.0000 charge_1 0.0410 0.0484 0.0085 charge_2 -0.0318 -0.0328 -0.0084 charge_3 -0.0407 -0.0543 -0.0321 charge_4 0.0339 0.0122 0.1061 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0670 -0.0769 -0.0628 15.9949M 0.5936 0.5214 0.5111 unweighted_spectral_entropy -0.5712 -0.4853 -0.5119 delta_RT_loess 2.3766 2.4962 2.2928 m0 Found 53540 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 56954 target PSMs and 3775 decoy PSMs. Calculating q values. Final list yields 53540 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.57 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-110_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-110_percolator_decoy_psms.tsv S22049-Arjun-110_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-110_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-110_percolator_decoy_psms.tsv S22049-Arjun-110_edited.pin Started Wed Mar 8 10:57:31 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-110_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 49834 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 46553 positives and 3281 negatives, size ratio=14.1887 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 28308 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 28367 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 28369 training set positives with q<0.01 in that direction. Found 42516 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.793 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 43130 PSMs with q<0.01 Iteration 2: Estimated 43284 PSMs with q<0.01 Iteration 3: Estimated 43344 PSMs with q<0.01 Iteration 4: Estimated 43387 PSMs with q<0.01 Iteration 5: Estimated 43401 PSMs with q<0.01 Iteration 6: Estimated 43408 PSMs with q<0.01 Iteration 7: Estimated 43413 PSMs with q<0.01 Iteration 8: Estimated 43413 PSMs with q<0.01 Iteration 9: Estimated 43415 PSMs with q<0.01 Iteration 10: Estimated 43415 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0467 0.0289 0.0621 retentiontime 0.0000 0.0000 0.0000 rank -0.2311 -0.2225 -0.2247 abs_ppm -0.0941 -0.0980 -0.1170 isotope_errors -0.6546 -0.5893 -0.5905 log10_evalue 0.5390 0.3380 0.9407 hyperscore 0.3788 0.4227 0.3705 delta_hyperscore 0.5492 0.6596 0.6647 matched_ion_num -0.6086 -0.6939 -0.7903 complementary_ions -0.1095 -0.0966 -0.2272 ion_series 0.0141 -0.0019 -0.0120 weighted_average_abs_fragment_ppm 0.2532 0.1598 0.0950 peptide_length 0.0000 0.0000 0.0000 ntt -0.0685 -0.0796 -0.0606 nmc 0.0000 0.0000 0.0000 charge_1 0.0377 0.0331 -0.0062 charge_2 -0.0255 -0.0245 0.0159 charge_3 -0.0719 -0.0508 -0.0553 charge_4 -0.0146 -0.0133 -0.0135 charge_5 -0.0103 -0.0094 -0.0098 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0026 0.0004 -0.0177 15.9949M 0.5106 0.5244 0.5242 unweighted_spectral_entropy -0.4443 -0.4153 -0.4620 delta_RT_loess 2.2983 2.1000 2.1819 m0 Found 43381 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 46553 target PSMs and 3281 decoy PSMs. Calculating q values. Final list yields 43384 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 10.19 cpu seconds or 11 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-49_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-49_percolator_decoy_psms.tsv S22049-Arjun-49_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-49_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-49_percolator_decoy_psms.tsv S22049-Arjun-49_edited.pin Started Wed Mar 8 10:57:43 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-49_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 75172 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 70388 positives and 4784 negatives, size ratio=14.7132 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 43062 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 43239 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 43202 training set positives with q<0.01 in that direction. Found 64733 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.601 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 65790 PSMs with q<0.01 Iteration 2: Estimated 66008 PSMs with q<0.01 Iteration 3: Estimated 66108 PSMs with q<0.01 Iteration 4: Estimated 66111 PSMs with q<0.01 Iteration 5: Estimated 66122 PSMs with q<0.01 Iteration 6: Estimated 66127 PSMs with q<0.01 Iteration 7: Estimated 66126 PSMs with q<0.01 Iteration 8: Estimated 66127 PSMs with q<0.01 Iteration 9: Estimated 66125 PSMs with q<0.01 Iteration 10: Estimated 66131 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0300 0.0575 0.0125 retentiontime 0.0000 0.0000 0.0000 rank -0.1682 -0.1958 -0.2348 abs_ppm -0.1424 -0.0887 -0.1532 isotope_errors -0.6463 -0.4632 -0.7768 log10_evalue 1.2422 1.4781 1.5607 hyperscore 0.4466 0.4919 0.3971 delta_hyperscore 0.6304 0.5676 0.2772 matched_ion_num -1.0712 -1.0147 -1.2125 complementary_ions -0.1880 -0.2042 -0.2433 ion_series -0.0369 -0.0117 -0.0115 weighted_average_abs_fragment_ppm 0.2129 0.0931 0.0770 peptide_length 0.0000 0.0000 0.0000 ntt -0.1270 -0.1265 -0.1140 nmc 0.0000 0.0000 0.0000 charge_1 0.0370 0.0061 0.0072 charge_2 -0.0332 -0.0210 -0.0039 charge_3 -0.0182 0.0442 -0.0067 charge_4 0.0136 0.0017 -0.0120 charge_5 -0.0081 -0.0077 -0.0099 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0820 -0.0359 -0.0529 15.9949M 0.5441 0.4846 0.5668 unweighted_spectral_entropy -0.6164 -0.3762 -0.4499 delta_RT_loess 2.2148 2.1075 2.7261 m0 Found 66061 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 70388 target PSMs and 4784 decoy PSMs. Calculating q values. Final list yields 66062 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 17.41 cpu seconds or 18 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-129_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-129_percolator_decoy_psms.tsv S22049-Arjun-129_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-129_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-129_percolator_decoy_psms.tsv S22049-Arjun-129_edited.pin Started Wed Mar 8 10:58:03 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-129_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 48874 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 46147 positives and 2727 negatives, size ratio=16.9223 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 28653 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 28556 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 28590 training set positives with q<0.01 in that direction. Found 42907 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.853 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 43427 PSMs with q<0.01 Iteration 2: Estimated 43613 PSMs with q<0.01 Iteration 3: Estimated 43665 PSMs with q<0.01 Iteration 4: Estimated 43684 PSMs with q<0.01 Iteration 5: Estimated 43689 PSMs with q<0.01 Iteration 6: Estimated 43690 PSMs with q<0.01 Iteration 7: Estimated 43691 PSMs with q<0.01 Iteration 8: Estimated 43691 PSMs with q<0.01 Iteration 9: Estimated 43691 PSMs with q<0.01 Iteration 10: Estimated 43691 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1210 0.0435 0.0825 retentiontime 0.0000 0.0000 0.0000 rank -0.1678 -0.1585 -0.1646 abs_ppm -0.1097 -0.1455 -0.0839 isotope_errors -0.4473 -0.5712 -0.3901 log10_evalue 0.3774 0.8967 0.8805 hyperscore 0.4257 0.3525 0.3940 delta_hyperscore 0.5047 0.2404 -0.2037 matched_ion_num -0.5428 -0.8559 -0.5031 complementary_ions -0.0607 0.0621 0.0955 ion_series -0.0294 -0.0518 -0.0543 weighted_average_abs_fragment_ppm 0.1329 0.1280 0.1511 peptide_length 0.0000 0.0000 0.0000 ntt -0.0839 -0.0911 -0.1002 nmc 0.0000 0.0000 0.0000 charge_1 -0.0025 -0.0091 -0.0107 charge_2 -0.0040 0.0051 0.0070 charge_3 0.0498 0.0318 0.0293 charge_4 -0.0093 -0.0104 -0.0087 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0074 -0.0360 -0.0039 15.9949M 0.4879 0.4645 0.4879 unweighted_spectral_entropy -0.5664 -0.4777 -0.4481 delta_RT_loess 2.0624 2.3026 1.9155 m0 Found 43693 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 46147 target PSMs and 2727 decoy PSMs. Calculating q values. Final list yields 43693 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 12.54 cpu seconds or 12 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-77_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-77_percolator_decoy_psms.tsv S22049-Arjun-77_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-77_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-77_percolator_decoy_psms.tsv S22049-Arjun-77_edited.pin Started Wed Mar 8 10:58:17 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-77_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 61530 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 57885 positives and 3645 negatives, size ratio=15.8807 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 35688 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 35703 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 35853 training set positives with q<0.01 in that direction. Found 53629 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.991 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 54271 PSMs with q<0.01 Iteration 2: Estimated 54441 PSMs with q<0.01 Iteration 3: Estimated 54536 PSMs with q<0.01 Iteration 4: Estimated 54554 PSMs with q<0.01 Iteration 5: Estimated 54564 PSMs with q<0.01 Iteration 6: Estimated 54563 PSMs with q<0.01 Iteration 7: Estimated 54564 PSMs with q<0.01 Iteration 8: Estimated 54564 PSMs with q<0.01 Iteration 9: Estimated 54565 PSMs with q<0.01 Iteration 10: Estimated 54566 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0293 0.0302 0.0348 retentiontime 0.0000 0.0000 0.0000 rank -0.2037 -0.1950 -0.1951 abs_ppm -0.0950 -0.1115 -0.1203 isotope_errors -0.3291 -0.4853 -0.2981 log10_evalue 0.4847 0.9103 1.3990 hyperscore 0.6498 0.7278 0.4949 delta_hyperscore 0.8777 0.4762 0.5931 matched_ion_num -0.6367 -0.8305 -1.0236 complementary_ions -0.0295 0.1416 -0.0426 ion_series -0.0413 0.0136 0.0007 weighted_average_abs_fragment_ppm 0.1836 0.1661 0.2365 peptide_length 0.0000 0.0000 0.0000 ntt -0.1924 -0.1469 -0.1496 nmc 0.0000 0.0000 0.0000 charge_1 -0.0127 0.0070 0.0283 charge_2 0.0139 -0.0226 -0.0226 charge_3 -0.0168 0.0331 -0.0285 charge_4 0.0454 0.0374 0.0308 charge_5 -0.0161 -0.0180 -0.0176 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0428 -0.0137 -0.0515 15.9949M 0.4920 0.5043 0.4993 unweighted_spectral_entropy -0.4422 -0.4629 -0.4493 delta_RT_loess 2.3055 2.5762 2.5138 m0 Found 54586 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 57885 target PSMs and 3645 decoy PSMs. Calculating q values. Final list yields 54587 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.26 cpu seconds or 15 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-36_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-36_percolator_decoy_psms.tsv S22049-Arjun-36_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-36_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-36_percolator_decoy_psms.tsv S22049-Arjun-36_edited.pin Started Wed Mar 8 10:58:33 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-36_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 61623 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 56479 positives and 5144 negatives, size ratio=10.9796 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 33306 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 33325 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 33426 training set positives with q<0.01 in that direction. Found 49995 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.324 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 51214 PSMs with q<0.01 Iteration 2: Estimated 51448 PSMs with q<0.01 Iteration 3: Estimated 51539 PSMs with q<0.01 Iteration 4: Estimated 51567 PSMs with q<0.01 Iteration 5: Estimated 51569 PSMs with q<0.01 Iteration 6: Estimated 51568 PSMs with q<0.01 Iteration 7: Estimated 51566 PSMs with q<0.01 Iteration 8: Estimated 51567 PSMs with q<0.01 Iteration 9: Estimated 51570 PSMs with q<0.01 Iteration 10: Estimated 51567 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0742 0.0668 0.0358 retentiontime 0.0000 0.0000 0.0000 rank -0.2560 -0.2281 -0.2657 abs_ppm -0.1631 -0.1341 -0.1298 isotope_errors -0.4720 -0.7298 -0.7658 log10_evalue 0.6200 0.2351 0.3588 hyperscore 0.6803 0.6204 0.6915 delta_hyperscore 0.7259 0.7083 0.7954 matched_ion_num -0.8083 -0.6765 -0.7002 complementary_ions -0.0176 0.1531 0.0007 ion_series 0.0223 -0.0036 -0.0039 weighted_average_abs_fragment_ppm 0.1080 0.1189 0.0518 peptide_length 0.0000 0.0000 0.0000 ntt -0.1449 -0.1346 -0.1218 nmc 0.0000 0.0000 0.0000 charge_1 0.0128 -0.0055 -0.0241 charge_2 -0.0171 0.0001 0.0142 charge_3 0.0239 0.0302 0.0561 charge_4 -0.0055 0.0016 0.0009 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0133 -0.0590 -0.0179 15.9949M 0.6012 0.5337 0.5705 unweighted_spectral_entropy -0.7321 -0.4943 -0.6092 delta_RT_loess 2.4008 1.7730 2.2513 m0 Found 51557 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 56479 target PSMs and 5144 decoy PSMs. Calculating q values. Final list yields 51558 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.99 cpu seconds or 15 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-103_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-103_percolator_decoy_psms.tsv S22049-Arjun-103_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-103_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-103_percolator_decoy_psms.tsv S22049-Arjun-103_edited.pin Started Wed Mar 8 10:58:51 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-103_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 64326 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 60055 positives and 4271 negatives, size ratio=14.0611 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36623 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36726 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36787 training set positives with q<0.01 in that direction. Found 55049 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.102 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55974 PSMs with q<0.01 Iteration 2: Estimated 56176 PSMs with q<0.01 Iteration 3: Estimated 56228 PSMs with q<0.01 Iteration 4: Estimated 56240 PSMs with q<0.01 Iteration 5: Estimated 56245 PSMs with q<0.01 Iteration 6: Estimated 56247 PSMs with q<0.01 Iteration 7: Estimated 56246 PSMs with q<0.01 Iteration 8: Estimated 56245 PSMs with q<0.01 Iteration 9: Estimated 56245 PSMs with q<0.01 Iteration 10: Estimated 56245 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0153 0.0269 0.0361 retentiontime 0.0000 0.0000 0.0000 rank -0.1838 -0.2064 -0.1870 abs_ppm -0.1142 -0.1013 -0.0994 isotope_errors -0.6768 -0.9306 -0.6440 log10_evalue 0.2231 -0.0174 0.0830 hyperscore 0.4871 0.4655 0.5928 delta_hyperscore 0.5567 0.8232 0.9821 matched_ion_num -0.6087 -0.8319 -0.8299 complementary_ions 0.0144 0.0090 0.0428 ion_series -0.0233 -0.0197 -0.0300 weighted_average_abs_fragment_ppm 0.1747 0.1223 0.1775 peptide_length 0.0000 0.0000 0.0000 ntt -0.1309 -0.1283 -0.1705 nmc 0.0000 0.0000 0.0000 charge_1 0.0381 0.0238 0.0131 charge_2 -0.0213 -0.0140 -0.0201 charge_3 -0.0385 -0.0204 -0.0059 charge_4 -0.0247 -0.0202 0.0729 charge_5 -0.0081 -0.0082 -0.0351 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0365 -0.0303 -0.0290 15.9949M 0.4981 0.5786 0.6099 unweighted_spectral_entropy -0.5970 -0.6078 -0.5957 delta_RT_loess 2.2148 2.4099 2.5675 m0 Found 56239 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 60055 target PSMs and 4271 decoy PSMs. Calculating q values. Final list yields 56240 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.1 cpu seconds or 13 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-2_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-2_percolator_decoy_psms.tsv S22049-Arjun-2_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-2_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-2_percolator_decoy_psms.tsv S22049-Arjun-2_edited.pin Started Wed Mar 8 10:59:06 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-2_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 73975 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 68989 positives and 4986 negatives, size ratio=13.8365 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 42059 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 42174 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 42191 training set positives with q<0.01 in that direction. Found 63206 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.767 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 64308 PSMs with q<0.01 Iteration 2: Estimated 64465 PSMs with q<0.01 Iteration 3: Estimated 64558 PSMs with q<0.01 Iteration 4: Estimated 64578 PSMs with q<0.01 Iteration 5: Estimated 64584 PSMs with q<0.01 Iteration 6: Estimated 64587 PSMs with q<0.01 Iteration 7: Estimated 64587 PSMs with q<0.01 Iteration 8: Estimated 64588 PSMs with q<0.01 Iteration 9: Estimated 64589 PSMs with q<0.01 Iteration 10: Estimated 64593 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0531 0.0873 0.0828 retentiontime 0.0000 0.0000 0.0000 rank -0.2430 -0.2398 -0.2271 abs_ppm -0.1398 -0.1127 -0.1445 isotope_errors -0.5618 -0.6560 -0.9654 log10_evalue 0.7369 0.4564 0.7096 hyperscore 0.3990 0.4781 0.4932 delta_hyperscore 0.7740 0.9971 0.6181 matched_ion_num -0.9849 -0.9677 -1.0092 complementary_ions 0.0195 -0.1480 -0.1691 ion_series -0.0251 -0.0351 -0.0303 weighted_average_abs_fragment_ppm 0.1622 0.0611 0.0599 peptide_length 0.0000 0.0000 0.0000 ntt -0.1577 -0.1528 -0.1578 nmc 0.0000 0.0000 0.0000 charge_1 0.0196 0.0132 0.0076 charge_2 -0.0134 -0.0198 -0.0242 charge_3 -0.0185 0.0241 0.0543 charge_4 -0.0142 -0.0105 0.0040 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0372 -0.0240 -0.0286 15.9949M 0.5765 0.5595 0.5553 unweighted_spectral_entropy -0.6367 -0.5395 -0.5467 delta_RT_loess 2.5978 2.5205 2.6965 m0 Found 64579 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 68989 target PSMs and 4986 decoy PSMs. Calculating q values. Final list yields 64581 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.74 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-51_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-51_percolator_decoy_psms.tsv S22049-Arjun-51_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-51_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-51_percolator_decoy_psms.tsv S22049-Arjun-51_edited.pin Started Wed Mar 8 10:59:25 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-51_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 76232 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 71161 positives and 5071 negatives, size ratio=14.0329 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 43442 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 43683 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 43709 training set positives with q<0.01 in that direction. Found 65396 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.379 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 66514 PSMs with q<0.01 Iteration 2: Estimated 66721 PSMs with q<0.01 Iteration 3: Estimated 66777 PSMs with q<0.01 Iteration 4: Estimated 66789 PSMs with q<0.01 Iteration 5: Estimated 66800 PSMs with q<0.01 Iteration 6: Estimated 66803 PSMs with q<0.01 Iteration 7: Estimated 66809 PSMs with q<0.01 Iteration 8: Estimated 66808 PSMs with q<0.01 Iteration 9: Estimated 66810 PSMs with q<0.01 Iteration 10: Estimated 66811 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0691 0.1058 0.0484 retentiontime 0.0000 0.0000 0.0000 rank -0.2484 -0.2084 -0.2519 abs_ppm -0.1582 -0.1438 -0.1219 isotope_errors -0.5307 -0.7437 -0.5983 log10_evalue 1.0513 0.7159 0.7838 hyperscore 0.5524 0.5082 0.5152 delta_hyperscore 0.6026 0.3965 0.5677 matched_ion_num -0.9807 -0.8152 -0.9175 complementary_ions -0.1120 -0.1220 -0.1343 ion_series -0.0474 -0.0258 -0.0463 weighted_average_abs_fragment_ppm 0.1391 0.0631 0.1178 peptide_length 0.0000 0.0000 0.0000 ntt -0.1818 -0.1079 -0.1525 nmc 0.0000 0.0000 0.0000 charge_1 0.0236 0.0260 0.0225 charge_2 -0.0216 -0.0211 -0.0080 charge_3 -0.0106 -0.0122 -0.0392 charge_4 0.0118 -0.0143 -0.0220 charge_5 -0.0164 -0.0119 -0.0135 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0430 -0.0563 -0.0486 15.9949M 0.5470 0.5673 0.5552 unweighted_spectral_entropy -0.5631 -0.5364 -0.5502 delta_RT_loess 2.7561 2.4588 2.4942 m0 Found 66822 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 71161 target PSMs and 5071 decoy PSMs. Calculating q values. Final list yields 66822 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 27.55 cpu seconds or 28 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-60-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-60-2nd_percolator_decoy_psms.tsv S22049-Arjun-60-2nd_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-60-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-60-2nd_percolator_decoy_psms.tsv S22049-Arjun-60-2nd_edited.pin Started Wed Mar 8 10:59:55 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-60-2nd_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 66820 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 62324 positives and 4496 negatives, size ratio=13.8621 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 37671 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 37726 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 37929 training set positives with q<0.01 in that direction. Found 56664 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.271 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 57851 PSMs with q<0.01 Iteration 2: Estimated 58145 PSMs with q<0.01 Iteration 3: Estimated 58239 PSMs with q<0.01 Iteration 4: Estimated 58279 PSMs with q<0.01 Iteration 5: Estimated 58289 PSMs with q<0.01 Iteration 6: Estimated 58299 PSMs with q<0.01 Iteration 7: Estimated 58305 PSMs with q<0.01 Iteration 8: Estimated 58307 PSMs with q<0.01 Iteration 9: Estimated 58308 PSMs with q<0.01 Iteration 10: Estimated 58309 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0082 0.0364 0.0956 retentiontime 0.0000 0.0000 0.0000 rank -0.2086 -0.2392 -0.2189 abs_ppm -0.1049 -0.1300 -0.1375 isotope_errors -0.9354 -0.8508 -0.7798 log10_evalue 0.2356 0.3995 0.2746 hyperscore 0.4748 0.4758 0.5202 delta_hyperscore 0.6899 0.6332 0.5904 matched_ion_num -0.7537 -0.8162 -0.6781 complementary_ions 0.0940 -0.0540 0.0027 ion_series -0.0426 0.0067 -0.0548 weighted_average_abs_fragment_ppm 0.1840 0.1205 0.0757 peptide_length 0.0000 0.0000 0.0000 ntt -0.1940 -0.1717 -0.1902 nmc 0.0000 0.0000 0.0000 charge_1 0.0249 0.0386 0.0142 charge_2 -0.0165 -0.0352 -0.0206 charge_3 -0.0488 -0.0285 0.0227 charge_4 0.0534 0.0543 0.0213 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0365 0.0349 0.0234 15.9949M 0.4865 0.5103 0.5225 unweighted_spectral_entropy -0.6213 -0.6123 -0.6601 delta_RT_loess 2.5594 2.3981 2.4105 m0 Found 58311 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 62324 target PSMs and 4496 decoy PSMs. Calculating q values. Final list yields 58313 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.08 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-10_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-10_percolator_decoy_psms.tsv S22049-Arjun-10_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-10_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-10_percolator_decoy_psms.tsv S22049-Arjun-10_edited.pin Started Wed Mar 8 11:00:13 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-10_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 57874 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 54396 positives and 3478 negatives, size ratio=15.64 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 33600 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 33592 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 33611 training set positives with q<0.01 in that direction. Found 50367 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.986 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 50914 PSMs with q<0.01 Iteration 2: Estimated 51091 PSMs with q<0.01 Iteration 3: Estimated 51151 PSMs with q<0.01 Iteration 4: Estimated 51169 PSMs with q<0.01 Iteration 5: Estimated 51155 PSMs with q<0.01 Iteration 6: Estimated 51164 PSMs with q<0.01 Iteration 7: Estimated 51171 PSMs with q<0.01 Iteration 8: Estimated 51174 PSMs with q<0.01 Iteration 9: Estimated 51174 PSMs with q<0.01 Iteration 10: Estimated 51173 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0791 0.1222 0.1347 retentiontime 0.0000 0.0000 0.0000 rank -0.2146 -0.2266 -0.2316 abs_ppm -0.1078 -0.1144 -0.1244 isotope_errors -0.5764 -0.6280 -0.5327 log10_evalue 0.8867 0.5336 0.6411 hyperscore 0.3625 0.4754 0.4053 delta_hyperscore 0.0382 0.3469 0.5097 matched_ion_num -0.4977 -0.3978 -0.5645 complementary_ions -0.1028 -0.0420 -0.1718 ion_series -0.0238 -0.0364 -0.0296 weighted_average_abs_fragment_ppm 0.1987 0.1473 0.1480 peptide_length 0.0000 0.0000 0.0000 ntt -0.1132 -0.1239 -0.0971 nmc 0.0000 0.0000 0.0000 charge_1 0.0124 -0.0114 0.0033 charge_2 -0.0147 0.0088 -0.0053 charge_3 0.0189 0.0230 0.0201 charge_4 0.0214 0.0212 -0.0093 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0226 -0.0141 -0.0134 15.9949M 0.5082 0.4731 0.4910 unweighted_spectral_entropy -0.5479 -0.5096 -0.4706 delta_RT_loess 2.1509 2.4371 2.2396 m0 Found 51171 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 54396 target PSMs and 3478 decoy PSMs. Calculating q values. Final list yields 51176 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 21.23 cpu seconds or 22 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-45_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-45_percolator_decoy_psms.tsv S22049-Arjun-45_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-45_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-45_percolator_decoy_psms.tsv S22049-Arjun-45_edited.pin Started Wed Mar 8 11:00:37 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-45_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 70930 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 66338 positives and 4592 negatives, size ratio=14.4464 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 40352 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 40721 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 40669 training set positives with q<0.01 in that direction. Found 60837 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.324 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 61828 PSMs with q<0.01 Iteration 2: Estimated 62014 PSMs with q<0.01 Iteration 3: Estimated 62110 PSMs with q<0.01 Iteration 4: Estimated 62148 PSMs with q<0.01 Iteration 5: Estimated 62163 PSMs with q<0.01 Iteration 6: Estimated 62171 PSMs with q<0.01 Iteration 7: Estimated 62174 PSMs with q<0.01 Iteration 8: Estimated 62178 PSMs with q<0.01 Iteration 9: Estimated 62182 PSMs with q<0.01 Iteration 10: Estimated 62182 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1076 0.1329 0.0344 retentiontime 0.0000 0.0000 0.0000 rank -0.2184 -0.2334 -0.2343 abs_ppm -0.1441 -0.1432 -0.1739 isotope_errors -0.5495 -0.6082 -0.6394 log10_evalue 0.6792 0.8786 0.9707 hyperscore 0.4666 0.3757 0.5497 delta_hyperscore 0.3803 0.3083 0.4477 matched_ion_num -0.6025 -0.7346 -0.8410 complementary_ions -0.0378 -0.0514 -0.0195 ion_series -0.0128 0.0167 0.0136 weighted_average_abs_fragment_ppm 0.1090 0.0445 0.1274 peptide_length 0.0000 0.0000 0.0000 ntt -0.1277 -0.1584 -0.1845 nmc 0.0000 0.0000 0.0000 charge_1 -0.0020 -0.0107 -0.0018 charge_2 0.0049 0.0049 -0.0035 charge_3 -0.0079 0.0239 0.0169 charge_4 -0.0131 -0.0070 0.0154 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0247 0.0113 -0.0324 15.9949M 0.5326 0.5492 0.5152 unweighted_spectral_entropy -0.5121 -0.5316 -0.4416 delta_RT_loess 2.3349 2.3442 2.3667 m0 Found 62170 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 66338 target PSMs and 4592 decoy PSMs. Calculating q values. Final list yields 62174 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 18.58 cpu seconds or 18 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-114_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-114_percolator_decoy_psms.tsv S22049-Arjun-114_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-114_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-114_percolator_decoy_psms.tsv S22049-Arjun-114_edited.pin Started Wed Mar 8 11:00:58 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-114_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 53669 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 50777 positives and 2892 negatives, size ratio=17.5577 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 31672 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 31639 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 31604 training set positives with q<0.01 in that direction. Found 47463 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.86 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 47955 PSMs with q<0.01 Iteration 2: Estimated 48099 PSMs with q<0.01 Iteration 3: Estimated 48176 PSMs with q<0.01 Iteration 4: Estimated 48211 PSMs with q<0.01 Iteration 5: Estimated 48225 PSMs with q<0.01 Iteration 6: Estimated 48227 PSMs with q<0.01 Iteration 7: Estimated 48230 PSMs with q<0.01 Iteration 8: Estimated 48231 PSMs with q<0.01 Iteration 9: Estimated 48232 PSMs with q<0.01 Iteration 10: Estimated 48231 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1008 0.0794 0.0952 retentiontime 0.0000 0.0000 0.0000 rank -0.1861 -0.1991 -0.1798 abs_ppm -0.1050 -0.1224 -0.1067 isotope_errors -0.7791 -0.5234 -0.6039 log10_evalue 0.3442 0.6124 0.8184 hyperscore 0.4653 0.3759 0.3977 delta_hyperscore 0.5889 0.3884 0.2191 matched_ion_num -0.6014 -0.6689 -0.6371 complementary_ions -0.2338 -0.1029 -0.1163 ion_series -0.0406 -0.0071 -0.0176 weighted_average_abs_fragment_ppm 0.1038 0.1355 0.0620 peptide_length 0.0000 0.0000 0.0000 ntt -0.1220 -0.1160 -0.1104 nmc 0.0000 0.0000 0.0000 charge_1 -0.0012 -0.0009 -0.0144 charge_2 -0.0110 -0.0043 0.0061 charge_3 0.0900 0.0393 0.0618 charge_4 -0.0178 -0.0148 -0.0122 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0401 -0.0546 -0.0661 15.9949M 0.4951 0.5034 0.4558 unweighted_spectral_entropy -0.4906 -0.4557 -0.4193 delta_RT_loess 2.3835 2.1897 2.2606 m0 Found 48233 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 50777 target PSMs and 2892 decoy PSMs. Calculating q values. Final list yields 48240 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 12.6 cpu seconds or 12 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-133_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-133_percolator_decoy_psms.tsv S22049-Arjun-133_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-133_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-133_percolator_decoy_psms.tsv S22049-Arjun-133_edited.pin Started Wed Mar 8 11:01:12 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-133_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 56895 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 52236 positives and 4659 negatives, size ratio=11.2118 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 30998 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 31175 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 31112 training set positives with q<0.01 in that direction. Found 46641 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.965 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 47519 PSMs with q<0.01 Iteration 2: Estimated 47636 PSMs with q<0.01 Iteration 3: Estimated 47705 PSMs with q<0.01 Iteration 4: Estimated 47745 PSMs with q<0.01 Iteration 5: Estimated 47778 PSMs with q<0.01 Iteration 6: Estimated 47800 PSMs with q<0.01 Iteration 7: Estimated 47816 PSMs with q<0.01 Iteration 8: Estimated 47818 PSMs with q<0.01 Iteration 9: Estimated 47822 PSMs with q<0.01 Iteration 10: Estimated 47828 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0128 -0.0605 -0.0137 retentiontime 0.0000 0.0000 0.0000 rank -0.1786 -0.1752 -0.1758 abs_ppm -0.1164 -0.1371 -0.1388 isotope_errors -0.7647 -0.7510 -0.7573 log10_evalue 0.4959 0.9354 0.4912 hyperscore 0.4438 0.4035 0.3157 delta_hyperscore 0.5032 0.8482 0.5542 matched_ion_num -0.7855 -0.9468 -0.7493 complementary_ions -0.0779 -0.1417 -0.1566 ion_series -0.0418 0.0008 -0.0503 weighted_average_abs_fragment_ppm 0.1671 0.2257 0.1667 peptide_length 0.0000 0.0000 0.0000 ntt -0.1590 -0.1632 -0.1517 nmc 0.0000 0.0000 0.0000 charge_1 0.0132 0.0217 0.0236 charge_2 -0.0064 -0.0018 -0.0114 charge_3 -0.0306 -0.0888 -0.0539 charge_4 -0.0068 -0.0060 -0.0163 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0050 0.0275 0.0112 15.9949M 0.6519 0.6361 0.6226 unweighted_spectral_entropy -0.5508 -0.5080 -0.5462 delta_RT_loess 2.1634 2.7356 2.0376 m0 Found 47788 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 52236 target PSMs and 4659 decoy PSMs. Calculating q values. Final list yields 47790 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 19.3 cpu seconds or 19 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-55_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-55_percolator_decoy_psms.tsv S22049-Arjun-55_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-55_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-55_percolator_decoy_psms.tsv S22049-Arjun-55_edited.pin Started Wed Mar 8 11:01:33 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-55_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 71147 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 66475 positives and 4672 negatives, size ratio=14.2284 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 40923 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 40867 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 40741 training set positives with q<0.01 in that direction. Found 61268 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.151 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 62174 PSMs with q<0.01 Iteration 2: Estimated 62362 PSMs with q<0.01 Iteration 3: Estimated 62460 PSMs with q<0.01 Iteration 4: Estimated 62469 PSMs with q<0.01 Iteration 5: Estimated 62468 PSMs with q<0.01 Iteration 6: Estimated 62467 PSMs with q<0.01 Iteration 7: Estimated 62475 PSMs with q<0.01 Iteration 8: Estimated 62477 PSMs with q<0.01 Iteration 9: Estimated 62474 PSMs with q<0.01 Iteration 10: Estimated 62475 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0208 -0.0299 0.0530 retentiontime 0.0000 0.0000 0.0000 rank -0.2281 -0.2099 -0.2223 abs_ppm -0.1233 -0.1368 -0.1417 isotope_errors -0.7073 -1.1418 -0.7727 log10_evalue 0.3412 0.4915 0.2291 hyperscore 0.5602 0.5110 0.6028 delta_hyperscore 0.7757 0.7511 0.8327 matched_ion_num -0.7515 -0.7129 -0.7257 complementary_ions -0.1738 -0.1125 -0.1781 ion_series -0.0301 -0.0342 -0.0715 weighted_average_abs_fragment_ppm 0.2048 0.2496 0.1525 peptide_length 0.0000 0.0000 0.0000 ntt -0.1602 -0.1293 -0.1634 nmc 0.0000 0.0000 0.0000 charge_1 0.0311 0.0345 0.0221 charge_2 -0.0262 -0.0323 -0.0169 charge_3 -0.0157 -0.0059 -0.0143 charge_4 -0.0182 -0.0201 -0.0277 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0331 -0.0435 -0.0300 15.9949M 0.5538 0.4845 0.5362 unweighted_spectral_entropy -0.4757 -0.3597 -0.4218 delta_RT_loess 2.5297 2.4310 2.6094 m0 Found 62474 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 66475 target PSMs and 4672 decoy PSMs. Calculating q values. Final list yields 62474 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.4 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-41_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-41_percolator_decoy_psms.tsv S22049-Arjun-41_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-41_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-41_percolator_decoy_psms.tsv S22049-Arjun-41_edited.pin Started Wed Mar 8 11:01:51 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-41_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 67746 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 63826 positives and 3920 negatives, size ratio=16.2821 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 39346 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 39571 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 39618 training set positives with q<0.01 in that direction. Found 59252 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.464 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 59999 PSMs with q<0.01 Iteration 2: Estimated 60194 PSMs with q<0.01 Iteration 3: Estimated 60249 PSMs with q<0.01 Iteration 4: Estimated 60272 PSMs with q<0.01 Iteration 5: Estimated 60284 PSMs with q<0.01 Iteration 6: Estimated 60282 PSMs with q<0.01 Iteration 7: Estimated 60284 PSMs with q<0.01 Iteration 8: Estimated 60285 PSMs with q<0.01 Iteration 9: Estimated 60283 PSMs with q<0.01 Iteration 10: Estimated 60285 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0590 0.0353 0.0484 retentiontime 0.0000 0.0000 0.0000 rank -0.2049 -0.1718 -0.1889 abs_ppm -0.1203 -0.1238 -0.1011 isotope_errors -0.8013 -0.5188 -0.4563 log10_evalue 0.6616 0.5296 0.7514 hyperscore 0.3982 0.5466 0.6086 delta_hyperscore 0.6986 0.7174 0.5700 matched_ion_num -0.8230 -0.7482 -0.7420 complementary_ions -0.3719 -0.1983 -0.2443 ion_series -0.0299 -0.0441 -0.0192 weighted_average_abs_fragment_ppm 0.0088 0.0862 0.1070 peptide_length 0.0000 0.0000 0.0000 ntt -0.1370 -0.1486 -0.1130 nmc 0.0000 0.0000 0.0000 charge_1 0.0195 0.0254 0.0383 charge_2 -0.0164 -0.0212 -0.0329 charge_3 -0.0328 -0.0334 -0.0380 charge_4 0.1004 0.0821 0.0796 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0164 -0.0150 -0.0142 15.9949M 0.4811 0.4882 0.5466 unweighted_spectral_entropy -0.5842 -0.5093 -0.5510 delta_RT_loess 2.3571 2.3342 2.3793 m0 Found 60287 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 63826 target PSMs and 3920 decoy PSMs. Calculating q values. Final list yields 60287 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 22.56 cpu seconds or 23 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-106_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-106_percolator_decoy_psms.tsv S22049-Arjun-106_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-106_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-106_percolator_decoy_psms.tsv S22049-Arjun-106_edited.pin Started Wed Mar 8 11:02:16 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-106_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 65049 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 61120 positives and 3929 negatives, size ratio=15.5561 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 37483 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 37693 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 37667 training set positives with q<0.01 in that direction. Found 56407 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.123 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 57098 PSMs with q<0.01 Iteration 2: Estimated 57249 PSMs with q<0.01 Iteration 3: Estimated 57361 PSMs with q<0.01 Iteration 4: Estimated 57402 PSMs with q<0.01 Iteration 5: Estimated 57403 PSMs with q<0.01 Iteration 6: Estimated 57412 PSMs with q<0.01 Iteration 7: Estimated 57419 PSMs with q<0.01 Iteration 8: Estimated 57417 PSMs with q<0.01 Iteration 9: Estimated 57418 PSMs with q<0.01 Iteration 10: Estimated 57420 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0058 -0.0229 0.0635 retentiontime 0.0000 0.0000 0.0000 rank -0.1987 -0.1710 -0.1698 abs_ppm -0.1022 -0.0709 -0.0390 isotope_errors -0.5368 -0.7467 -0.4323 log10_evalue 0.6677 0.3955 0.7903 hyperscore 0.4306 0.5453 0.7870 delta_hyperscore 0.7792 0.7251 0.6713 matched_ion_num -0.7299 -0.6165 -0.4676 complementary_ions -0.1329 -0.1385 -0.1367 ion_series 0.0002 -0.0002 -0.0119 weighted_average_abs_fragment_ppm 0.1664 0.1630 0.0262 peptide_length 0.0000 0.0000 0.0000 ntt -0.1633 -0.1565 -0.1389 nmc 0.0000 0.0000 0.0000 charge_1 0.0063 0.0103 -0.0365 charge_2 0.0007 -0.0213 0.0141 charge_3 -0.0114 0.0042 0.0599 charge_4 -0.0233 0.0783 0.0170 charge_5 -0.0138 -0.0137 -0.0018 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0535 0.0895 0.0720 15.9949M 0.5040 0.5149 0.4938 unweighted_spectral_entropy -0.5096 -0.5137 -0.4194 delta_RT_loess 2.4530 2.5383 2.1791 m0 Found 57409 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 61120 target PSMs and 3929 decoy PSMs. Calculating q values. Final list yields 57410 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 18.54 cpu seconds or 19 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-62-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-62-2nd_percolator_decoy_psms.tsv S22049-Arjun-62-2nd_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-62-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-62-2nd_percolator_decoy_psms.tsv S22049-Arjun-62-2nd_edited.pin Started Wed Mar 8 11:02:37 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-62-2nd_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 75354 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 70127 positives and 5227 negatives, size ratio=13.4163 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 42470 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 42605 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 42644 training set positives with q<0.01 in that direction. Found 63840 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.635 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 65067 PSMs with q<0.01 Iteration 2: Estimated 65319 PSMs with q<0.01 Iteration 3: Estimated 65445 PSMs with q<0.01 Iteration 4: Estimated 65472 PSMs with q<0.01 Iteration 5: Estimated 65486 PSMs with q<0.01 Iteration 6: Estimated 65487 PSMs with q<0.01 Iteration 7: Estimated 65489 PSMs with q<0.01 Iteration 8: Estimated 65489 PSMs with q<0.01 Iteration 9: Estimated 65490 PSMs with q<0.01 Iteration 10: Estimated 65489 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0131 0.0503 0.0640 retentiontime 0.0000 0.0000 0.0000 rank -0.2389 -0.2330 -0.2409 abs_ppm -0.1278 -0.1508 -0.1134 isotope_errors -0.6626 -0.6769 -0.7543 log10_evalue 1.1507 0.8621 0.9783 hyperscore 0.5102 0.4886 0.4011 delta_hyperscore 0.5388 0.5755 0.5626 matched_ion_num -1.0817 -0.9856 -0.9597 complementary_ions -0.1565 -0.0272 -0.1200 ion_series -0.0009 0.0026 -0.0073 weighted_average_abs_fragment_ppm 0.1444 0.1172 0.0953 peptide_length 0.0000 0.0000 0.0000 ntt -0.2063 -0.1868 -0.1827 nmc 0.0000 0.0000 0.0000 charge_1 0.0244 0.0162 -0.0035 charge_2 -0.0162 -0.0200 -0.0038 charge_3 -0.0299 0.0106 0.0237 charge_4 0.0017 0.0032 0.0046 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0521 -0.0518 -0.0530 15.9949M 0.5099 0.5015 0.5589 unweighted_spectral_entropy -0.5527 -0.5287 -0.5635 delta_RT_loess 2.6903 2.5951 2.6876 m0 Found 65501 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 70127 target PSMs and 5227 decoy PSMs. Calculating q values. Final list yields 65504 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 20.2 cpu seconds or 21 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-130_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-130_percolator_decoy_psms.tsv S22049-Arjun-130_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-130_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-130_percolator_decoy_psms.tsv S22049-Arjun-130_edited.pin Started Wed Mar 8 11:03:00 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-130_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 61663 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 57922 positives and 3741 negatives, size ratio=15.483 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 35620 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 35575 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 35659 training set positives with q<0.01 in that direction. Found 53423 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.128 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 54249 PSMs with q<0.01 Iteration 2: Estimated 54478 PSMs with q<0.01 Iteration 3: Estimated 54551 PSMs with q<0.01 Iteration 4: Estimated 54577 PSMs with q<0.01 Iteration 5: Estimated 54581 PSMs with q<0.01 Iteration 6: Estimated 54580 PSMs with q<0.01 Iteration 7: Estimated 54580 PSMs with q<0.01 Iteration 8: Estimated 54588 PSMs with q<0.01 Iteration 9: Estimated 54587 PSMs with q<0.01 Iteration 10: Estimated 54588 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0101 -0.0268 -0.0863 retentiontime 0.0000 0.0000 0.0000 rank -0.2369 -0.1870 -0.1805 abs_ppm -0.1010 -0.1038 -0.0988 isotope_errors -0.8713 -0.7256 -0.6398 log10_evalue 0.3931 0.4142 0.5511 hyperscore 0.3192 0.4281 0.3405 delta_hyperscore 0.5064 0.5332 0.6060 matched_ion_num -0.7104 -0.7712 -0.7223 complementary_ions -0.0526 -0.0299 -0.1213 ion_series 0.0077 -0.0002 0.0096 weighted_average_abs_fragment_ppm 0.1922 0.2066 0.2796 peptide_length 0.0000 0.0000 0.0000 ntt -0.1614 -0.1235 -0.1997 nmc 0.0000 0.0000 0.0000 charge_1 0.0302 0.0447 0.0235 charge_2 -0.0153 -0.0231 -0.0138 charge_3 -0.0680 -0.0902 -0.0378 charge_4 0.0287 -0.0031 -0.0172 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0189 -0.0276 -0.0218 15.9949M 0.5114 0.5287 0.4862 unweighted_spectral_entropy -0.6263 -0.6005 -0.6107 delta_RT_loess 2.3745 2.3290 2.3272 m0 Found 54583 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 57922 target PSMs and 3741 decoy PSMs. Calculating q values. Final list yields 54583 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.51 cpu seconds or 13 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-107_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-107_percolator_decoy_psms.tsv S22049-Arjun-107_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-107_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-107_percolator_decoy_psms.tsv S22049-Arjun-107_edited.pin Started Wed Mar 8 11:03:15 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-107_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 52137 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 48694 positives and 3443 negatives, size ratio=14.1429 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 29755 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 29688 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 29810 training set positives with q<0.01 in that direction. Found 44627 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.863 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 45238 PSMs with q<0.01 Iteration 2: Estimated 45400 PSMs with q<0.01 Iteration 3: Estimated 45491 PSMs with q<0.01 Iteration 4: Estimated 45521 PSMs with q<0.01 Iteration 5: Estimated 45530 PSMs with q<0.01 Iteration 6: Estimated 45530 PSMs with q<0.01 Iteration 7: Estimated 45533 PSMs with q<0.01 Iteration 8: Estimated 45534 PSMs with q<0.01 Iteration 9: Estimated 45534 PSMs with q<0.01 Iteration 10: Estimated 45534 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0456 0.0350 0.0832 retentiontime 0.0000 0.0000 0.0000 rank -0.2141 -0.2140 -0.1869 abs_ppm -0.1010 -0.1174 -0.0964 isotope_errors -0.5480 -0.6642 -0.8197 log10_evalue 0.6092 0.6472 0.7776 hyperscore 0.5082 0.3551 0.4165 delta_hyperscore 0.9189 0.5868 0.6082 matched_ion_num -0.6659 -0.6226 -0.8755 complementary_ions -0.2537 -0.2247 -0.2637 ion_series -0.0056 0.0203 -0.0277 weighted_average_abs_fragment_ppm 0.2325 0.1588 0.0747 peptide_length 0.0000 0.0000 0.0000 ntt -0.1174 -0.1192 -0.0764 nmc 0.0000 0.0000 0.0000 charge_1 -0.0079 0.0198 -0.0310 charge_2 -0.0133 -0.0151 0.0330 charge_3 0.0994 -0.0270 -0.0127 charge_4 -0.0136 0.0275 0.0354 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0422 0.0399 0.0283 15.9949M 0.5613 0.5531 0.6440 unweighted_spectral_entropy -0.5289 -0.5113 -0.4560 delta_RT_loess 2.3773 2.3688 2.3097 m0 Found 45529 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 48694 target PSMs and 3443 decoy PSMs. Calculating q values. Final list yields 45531 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 12.13 cpu seconds or 12 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-68_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-68_percolator_decoy_psms.tsv S22049-Arjun-68_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-68_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-68_percolator_decoy_psms.tsv S22049-Arjun-68_edited.pin Started Wed Mar 8 11:03:29 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-68_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 77377 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 72086 positives and 5291 negatives, size ratio=13.6243 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 43882 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 43834 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 43859 training set positives with q<0.01 in that direction. Found 65785 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.301 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 67112 PSMs with q<0.01 Iteration 2: Estimated 67347 PSMs with q<0.01 Iteration 3: Estimated 67421 PSMs with q<0.01 Iteration 4: Estimated 67435 PSMs with q<0.01 Iteration 5: Estimated 67441 PSMs with q<0.01 Iteration 6: Estimated 67438 PSMs with q<0.01 Iteration 7: Estimated 67440 PSMs with q<0.01 Iteration 8: Estimated 67439 PSMs with q<0.01 Iteration 9: Estimated 67439 PSMs with q<0.01 Iteration 10: Estimated 67435 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0591 0.0889 0.1286 retentiontime 0.0000 0.0000 0.0000 rank -0.2134 -0.2427 -0.2160 abs_ppm -0.1256 -0.1362 -0.1530 isotope_errors -0.6968 -0.9609 -0.3024 log10_evalue 1.3014 0.9172 1.6327 hyperscore 0.5999 0.5473 0.4965 delta_hyperscore 0.2946 0.6171 -0.0248 matched_ion_num -0.8658 -1.0337 -0.7814 complementary_ions -0.2269 -0.2477 0.1223 ion_series -0.0530 -0.0286 0.0042 weighted_average_abs_fragment_ppm 0.1168 0.0860 0.0723 peptide_length 0.0000 0.0000 0.0000 ntt -0.1494 -0.1531 -0.1754 nmc 0.0000 0.0000 0.0000 charge_1 -0.0110 0.0069 -0.0491 charge_2 -0.0044 -0.0120 0.0400 charge_3 0.0489 0.0135 0.0262 charge_4 -0.0081 0.0042 0.0129 charge_5 -0.0209 -0.0111 -0.0021 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0699 -0.0282 -0.0556 15.9949M 0.5502 0.5666 0.4869 unweighted_spectral_entropy -0.5235 -0.5882 -0.5059 delta_RT_loess 2.5424 2.8858 2.1021 m0 Found 67435 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 72086 target PSMs and 5291 decoy PSMs. Calculating q values. Final list yields 67438 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 19.1 cpu seconds or 19 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-14_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-14_percolator_decoy_psms.tsv S22049-Arjun-14_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-14_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-14_percolator_decoy_psms.tsv S22049-Arjun-14_edited.pin Started Wed Mar 8 11:03:51 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-14_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 61276 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 57029 positives and 4247 negatives, size ratio=13.4281 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 34301 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 34261 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 34287 training set positives with q<0.01 in that direction. Found 51421 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.275 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 52768 PSMs with q<0.01 Iteration 2: Estimated 53028 PSMs with q<0.01 Iteration 3: Estimated 53133 PSMs with q<0.01 Iteration 4: Estimated 53147 PSMs with q<0.01 Iteration 5: Estimated 53145 PSMs with q<0.01 Iteration 6: Estimated 53146 PSMs with q<0.01 Iteration 7: Estimated 53150 PSMs with q<0.01 Iteration 8: Estimated 53150 PSMs with q<0.01 Iteration 9: Estimated 53152 PSMs with q<0.01 Iteration 10: Estimated 53152 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0089 0.0373 0.0628 retentiontime 0.0000 0.0000 0.0000 rank -0.2294 -0.1809 -0.2040 abs_ppm -0.1106 -0.0843 -0.0776 isotope_errors -0.7222 -0.7556 -0.7114 log10_evalue 0.4408 0.6065 0.5419 hyperscore 0.4728 0.4015 0.5016 delta_hyperscore 0.2963 0.5373 0.4713 matched_ion_num -0.5632 -0.5713 -0.5135 complementary_ions 0.1431 -0.0610 -0.0423 ion_series -0.0245 0.0115 -0.0031 weighted_average_abs_fragment_ppm 0.1925 0.1596 0.1148 peptide_length 0.0000 0.0000 0.0000 ntt -0.1121 -0.1231 -0.0724 nmc 0.0000 0.0000 0.0000 charge_1 0.0267 -0.0277 0.0092 charge_2 -0.0229 0.0105 -0.0031 charge_3 -0.0205 0.1018 -0.0367 charge_4 -0.0226 0.0028 0.0060 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0414 -0.0739 -0.0444 15.9949M 0.4630 0.4602 0.4552 unweighted_spectral_entropy -0.6443 -0.5181 -0.5401 delta_RT_loess 2.2811 2.1746 2.0827 m0 Found 53135 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 57029 target PSMs and 4247 decoy PSMs. Calculating q values. Final list yields 53135 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 18.84 cpu seconds or 19 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-144_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-144_percolator_decoy_psms.tsv S22049-Arjun-144_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-144_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-144_percolator_decoy_psms.tsv S22049-Arjun-144_edited.pin Started Wed Mar 8 11:04:12 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-144_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 48644 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 45345 positives and 3299 negatives, size ratio=13.7451 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 27657 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 27681 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 27663 training set positives with q<0.01 in that direction. Found 41501 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.802 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 42045 PSMs with q<0.01 Iteration 2: Estimated 42148 PSMs with q<0.01 Iteration 3: Estimated 42231 PSMs with q<0.01 Iteration 4: Estimated 42275 PSMs with q<0.01 Iteration 5: Estimated 42280 PSMs with q<0.01 Iteration 6: Estimated 42281 PSMs with q<0.01 Iteration 7: Estimated 42282 PSMs with q<0.01 Iteration 8: Estimated 42284 PSMs with q<0.01 Iteration 9: Estimated 42284 PSMs with q<0.01 Iteration 10: Estimated 42285 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0712 0.0343 0.0491 retentiontime 0.0000 0.0000 0.0000 rank -0.1921 -0.1969 -0.1829 abs_ppm -0.1333 -0.1473 -0.1460 isotope_errors -0.6311 -0.8800 -0.6539 log10_evalue 0.2960 0.1416 0.1191 hyperscore 0.5294 0.5435 0.4727 delta_hyperscore 0.5193 0.7583 0.6960 matched_ion_num -0.6200 -0.8642 -0.6473 complementary_ions -0.0296 -0.0277 -0.1095 ion_series -0.0252 -0.0368 -0.0513 weighted_average_abs_fragment_ppm 0.1761 0.1845 0.1479 peptide_length 0.0000 0.0000 0.0000 ntt -0.0911 -0.1060 -0.0800 nmc 0.0000 0.0000 0.0000 charge_1 0.0099 0.0208 0.0064 charge_2 -0.0274 -0.0281 -0.0134 charge_3 0.1228 0.0573 0.0464 charge_4 0.0197 -0.0255 0.0197 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0266 -0.0116 0.0010 15.9949M 0.5844 0.6348 0.6023 unweighted_spectral_entropy -0.4176 -0.4021 -0.3910 delta_RT_loess 2.2257 2.5136 2.1165 m0 Found 42273 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 45345 target PSMs and 3299 decoy PSMs. Calculating q values. Final list yields 42274 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 11.22 cpu seconds or 11 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-8_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-8_percolator_decoy_psms.tsv S22049-Arjun-8_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-8_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-8_percolator_decoy_psms.tsv S22049-Arjun-8_edited.pin Started Wed Mar 8 11:04:25 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-8_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 73842 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 68521 positives and 5321 negatives, size ratio=12.8775 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 41253 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 41310 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 41206 training set positives with q<0.01 in that direction. Found 61854 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.328 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 63329 PSMs with q<0.01 Iteration 2: Estimated 63620 PSMs with q<0.01 Iteration 3: Estimated 63729 PSMs with q<0.01 Iteration 4: Estimated 63750 PSMs with q<0.01 Iteration 5: Estimated 63752 PSMs with q<0.01 Iteration 6: Estimated 63754 PSMs with q<0.01 Iteration 7: Estimated 63755 PSMs with q<0.01 Iteration 8: Estimated 63756 PSMs with q<0.01 Iteration 9: Estimated 63757 PSMs with q<0.01 Iteration 10: Estimated 63754 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.1444 -0.0515 -0.0582 retentiontime 0.0000 0.0000 0.0000 rank -0.2263 -0.2063 -0.2025 abs_ppm -0.0961 -0.1228 -0.0942 isotope_errors -0.5456 -0.6647 -0.7332 log10_evalue 0.7384 0.8711 0.9515 hyperscore 0.7158 0.6381 0.5784 delta_hyperscore 0.8268 0.5173 0.6475 matched_ion_num -0.9801 -0.9243 -0.9512 complementary_ions 0.0739 -0.0675 -0.1327 ion_series -0.0120 0.0207 -0.0008 weighted_average_abs_fragment_ppm 0.2391 0.0926 0.1482 peptide_length 0.0000 0.0000 0.0000 ntt -0.1800 -0.1545 -0.2025 nmc 0.0000 0.0000 0.0000 charge_1 0.0157 0.0049 0.0125 charge_2 -0.0061 -0.0153 -0.0121 charge_3 -0.0417 0.0333 -0.0160 charge_4 0.0259 0.0145 0.0558 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0145 -0.0307 -0.0442 15.9949M 0.5172 0.5368 0.5019 unweighted_spectral_entropy -0.4992 -0.6507 -0.5580 delta_RT_loess 2.2111 2.6053 2.4025 m0 Found 63755 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 68521 target PSMs and 5321 decoy PSMs. Calculating q values. Final list yields 63756 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 24.25 cpu seconds or 24 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-99_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-99_percolator_decoy_psms.tsv S22049-Arjun-99_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-99_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-99_percolator_decoy_psms.tsv S22049-Arjun-99_edited.pin Started Wed Mar 8 11:04:52 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-99_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 55502 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 52126 positives and 3376 negatives, size ratio=15.4402 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 32085 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 32168 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 32146 training set positives with q<0.01 in that direction. Found 48241 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.884 cpu seconds or 0 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 48727 PSMs with q<0.01 Iteration 2: Estimated 48826 PSMs with q<0.01 Iteration 3: Estimated 48882 PSMs with q<0.01 Iteration 4: Estimated 48920 PSMs with q<0.01 Iteration 5: Estimated 48942 PSMs with q<0.01 Iteration 6: Estimated 48946 PSMs with q<0.01 Iteration 7: Estimated 48947 PSMs with q<0.01 Iteration 8: Estimated 48945 PSMs with q<0.01 Iteration 9: Estimated 48945 PSMs with q<0.01 Iteration 10: Estimated 48944 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1282 0.1389 0.0753 retentiontime 0.0000 0.0000 0.0000 rank -0.2109 -0.1828 -0.1936 abs_ppm -0.0692 -0.0524 -0.0928 isotope_errors -0.5637 -0.5018 -0.6818 log10_evalue 0.0955 -0.0460 -0.0169 hyperscore 0.6440 0.5119 0.3942 delta_hyperscore 0.9337 0.7169 0.9715 matched_ion_num -0.6187 -0.4335 -0.6854 complementary_ions 0.0085 -0.0005 -0.1157 ion_series 0.0124 -0.0003 -0.0157 weighted_average_abs_fragment_ppm 0.0407 0.0228 0.1285 peptide_length 0.0000 0.0000 0.0000 ntt -0.0822 -0.1085 -0.1083 nmc 0.0000 0.0000 0.0000 charge_1 -0.0128 -0.0076 0.0137 charge_2 0.0031 -0.0067 -0.0448 charge_3 0.0131 0.0321 0.0804 charge_4 0.0611 0.0412 0.0423 charge_5 -0.0107 -0.0088 -0.0094 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0494 0.0010 0.0047 15.9949M 0.5453 0.5061 0.5397 unweighted_spectral_entropy -0.5154 -0.4269 -0.4791 delta_RT_loess 2.5232 2.0688 2.2228 m0 Found 48919 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 52126 target PSMs and 3376 decoy PSMs. Calculating q values. Final list yields 48922 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 12.7 cpu seconds or 13 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-18_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-18_percolator_decoy_psms.tsv S22049-Arjun-18_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-18_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-18_percolator_decoy_psms.tsv S22049-Arjun-18_edited.pin Started Wed Mar 8 11:05:06 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-18_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 66349 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 60995 positives and 5354 negatives, size ratio=11.3924 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 35723 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 35824 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 35751 training set positives with q<0.01 in that direction. Found 53628 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.102 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55421 PSMs with q<0.01 Iteration 2: Estimated 55714 PSMs with q<0.01 Iteration 3: Estimated 55822 PSMs with q<0.01 Iteration 4: Estimated 55872 PSMs with q<0.01 Iteration 5: Estimated 55900 PSMs with q<0.01 Iteration 6: Estimated 55920 PSMs with q<0.01 Iteration 7: Estimated 55916 PSMs with q<0.01 Iteration 8: Estimated 55918 PSMs with q<0.01 Iteration 9: Estimated 55920 PSMs with q<0.01 Iteration 10: Estimated 55915 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0564 0.0112 0.0538 retentiontime 0.0000 0.0000 0.0000 rank -0.2714 -0.2845 -0.2915 abs_ppm -0.1216 -0.1401 -0.1129 isotope_errors -0.4917 -0.8605 -0.7021 log10_evalue 0.6736 0.1866 0.3144 hyperscore 0.5581 0.6202 0.5894 delta_hyperscore 0.6368 0.5112 0.9077 matched_ion_num -0.8778 -0.7573 -0.7841 complementary_ions 0.0516 0.0456 0.0191 ion_series -0.0400 -0.0494 -0.0446 weighted_average_abs_fragment_ppm 0.2082 0.2045 0.2062 peptide_length 0.0000 0.0000 0.0000 ntt -0.1475 -0.1659 -0.1764 nmc 0.0000 0.0000 0.0000 charge_1 0.0269 0.0485 0.0182 charge_2 -0.0202 -0.0391 -0.0145 charge_3 -0.0388 -0.0559 -0.0213 charge_4 -0.0065 -0.0037 -0.0051 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0089 -0.0185 -0.0463 15.9949M 0.6075 0.6043 0.5278 unweighted_spectral_entropy -0.8064 -0.6988 -0.7148 delta_RT_loess 2.3661 2.3070 2.5121 m0 Found 55893 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 60995 target PSMs and 5354 decoy PSMs. Calculating q values. Final list yields 55894 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.21 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-95_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-95_percolator_decoy_psms.tsv S22049-Arjun-95_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-95_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-95_percolator_decoy_psms.tsv S22049-Arjun-95_edited.pin Started Wed Mar 8 11:05:23 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-95_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 64444 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 60661 positives and 3783 negatives, size ratio=16.0352 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 37368 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 37572 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 37525 training set positives with q<0.01 in that direction. Found 56223 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.024 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 56923 PSMs with q<0.01 Iteration 2: Estimated 57110 PSMs with q<0.01 Iteration 3: Estimated 57174 PSMs with q<0.01 Iteration 4: Estimated 57185 PSMs with q<0.01 Iteration 5: Estimated 57181 PSMs with q<0.01 Iteration 6: Estimated 57183 PSMs with q<0.01 Iteration 7: Estimated 57183 PSMs with q<0.01 Iteration 8: Estimated 57184 PSMs with q<0.01 Iteration 9: Estimated 57184 PSMs with q<0.01 Iteration 10: Estimated 57185 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0006 0.0448 0.0563 retentiontime 0.0000 0.0000 0.0000 rank -0.1494 -0.1682 -0.1857 abs_ppm -0.1161 -0.1294 -0.0975 isotope_errors -0.6892 -0.3694 -0.0804 log10_evalue 0.8427 0.7452 0.9127 hyperscore 0.4947 0.5306 0.7140 delta_hyperscore 0.3520 0.4645 0.6190 matched_ion_num -0.7613 -0.6823 -0.8862 complementary_ions -0.1111 -0.0158 -0.0045 ion_series -0.0704 -0.0439 -0.0590 weighted_average_abs_fragment_ppm 0.1203 0.1784 0.2272 peptide_length 0.0000 0.0000 0.0000 ntt -0.2009 -0.1754 -0.1551 nmc 0.0000 0.0000 0.0000 charge_1 -0.0386 0.0070 0.0047 charge_2 0.0087 -0.0322 -0.0195 charge_3 0.0764 0.0698 0.0349 charge_4 0.0728 0.0288 0.0403 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0661 -0.0324 -0.0214 15.9949M 0.5737 0.5094 0.6487 unweighted_spectral_entropy -0.5583 -0.5571 -0.5704 delta_RT_loess 2.3145 2.4382 1.9949 m0 Found 57195 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 60661 target PSMs and 3783 decoy PSMs. Calculating q values. Final list yields 57196 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.6 cpu seconds or 13 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-117_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-117_percolator_decoy_psms.tsv S22049-Arjun-117_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-117_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-117_percolator_decoy_psms.tsv S22049-Arjun-117_edited.pin Started Wed Mar 8 11:05:38 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-117_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 56880 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 53555 positives and 3325 negatives, size ratio=16.1068 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 33027 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 33033 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 33025 training set positives with q<0.01 in that direction. Found 49540 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.896 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 50238 PSMs with q<0.01 Iteration 2: Estimated 50429 PSMs with q<0.01 Iteration 3: Estimated 50456 PSMs with q<0.01 Iteration 4: Estimated 50467 PSMs with q<0.01 Iteration 5: Estimated 50462 PSMs with q<0.01 Iteration 6: Estimated 50473 PSMs with q<0.01 Iteration 7: Estimated 50476 PSMs with q<0.01 Iteration 8: Estimated 50474 PSMs with q<0.01 Iteration 9: Estimated 50479 PSMs with q<0.01 Iteration 10: Estimated 50477 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1221 0.0281 0.0038 retentiontime 0.0000 0.0000 0.0000 rank -0.1812 -0.1826 -0.1541 abs_ppm -0.0487 -0.0562 -0.0633 isotope_errors -0.5049 -0.4220 -0.5112 log10_evalue 1.0302 0.8971 0.8000 hyperscore 0.4686 0.4753 0.5239 delta_hyperscore 0.2604 0.3807 0.6355 matched_ion_num -0.5191 -0.6917 -0.7363 complementary_ions -0.1029 0.0253 -0.1027 ion_series 0.0040 0.0026 -0.0214 weighted_average_abs_fragment_ppm 0.0039 0.1117 0.1518 peptide_length 0.0000 0.0000 0.0000 ntt -0.0959 -0.0915 -0.1118 nmc 0.0000 0.0000 0.0000 charge_1 -0.0144 -0.0051 0.0078 charge_2 0.0070 0.0095 -0.0071 charge_3 0.0327 -0.0184 -0.0044 charge_4 0.0135 -0.0098 0.0074 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0158 -0.0418 -0.0579 15.9949M 0.5147 0.4522 0.4606 unweighted_spectral_entropy -0.6484 -0.5312 -0.6263 delta_RT_loess 1.8846 2.0500 2.2409 m0 Found 50457 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 53555 target PSMs and 3325 decoy PSMs. Calculating q values. Final list yields 50465 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 12.93 cpu seconds or 13 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-91_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-91_percolator_decoy_psms.tsv S22049-Arjun-91_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-91_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-91_percolator_decoy_psms.tsv S22049-Arjun-91_edited.pin Started Wed Mar 8 11:05:53 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-91_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 64567 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 60704 positives and 3863 negatives, size ratio=15.7142 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 37295 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 37412 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 37531 training set positives with q<0.01 in that direction. Found 56108 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.045 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 56950 PSMs with q<0.01 Iteration 2: Estimated 57134 PSMs with q<0.01 Iteration 3: Estimated 57152 PSMs with q<0.01 Iteration 4: Estimated 57152 PSMs with q<0.01 Iteration 5: Estimated 57155 PSMs with q<0.01 Iteration 6: Estimated 57157 PSMs with q<0.01 Iteration 7: Estimated 57157 PSMs with q<0.01 Iteration 8: Estimated 57157 PSMs with q<0.01 Iteration 9: Estimated 57157 PSMs with q<0.01 Iteration 10: Estimated 57157 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0019 0.0759 -0.0213 retentiontime 0.0000 0.0000 0.0000 rank -0.1665 -0.1856 -0.1771 abs_ppm -0.0975 -0.1115 -0.0782 isotope_errors -0.7182 -0.5018 -0.5953 log10_evalue 0.8383 0.5375 0.7139 hyperscore 0.3853 0.4026 0.4177 delta_hyperscore 0.2516 0.5015 0.5193 matched_ion_num -0.7608 -0.7871 -0.7485 complementary_ions 0.1053 0.0099 0.2475 ion_series -0.0264 -0.0310 -0.0220 weighted_average_abs_fragment_ppm 0.2179 0.1314 0.2405 peptide_length 0.0000 0.0000 0.0000 ntt -0.1383 -0.1481 -0.1547 nmc 0.0000 0.0000 0.0000 charge_1 0.0104 0.0107 -0.0166 charge_2 -0.0188 -0.0123 0.0121 charge_3 -0.0017 -0.0199 -0.0097 charge_4 0.0841 0.0781 0.0794 charge_5 -0.0123 -0.0114 -0.0103 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0441 -0.0318 -0.0226 15.9949M 0.5053 0.5597 0.4492 unweighted_spectral_entropy -0.5268 -0.5345 -0.5407 delta_RT_loess 2.2177 2.2370 2.0817 m0 Found 57162 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 60704 target PSMs and 3863 decoy PSMs. Calculating q values. Final list yields 57163 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.31 cpu seconds or 15 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-86_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-86_percolator_decoy_psms.tsv S22049-Arjun-86_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-86_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-86_percolator_decoy_psms.tsv S22049-Arjun-86_edited.pin Started Wed Mar 8 11:06:10 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-86_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 64045 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 59952 positives and 4093 negatives, size ratio=14.6474 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36635 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36975 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36885 training set positives with q<0.01 in that direction. Found 55220 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.022 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55970 PSMs with q<0.01 Iteration 2: Estimated 56120 PSMs with q<0.01 Iteration 3: Estimated 56200 PSMs with q<0.01 Iteration 4: Estimated 56229 PSMs with q<0.01 Iteration 5: Estimated 56237 PSMs with q<0.01 Iteration 6: Estimated 56240 PSMs with q<0.01 Iteration 7: Estimated 56240 PSMs with q<0.01 Iteration 8: Estimated 56240 PSMs with q<0.01 Iteration 9: Estimated 56239 PSMs with q<0.01 Iteration 10: Estimated 56239 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0645 0.0273 0.0884 retentiontime 0.0000 0.0000 0.0000 rank -0.2285 -0.2197 -0.2288 abs_ppm -0.1213 -0.1376 -0.1288 isotope_errors -0.7403 -0.5047 -0.6938 log10_evalue 0.7834 0.5374 0.7364 hyperscore 0.4132 0.5078 0.5489 delta_hyperscore 0.2437 0.1444 0.5220 matched_ion_num -0.9047 -0.6376 -0.9007 complementary_ions 0.1576 0.1494 0.0739 ion_series 0.0235 -0.0055 0.0281 weighted_average_abs_fragment_ppm 0.1433 0.2095 0.0895 peptide_length 0.0000 0.0000 0.0000 ntt -0.1242 -0.1599 -0.1178 nmc 0.0000 0.0000 0.0000 charge_1 0.0344 0.0336 0.0259 charge_2 -0.0275 -0.0307 -0.0335 charge_3 -0.0308 -0.0085 0.0236 charge_4 0.0176 -0.0141 -0.0007 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0249 -0.0324 -0.0256 15.9949M 0.5430 0.5392 0.4870 unweighted_spectral_entropy -0.5318 -0.4979 -0.4491 delta_RT_loess 2.4642 2.2065 2.3853 m0 Found 56236 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 59952 target PSMs and 4093 decoy PSMs. Calculating q values. Final list yields 56237 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.94 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-32_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-32_percolator_decoy_psms.tsv S22049-Arjun-32_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-32_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-32_percolator_decoy_psms.tsv S22049-Arjun-32_edited.pin Started Wed Mar 8 11:06:26 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-32_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 62806 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 57350 positives and 5456 negatives, size ratio=10.5114 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 33752 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 33950 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 33874 training set positives with q<0.01 in that direction. Found 50769 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.428 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 51850 PSMs with q<0.01 Iteration 2: Estimated 52047 PSMs with q<0.01 Iteration 3: Estimated 52138 PSMs with q<0.01 Iteration 4: Estimated 52171 PSMs with q<0.01 Iteration 5: Estimated 52179 PSMs with q<0.01 Iteration 6: Estimated 52185 PSMs with q<0.01 Iteration 7: Estimated 52190 PSMs with q<0.01 Iteration 8: Estimated 52188 PSMs with q<0.01 Iteration 9: Estimated 52191 PSMs with q<0.01 Iteration 10: Estimated 52191 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0460 0.1172 0.0533 retentiontime 0.0000 0.0000 0.0000 rank -0.2204 -0.2240 -0.2213 abs_ppm -0.1624 -0.1913 -0.1467 isotope_errors -0.6172 -0.7126 -0.5234 log10_evalue 0.4231 0.2076 0.3191 hyperscore 0.5444 0.4858 0.5392 delta_hyperscore 0.5825 1.0330 1.0222 matched_ion_num -0.8132 -0.8041 -0.8374 complementary_ions 0.0621 -0.1530 -0.1349 ion_series 0.0128 -0.0091 -0.0245 weighted_average_abs_fragment_ppm 0.0902 0.0974 0.1481 peptide_length 0.0000 0.0000 0.0000 ntt -0.1293 -0.1220 -0.1535 nmc 0.0000 0.0000 0.0000 charge_1 -0.0167 0.0058 -0.0133 charge_2 0.0115 -0.0037 0.0110 charge_3 0.0207 -0.0133 0.0084 charge_4 0.0251 0.0223 0.0163 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0103 -0.0235 -0.0028 15.9949M 0.6333 0.6450 0.6640 unweighted_spectral_entropy -0.6744 -0.6951 -0.6861 delta_RT_loess 2.1563 2.3175 2.2307 m0 Found 52167 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 57350 target PSMs and 5456 decoy PSMs. Calculating q values. Final list yields 52168 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.91 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-141_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-141_percolator_decoy_psms.tsv S22049-Arjun-141_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-141_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-141_percolator_decoy_psms.tsv S22049-Arjun-141_edited.pin Started Wed Mar 8 11:06:43 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-141_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 64070 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 59945 positives and 4125 negatives, size ratio=14.5321 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36543 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36816 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36633 training set positives with q<0.01 in that direction. Found 54930 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.132 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55907 PSMs with q<0.01 Iteration 2: Estimated 56117 PSMs with q<0.01 Iteration 3: Estimated 56195 PSMs with q<0.01 Iteration 4: Estimated 56223 PSMs with q<0.01 Iteration 5: Estimated 56237 PSMs with q<0.01 Iteration 6: Estimated 56238 PSMs with q<0.01 Iteration 7: Estimated 56238 PSMs with q<0.01 Iteration 8: Estimated 56238 PSMs with q<0.01 Iteration 9: Estimated 56237 PSMs with q<0.01 Iteration 10: Estimated 56237 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0242 0.0249 0.0585 retentiontime 0.0000 0.0000 0.0000 rank -0.2093 -0.2224 -0.2101 abs_ppm -0.1119 -0.1159 -0.0986 isotope_errors -0.5495 -0.4366 -0.7055 log10_evalue 0.6404 0.6614 0.4168 hyperscore 0.5824 0.5404 0.4842 delta_hyperscore 0.5933 0.5307 0.6313 matched_ion_num -0.7580 -0.7824 -0.7615 complementary_ions -0.0701 -0.0351 0.0456 ion_series -0.0320 -0.0195 -0.0144 weighted_average_abs_fragment_ppm 0.1562 0.1878 0.1495 peptide_length 0.0000 0.0000 0.0000 ntt -0.2201 -0.1501 -0.1980 nmc 0.0000 0.0000 0.0000 charge_1 -0.0046 0.0272 -0.0014 charge_2 0.0002 -0.0204 -0.0020 charge_3 0.0143 -0.0236 0.0148 charge_4 0.0103 -0.0168 -0.0113 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0555 -0.0111 -0.0457 15.9949M 0.5526 0.5296 0.5156 unweighted_spectral_entropy -0.6075 -0.5990 -0.5791 delta_RT_loess 2.5965 2.4012 2.5365 m0 Found 56225 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 59945 target PSMs and 4125 decoy PSMs. Calculating q values. Final list yields 56230 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 24.62 cpu seconds or 24 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-73_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-73_percolator_decoy_psms.tsv S22049-Arjun-73_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-73_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-73_percolator_decoy_psms.tsv S22049-Arjun-73_edited.pin Started Wed Mar 8 11:07:10 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-73_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 60060 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 56927 positives and 3133 negatives, size ratio=18.1701 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 35548 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 35634 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 35523 training set positives with q<0.01 in that direction. Found 53355 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.275 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 53899 PSMs with q<0.01 Iteration 2: Estimated 54020 PSMs with q<0.01 Iteration 3: Estimated 54078 PSMs with q<0.01 Iteration 4: Estimated 54099 PSMs with q<0.01 Iteration 5: Estimated 54106 PSMs with q<0.01 Iteration 6: Estimated 54105 PSMs with q<0.01 Iteration 7: Estimated 54110 PSMs with q<0.01 Iteration 8: Estimated 54110 PSMs with q<0.01 Iteration 9: Estimated 54114 PSMs with q<0.01 Iteration 10: Estimated 54116 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0723 -0.0095 0.0515 retentiontime 0.0000 0.0000 0.0000 rank -0.1748 -0.1841 -0.1688 abs_ppm -0.0968 -0.0812 -0.1214 isotope_errors -0.8847 -0.7075 -0.7402 log10_evalue 0.6072 0.5427 -0.0046 hyperscore 0.3651 0.4881 0.5879 delta_hyperscore 0.6378 0.6085 1.1587 matched_ion_num -0.9528 -0.8236 -0.7821 complementary_ions 0.0570 -0.0033 0.0137 ion_series 0.0104 -0.0161 0.0067 weighted_average_abs_fragment_ppm 0.3147 0.1606 0.1232 peptide_length 0.0000 0.0000 0.0000 ntt -0.1475 -0.1466 -0.1208 nmc 0.0000 0.0000 0.0000 charge_1 0.0331 0.0045 0.0396 charge_2 -0.0244 0.0026 -0.0319 charge_3 -0.0206 -0.0252 -0.0303 charge_4 -0.0070 0.0205 0.0213 charge_5 -0.0298 -0.0091 -0.0087 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0358 -0.0434 -0.0234 15.9949M 0.4772 0.5027 0.4631 unweighted_spectral_entropy -0.4592 -0.4228 -0.4008 delta_RT_loess 2.7618 2.5745 2.7392 m0 Found 54096 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 56927 target PSMs and 3133 decoy PSMs. Calculating q values. Final list yields 54097 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.71 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-23_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-23_percolator_decoy_psms.tsv S22049-Arjun-23_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-23_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-23_percolator_decoy_psms.tsv S22049-Arjun-23_edited.pin Started Wed Mar 8 11:07:26 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-23_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 75852 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 70500 positives and 5352 negatives, size ratio=13.1726 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 42565 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 42669 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 42661 training set positives with q<0.01 in that direction. Found 63938 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.239 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 65394 PSMs with q<0.01 Iteration 2: Estimated 65638 PSMs with q<0.01 Iteration 3: Estimated 65739 PSMs with q<0.01 Iteration 4: Estimated 65756 PSMs with q<0.01 Iteration 5: Estimated 65762 PSMs with q<0.01 Iteration 6: Estimated 65765 PSMs with q<0.01 Iteration 7: Estimated 65764 PSMs with q<0.01 Iteration 8: Estimated 65764 PSMs with q<0.01 Iteration 9: Estimated 65765 PSMs with q<0.01 Iteration 10: Estimated 65765 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0007 -0.0696 -0.0040 retentiontime 0.0000 0.0000 0.0000 rank -0.2576 -0.2823 -0.2372 abs_ppm -0.1057 -0.0873 -0.0999 isotope_errors -0.5617 -0.6849 -0.7101 log10_evalue 0.8654 0.3686 0.5758 hyperscore 0.6378 0.6269 0.5482 delta_hyperscore 0.5667 0.9595 0.5701 matched_ion_num -0.8885 -0.9178 -0.9422 complementary_ions -0.1696 -0.1349 -0.0160 ion_series -0.0623 -0.0303 -0.0613 weighted_average_abs_fragment_ppm 0.1698 0.1968 0.1740 peptide_length 0.0000 0.0000 0.0000 ntt -0.1442 -0.1731 -0.1516 nmc 0.0000 0.0000 0.0000 charge_1 0.0143 0.0316 0.0130 charge_2 -0.0172 -0.0328 -0.0155 charge_3 0.0052 -0.0129 0.0032 charge_4 0.0170 0.0642 0.0203 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0149 -0.0257 -0.0470 15.9949M 0.5822 0.5667 0.5608 unweighted_spectral_entropy -0.6384 -0.6499 -0.5913 delta_RT_loess 2.2944 2.6256 2.2140 m0 Found 65772 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 70500 target PSMs and 5352 decoy PSMs. Calculating q values. Final list yields 65773 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.57 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-118_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-118_percolator_decoy_psms.tsv S22049-Arjun-118_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-118_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-118_percolator_decoy_psms.tsv S22049-Arjun-118_edited.pin Started Wed Mar 8 11:07:45 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-118_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 54684 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 51245 positives and 3439 negatives, size ratio=14.9011 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 31520 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 31467 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 31538 training set positives with q<0.01 in that direction. Found 47246 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.881 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 48006 PSMs with q<0.01 Iteration 2: Estimated 48265 PSMs with q<0.01 Iteration 3: Estimated 48354 PSMs with q<0.01 Iteration 4: Estimated 48356 PSMs with q<0.01 Iteration 5: Estimated 48354 PSMs with q<0.01 Iteration 6: Estimated 48351 PSMs with q<0.01 Iteration 7: Estimated 48351 PSMs with q<0.01 Iteration 8: Estimated 48351 PSMs with q<0.01 Iteration 9: Estimated 48348 PSMs with q<0.01 Iteration 10: Estimated 48351 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1242 0.0931 0.0254 retentiontime 0.0000 0.0000 0.0000 rank -0.1967 -0.1803 -0.2118 abs_ppm -0.1128 -0.1414 -0.1565 isotope_errors -0.6298 -0.3085 -0.3470 log10_evalue 0.3932 0.6909 0.5145 hyperscore 0.3529 0.5211 0.5579 delta_hyperscore 0.6841 0.6956 0.9900 matched_ion_num -0.5347 -0.4316 -0.6455 complementary_ions -0.2148 -0.3026 -0.1933 ion_series -0.0345 -0.0228 -0.0085 weighted_average_abs_fragment_ppm 0.0939 0.1442 0.2407 peptide_length 0.0000 0.0000 0.0000 ntt -0.1141 -0.1283 -0.1609 nmc 0.0000 0.0000 0.0000 charge_1 -0.0059 0.0147 0.0294 charge_2 0.0076 -0.0136 -0.0280 charge_3 -0.0141 -0.0096 -0.0133 charge_4 0.0000 0.0000 0.0000 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0275 -0.0380 -0.0435 15.9949M 0.4427 0.4557 0.4443 unweighted_spectral_entropy -0.5336 -0.4853 -0.4566 delta_RT_loess 2.1513 2.3122 2.5071 m0 Found 48347 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 51245 target PSMs and 3439 decoy PSMs. Calculating q values. Final list yields 48347 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 10.48 cpu seconds or 10 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-61-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-61-2nd_percolator_decoy_psms.tsv S22049-Arjun-61-2nd_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-61-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-61-2nd_percolator_decoy_psms.tsv S22049-Arjun-61-2nd_edited.pin Started Wed Mar 8 11:07:57 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-61-2nd_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 63434 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 59260 positives and 4174 negatives, size ratio=14.1974 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36069 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 35858 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36079 training set positives with q<0.01 in that direction. Found 53983 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.139 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55019 PSMs with q<0.01 Iteration 2: Estimated 55320 PSMs with q<0.01 Iteration 3: Estimated 55393 PSMs with q<0.01 Iteration 4: Estimated 55428 PSMs with q<0.01 Iteration 5: Estimated 55439 PSMs with q<0.01 Iteration 6: Estimated 55437 PSMs with q<0.01 Iteration 7: Estimated 55434 PSMs with q<0.01 Iteration 8: Estimated 55432 PSMs with q<0.01 Iteration 9: Estimated 55432 PSMs with q<0.01 Iteration 10: Estimated 55432 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0010 0.0148 0.0609 retentiontime 0.0000 0.0000 0.0000 rank -0.2245 -0.2305 -0.2315 abs_ppm -0.1107 -0.1204 -0.0856 isotope_errors -0.4597 -0.5087 -0.6426 log10_evalue 0.8060 0.9166 0.3491 hyperscore 0.4305 0.4677 0.3802 delta_hyperscore 0.4190 0.4034 0.5499 matched_ion_num -0.8331 -0.8515 -0.7583 complementary_ions -0.0749 -0.0173 0.0947 ion_series -0.0148 -0.0110 -0.0112 weighted_average_abs_fragment_ppm 0.2320 0.1716 0.1126 peptide_length 0.0000 0.0000 0.0000 ntt -0.1847 -0.1614 -0.1295 nmc 0.0000 0.0000 0.0000 charge_1 0.0401 0.0460 0.0368 charge_2 -0.0402 -0.0456 -0.0418 charge_3 -0.0145 -0.0091 0.0144 charge_4 0.0605 0.0209 0.0044 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0313 -0.0269 -0.0355 15.9949M 0.5818 0.5123 0.5118 unweighted_spectral_entropy -0.6056 -0.6191 -0.5806 delta_RT_loess 2.2776 2.4187 2.2463 m0 Found 55442 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 59260 target PSMs and 4174 decoy PSMs. Calculating q values. Final list yields 55444 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.92 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-9_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-9_percolator_decoy_psms.tsv S22049-Arjun-9_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-9_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-9_percolator_decoy_psms.tsv S22049-Arjun-9_edited.pin Started Wed Mar 8 11:08:13 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-9_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 62770 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 58717 positives and 4053 negatives, size ratio=14.4873 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36008 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36076 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36071 training set positives with q<0.01 in that direction. Found 54019 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.004 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 54864 PSMs with q<0.01 Iteration 2: Estimated 55090 PSMs with q<0.01 Iteration 3: Estimated 55157 PSMs with q<0.01 Iteration 4: Estimated 55202 PSMs with q<0.01 Iteration 5: Estimated 55237 PSMs with q<0.01 Iteration 6: Estimated 55253 PSMs with q<0.01 Iteration 7: Estimated 55254 PSMs with q<0.01 Iteration 8: Estimated 55252 PSMs with q<0.01 Iteration 9: Estimated 55250 PSMs with q<0.01 Iteration 10: Estimated 55248 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1001 0.0737 0.0796 retentiontime 0.0000 0.0000 0.0000 rank -0.1809 -0.1894 -0.2428 abs_ppm -0.1261 -0.1117 -0.1112 isotope_errors -0.6654 -0.6020 -0.4252 log10_evalue 0.2866 0.3026 0.7304 hyperscore 0.5101 0.5124 0.6159 delta_hyperscore 0.5836 0.7386 0.4868 matched_ion_num -0.5383 -0.6230 -0.6692 complementary_ions -0.2004 -0.2004 -0.1328 ion_series -0.0321 -0.0230 -0.0290 weighted_average_abs_fragment_ppm 0.0193 0.1463 0.0641 peptide_length 0.0000 0.0000 0.0000 ntt -0.1436 -0.1441 -0.1266 nmc 0.0000 0.0000 0.0000 charge_1 -0.0279 0.0095 -0.0176 charge_2 0.0230 -0.0111 0.0166 charge_3 0.0346 0.0107 0.0078 charge_4 0.0000 0.0000 0.0000 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0169 -0.0581 -0.0512 15.9949M 0.4937 0.4850 0.5481 unweighted_spectral_entropy -0.5487 -0.5020 -0.4873 delta_RT_loess 2.1937 2.2535 2.1430 m0 Found 55240 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 58717 target PSMs and 4053 decoy PSMs. Calculating q values. Final list yields 55242 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.69 cpu seconds or 17 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-27_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-27_percolator_decoy_psms.tsv S22049-Arjun-27_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-27_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-27_percolator_decoy_psms.tsv S22049-Arjun-27_edited.pin Started Wed Mar 8 11:08:32 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-27_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 75209 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 69531 positives and 5678 negatives, size ratio=12.2457 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 41639 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 41670 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 41864 training set positives with q<0.01 in that direction. Found 62613 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.247 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 64124 PSMs with q<0.01 Iteration 2: Estimated 64403 PSMs with q<0.01 Iteration 3: Estimated 64497 PSMs with q<0.01 Iteration 4: Estimated 64514 PSMs with q<0.01 Iteration 5: Estimated 64519 PSMs with q<0.01 Iteration 6: Estimated 64515 PSMs with q<0.01 Iteration 7: Estimated 64516 PSMs with q<0.01 Iteration 8: Estimated 64515 PSMs with q<0.01 Iteration 9: Estimated 64515 PSMs with q<0.01 Iteration 10: Estimated 64517 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0572 -0.0142 0.0288 retentiontime 0.0000 0.0000 0.0000 rank -0.2357 -0.2129 -0.1872 abs_ppm -0.1248 -0.0830 -0.0963 isotope_errors -0.7720 -0.8109 -0.8443 log10_evalue 0.4187 0.8934 0.7628 hyperscore 0.5616 0.5507 0.5810 delta_hyperscore 0.4354 0.4642 0.3063 matched_ion_num -0.6153 -0.6733 -0.7844 complementary_ions 0.0170 -0.1293 -0.0396 ion_series -0.0047 -0.0238 -0.0405 weighted_average_abs_fragment_ppm 0.2219 0.1991 0.1327 peptide_length 0.0000 0.0000 0.0000 ntt -0.1910 -0.1515 -0.1080 nmc 0.0000 0.0000 0.0000 charge_1 0.0229 0.0442 0.0657 charge_2 -0.0278 -0.0180 -0.0394 charge_3 0.0238 -0.1061 -0.0820 charge_4 -0.0386 0.0728 -0.0265 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0572 -0.0226 -0.0093 15.9949M 0.5679 0.5353 0.5902 unweighted_spectral_entropy -0.7102 -0.6783 -0.4748 delta_RT_loess 2.4505 2.1420 1.9352 m0 Found 64463 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 69531 target PSMs and 5678 decoy PSMs. Calculating q values. Final list yields 64464 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 19.28 cpu seconds or 19 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-82_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-82_percolator_decoy_psms.tsv S22049-Arjun-82_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-82_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-82_percolator_decoy_psms.tsv S22049-Arjun-82_edited.pin Started Wed Mar 8 11:08:53 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-82_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 64049 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 59878 positives and 4171 negatives, size ratio=14.3558 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36448 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36447 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36386 training set positives with q<0.01 in that direction. Found 54660 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.022 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55673 PSMs with q<0.01 Iteration 2: Estimated 55836 PSMs with q<0.01 Iteration 3: Estimated 55903 PSMs with q<0.01 Iteration 4: Estimated 55912 PSMs with q<0.01 Iteration 5: Estimated 55912 PSMs with q<0.01 Iteration 6: Estimated 55918 PSMs with q<0.01 Iteration 7: Estimated 55919 PSMs with q<0.01 Iteration 8: Estimated 55919 PSMs with q<0.01 Iteration 9: Estimated 55920 PSMs with q<0.01 Iteration 10: Estimated 55919 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0702 0.0525 0.0439 retentiontime 0.0000 0.0000 0.0000 rank -0.1677 -0.2402 -0.2306 abs_ppm -0.1405 -0.1332 -0.1059 isotope_errors -0.7796 -0.7215 -0.6149 log10_evalue 0.8635 0.5596 0.8970 hyperscore 0.5077 0.4277 0.3530 delta_hyperscore 0.5692 0.6046 0.5315 matched_ion_num -0.9506 -0.8721 -0.9194 complementary_ions -0.0484 -0.0200 -0.0581 ion_series -0.0463 -0.0470 -0.0329 weighted_average_abs_fragment_ppm 0.1227 0.1489 0.1309 peptide_length 0.0000 0.0000 0.0000 ntt -0.2078 -0.1597 -0.1757 nmc 0.0000 0.0000 0.0000 charge_1 -0.0169 -0.0002 -0.0235 charge_2 0.0010 -0.0222 -0.0040 charge_3 0.0327 0.0577 0.0147 charge_4 0.0552 0.0323 0.2308 charge_5 -0.0079 -0.0099 -0.0093 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0302 -0.0409 -0.0438 15.9949M 0.5546 0.5516 0.5220 unweighted_spectral_entropy -0.4523 -0.5500 -0.5161 delta_RT_loess 2.1682 2.5022 2.4302 m0 Found 55926 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 59878 target PSMs and 4171 decoy PSMs. Calculating q values. Final list yields 55934 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.38 cpu seconds or 17 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-63-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-63-2nd_percolator_decoy_psms.tsv S22049-Arjun-63-2nd_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-63-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-63-2nd_percolator_decoy_psms.tsv S22049-Arjun-63-2nd_edited.pin Started Wed Mar 8 11:09:12 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-63-2nd_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 78534 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 73133 positives and 5401 negatives, size ratio=13.5406 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 44318 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 44489 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 44559 training set positives with q<0.01 in that direction. Found 66626 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.686 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 67957 PSMs with q<0.01 Iteration 2: Estimated 68166 PSMs with q<0.01 Iteration 3: Estimated 68249 PSMs with q<0.01 Iteration 4: Estimated 68266 PSMs with q<0.01 Iteration 5: Estimated 68270 PSMs with q<0.01 Iteration 6: Estimated 68270 PSMs with q<0.01 Iteration 7: Estimated 68270 PSMs with q<0.01 Iteration 8: Estimated 68269 PSMs with q<0.01 Iteration 9: Estimated 68265 PSMs with q<0.01 Iteration 10: Estimated 68270 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0950 0.0313 0.0802 retentiontime 0.0000 0.0000 0.0000 rank -0.1949 -0.2187 -0.2346 abs_ppm -0.0557 -0.0968 -0.1139 isotope_errors -0.8964 -0.8874 -1.0369 log10_evalue 0.0370 0.2395 0.3626 hyperscore 0.5418 0.4913 0.3239 delta_hyperscore 1.1502 1.0192 0.5811 matched_ion_num -0.7708 -0.9335 -0.8202 complementary_ions 0.0401 -0.0374 -0.0238 ion_series -0.0483 -0.0301 -0.0366 weighted_average_abs_fragment_ppm 0.1736 0.1252 0.0955 peptide_length 0.0000 0.0000 0.0000 ntt -0.1163 -0.1518 -0.1554 nmc 0.0000 0.0000 0.0000 charge_1 0.0244 0.0241 0.0064 charge_2 -0.0253 -0.0367 -0.0213 charge_3 0.0008 0.0338 0.0386 charge_4 -0.0194 -0.0110 -0.0211 charge_5 0.0682 0.0011 0.0647 charge_6 -0.0078 -0.0085 -0.0089 charge_7_or_more -0.0244 -0.0049 -0.0189 15.9949M 0.4937 0.5755 0.5461 unweighted_spectral_entropy -0.5468 -0.5047 -0.5636 delta_RT_loess 2.1967 2.3818 2.4838 m0 Found 68269 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 73133 target PSMs and 5401 decoy PSMs. Calculating q values. Final list yields 68269 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 17.16 cpu seconds or 17 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-115_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-115_percolator_decoy_psms.tsv S22049-Arjun-115_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-115_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-115_percolator_decoy_psms.tsv S22049-Arjun-115_edited.pin Started Wed Mar 8 11:09:32 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-115_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 58298 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 54876 positives and 3422 negatives, size ratio=16.0362 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 33850 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 33926 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 33802 training set positives with q<0.01 in that direction. Found 50779 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.928 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 51469 PSMs with q<0.01 Iteration 2: Estimated 51643 PSMs with q<0.01 Iteration 3: Estimated 51674 PSMs with q<0.01 Iteration 4: Estimated 51678 PSMs with q<0.01 Iteration 5: Estimated 51674 PSMs with q<0.01 Iteration 6: Estimated 51669 PSMs with q<0.01 Iteration 7: Estimated 51670 PSMs with q<0.01 Iteration 8: Estimated 51670 PSMs with q<0.01 Iteration 9: Estimated 51671 PSMs with q<0.01 Iteration 10: Estimated 51671 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0540 0.0135 0.0296 retentiontime 0.0000 0.0000 0.0000 rank -0.1688 -0.2172 -0.1936 abs_ppm -0.1029 -0.1254 -0.0785 isotope_errors -0.7758 -0.7908 -0.7339 log10_evalue 0.9180 0.5546 0.5703 hyperscore 0.5934 0.6486 0.5354 delta_hyperscore -0.0338 0.5586 0.3887 matched_ion_num -0.6744 -0.7444 -0.7890 complementary_ions 0.0748 -0.0056 0.0346 ion_series -0.0569 -0.0169 -0.0209 weighted_average_abs_fragment_ppm 0.0999 0.0942 0.1283 peptide_length 0.0000 0.0000 0.0000 ntt -0.1125 -0.0765 -0.1241 nmc 0.0000 0.0000 0.0000 charge_1 0.0127 0.0223 -0.0021 charge_2 -0.0035 -0.0110 0.0053 charge_3 -0.0397 -0.0490 -0.0121 charge_4 -0.0147 -0.0217 -0.0162 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0372 -0.0141 -0.0397 15.9949M 0.5197 0.4415 0.5172 unweighted_spectral_entropy -0.5389 -0.4904 -0.5018 delta_RT_loess 2.2864 2.1352 2.1746 m0 Found 51660 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 54876 target PSMs and 3422 decoy PSMs. Calculating q values. Final list yields 51661 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 18.12 cpu seconds or 18 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-20_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-20_percolator_decoy_psms.tsv S22049-Arjun-20_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-20_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-20_percolator_decoy_psms.tsv S22049-Arjun-20_edited.pin Started Wed Mar 8 11:09:52 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-20_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 78320 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 72638 positives and 5682 negatives, size ratio=12.7839 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 43780 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 43677 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 43881 training set positives with q<0.01 in that direction. Found 65626 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.284 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 67056 PSMs with q<0.01 Iteration 2: Estimated 67254 PSMs with q<0.01 Iteration 3: Estimated 67336 PSMs with q<0.01 Iteration 4: Estimated 67358 PSMs with q<0.01 Iteration 5: Estimated 67364 PSMs with q<0.01 Iteration 6: Estimated 67365 PSMs with q<0.01 Iteration 7: Estimated 67365 PSMs with q<0.01 Iteration 8: Estimated 67365 PSMs with q<0.01 Iteration 9: Estimated 67362 PSMs with q<0.01 Iteration 10: Estimated 67361 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0814 0.0521 0.0855 retentiontime 0.0000 0.0000 0.0000 rank -0.2360 -0.2556 -0.2626 abs_ppm -0.1462 -0.1456 -0.1306 isotope_errors -0.5047 -0.6034 -0.6072 log10_evalue 0.4180 0.6261 0.6813 hyperscore 0.6188 0.5429 0.5944 delta_hyperscore 1.0367 0.7582 0.6412 matched_ion_num -0.9756 -0.8970 -0.9541 complementary_ions -0.1227 -0.0831 -0.0904 ion_series -0.0285 -0.0317 -0.0441 weighted_average_abs_fragment_ppm 0.0500 0.1413 0.0855 peptide_length 0.0000 0.0000 0.0000 ntt -0.1506 -0.1789 -0.1282 nmc 0.0000 0.0000 0.0000 charge_1 0.0377 0.0358 0.0448 charge_2 -0.0262 -0.0326 -0.0301 charge_3 -0.0481 -0.0096 -0.0522 charge_4 0.0138 -0.0163 -0.0134 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0375 -0.0451 -0.0360 15.9949M 0.5552 0.5767 0.5926 unweighted_spectral_entropy -0.6588 -0.5635 -0.5169 delta_RT_loess 2.4178 2.5273 2.4921 m0 Found 67330 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 72638 target PSMs and 5682 decoy PSMs. Calculating q values. Final list yields 67333 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.48 cpu seconds or 17 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-76_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-76_percolator_decoy_psms.tsv S22049-Arjun-76_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-76_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-76_percolator_decoy_psms.tsv S22049-Arjun-76_edited.pin Started Wed Mar 8 11:10:11 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-76_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 60303 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 56810 positives and 3493 negatives, size ratio=16.264 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 34957 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 35083 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 35169 training set positives with q<0.01 in that direction. Found 52575 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.005 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 53392 PSMs with q<0.01 Iteration 2: Estimated 53556 PSMs with q<0.01 Iteration 3: Estimated 53643 PSMs with q<0.01 Iteration 4: Estimated 53669 PSMs with q<0.01 Iteration 5: Estimated 53685 PSMs with q<0.01 Iteration 6: Estimated 53688 PSMs with q<0.01 Iteration 7: Estimated 53688 PSMs with q<0.01 Iteration 8: Estimated 53688 PSMs with q<0.01 Iteration 9: Estimated 53688 PSMs with q<0.01 Iteration 10: Estimated 53688 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0736 -0.0340 -0.0220 retentiontime 0.0000 0.0000 0.0000 rank -0.1848 -0.1897 -0.1775 abs_ppm -0.1415 -0.1067 -0.1346 isotope_errors -0.6202 -0.5352 -0.4753 log10_evalue 0.4755 0.4591 0.5880 hyperscore 0.4518 0.4612 0.5692 delta_hyperscore 0.7604 0.5957 0.5910 matched_ion_num -0.8995 -0.7430 -0.7616 complementary_ions -0.1279 -0.0591 -0.0196 ion_series -0.0281 -0.0206 -0.0371 weighted_average_abs_fragment_ppm 0.2542 0.1803 0.2432 peptide_length 0.0000 0.0000 0.0000 ntt -0.1542 -0.1195 -0.1298 nmc 0.0000 0.0000 0.0000 charge_1 0.0265 0.0243 0.0424 charge_2 -0.0204 -0.0165 -0.0306 charge_3 -0.0246 -0.0297 -0.0524 charge_4 0.0107 0.0090 0.0417 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0008 -0.0424 -0.0275 15.9949M 0.5329 0.4860 0.4894 unweighted_spectral_entropy -0.5199 -0.4883 -0.4910 delta_RT_loess 2.3500 2.1998 2.4467 m0 Found 53667 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 56810 target PSMs and 3493 decoy PSMs. Calculating q values. Final list yields 53667 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 18.49 cpu seconds or 18 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-102_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-102_percolator_decoy_psms.tsv S22049-Arjun-102_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-102_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-102_percolator_decoy_psms.tsv S22049-Arjun-102_edited.pin Started Wed Mar 8 11:10:31 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-102_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 43305 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 40894 positives and 2411 negatives, size ratio=16.9614 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 25385 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 25307 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 25459 training set positives with q<0.01 in that direction. Found 38061 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.672 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 38196 PSMs with q<0.01 Iteration 2: Estimated 38209 PSMs with q<0.01 Iteration 3: Estimated 38219 PSMs with q<0.01 Iteration 4: Estimated 38226 PSMs with q<0.01 Iteration 5: Estimated 38225 PSMs with q<0.01 Iteration 6: Estimated 38227 PSMs with q<0.01 Iteration 7: Estimated 38229 PSMs with q<0.01 Iteration 8: Estimated 38231 PSMs with q<0.01 Iteration 9: Estimated 38232 PSMs with q<0.01 Iteration 10: Estimated 38232 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1216 0.1070 0.0523 retentiontime 0.0000 0.0000 0.0000 rank -0.0910 -0.1074 -0.1221 abs_ppm -0.0745 -0.1079 -0.0967 isotope_errors 0.0166 0.1309 0.0802 log10_evalue 0.0120 -0.1776 -0.3255 hyperscore 0.7101 0.8279 0.8612 delta_hyperscore 0.7598 1.0895 1.3295 matched_ion_num -0.2722 -0.2185 -0.2411 complementary_ions -0.2248 -0.2809 -0.3863 ion_series -0.0244 -0.0334 0.0061 weighted_average_abs_fragment_ppm 0.1696 0.2183 0.2326 peptide_length 0.0000 0.0000 0.0000 ntt -0.1199 -0.1294 -0.1401 nmc 0.0000 0.0000 0.0000 charge_1 -0.0041 -0.0012 -0.0121 charge_2 0.0091 0.0066 0.0182 charge_3 -0.0327 -0.0357 -0.0394 charge_4 0.0000 0.0000 0.0000 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0128 0.0320 0.0118 15.9949M 0.8853 0.8828 0.9936 unweighted_spectral_entropy -0.2155 -0.1135 -0.1410 delta_RT_loess 1.5643 1.7114 1.8329 m0 Found 38199 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 40894 target PSMs and 2411 decoy PSMs. Calculating q values. Final list yields 38203 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 9.476 cpu seconds or 10 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-35_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-35_percolator_decoy_psms.tsv S22049-Arjun-35_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-35_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-35_percolator_decoy_psms.tsv S22049-Arjun-35_edited.pin Started Wed Mar 8 11:10:42 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-35_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 60383 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 55604 positives and 4779 negatives, size ratio=11.6351 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 32996 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 33091 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 33133 training set positives with q<0.01 in that direction. Found 49593 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.944 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 50714 PSMs with q<0.01 Iteration 2: Estimated 50905 PSMs with q<0.01 Iteration 3: Estimated 50988 PSMs with q<0.01 Iteration 4: Estimated 51030 PSMs with q<0.01 Iteration 5: Estimated 51034 PSMs with q<0.01 Iteration 6: Estimated 51038 PSMs with q<0.01 Iteration 7: Estimated 51036 PSMs with q<0.01 Iteration 8: Estimated 51037 PSMs with q<0.01 Iteration 9: Estimated 51039 PSMs with q<0.01 Iteration 10: Estimated 51039 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0287 -0.0388 0.0508 retentiontime 0.0000 0.0000 0.0000 rank -0.2638 -0.2216 -0.2455 abs_ppm -0.1244 -0.1271 -0.1040 isotope_errors -0.6299 -0.5316 -0.7358 log10_evalue 0.2169 0.7122 0.5362 hyperscore 0.7882 0.7801 0.5030 delta_hyperscore 1.2879 0.4116 0.4922 matched_ion_num -1.0251 -0.6167 -0.6835 complementary_ions -0.0319 -0.1207 -0.1314 ion_series -0.0188 -0.0266 -0.0115 weighted_average_abs_fragment_ppm 0.0932 0.1640 0.0525 peptide_length 0.0000 0.0000 0.0000 ntt -0.1351 -0.1695 -0.1328 nmc 0.0000 0.0000 0.0000 charge_1 -0.0075 0.0127 0.0013 charge_2 0.0044 -0.0112 -0.0056 charge_3 0.0124 -0.0061 0.0280 charge_4 0.0282 -0.0149 -0.0288 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0342 -0.0302 -0.0139 15.9949M 0.6346 0.6295 0.6231 unweighted_spectral_entropy -0.7058 -0.6403 -0.6113 delta_RT_loess 2.7262 2.4416 2.2414 m0 Found 51031 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 55604 target PSMs and 4779 decoy PSMs. Calculating q values. Final list yields 51034 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.35 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-113_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-113_percolator_decoy_psms.tsv S22049-Arjun-113_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-113_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-113_percolator_decoy_psms.tsv S22049-Arjun-113_edited.pin Started Wed Mar 8 11:10:58 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-113_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 53084 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 50242 positives and 2842 negatives, size ratio=17.6784 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 31157 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 31215 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 31261 training set positives with q<0.01 in that direction. Found 46806 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.108 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 47367 PSMs with q<0.01 Iteration 2: Estimated 47515 PSMs with q<0.01 Iteration 3: Estimated 47584 PSMs with q<0.01 Iteration 4: Estimated 47616 PSMs with q<0.01 Iteration 5: Estimated 47630 PSMs with q<0.01 Iteration 6: Estimated 47631 PSMs with q<0.01 Iteration 7: Estimated 47633 PSMs with q<0.01 Iteration 8: Estimated 47635 PSMs with q<0.01 Iteration 9: Estimated 47638 PSMs with q<0.01 Iteration 10: Estimated 47639 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0080 0.0700 0.0624 retentiontime 0.0000 0.0000 0.0000 rank -0.1703 -0.1761 -0.1636 abs_ppm -0.1120 -0.1055 -0.1071 isotope_errors -0.4976 -0.4672 -0.7216 log10_evalue 0.6185 0.2615 0.0121 hyperscore 0.6249 0.5692 0.5683 delta_hyperscore 0.3488 0.8146 0.7550 matched_ion_num -0.5207 -0.5119 -0.4351 complementary_ions -0.0423 -0.0190 -0.0197 ion_series 0.0021 -0.0065 0.0318 weighted_average_abs_fragment_ppm 0.1319 0.0781 0.0428 peptide_length 0.0000 0.0000 0.0000 ntt -0.0970 -0.1092 -0.0975 nmc 0.0000 0.0000 0.0000 charge_1 0.0138 0.0272 0.0087 charge_2 -0.0064 -0.0249 -0.0076 charge_3 -0.0325 -0.0099 -0.0058 charge_4 -0.0014 -0.0161 0.0047 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0571 -0.0472 -0.0339 15.9949M 0.4294 0.4457 0.4588 unweighted_spectral_entropy -0.5010 -0.5212 -0.4602 delta_RT_loess 2.3624 2.4569 2.1203 m0 Found 47620 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 50242 target PSMs and 2842 decoy PSMs. Calculating q values. Final list yields 47622 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 12.94 cpu seconds or 13 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-46_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-46_percolator_decoy_psms.tsv S22049-Arjun-46_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-46_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-46_percolator_decoy_psms.tsv S22049-Arjun-46_edited.pin Started Wed Mar 8 11:11:13 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-46_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 69582 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 64974 positives and 4608 negatives, size ratio=14.1003 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 39545 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 39563 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 39598 training set positives with q<0.01 in that direction. Found 59349 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.162 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 60396 PSMs with q<0.01 Iteration 2: Estimated 60565 PSMs with q<0.01 Iteration 3: Estimated 60617 PSMs with q<0.01 Iteration 4: Estimated 60629 PSMs with q<0.01 Iteration 5: Estimated 60641 PSMs with q<0.01 Iteration 6: Estimated 60653 PSMs with q<0.01 Iteration 7: Estimated 60652 PSMs with q<0.01 Iteration 8: Estimated 60652 PSMs with q<0.01 Iteration 9: Estimated 60660 PSMs with q<0.01 Iteration 10: Estimated 60662 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0560 0.0113 0.0243 retentiontime 0.0000 0.0000 0.0000 rank -0.2200 -0.2550 -0.2322 abs_ppm -0.0960 -0.1634 -0.1402 isotope_errors -0.5535 -0.6412 -0.3846 log10_evalue 1.1896 0.7696 0.9899 hyperscore 0.4866 0.6399 0.6048 delta_hyperscore 0.4651 0.9757 0.5884 matched_ion_num -0.8872 -1.0209 -0.8477 complementary_ions -0.0360 -0.0650 -0.1747 ion_series -0.0200 0.0099 0.0123 weighted_average_abs_fragment_ppm 0.1947 0.1981 0.1258 peptide_length 0.0000 0.0000 0.0000 ntt -0.1930 -0.1780 -0.1740 nmc 0.0000 0.0000 0.0000 charge_1 0.0110 0.0328 0.0010 charge_2 -0.0145 -0.0324 0.0043 charge_3 0.0113 -0.0200 -0.0191 charge_4 0.0033 0.0704 -0.0015 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0123 -0.0396 -0.0152 15.9949M 0.5160 0.5745 0.5475 unweighted_spectral_entropy -0.5884 -0.5240 -0.5022 delta_RT_loess 2.3572 3.0040 2.4979 m0 Found 60653 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 64974 target PSMs and 4608 decoy PSMs. Calculating q values. Final list yields 60653 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 24.27 cpu seconds or 24 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-100_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-100_percolator_decoy_psms.tsv S22049-Arjun-100_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-100_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-100_percolator_decoy_psms.tsv S22049-Arjun-100_edited.pin Started Wed Mar 8 11:11:39 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-100_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 62561 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 58984 positives and 3577 negatives, size ratio=16.4898 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36529 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36668 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36617 training set positives with q<0.01 in that direction. Found 54881 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.03 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55513 PSMs with q<0.01 Iteration 2: Estimated 55700 PSMs with q<0.01 Iteration 3: Estimated 55774 PSMs with q<0.01 Iteration 4: Estimated 55807 PSMs with q<0.01 Iteration 5: Estimated 55825 PSMs with q<0.01 Iteration 6: Estimated 55830 PSMs with q<0.01 Iteration 7: Estimated 55834 PSMs with q<0.01 Iteration 8: Estimated 55836 PSMs with q<0.01 Iteration 9: Estimated 55838 PSMs with q<0.01 Iteration 10: Estimated 55833 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0181 -0.0239 0.0072 retentiontime 0.0000 0.0000 0.0000 rank -0.1880 -0.1808 -0.1944 abs_ppm -0.1010 -0.0851 -0.1068 isotope_errors -0.4688 -0.7643 -0.6336 log10_evalue 0.9193 0.5015 0.4887 hyperscore 0.4684 0.4207 0.4254 delta_hyperscore 0.4587 0.6831 0.8274 matched_ion_num -0.8479 -0.7733 -0.9047 complementary_ions 0.0071 -0.0164 -0.0718 ion_series -0.0384 -0.0292 -0.0323 weighted_average_abs_fragment_ppm 0.1473 0.1732 0.1245 peptide_length 0.0000 0.0000 0.0000 ntt -0.1493 -0.1586 -0.1212 nmc 0.0000 0.0000 0.0000 charge_1 0.0012 0.0187 0.0283 charge_2 -0.0067 -0.0187 -0.0209 charge_3 0.0213 -0.0125 -0.0208 charge_4 -0.0181 0.0364 -0.0095 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0321 -0.0339 0.0042 15.9949M 0.4799 0.4944 0.4868 unweighted_spectral_entropy -0.5066 -0.4558 -0.4623 delta_RT_loess 2.5067 2.6226 2.4544 m0 Found 55834 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 58984 target PSMs and 3577 decoy PSMs. Calculating q values. Final list yields 55834 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.59 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-109_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-109_percolator_decoy_psms.tsv S22049-Arjun-109_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-109_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-109_percolator_decoy_psms.tsv S22049-Arjun-109_edited.pin Started Wed Mar 8 11:11:55 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-109_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 56946 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 52617 positives and 4329 negatives, size ratio=12.1545 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 31464 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 31565 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 31557 training set positives with q<0.01 in that direction. Found 47282 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.905 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 48151 PSMs with q<0.01 Iteration 2: Estimated 48262 PSMs with q<0.01 Iteration 3: Estimated 48305 PSMs with q<0.01 Iteration 4: Estimated 48311 PSMs with q<0.01 Iteration 5: Estimated 48317 PSMs with q<0.01 Iteration 6: Estimated 48322 PSMs with q<0.01 Iteration 7: Estimated 48323 PSMs with q<0.01 Iteration 8: Estimated 48321 PSMs with q<0.01 Iteration 9: Estimated 48323 PSMs with q<0.01 Iteration 10: Estimated 48322 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0794 0.0985 0.2242 retentiontime 0.0000 0.0000 0.0000 rank -0.1943 -0.2083 -0.1626 abs_ppm -0.0598 -0.1175 -0.0680 isotope_errors -0.6895 -0.7607 -0.7290 log10_evalue 0.3689 0.2474 0.3473 hyperscore 0.4331 0.5041 0.4291 delta_hyperscore 0.5815 0.9825 0.5468 matched_ion_num -0.6849 -0.7700 -0.6148 complementary_ions 0.1163 -0.0230 0.0993 ion_series -0.0236 -0.0815 -0.0305 weighted_average_abs_fragment_ppm 0.1623 0.2277 0.0236 peptide_length 0.0000 0.0000 0.0000 ntt -0.0597 -0.1416 -0.0271 nmc 0.0000 0.0000 0.0000 charge_1 0.0168 0.0142 0.0150 charge_2 -0.0236 -0.0427 -0.0199 charge_3 0.0126 0.0915 0.0041 charge_4 0.0585 0.0706 0.0688 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0427 0.0063 0.0631 15.9949M 0.6191 0.6943 0.6108 unweighted_spectral_entropy -0.4865 -0.5272 -0.5013 delta_RT_loess 2.0045 2.3872 1.6801 m0 Found 48300 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 52617 target PSMs and 4329 decoy PSMs. Calculating q values. Final list yields 48304 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 10.61 cpu seconds or 10 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-3_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-3_percolator_decoy_psms.tsv S22049-Arjun-3_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-3_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-3_percolator_decoy_psms.tsv S22049-Arjun-3_edited.pin Started Wed Mar 8 11:12:07 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-3_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 73654 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 68875 positives and 4779 negatives, size ratio=14.412 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 42088 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 42189 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 42124 training set positives with q<0.01 in that direction. Found 63186 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.282 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 64237 PSMs with q<0.01 Iteration 2: Estimated 64470 PSMs with q<0.01 Iteration 3: Estimated 64574 PSMs with q<0.01 Iteration 4: Estimated 64599 PSMs with q<0.01 Iteration 5: Estimated 64615 PSMs with q<0.01 Iteration 6: Estimated 64619 PSMs with q<0.01 Iteration 7: Estimated 64622 PSMs with q<0.01 Iteration 8: Estimated 64620 PSMs with q<0.01 Iteration 9: Estimated 64621 PSMs with q<0.01 Iteration 10: Estimated 64621 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0863 0.0779 0.1250 retentiontime 0.0000 0.0000 0.0000 rank -0.2182 -0.2104 -0.2357 abs_ppm -0.1118 -0.0943 -0.1334 isotope_errors -0.5782 -0.7142 -0.7144 log10_evalue 0.3803 0.1039 0.1324 hyperscore 0.6385 0.5678 0.6076 delta_hyperscore 0.6666 1.0372 0.9035 matched_ion_num -0.6481 -0.5543 -0.6711 complementary_ions -0.1125 -0.1365 -0.0896 ion_series -0.0377 -0.0349 -0.0250 weighted_average_abs_fragment_ppm 0.1074 0.1953 0.1085 peptide_length 0.0000 0.0000 0.0000 ntt -0.1508 -0.2279 -0.1566 nmc 0.0000 0.0000 0.0000 charge_1 0.0032 -0.0024 0.0276 charge_2 -0.0102 0.0044 -0.0250 charge_3 0.0089 -0.0265 -0.0315 charge_4 0.0594 0.0746 0.0789 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0445 -0.0416 -0.0267 15.9949M 0.5566 0.5281 0.5425 unweighted_spectral_entropy -0.6179 -0.6491 -0.5956 delta_RT_loess 2.4820 2.1270 2.6517 m0 Found 64601 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 68875 target PSMs and 4779 decoy PSMs. Calculating q values. Final list yields 64603 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.58 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-50_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-50_percolator_decoy_psms.tsv S22049-Arjun-50_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-50_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-50_percolator_decoy_psms.tsv S22049-Arjun-50_edited.pin Started Wed Mar 8 11:12:26 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-50_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 72461 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 67761 positives and 4700 negatives, size ratio=14.4172 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 41521 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 41377 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 41469 training set positives with q<0.01 in that direction. Found 62154 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.192 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 63238 PSMs with q<0.01 Iteration 2: Estimated 63466 PSMs with q<0.01 Iteration 3: Estimated 63544 PSMs with q<0.01 Iteration 4: Estimated 63574 PSMs with q<0.01 Iteration 5: Estimated 63573 PSMs with q<0.01 Iteration 6: Estimated 63567 PSMs with q<0.01 Iteration 7: Estimated 63565 PSMs with q<0.01 Iteration 8: Estimated 63568 PSMs with q<0.01 Iteration 9: Estimated 63566 PSMs with q<0.01 Iteration 10: Estimated 63571 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0714 0.0384 0.1144 retentiontime 0.0000 0.0000 0.0000 rank -0.1535 -0.2324 -0.1934 abs_ppm -0.1692 -0.1387 -0.1683 isotope_errors -0.7907 -0.8850 -0.6119 log10_evalue 0.2737 -0.1041 0.1926 hyperscore 0.4590 0.6129 0.5753 delta_hyperscore 1.1040 1.3751 0.7959 matched_ion_num -0.9892 -0.9144 -0.6783 complementary_ions -0.1972 -0.0944 0.1317 ion_series -0.0729 -0.0432 -0.0626 weighted_average_abs_fragment_ppm 0.0811 0.1138 0.0624 peptide_length 0.0000 0.0000 0.0000 ntt -0.1847 -0.1044 -0.1636 nmc 0.0000 0.0000 0.0000 charge_1 -0.0119 -0.0051 -0.0357 charge_2 -0.0076 0.0048 0.0207 charge_3 0.0674 0.0032 0.0395 charge_4 0.0124 -0.0087 0.0785 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0000 -0.0258 0.0102 15.9949M 0.5995 0.5164 0.5198 unweighted_spectral_entropy -0.4792 -0.4974 -0.3994 delta_RT_loess 1.9817 2.5265 1.9637 m0 Found 63525 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 67761 target PSMs and 4700 decoy PSMs. Calculating q values. Final list yields 63527 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 19.25 cpu seconds or 19 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-57_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-57_percolator_decoy_psms.tsv S22049-Arjun-57_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-57_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-57_percolator_decoy_psms.tsv S22049-Arjun-57_edited.pin Started Wed Mar 8 11:12:48 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-57_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 71916 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 67764 positives and 4152 negatives, size ratio=16.3208 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 42029 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 42084 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 42058 training set positives with q<0.01 in that direction. Found 63062 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.18 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 63857 PSMs with q<0.01 Iteration 2: Estimated 64052 PSMs with q<0.01 Iteration 3: Estimated 64104 PSMs with q<0.01 Iteration 4: Estimated 64128 PSMs with q<0.01 Iteration 5: Estimated 64134 PSMs with q<0.01 Iteration 6: Estimated 64139 PSMs with q<0.01 Iteration 7: Estimated 64138 PSMs with q<0.01 Iteration 8: Estimated 64142 PSMs with q<0.01 Iteration 9: Estimated 64141 PSMs with q<0.01 Iteration 10: Estimated 64141 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0203 -0.0254 0.0518 retentiontime 0.0000 0.0000 0.0000 rank -0.2081 -0.2246 -0.1970 abs_ppm -0.0945 -0.1383 -0.1186 isotope_errors -0.4488 -0.5212 -0.6569 log10_evalue 0.5564 0.9863 0.3739 hyperscore 0.4477 0.4922 0.4960 delta_hyperscore 0.8027 0.5828 1.0237 matched_ion_num -0.7854 -0.8959 -0.8482 complementary_ions -0.1491 -0.2288 -0.1420 ion_series -0.0110 -0.0445 -0.0054 weighted_average_abs_fragment_ppm 0.1270 0.1939 0.0704 peptide_length 0.0000 0.0000 0.0000 ntt -0.1347 -0.1094 -0.1217 nmc 0.0000 0.0000 0.0000 charge_1 0.0016 0.0253 0.0027 charge_2 0.0021 -0.0297 -0.0096 charge_3 -0.0074 0.0143 0.0235 charge_4 -0.0163 -0.0094 -0.0084 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0311 -0.0022 -0.0323 15.9949M 0.4965 0.5387 0.4821 unweighted_spectral_entropy -0.5140 -0.4946 -0.5034 delta_RT_loess 2.3848 2.6436 2.3674 m0 Found 64132 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 67764 target PSMs and 4152 decoy PSMs. Calculating q values. Final list yields 64138 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 17.78 cpu seconds or 18 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-128_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-128_percolator_decoy_psms.tsv S22049-Arjun-128_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-128_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-128_percolator_decoy_psms.tsv S22049-Arjun-128_edited.pin Started Wed Mar 8 11:13:08 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-128_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 54582 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 51108 positives and 3474 negatives, size ratio=14.7116 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 31341 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 31399 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 31283 training set positives with q<0.01 in that direction. Found 46984 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.124 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 47791 PSMs with q<0.01 Iteration 2: Estimated 47980 PSMs with q<0.01 Iteration 3: Estimated 48074 PSMs with q<0.01 Iteration 4: Estimated 48101 PSMs with q<0.01 Iteration 5: Estimated 48101 PSMs with q<0.01 Iteration 6: Estimated 48107 PSMs with q<0.01 Iteration 7: Estimated 48107 PSMs with q<0.01 Iteration 8: Estimated 48108 PSMs with q<0.01 Iteration 9: Estimated 48107 PSMs with q<0.01 Iteration 10: Estimated 48106 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0307 0.0621 0.0986 retentiontime 0.0000 0.0000 0.0000 rank -0.2326 -0.2072 -0.2163 abs_ppm -0.0697 -0.0515 -0.0535 isotope_errors -0.3948 -0.6328 -0.4103 log10_evalue 0.7657 0.4026 0.7917 hyperscore 0.4208 0.4191 0.5154 delta_hyperscore 0.4111 0.4893 0.9006 matched_ion_num -0.6213 -0.6455 -0.7053 complementary_ions -0.0530 -0.0197 -0.2874 ion_series 0.0174 -0.0092 -0.0139 weighted_average_abs_fragment_ppm 0.2093 0.0872 0.0732 peptide_length 0.0000 0.0000 0.0000 ntt -0.1407 -0.1238 -0.1052 nmc 0.0000 0.0000 0.0000 charge_1 0.0154 0.0013 -0.0226 charge_2 -0.0181 0.0031 0.0262 charge_3 0.0139 -0.0226 -0.0168 charge_4 -0.0096 -0.0092 -0.0095 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0495 -0.0222 -0.0684 15.9949M 0.5018 0.4696 0.4540 unweighted_spectral_entropy -0.5931 -0.5516 -0.4764 delta_RT_loess 2.2415 2.1587 2.2104 m0 Found 48097 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 51108 target PSMs and 3474 decoy PSMs. Calculating q values. Final list yields 48098 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.65 cpu seconds or 15 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-54_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-54_percolator_decoy_psms.tsv S22049-Arjun-54_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-54_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-54_percolator_decoy_psms.tsv S22049-Arjun-54_edited.pin Started Wed Mar 8 11:13:25 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-54_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 72729 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 68018 positives and 4711 negatives, size ratio=14.4381 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 41497 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 41639 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 41654 training set positives with q<0.01 in that direction. Found 62396 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.187 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 63413 PSMs with q<0.01 Iteration 2: Estimated 63627 PSMs with q<0.01 Iteration 3: Estimated 63700 PSMs with q<0.01 Iteration 4: Estimated 63730 PSMs with q<0.01 Iteration 5: Estimated 63729 PSMs with q<0.01 Iteration 6: Estimated 63722 PSMs with q<0.01 Iteration 7: Estimated 63723 PSMs with q<0.01 Iteration 8: Estimated 63722 PSMs with q<0.01 Iteration 9: Estimated 63722 PSMs with q<0.01 Iteration 10: Estimated 63722 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0092 0.0537 0.0033 retentiontime 0.0000 0.0000 0.0000 rank -0.2136 -0.2184 -0.2284 abs_ppm -0.1639 -0.1276 -0.1788 isotope_errors -0.7031 -0.6504 -0.7159 log10_evalue 1.4069 0.7296 0.8469 hyperscore 0.3312 0.4981 0.4960 delta_hyperscore 0.1464 0.5924 0.5856 matched_ion_num -0.8209 -0.8185 -0.8224 complementary_ions -0.0952 -0.1917 -0.0909 ion_series -0.0253 -0.0135 -0.0382 weighted_average_abs_fragment_ppm 0.1407 0.0586 0.1819 peptide_length 0.0000 0.0000 0.0000 ntt -0.1397 -0.1444 -0.1065 nmc 0.0000 0.0000 0.0000 charge_1 0.0150 0.0019 0.0482 charge_2 -0.0192 -0.0195 -0.0533 charge_3 0.0149 0.0628 0.0146 charge_4 -0.0045 -0.0014 0.0012 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0409 -0.0275 -0.0274 15.9949M 0.5097 0.5375 0.5316 unweighted_spectral_entropy -0.4666 -0.4328 -0.4182 delta_RT_loess 2.6457 2.4049 2.3963 m0 Found 63719 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 68018 target PSMs and 4711 decoy PSMs. Calculating q values. Final list yields 63721 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.9 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-111_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-111_percolator_decoy_psms.tsv S22049-Arjun-111_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-111_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-111_percolator_decoy_psms.tsv S22049-Arjun-111_edited.pin Started Wed Mar 8 11:13:43 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-111_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 59712 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 55508 positives and 4204 negatives, size ratio=13.2036 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 33556 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 33372 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 33603 training set positives with q<0.01 in that direction. Found 50254 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.436 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 51130 PSMs with q<0.01 Iteration 2: Estimated 51371 PSMs with q<0.01 Iteration 3: Estimated 51487 PSMs with q<0.01 Iteration 4: Estimated 51498 PSMs with q<0.01 Iteration 5: Estimated 51508 PSMs with q<0.01 Iteration 6: Estimated 51504 PSMs with q<0.01 Iteration 7: Estimated 51504 PSMs with q<0.01 Iteration 8: Estimated 51508 PSMs with q<0.01 Iteration 9: Estimated 51508 PSMs with q<0.01 Iteration 10: Estimated 51509 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1827 0.0493 -0.0260 retentiontime 0.0000 0.0000 0.0000 rank -0.2448 -0.2048 -0.2118 abs_ppm -0.0890 -0.0689 -0.1171 isotope_errors -0.4851 -0.7043 -0.5536 log10_evalue 0.2496 0.6660 0.6282 hyperscore 0.5066 0.4027 0.3943 delta_hyperscore 1.2120 0.6027 0.3840 matched_ion_num -0.7710 -0.8299 -0.5610 complementary_ions -0.1902 -0.0232 -0.0017 ion_series -0.0353 -0.0131 0.0041 weighted_average_abs_fragment_ppm -0.0412 0.1221 0.2055 peptide_length 0.0000 0.0000 0.0000 ntt -0.1454 -0.1212 -0.1727 nmc 0.0000 0.0000 0.0000 charge_1 -0.0379 -0.0299 0.0011 charge_2 0.0332 0.0243 0.0029 charge_3 0.0244 0.0293 -0.0182 charge_4 -0.0024 -0.0148 -0.0098 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0025 -0.0075 -0.0440 15.9949M 0.4668 0.4857 0.4868 unweighted_spectral_entropy -0.6248 -0.6008 -0.5700 delta_RT_loess 2.0679 2.0939 2.1954 m0 Found 51450 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 55508 target PSMs and 4204 decoy PSMs. Calculating q values. Final list yields 51453 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.19 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-64-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-64-2nd_percolator_decoy_psms.tsv S22049-Arjun-64-2nd_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-64-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-64-2nd_percolator_decoy_psms.tsv S22049-Arjun-64-2nd_edited.pin Started Wed Mar 8 11:14:00 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-64-2nd_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 70957 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 66181 positives and 4776 negatives, size ratio=13.857 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 40107 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 40114 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 40128 training set positives with q<0.01 in that direction. Found 60172 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.499 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 61422 PSMs with q<0.01 Iteration 2: Estimated 61654 PSMs with q<0.01 Iteration 3: Estimated 61746 PSMs with q<0.01 Iteration 4: Estimated 61771 PSMs with q<0.01 Iteration 5: Estimated 61773 PSMs with q<0.01 Iteration 6: Estimated 61773 PSMs with q<0.01 Iteration 7: Estimated 61771 PSMs with q<0.01 Iteration 8: Estimated 61771 PSMs with q<0.01 Iteration 9: Estimated 61772 PSMs with q<0.01 Iteration 10: Estimated 61773 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0249 0.0315 0.0219 retentiontime 0.0000 0.0000 0.0000 rank -0.2098 -0.2529 -0.2314 abs_ppm -0.1223 -0.1181 -0.0852 isotope_errors -0.5913 -0.7310 -0.7994 log10_evalue 1.0087 0.5899 0.9009 hyperscore 0.4715 0.5318 0.3559 delta_hyperscore 0.4573 0.6879 0.4203 matched_ion_num -0.9076 -0.8537 -0.8560 complementary_ions -0.0574 0.1769 -0.0707 ion_series -0.0378 -0.0195 -0.0683 weighted_average_abs_fragment_ppm 0.1636 0.1547 0.1965 peptide_length 0.0000 0.0000 0.0000 ntt -0.1624 -0.1384 -0.1356 nmc 0.0000 0.0000 0.0000 charge_1 0.0072 0.0184 0.0320 charge_2 -0.0001 -0.0015 -0.0225 charge_3 -0.0267 -0.0670 -0.0478 charge_4 -0.0081 -0.0000 0.0390 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0136 -0.0292 -0.0240 15.9949M 0.5502 0.4371 0.5367 unweighted_spectral_entropy -0.6220 -0.4422 -0.5945 delta_RT_loess 2.5603 2.4690 2.5601 m0 Found 61737 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 66181 target PSMs and 4776 decoy PSMs. Calculating q values. Final list yields 61739 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-13_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-13_percolator_decoy_psms.tsv S22049-Arjun-13_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-13_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-13_percolator_decoy_psms.tsv S22049-Arjun-13_edited.pin Started Wed Mar 8 11:14:19 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-13_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 64155 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 59781 positives and 4374 negatives, size ratio=13.6674 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36383 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36293 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36401 training set positives with q<0.01 in that direction. Found 54525 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.439 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55551 PSMs with q<0.01 Iteration 2: Estimated 55801 PSMs with q<0.01 Iteration 3: Estimated 55905 PSMs with q<0.01 Iteration 4: Estimated 55943 PSMs with q<0.01 Iteration 5: Estimated 55943 PSMs with q<0.01 Iteration 6: Estimated 55950 PSMs with q<0.01 Iteration 7: Estimated 55953 PSMs with q<0.01 Iteration 8: Estimated 55953 PSMs with q<0.01 Iteration 9: Estimated 55954 PSMs with q<0.01 Iteration 10: Estimated 55954 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0824 0.0476 0.0653 retentiontime 0.0000 0.0000 0.0000 rank -0.1912 -0.1872 -0.1806 abs_ppm -0.1107 -0.0941 -0.1153 isotope_errors -0.6018 -0.5564 -0.6801 log10_evalue 0.4836 0.2495 0.0241 hyperscore 0.5181 0.5198 0.5022 delta_hyperscore 0.6261 0.7376 0.8766 matched_ion_num -0.7008 -0.7074 -0.7205 complementary_ions -0.0740 0.0249 -0.0692 ion_series -0.0021 0.0098 -0.0268 weighted_average_abs_fragment_ppm 0.1543 0.1362 0.1835 peptide_length 0.0000 0.0000 0.0000 ntt -0.1510 -0.1365 -0.1377 nmc 0.0000 0.0000 0.0000 charge_1 0.0042 0.0117 0.0307 charge_2 -0.0134 -0.0092 -0.0284 charge_3 0.0640 -0.0181 -0.0181 charge_4 0.0000 0.0000 0.0000 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0584 -0.0343 -0.0403 15.9949M 0.5005 0.5332 0.5492 unweighted_spectral_entropy -0.5489 -0.4723 -0.4994 delta_RT_loess 2.3871 2.2659 2.2670 m0 Found 55959 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 59781 target PSMs and 4374 decoy PSMs. Calculating q values. Final list yields 55959 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 12.68 cpu seconds or 13 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-98_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-98_percolator_decoy_psms.tsv S22049-Arjun-98_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-98_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-98_percolator_decoy_psms.tsv S22049-Arjun-98_edited.pin Started Wed Mar 8 11:14:34 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-98_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 59091 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 55424 positives and 3667 negatives, size ratio=15.1143 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 33943 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 34049 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 34065 training set positives with q<0.01 in that direction. Found 51017 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.922 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 51808 PSMs with q<0.01 Iteration 2: Estimated 52027 PSMs with q<0.01 Iteration 3: Estimated 52059 PSMs with q<0.01 Iteration 4: Estimated 52073 PSMs with q<0.01 Iteration 5: Estimated 52080 PSMs with q<0.01 Iteration 6: Estimated 52083 PSMs with q<0.01 Iteration 7: Estimated 52086 PSMs with q<0.01 Iteration 8: Estimated 52089 PSMs with q<0.01 Iteration 9: Estimated 52087 PSMs with q<0.01 Iteration 10: Estimated 52089 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0061 0.0672 0.0447 retentiontime 0.0000 0.0000 0.0000 rank -0.2336 -0.2101 -0.1927 abs_ppm -0.0630 -0.0997 -0.1257 isotope_errors -0.5548 -0.5255 -0.3840 log10_evalue 1.1350 0.5703 0.5406 hyperscore 0.4291 0.4726 0.5766 delta_hyperscore 0.3581 0.6550 1.0032 matched_ion_num -0.6394 -0.5568 -0.6943 complementary_ions -0.0825 -0.0756 -0.0906 ion_series 0.0242 -0.0015 -0.0006 weighted_average_abs_fragment_ppm 0.1848 0.0764 0.1655 peptide_length 0.0000 0.0000 0.0000 ntt -0.1733 -0.1241 -0.1157 nmc 0.0000 0.0000 0.0000 charge_1 0.0137 0.0052 0.0228 charge_2 -0.0253 -0.0271 -0.0302 charge_3 0.0180 0.0718 0.0245 charge_4 0.0694 -0.0029 -0.0073 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0185 -0.0156 -0.0145 15.9949M 0.4049 0.4690 0.4730 unweighted_spectral_entropy -0.3782 -0.6255 -0.5662 delta_RT_loess 1.9588 2.4488 2.6761 m0 Found 52078 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 55424 target PSMs and 3667 decoy PSMs. Calculating q values. Final list yields 52079 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.3 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-139_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-139_percolator_decoy_psms.tsv S22049-Arjun-139_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-139_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-139_percolator_decoy_psms.tsv S22049-Arjun-139_edited.pin Started Wed Mar 8 11:14:50 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-139_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 54043 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 50142 positives and 3901 negatives, size ratio=12.8536 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 29959 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 29981 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 29981 training set positives with q<0.01 in that direction. Found 44939 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.872 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 46011 PSMs with q<0.01 Iteration 2: Estimated 46278 PSMs with q<0.01 Iteration 3: Estimated 46377 PSMs with q<0.01 Iteration 4: Estimated 46396 PSMs with q<0.01 Iteration 5: Estimated 46391 PSMs with q<0.01 Iteration 6: Estimated 46394 PSMs with q<0.01 Iteration 7: Estimated 46395 PSMs with q<0.01 Iteration 8: Estimated 46395 PSMs with q<0.01 Iteration 9: Estimated 46396 PSMs with q<0.01 Iteration 10: Estimated 46396 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0719 -0.1032 -0.0637 retentiontime 0.0000 0.0000 0.0000 rank -0.2248 -0.2075 -0.2341 abs_ppm -0.0826 -0.1227 -0.0827 isotope_errors -0.7704 -0.7598 -0.5857 log10_evalue 0.5225 0.6962 0.6206 hyperscore 0.6706 0.6428 0.6323 delta_hyperscore 0.5465 0.2547 0.1876 matched_ion_num -0.7349 -0.6816 -0.4616 complementary_ions -0.0104 0.0824 0.0117 ion_series 0.0161 0.0174 0.0065 weighted_average_abs_fragment_ppm 0.1471 0.2553 0.2245 peptide_length 0.0000 0.0000 0.0000 ntt -0.1284 -0.1524 -0.1783 nmc 0.0000 0.0000 0.0000 charge_1 -0.0019 0.0168 -0.0012 charge_2 -0.0166 -0.0134 0.0036 charge_3 0.1089 -0.0203 -0.0184 charge_4 0.0389 -0.0150 0.0341 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0642 -0.0568 -0.0330 15.9949M 0.5054 0.4963 0.5249 unweighted_spectral_entropy -0.6314 -0.5368 -0.5814 delta_RT_loess 2.5088 2.4681 2.2766 m0 Found 46377 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 50142 target PSMs and 3901 decoy PSMs. Calculating q values. Final list yields 46377 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.18 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-42_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-42_percolator_decoy_psms.tsv S22049-Arjun-42_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-42_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-42_percolator_decoy_psms.tsv S22049-Arjun-42_edited.pin Started Wed Mar 8 11:15:08 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-42_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 70169 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 65906 positives and 4263 negatives, size ratio=15.46 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 40425 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 40446 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 40337 training set positives with q<0.01 in that direction. Found 60593 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.212 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 61701 PSMs with q<0.01 Iteration 2: Estimated 61933 PSMs with q<0.01 Iteration 3: Estimated 61992 PSMs with q<0.01 Iteration 4: Estimated 62027 PSMs with q<0.01 Iteration 5: Estimated 62040 PSMs with q<0.01 Iteration 6: Estimated 62044 PSMs with q<0.01 Iteration 7: Estimated 62036 PSMs with q<0.01 Iteration 8: Estimated 62045 PSMs with q<0.01 Iteration 9: Estimated 62046 PSMs with q<0.01 Iteration 10: Estimated 62042 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0461 0.0495 -0.0088 retentiontime 0.0000 0.0000 0.0000 rank -0.2066 -0.2119 -0.2295 abs_ppm -0.1740 -0.1346 -0.1389 isotope_errors -0.4713 -0.4914 -0.7242 log10_evalue 1.0058 1.0329 0.5950 hyperscore 0.4668 0.5133 0.5032 delta_hyperscore 0.6465 0.3953 0.8233 matched_ion_num -0.8472 -0.7564 -0.9162 complementary_ions -0.1895 -0.1566 -0.1729 ion_series -0.0026 -0.0330 -0.0198 weighted_average_abs_fragment_ppm 0.1472 0.1559 0.1397 peptide_length 0.0000 0.0000 0.0000 ntt -0.1998 -0.1330 -0.1792 nmc 0.0000 0.0000 0.0000 charge_1 -0.0020 0.0294 0.0151 charge_2 0.0047 -0.0197 -0.0087 charge_3 -0.0093 -0.0336 -0.0212 charge_4 -0.0009 -0.0097 -0.0094 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0232 -0.0332 -0.0425 15.9949M 0.5094 0.4901 0.5133 unweighted_spectral_entropy -0.5334 -0.5558 -0.5520 delta_RT_loess 2.2567 2.4346 2.5784 m0 Found 62040 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 65906 target PSMs and 4263 decoy PSMs. Calculating q values. Final list yields 62040 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.73 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-69_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-69_percolator_decoy_psms.tsv S22049-Arjun-69_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-69_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-69_percolator_decoy_psms.tsv S22049-Arjun-69_edited.pin Started Wed Mar 8 11:15:26 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-69_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 72760 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 68003 positives and 4757 negatives, size ratio=14.2954 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 41356 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 41517 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 41602 training set positives with q<0.01 in that direction. Found 62239 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.199 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 63375 PSMs with q<0.01 Iteration 2: Estimated 63616 PSMs with q<0.01 Iteration 3: Estimated 63673 PSMs with q<0.01 Iteration 4: Estimated 63705 PSMs with q<0.01 Iteration 5: Estimated 63709 PSMs with q<0.01 Iteration 6: Estimated 63709 PSMs with q<0.01 Iteration 7: Estimated 63708 PSMs with q<0.01 Iteration 8: Estimated 63708 PSMs with q<0.01 Iteration 9: Estimated 63712 PSMs with q<0.01 Iteration 10: Estimated 63710 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0686 0.0445 0.0631 retentiontime 0.0000 0.0000 0.0000 rank -0.1970 -0.2348 -0.2602 abs_ppm -0.1398 -0.0949 -0.1043 isotope_errors -0.4344 -0.3429 -0.5376 log10_evalue 0.4555 0.2941 0.5451 hyperscore 0.6034 0.5326 0.5475 delta_hyperscore 0.8766 1.2309 0.7278 matched_ion_num -0.7979 -0.8923 -0.6732 complementary_ions -0.0780 -0.1273 -0.1664 ion_series -0.0251 -0.0040 -0.0277 weighted_average_abs_fragment_ppm 0.1098 0.1792 0.1299 peptide_length 0.0000 0.0000 0.0000 ntt -0.1621 -0.1211 -0.1984 nmc 0.0000 0.0000 0.0000 charge_1 0.0322 0.0636 0.0295 charge_2 -0.0290 -0.0509 -0.0320 charge_3 -0.0209 -0.0497 0.0002 charge_4 0.0340 0.0125 0.0248 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0365 -0.0206 -0.0407 15.9949M 0.5093 0.5520 0.5162 unweighted_spectral_entropy -0.5208 -0.5391 -0.5012 delta_RT_loess 2.1899 2.4377 2.1702 m0 Found 63705 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 68003 target PSMs and 4757 decoy PSMs. Calculating q values. Final list yields 63707 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 24.61 cpu seconds or 25 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-126_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-126_percolator_decoy_psms.tsv S22049-Arjun-126_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-126_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-126_percolator_decoy_psms.tsv S22049-Arjun-126_edited.pin Started Wed Mar 8 11:15:53 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-126_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 52584 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 47953 positives and 4631 negatives, size ratio=10.3548 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 28316 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 28130 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 28314 training set positives with q<0.01 in that direction. Found 42326 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.886 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 43229 PSMs with q<0.01 Iteration 2: Estimated 43367 PSMs with q<0.01 Iteration 3: Estimated 43410 PSMs with q<0.01 Iteration 4: Estimated 43429 PSMs with q<0.01 Iteration 5: Estimated 43452 PSMs with q<0.01 Iteration 6: Estimated 43476 PSMs with q<0.01 Iteration 7: Estimated 43483 PSMs with q<0.01 Iteration 8: Estimated 43487 PSMs with q<0.01 Iteration 9: Estimated 43490 PSMs with q<0.01 Iteration 10: Estimated 43492 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0033 -0.0319 0.0020 retentiontime 0.0000 0.0000 0.0000 rank -0.2604 -0.2349 -0.2647 abs_ppm -0.0780 -0.0729 -0.1145 isotope_errors -0.7582 -1.0006 -0.9139 log10_evalue 0.5014 0.5556 0.5382 hyperscore 0.4870 0.3826 0.3756 delta_hyperscore 0.7573 0.8309 0.5879 matched_ion_num -0.8471 -0.8904 -0.7821 complementary_ions 0.0483 -0.2924 -0.0809 ion_series 0.0038 -0.0138 -0.0291 weighted_average_abs_fragment_ppm 0.3263 0.2486 0.2551 peptide_length 0.0000 0.0000 0.0000 ntt -0.1322 -0.1172 -0.1736 nmc 0.0000 0.0000 0.0000 charge_1 0.0328 0.0000 0.0228 charge_2 -0.0273 -0.0286 -0.0208 charge_3 -0.0306 0.1622 -0.0107 charge_4 -0.0193 -0.0187 -0.0179 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0100 0.0093 0.0338 15.9949M 0.7010 0.8205 0.6752 unweighted_spectral_entropy -0.5849 -0.4943 -0.5004 delta_RT_loess 2.5503 2.4795 2.3690 m0 Found 43461 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 47953 target PSMs and 4631 decoy PSMs. Calculating q values. Final list yields 43464 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 12.54 cpu seconds or 12 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-17_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-17_percolator_decoy_psms.tsv S22049-Arjun-17_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-17_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-17_percolator_decoy_psms.tsv S22049-Arjun-17_edited.pin Started Wed Mar 8 11:16:07 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-17_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 60785 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 56651 positives and 4134 negatives, size ratio=13.7037 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 34413 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 34314 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 34417 training set positives with q<0.01 in that direction. Found 51574 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.954 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 52522 PSMs with q<0.01 Iteration 2: Estimated 52753 PSMs with q<0.01 Iteration 3: Estimated 52854 PSMs with q<0.01 Iteration 4: Estimated 52902 PSMs with q<0.01 Iteration 5: Estimated 52908 PSMs with q<0.01 Iteration 6: Estimated 52907 PSMs with q<0.01 Iteration 7: Estimated 52909 PSMs with q<0.01 Iteration 8: Estimated 52911 PSMs with q<0.01 Iteration 9: Estimated 52908 PSMs with q<0.01 Iteration 10: Estimated 52911 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.1212 0.1157 0.0829 retentiontime 0.0000 0.0000 0.0000 rank -0.2505 -0.2084 -0.2227 abs_ppm -0.0956 -0.1179 -0.1092 isotope_errors -0.4211 -0.2887 -0.6061 log10_evalue 0.6928 0.7243 0.6631 hyperscore 0.5485 0.6096 0.5192 delta_hyperscore 0.5678 0.5921 0.4889 matched_ion_num -0.5208 -0.6920 -0.6453 complementary_ions -0.1723 -0.0382 -0.1685 ion_series -0.0642 -0.0322 -0.0651 weighted_average_abs_fragment_ppm 0.2077 0.2045 0.1651 peptide_length 0.0000 0.0000 0.0000 ntt -0.0933 -0.1221 -0.1110 nmc 0.0000 0.0000 0.0000 charge_1 0.0106 0.0254 0.0117 charge_2 -0.0113 -0.0243 -0.0107 charge_3 0.0097 -0.0109 -0.0092 charge_4 -0.0121 -0.0119 -0.0135 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0165 -0.0020 -0.0012 15.9949M 0.5658 0.5693 0.5549 unweighted_spectral_entropy -0.5887 -0.4381 -0.4945 delta_RT_loess 2.1161 2.0808 2.3582 m0 Found 52888 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 56651 target PSMs and 4134 decoy PSMs. Calculating q values. Final list yields 52888 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.69 cpu seconds or 17 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-94_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-94_percolator_decoy_psms.tsv S22049-Arjun-94_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-94_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-94_percolator_decoy_psms.tsv S22049-Arjun-94_edited.pin Started Wed Mar 8 11:16:26 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-94_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 60988 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 57318 positives and 3670 negatives, size ratio=15.618 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 35254 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 35338 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 35380 training set positives with q<0.01 in that direction. Found 52977 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.961 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 53608 PSMs with q<0.01 Iteration 2: Estimated 53717 PSMs with q<0.01 Iteration 3: Estimated 53807 PSMs with q<0.01 Iteration 4: Estimated 53834 PSMs with q<0.01 Iteration 5: Estimated 53839 PSMs with q<0.01 Iteration 6: Estimated 53839 PSMs with q<0.01 Iteration 7: Estimated 53838 PSMs with q<0.01 Iteration 8: Estimated 53840 PSMs with q<0.01 Iteration 9: Estimated 53841 PSMs with q<0.01 Iteration 10: Estimated 53841 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0205 0.0200 -0.0180 retentiontime 0.0000 0.0000 0.0000 rank -0.1937 -0.1441 -0.1941 abs_ppm -0.1142 -0.0568 -0.1206 isotope_errors -0.4723 -0.4497 -0.6044 log10_evalue 0.8726 0.8256 0.5442 hyperscore 0.4396 0.3549 0.3158 delta_hyperscore 0.6777 0.3543 0.7344 matched_ion_num -0.8475 -0.7089 -0.7850 complementary_ions -0.1831 0.0577 -0.1395 ion_series 0.0064 -0.0064 -0.0208 weighted_average_abs_fragment_ppm 0.1532 0.2206 0.2063 peptide_length 0.0000 0.0000 0.0000 ntt -0.1284 -0.1940 -0.1643 nmc 0.0000 0.0000 0.0000 charge_1 0.0217 0.0144 0.0201 charge_2 -0.0217 -0.0306 -0.0178 charge_3 -0.0122 0.0442 -0.0270 charge_4 0.0420 0.0378 0.0701 charge_5 -0.0100 -0.0070 -0.0095 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0281 -0.0239 -0.0214 15.9949M 0.5245 0.5542 0.5210 unweighted_spectral_entropy -0.5153 -0.4387 -0.4983 delta_RT_loess 2.4699 1.7318 2.3533 m0 Found 53815 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 57318 target PSMs and 3670 decoy PSMs. Calculating q values. Final list yields 53816 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.48 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-59-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-59-2nd_percolator_decoy_psms.tsv S22049-Arjun-59-2nd_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-59-2nd_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-59-2nd_percolator_decoy_psms.tsv S22049-Arjun-59-2nd_edited.pin Started Wed Mar 8 11:16:44 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-59-2nd_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 71946 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 67223 positives and 4723 negatives, size ratio=14.2331 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 40969 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 41119 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 41107 training set positives with q<0.01 in that direction. Found 61587 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.273 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 62589 PSMs with q<0.01 Iteration 2: Estimated 62792 PSMs with q<0.01 Iteration 3: Estimated 62897 PSMs with q<0.01 Iteration 4: Estimated 62925 PSMs with q<0.01 Iteration 5: Estimated 62934 PSMs with q<0.01 Iteration 6: Estimated 62939 PSMs with q<0.01 Iteration 7: Estimated 62940 PSMs with q<0.01 Iteration 8: Estimated 62946 PSMs with q<0.01 Iteration 9: Estimated 62948 PSMs with q<0.01 Iteration 10: Estimated 62948 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0294 0.0393 0.0391 retentiontime 0.0000 0.0000 0.0000 rank -0.2581 -0.2452 -0.2671 abs_ppm -0.0866 -0.0931 -0.0918 isotope_errors -0.3994 -0.6043 -0.4168 log10_evalue 0.6380 0.9026 0.9322 hyperscore 0.5271 0.5311 0.5152 delta_hyperscore 0.9016 0.7935 0.6960 matched_ion_num -0.9029 -0.9742 -0.8613 complementary_ions -0.0879 -0.1401 -0.1240 ion_series 0.0090 -0.0192 -0.0174 weighted_average_abs_fragment_ppm 0.1955 0.1742 0.1696 peptide_length 0.0000 0.0000 0.0000 ntt -0.1452 -0.1489 -0.1646 nmc 0.0000 0.0000 0.0000 charge_1 0.0404 0.0292 0.0103 charge_2 -0.0342 -0.0230 -0.0007 charge_3 -0.0193 -0.0178 -0.0275 charge_4 -0.0111 -0.0127 -0.0108 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0668 -0.0676 -0.0518 15.9949M 0.5006 0.5114 0.4788 unweighted_spectral_entropy -0.5318 -0.5320 -0.5516 delta_RT_loess 2.4658 2.7768 2.5989 m0 Found 62948 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 67223 target PSMs and 4723 decoy PSMs. Calculating q values. Final list yields 62950 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 14.36 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-31_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-31_percolator_decoy_psms.tsv S22049-Arjun-31_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-31_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-31_percolator_decoy_psms.tsv S22049-Arjun-31_edited.pin Started Wed Mar 8 11:17:01 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-31_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 61609 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 56816 positives and 4793 negatives, size ratio=11.854 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 33915 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 33860 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 33915 training set positives with q<0.01 in that direction. Found 50819 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.351 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 52026 PSMs with q<0.01 Iteration 2: Estimated 52242 PSMs with q<0.01 Iteration 3: Estimated 52372 PSMs with q<0.01 Iteration 4: Estimated 52398 PSMs with q<0.01 Iteration 5: Estimated 52419 PSMs with q<0.01 Iteration 6: Estimated 52424 PSMs with q<0.01 Iteration 7: Estimated 52423 PSMs with q<0.01 Iteration 8: Estimated 52424 PSMs with q<0.01 Iteration 9: Estimated 52423 PSMs with q<0.01 Iteration 10: Estimated 52424 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0691 0.0841 0.0829 retentiontime 0.0000 0.0000 0.0000 rank -0.2465 -0.2372 -0.2449 abs_ppm -0.1123 -0.1074 -0.1096 isotope_errors -0.5286 -0.6357 -0.6605 log10_evalue 0.7106 0.5070 0.5466 hyperscore 0.6414 0.5638 0.5698 delta_hyperscore 0.5369 0.9000 0.4597 matched_ion_num -0.6584 -0.8465 -0.5992 complementary_ions -0.0827 -0.1963 -0.1056 ion_series 0.0061 -0.0185 0.0026 weighted_average_abs_fragment_ppm 0.1082 0.0974 0.0728 peptide_length 0.0000 0.0000 0.0000 ntt -0.1362 -0.1066 -0.1367 nmc 0.0000 0.0000 0.0000 charge_1 0.0218 0.0268 0.0015 charge_2 -0.0255 -0.0248 -0.0022 charge_3 0.0138 -0.0095 0.0009 charge_4 0.0158 -0.0079 0.0165 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0231 -0.0153 0.0105 15.9949M 0.5190 0.5827 0.5404 unweighted_spectral_entropy -0.6713 -0.6362 -0.6510 delta_RT_loess 2.3933 2.4199 2.2692 m0 Found 52418 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 56816 target PSMs and 4793 decoy PSMs. Calculating q values. Final list yields 52422 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 12.72 cpu seconds or 12 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-122_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-122_percolator_decoy_psms.tsv S22049-Arjun-122_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-122_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-122_percolator_decoy_psms.tsv S22049-Arjun-122_edited.pin Started Wed Mar 8 11:17:16 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-122_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 57106 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 53733 positives and 3373 negatives, size ratio=15.9303 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 33120 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 33165 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 32988 training set positives with q<0.01 in that direction. Found 49622 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.906 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 50411 PSMs with q<0.01 Iteration 2: Estimated 50623 PSMs with q<0.01 Iteration 3: Estimated 50719 PSMs with q<0.01 Iteration 4: Estimated 50749 PSMs with q<0.01 Iteration 5: Estimated 50747 PSMs with q<0.01 Iteration 6: Estimated 50746 PSMs with q<0.01 Iteration 7: Estimated 50744 PSMs with q<0.01 Iteration 8: Estimated 50744 PSMs with q<0.01 Iteration 9: Estimated 50744 PSMs with q<0.01 Iteration 10: Estimated 50743 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0176 0.0107 0.0603 retentiontime 0.0000 0.0000 0.0000 rank -0.2081 -0.1922 -0.2043 abs_ppm -0.0978 -0.0865 -0.1061 isotope_errors -0.7243 -0.8089 -0.6416 log10_evalue 0.6161 0.1630 0.4563 hyperscore 0.3696 0.3207 0.3614 delta_hyperscore 0.4361 0.5270 0.3818 matched_ion_num -0.5263 -0.3957 -0.4675 complementary_ions -0.0760 0.0772 -0.0539 ion_series 0.0060 -0.0048 0.0221 weighted_average_abs_fragment_ppm 0.1362 0.1988 0.1348 peptide_length 0.0000 0.0000 0.0000 ntt -0.1457 -0.0969 -0.1327 nmc 0.0000 0.0000 0.0000 charge_1 -0.0301 0.0013 -0.0212 charge_2 0.0262 -0.0040 0.0171 charge_3 0.0303 0.0193 0.0298 charge_4 -0.0202 -0.0097 -0.0084 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0440 -0.0236 -0.0465 15.9949M 0.4321 0.4090 0.4406 unweighted_spectral_entropy -0.4349 -0.4532 -0.4714 delta_RT_loess 2.4100 2.3091 2.1801 m0 Found 50740 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 53733 target PSMs and 3373 decoy PSMs. Calculating q values. Final list yields 50745 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 21.39 cpu seconds or 22 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-24_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-24_percolator_decoy_psms.tsv S22049-Arjun-24_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-24_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-24_percolator_decoy_psms.tsv S22049-Arjun-24_edited.pin Started Wed Mar 8 11:17:40 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-24_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 76440 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 70761 positives and 5679 negatives, size ratio=12.4601 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 42346 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 42570 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 42526 training set positives with q<0.01 in that direction. Found 63723 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.701 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 65244 PSMs with q<0.01 Iteration 2: Estimated 65470 PSMs with q<0.01 Iteration 3: Estimated 65574 PSMs with q<0.01 Iteration 4: Estimated 65604 PSMs with q<0.01 Iteration 5: Estimated 65628 PSMs with q<0.01 Iteration 6: Estimated 65624 PSMs with q<0.01 Iteration 7: Estimated 65623 PSMs with q<0.01 Iteration 8: Estimated 65624 PSMs with q<0.01 Iteration 9: Estimated 65627 PSMs with q<0.01 Iteration 10: Estimated 65629 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0934 0.0784 0.0948 retentiontime 0.0000 0.0000 0.0000 rank -0.2558 -0.2435 -0.2578 abs_ppm -0.1291 -0.1469 -0.1451 isotope_errors -0.7177 -0.5775 -0.6123 log10_evalue 0.4809 0.7048 0.5716 hyperscore 0.5595 0.6194 0.4687 delta_hyperscore 0.4537 0.6168 0.5184 matched_ion_num -0.7931 -0.9282 -0.8187 complementary_ions 0.0018 -0.0489 0.0574 ion_series -0.0328 -0.0397 -0.0273 weighted_average_abs_fragment_ppm 0.0728 0.0804 0.0762 peptide_length 0.0000 0.0000 0.0000 ntt -0.1515 -0.1563 -0.1441 nmc 0.0000 0.0000 0.0000 charge_1 0.0078 0.0264 0.0231 charge_2 -0.0297 -0.0336 -0.0338 charge_3 0.0663 0.0130 0.0252 charge_4 0.0586 0.0513 0.0535 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0118 -0.0462 -0.0470 15.9949M 0.6266 0.5978 0.5432 unweighted_spectral_entropy -0.7295 -0.6024 -0.5791 delta_RT_loess 2.0764 2.4980 2.3316 m0 Found 65624 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 70761 target PSMs and 5679 decoy PSMs. Calculating q values. Final list yields 65624 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.36 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-72_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-72_percolator_decoy_psms.tsv S22049-Arjun-72_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-72_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-72_percolator_decoy_psms.tsv S22049-Arjun-72_edited.pin Started Wed Mar 8 11:17:58 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-72_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 75240 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 70198 positives and 5042 negatives, size ratio=13.9226 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 42737 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 42683 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 42831 training set positives with q<0.01 in that direction. Found 64115 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.619 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 65292 PSMs with q<0.01 Iteration 2: Estimated 65556 PSMs with q<0.01 Iteration 3: Estimated 65640 PSMs with q<0.01 Iteration 4: Estimated 65658 PSMs with q<0.01 Iteration 5: Estimated 65674 PSMs with q<0.01 Iteration 6: Estimated 65677 PSMs with q<0.01 Iteration 7: Estimated 65679 PSMs with q<0.01 Iteration 8: Estimated 65679 PSMs with q<0.01 Iteration 9: Estimated 65678 PSMs with q<0.01 Iteration 10: Estimated 65679 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0075 0.0289 0.0728 retentiontime 0.0000 0.0000 0.0000 rank -0.2573 -0.2346 -0.2342 abs_ppm -0.1317 -0.1563 -0.1499 isotope_errors -0.8351 -0.7896 -0.6175 log10_evalue 0.5731 0.6830 0.6376 hyperscore 0.5460 0.5938 0.5634 delta_hyperscore 0.5806 0.3480 0.4884 matched_ion_num -0.8837 -0.8130 -0.8936 complementary_ions -0.0688 -0.0518 -0.0077 ion_series -0.0425 -0.0211 -0.0007 weighted_average_abs_fragment_ppm 0.1599 0.1156 0.0810 peptide_length 0.0000 0.0000 0.0000 ntt -0.1594 -0.1422 -0.1760 nmc 0.0000 0.0000 0.0000 charge_1 0.0266 0.0349 0.0100 charge_2 -0.0236 -0.0281 -0.0219 charge_3 -0.0103 -0.0182 0.0379 charge_4 -0.0014 -0.0159 -0.0116 charge_5 -0.0083 -0.0094 -0.0069 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0581 -0.0218 -0.0420 15.9949M 0.5321 0.5464 0.5673 unweighted_spectral_entropy -0.5616 -0.5284 -0.5207 delta_RT_loess 2.6627 2.5747 2.5124 m0 Found 65674 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 70198 target PSMs and 5042 decoy PSMs. Calculating q values. Final list yields 65675 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 16.68 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-39_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-39_percolator_decoy_psms.tsv S22049-Arjun-39_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-39_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-39_percolator_decoy_psms.tsv S22049-Arjun-39_edited.pin Started Wed Mar 8 11:18:17 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-39_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 58828 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 55504 positives and 3324 negatives, size ratio=16.698 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 34369 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 34557 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 34488 training set positives with q<0.01 in that direction. Found 51665 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.278 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 52374 PSMs with q<0.01 Iteration 2: Estimated 52569 PSMs with q<0.01 Iteration 3: Estimated 52608 PSMs with q<0.01 Iteration 4: Estimated 52611 PSMs with q<0.01 Iteration 5: Estimated 52608 PSMs with q<0.01 Iteration 6: Estimated 52613 PSMs with q<0.01 Iteration 7: Estimated 52617 PSMs with q<0.01 Iteration 8: Estimated 52619 PSMs with q<0.01 Iteration 9: Estimated 52620 PSMs with q<0.01 Iteration 10: Estimated 52620 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0148 0.0787 0.0124 retentiontime 0.0000 0.0000 0.0000 rank -0.1692 -0.1976 -0.2110 abs_ppm -0.0819 -0.1341 -0.0991 isotope_errors -0.4585 -0.4241 -0.4678 log10_evalue 0.7929 0.6212 1.0571 hyperscore 0.5825 0.4560 0.4607 delta_hyperscore 0.3395 0.6561 -0.0060 matched_ion_num -0.6393 -0.7081 -0.5512 complementary_ions 0.1273 -0.1133 -0.0684 ion_series 0.0070 0.0160 -0.0160 weighted_average_abs_fragment_ppm 0.0867 0.0610 0.1541 peptide_length 0.0000 0.0000 0.0000 ntt -0.0989 -0.0817 -0.1164 nmc 0.0000 0.0000 0.0000 charge_1 -0.0043 0.0187 0.0246 charge_2 -0.0086 -0.0232 -0.0346 charge_3 0.0539 0.0205 0.0422 charge_4 0.0167 -0.0101 0.0006 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0084 -0.0049 -0.0318 15.9949M 0.4237 0.4636 0.4744 unweighted_spectral_entropy -0.4248 -0.4742 -0.5042 delta_RT_loess 1.8284 2.3213 2.2570 m0 Found 52593 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 55504 target PSMs and 3324 decoy PSMs. Calculating q values. Final list yields 52593 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 24.27 cpu seconds or 24 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-28_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-28_percolator_decoy_psms.tsv S22049-Arjun-28_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-28_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-28_percolator_decoy_psms.tsv S22049-Arjun-28_edited.pin Started Wed Mar 8 11:18:44 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-28_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 78176 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 72423 positives and 5753 negatives, size ratio=12.5887 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 43473 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 43573 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 43660 training set positives with q<0.01 in that direction. Found 65320 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.269 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 66761 PSMs with q<0.01 Iteration 2: Estimated 66998 PSMs with q<0.01 Iteration 3: Estimated 67102 PSMs with q<0.01 Iteration 4: Estimated 67144 PSMs with q<0.01 Iteration 5: Estimated 67141 PSMs with q<0.01 Iteration 6: Estimated 67143 PSMs with q<0.01 Iteration 7: Estimated 67141 PSMs with q<0.01 Iteration 8: Estimated 67145 PSMs with q<0.01 Iteration 9: Estimated 67142 PSMs with q<0.01 Iteration 10: Estimated 67145 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0944 0.0865 0.0381 retentiontime 0.0000 0.0000 0.0000 rank -0.2095 -0.1827 -0.2301 abs_ppm -0.1362 -0.1331 -0.1399 isotope_errors -0.5365 -0.7645 -0.8915 log10_evalue 0.4865 0.1540 0.0541 hyperscore 0.4882 0.4289 0.3905 delta_hyperscore 0.6553 0.8196 0.8428 matched_ion_num -0.8013 -0.7041 -0.8735 complementary_ions 0.0023 -0.0765 0.0242 ion_series -0.0266 -0.0211 -0.0503 weighted_average_abs_fragment_ppm 0.1218 0.0700 0.1466 peptide_length 0.0000 0.0000 0.0000 ntt -0.1751 -0.1984 -0.1765 nmc 0.0000 0.0000 0.0000 charge_1 0.0079 -0.0154 0.0373 charge_2 -0.0266 -0.0026 -0.0453 charge_3 0.0608 0.0490 0.0280 charge_4 -0.0120 0.0262 -0.0196 charge_5 -0.0084 -0.0073 -0.0084 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0502 -0.0470 -0.0424 15.9949M 0.5850 0.5674 0.5495 unweighted_spectral_entropy -0.5419 -0.4687 -0.5504 delta_RT_loess 2.3399 2.0369 2.3494 m0 Found 67121 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 72423 target PSMs and 5753 decoy PSMs. Calculating q values. Final list yields 67121 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.91 cpu seconds or 16 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-87_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-87_percolator_decoy_psms.tsv S22049-Arjun-87_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-87_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-87_percolator_decoy_psms.tsv S22049-Arjun-87_edited.pin Started Wed Mar 8 11:19:02 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-87_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 67354 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 63209 positives and 4145 negatives, size ratio=15.2495 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 38664 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 38869 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 38794 training set positives with q<0.01 in that direction. Found 58151 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.071 cpu seconds or 2 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 59149 PSMs with q<0.01 Iteration 2: Estimated 59382 PSMs with q<0.01 Iteration 3: Estimated 59480 PSMs with q<0.01 Iteration 4: Estimated 59497 PSMs with q<0.01 Iteration 5: Estimated 59489 PSMs with q<0.01 Iteration 6: Estimated 59491 PSMs with q<0.01 Iteration 7: Estimated 59493 PSMs with q<0.01 Iteration 8: Estimated 59493 PSMs with q<0.01 Iteration 9: Estimated 59491 PSMs with q<0.01 Iteration 10: Estimated 59492 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0371 -0.0168 -0.0292 retentiontime 0.0000 0.0000 0.0000 rank -0.1940 -0.2098 -0.1860 abs_ppm -0.1276 -0.1231 -0.0969 isotope_errors -0.8141 -0.3956 -0.7247 log10_evalue 0.8052 0.8672 0.9939 hyperscore 0.4353 0.7254 0.5090 delta_hyperscore 0.3473 0.6823 -0.0973 matched_ion_num -0.8884 -1.0071 -0.7384 complementary_ions -0.0792 -0.0447 0.1288 ion_series -0.0545 -0.0494 -0.0492 weighted_average_abs_fragment_ppm 0.1785 0.1827 0.2959 peptide_length 0.0000 0.0000 0.0000 ntt -0.1851 -0.1211 -0.1848 nmc 0.0000 0.0000 0.0000 charge_1 0.0439 0.0342 0.0473 charge_2 -0.0413 -0.0177 -0.0262 charge_3 0.0004 -0.0400 -0.0460 charge_4 -0.0296 -0.0231 -0.0451 charge_5 -0.0116 -0.0063 -0.0136 charge_6 -0.0140 -0.0132 -0.0140 charge_7_or_more -0.0622 -0.0774 -0.0754 15.9949M 0.5217 0.5226 0.5495 unweighted_spectral_entropy -0.6758 -0.6851 -0.6436 delta_RT_loess 2.5615 2.4278 2.5612 m0 Found 59511 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 63209 target PSMs and 4145 decoy PSMs. Calculating q values. Final list yields 59513 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 15.79 cpu seconds or 15 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-83_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-83_percolator_decoy_psms.tsv S22049-Arjun-83_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-83_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-83_percolator_decoy_psms.tsv S22049-Arjun-83_edited.pin Started Wed Mar 8 11:19:20 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-83_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 63083 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 59163 positives and 3920 negatives, size ratio=15.0926 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 36467 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 36408 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 36232 training set positives with q<0.01 in that direction. Found 54578 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.998 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 55490 PSMs with q<0.01 Iteration 2: Estimated 55725 PSMs with q<0.01 Iteration 3: Estimated 55763 PSMs with q<0.01 Iteration 4: Estimated 55768 PSMs with q<0.01 Iteration 5: Estimated 55783 PSMs with q<0.01 Iteration 6: Estimated 55784 PSMs with q<0.01 Iteration 7: Estimated 55787 PSMs with q<0.01 Iteration 8: Estimated 55789 PSMs with q<0.01 Iteration 9: Estimated 55787 PSMs with q<0.01 Iteration 10: Estimated 55786 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName -0.0157 0.0596 -0.0459 retentiontime 0.0000 0.0000 0.0000 rank -0.1634 -0.1987 -0.2092 abs_ppm -0.0883 -0.1017 -0.1185 isotope_errors -0.6677 -0.6190 -0.6392 log10_evalue 0.6259 0.6182 0.4989 hyperscore 0.5188 0.4912 0.6071 delta_hyperscore 0.4583 0.4006 0.6792 matched_ion_num -0.8300 -0.6983 -0.8523 complementary_ions 0.0290 0.0409 0.0022 ion_series -0.0152 -0.0057 -0.0456 weighted_average_abs_fragment_ppm 0.1467 0.1057 0.1983 peptide_length 0.0000 0.0000 0.0000 ntt -0.1619 -0.1298 -0.1454 nmc 0.0000 0.0000 0.0000 charge_1 0.0282 0.0192 0.0288 charge_2 -0.0251 -0.0219 -0.0202 charge_3 -0.0159 -0.0085 -0.0329 charge_4 0.0166 0.0597 0.0169 charge_5 -0.0100 -0.0098 -0.0103 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0402 -0.0391 -0.0214 15.9949M 0.5046 0.4893 0.5017 unweighted_spectral_entropy -0.6079 -0.5539 -0.5486 delta_RT_loess 2.5026 2.4554 2.5867 m0 Found 55797 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 59163 target PSMs and 3920 decoy PSMs. Calculating q values. Final list yields 55798 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 13.17 cpu seconds or 14 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-137_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-137_percolator_decoy_psms.tsv S22049-Arjun-137_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-137_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-137_percolator_decoy_psms.tsv S22049-Arjun-137_edited.pin Started Wed Mar 8 11:19:36 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-137_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 50058 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 47077 positives and 2981 negatives, size ratio=15.7924 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 29018 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 28931 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 28919 training set positives with q<0.01 in that direction. Found 43420 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 0.816 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 44142 PSMs with q<0.01 Iteration 2: Estimated 44374 PSMs with q<0.01 Iteration 3: Estimated 44453 PSMs with q<0.01 Iteration 4: Estimated 44473 PSMs with q<0.01 Iteration 5: Estimated 44484 PSMs with q<0.01 Iteration 6: Estimated 44487 PSMs with q<0.01 Iteration 7: Estimated 44488 PSMs with q<0.01 Iteration 8: Estimated 44489 PSMs with q<0.01 Iteration 9: Estimated 44489 PSMs with q<0.01 Iteration 10: Estimated 44489 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0116 0.0408 0.0137 retentiontime 0.0000 0.0000 0.0000 rank -0.2124 -0.1777 -0.1845 abs_ppm -0.1137 -0.0899 -0.1016 isotope_errors -0.8308 -0.5407 -0.4298 log10_evalue -0.0810 0.1083 0.5072 hyperscore 0.4791 0.4613 0.4157 delta_hyperscore 0.4376 0.5073 0.2423 matched_ion_num -0.5136 -0.4786 -0.5668 complementary_ions 0.0822 0.0007 0.0474 ion_series -0.0824 -0.0457 -0.0511 weighted_average_abs_fragment_ppm 0.3036 0.2098 0.3076 peptide_length 0.0000 0.0000 0.0000 ntt -0.1313 -0.1205 -0.1421 nmc 0.0000 0.0000 0.0000 charge_1 0.0413 0.0065 0.0309 charge_2 -0.0549 -0.0163 -0.0357 charge_3 0.0903 0.0664 0.0318 charge_4 -0.0143 -0.0129 -0.0129 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more 0.0249 -0.0211 -0.0169 15.9949M 0.5028 0.4885 0.4989 unweighted_spectral_entropy -0.5437 -0.4767 -0.4901 delta_RT_loess 2.2583 2.0422 2.0487 m0 Found 44458 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 47077 target PSMs and 2981 decoy PSMs. Calculating q values. Final list yields 44459 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 11.57 cpu seconds or 11 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-5_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-5_percolator_decoy_psms.tsv S22049-Arjun-5_edited.pin Percolator version 3.05.0, Build Date May 18 2020 02:35:01 Copyright (c) 2006-9 University of Washington. All rights reserved. Written by Lukas Käll (lukall@u.washington.edu) in the Department of Genome Sciences at the University of Washington. Issued command: D:\JAM\fragpipe\tools\percolator-305\percolator.exe --only-psms --no-terminate --post-processing-tdc --num-threads 7 --results-psms S22049-Arjun-5_percolator_target_psms.tsv --decoy-results-psms S22049-Arjun-5_percolator_decoy_psms.tsv S22049-Arjun-5_edited.pin Started Wed Mar 8 11:19:49 2023 Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10 Reading tab-delimited input from datafile S22049-Arjun-5_edited.pin Features: retentiontime rank abs_ppm isotope_errors log10_evalue hyperscore delta_hyperscore matched_ion_num complementary_ions ion_series weighted_average_abs_fragment_ppm peptide_length ntt nmc charge_1 charge_2 charge_3 charge_4 charge_5 charge_6 charge_7_or_more 15.9949M unweighted_spectral_entropy delta_RT_loess Found 64752 PSMs Concatenated search input detected and --post-processing-tdc flag set. Applying target-decoy competition on Percolator scores. Train/test set contains 60708 positives and 4044 negatives, size ratio=15.0119 and pi0=1 Selecting Cpos by cross-validation. Selecting Cneg by cross-validation. Split 1: Selected feature 23 as initial direction. Could separate 37312 training set positives with q<0.01 in that direction. Split 2: Selected feature 23 as initial direction. Could separate 37467 training set positives with q<0.01 in that direction. Split 3: Selected feature 23 as initial direction. Could separate 37381 training set positives with q<0.01 in that direction. Found 56065 test set positives with q<0.01 in initial direction Reading in data and feature calculation took 1.354 cpu seconds or 1 seconds wall clock time. ---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01 Iteration 1: Estimated 56929 PSMs with q<0.01 Iteration 2: Estimated 57163 PSMs with q<0.01 Iteration 3: Estimated 57319 PSMs with q<0.01 Iteration 4: Estimated 57379 PSMs with q<0.01 Iteration 5: Estimated 57398 PSMs with q<0.01 Iteration 6: Estimated 57404 PSMs with q<0.01 Iteration 7: Estimated 57407 PSMs with q<0.01 Iteration 8: Estimated 57407 PSMs with q<0.01 Iteration 9: Estimated 57409 PSMs with q<0.01 Iteration 10: Estimated 57408 PSMs with q<0.01 Learned normalized SVM weights for the 3 cross-validation splits: Split1 Split2 Split3 FeatureName 0.0751 0.0499 0.1266 retentiontime 0.0000 0.0000 0.0000 rank -0.2206 -0.2276 -0.2074 abs_ppm -0.0859 -0.1049 -0.1084 isotope_errors -0.5323 -0.6679 -0.5363 log10_evalue 0.2071 0.0426 0.1602 hyperscore 0.4568 0.3959 0.4503 delta_hyperscore 0.7238 1.0377 0.6958 matched_ion_num -0.5828 -0.6409 -0.5992 complementary_ions -0.1326 -0.2059 -0.0631 ion_series 0.0034 0.0089 -0.0234 weighted_average_abs_fragment_ppm 0.1323 0.1287 0.1090 peptide_length 0.0000 0.0000 0.0000 ntt -0.1088 -0.0889 -0.1018 nmc 0.0000 0.0000 0.0000 charge_1 -0.0037 0.0100 0.0064 charge_2 0.0025 -0.0145 -0.0073 charge_3 0.0088 0.0268 0.0049 charge_4 -0.0118 -0.0004 0.0006 charge_5 0.0000 0.0000 0.0000 charge_6 0.0000 0.0000 0.0000 charge_7_or_more -0.0652 -0.0583 -0.0517 15.9949M 0.4745 0.4734 0.5064 unweighted_spectral_entropy -0.5747 -0.5339 -0.5771 delta_RT_loess 2.1304 2.2879 2.1670 m0 Found 57419 test set PSMs with q<0.01. Selected best-scoring PSM per scan+expMass (target-decoy competition): 60708 target PSMs and 4044 decoy PSMs. Calculating q values. Final list yields 57421 target PSMs with q<0.01. Calculating posterior error probabilities (PEPs). Processing took 25.3 cpu seconds or 26 seconds wall clock time. Process 'Percolator' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-21.pin S22049-Arjun-21 S22049-Arjun-21_percolator_target_psms.tsv S22049-Arjun-21_percolator_decoy_psms.tsv interact-S22049-Arjun-21 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21\S22049-Arjun-21_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21\S22049-Arjun-21_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-120.pin S22049-Arjun-120 S22049-Arjun-120_percolator_target_psms.tsv S22049-Arjun-120_percolator_decoy_psms.tsv interact-S22049-Arjun-120 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120\S22049-Arjun-120_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120\S22049-Arjun-120_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-34.pin S22049-Arjun-34 S22049-Arjun-34_percolator_target_psms.tsv S22049-Arjun-34_percolator_decoy_psms.tsv interact-S22049-Arjun-34 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34\S22049-Arjun-34_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34\S22049-Arjun-34_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-75.pin S22049-Arjun-75 S22049-Arjun-75_percolator_target_psms.tsv S22049-Arjun-75_percolator_decoy_psms.tsv interact-S22049-Arjun-75 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75\S22049-Arjun-75_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75\S22049-Arjun-75_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-116.pin S22049-Arjun-116 S22049-Arjun-116_percolator_target_psms.tsv S22049-Arjun-116_percolator_decoy_psms.tsv interact-S22049-Arjun-116 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116\S22049-Arjun-116_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116\S22049-Arjun-116_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-47.pin S22049-Arjun-47 S22049-Arjun-47_percolator_target_psms.tsv S22049-Arjun-47_percolator_decoy_psms.tsv interact-S22049-Arjun-47 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47\S22049-Arjun-47_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47\S22049-Arjun-47_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-90.pin S22049-Arjun-90 S22049-Arjun-90_percolator_target_psms.tsv S22049-Arjun-90_percolator_decoy_psms.tsv interact-S22049-Arjun-90 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90\S22049-Arjun-90_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90\S22049-Arjun-90_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-135.pin S22049-Arjun-135 S22049-Arjun-135_percolator_target_psms.tsv S22049-Arjun-135_percolator_decoy_psms.tsv interact-S22049-Arjun-135 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135\S22049-Arjun-135_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135\S22049-Arjun-135_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-131.pin S22049-Arjun-131 S22049-Arjun-131_percolator_target_psms.tsv S22049-Arjun-131_percolator_decoy_psms.tsv interact-S22049-Arjun-131 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131\S22049-Arjun-131_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131\S22049-Arjun-131_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-108.pin S22049-Arjun-108 S22049-Arjun-108_percolator_target_psms.tsv S22049-Arjun-108_percolator_decoy_psms.tsv interact-S22049-Arjun-108 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108\S22049-Arjun-108_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108\S22049-Arjun-108_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-66-2nd.pin S22049-Arjun-66-2nd S22049-Arjun-66-2nd_percolator_target_psms.tsv S22049-Arjun-66-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-66-2nd DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd\S22049-Arjun-66-2nd_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd\S22049-Arjun-66-2nd_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-127.pin S22049-Arjun-127 S22049-Arjun-127_percolator_target_psms.tsv S22049-Arjun-127_percolator_decoy_psms.tsv interact-S22049-Arjun-127 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127\S22049-Arjun-127_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127\S22049-Arjun-127_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-58-2nd.pin S22049-Arjun-58-2nd S22049-Arjun-58-2nd_percolator_target_psms.tsv S22049-Arjun-58-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-58-2nd DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd\S22049-Arjun-58-2nd_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd\S22049-Arjun-58-2nd_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-53.pin S22049-Arjun-53 S22049-Arjun-53_percolator_target_psms.tsv S22049-Arjun-53_percolator_decoy_psms.tsv interact-S22049-Arjun-53 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53\S22049-Arjun-53_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53\S22049-Arjun-53_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-7.pin S22049-Arjun-7 S22049-Arjun-7_percolator_target_psms.tsv S22049-Arjun-7_percolator_decoy_psms.tsv interact-S22049-Arjun-7 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7\S22049-Arjun-7_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7\S22049-Arjun-7_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-101.pin S22049-Arjun-101 S22049-Arjun-101_percolator_target_psms.tsv S22049-Arjun-101_percolator_decoy_psms.tsv interact-S22049-Arjun-101 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101\S22049-Arjun-101_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101\S22049-Arjun-101_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-56.pin S22049-Arjun-56 S22049-Arjun-56_percolator_target_psms.tsv S22049-Arjun-56_percolator_decoy_psms.tsv interact-S22049-Arjun-56 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56\S22049-Arjun-56_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56\S22049-Arjun-56_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-119.pin S22049-Arjun-119 S22049-Arjun-119_percolator_target_psms.tsv S22049-Arjun-119_percolator_decoy_psms.tsv interact-S22049-Arjun-119 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119\S22049-Arjun-119_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119\S22049-Arjun-119_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-29.pin S22049-Arjun-29 S22049-Arjun-29_percolator_target_psms.tsv S22049-Arjun-29_percolator_decoy_psms.tsv interact-S22049-Arjun-29 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29\S22049-Arjun-29_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29\S22049-Arjun-29_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-143.pin S22049-Arjun-143 S22049-Arjun-143_percolator_target_psms.tsv S22049-Arjun-143_percolator_decoy_psms.tsv interact-S22049-Arjun-143 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143\S22049-Arjun-143_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143\S22049-Arjun-143_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-43.pin S22049-Arjun-43 S22049-Arjun-43_percolator_target_psms.tsv S22049-Arjun-43_percolator_decoy_psms.tsv interact-S22049-Arjun-43 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43\S22049-Arjun-43_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43\S22049-Arjun-43_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-12.pin S22049-Arjun-12 S22049-Arjun-12_percolator_target_psms.tsv S22049-Arjun-12_percolator_decoy_psms.tsv interact-S22049-Arjun-12 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12\S22049-Arjun-12_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12\S22049-Arjun-12_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-97.pin S22049-Arjun-97 S22049-Arjun-97_percolator_target_psms.tsv S22049-Arjun-97_percolator_decoy_psms.tsv interact-S22049-Arjun-97 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97\S22049-Arjun-97_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97\S22049-Arjun-97_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-16.pin S22049-Arjun-16 S22049-Arjun-16_percolator_target_psms.tsv S22049-Arjun-16_percolator_decoy_psms.tsv interact-S22049-Arjun-16 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16\S22049-Arjun-16_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16\S22049-Arjun-16_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-93.pin S22049-Arjun-93 S22049-Arjun-93_percolator_target_psms.tsv S22049-Arjun-93_percolator_decoy_psms.tsv interact-S22049-Arjun-93 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93\S22049-Arjun-93_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93\S22049-Arjun-93_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-71.pin S22049-Arjun-71 S22049-Arjun-71_percolator_target_psms.tsv S22049-Arjun-71_percolator_decoy_psms.tsv interact-S22049-Arjun-71 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71\S22049-Arjun-71_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71\S22049-Arjun-71_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-25.pin S22049-Arjun-25 S22049-Arjun-25_percolator_target_psms.tsv S22049-Arjun-25_percolator_decoy_psms.tsv interact-S22049-Arjun-25 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25\S22049-Arjun-25_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25\S22049-Arjun-25_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-104.pin S22049-Arjun-104 S22049-Arjun-104_percolator_target_psms.tsv S22049-Arjun-104_percolator_decoy_psms.tsv interact-S22049-Arjun-104 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104\S22049-Arjun-104_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104\S22049-Arjun-104_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-30.pin S22049-Arjun-30 S22049-Arjun-30_percolator_target_psms.tsv S22049-Arjun-30_percolator_decoy_psms.tsv interact-S22049-Arjun-30 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30\S22049-Arjun-30_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30\S22049-Arjun-30_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-65-2nd.pin S22049-Arjun-65-2nd S22049-Arjun-65-2nd_percolator_target_psms.tsv S22049-Arjun-65-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-65-2nd DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd\S22049-Arjun-65-2nd_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd\S22049-Arjun-65-2nd_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-79.pin S22049-Arjun-79 S22049-Arjun-79_percolator_target_psms.tsv S22049-Arjun-79_percolator_decoy_psms.tsv interact-S22049-Arjun-79 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79\S22049-Arjun-79_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79\S22049-Arjun-79_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-38.pin S22049-Arjun-38 S22049-Arjun-38_percolator_target_psms.tsv S22049-Arjun-38_percolator_decoy_psms.tsv interact-S22049-Arjun-38 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38\S22049-Arjun-38_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38\S22049-Arjun-38_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-88.pin S22049-Arjun-88 S22049-Arjun-88_percolator_target_psms.tsv S22049-Arjun-88_percolator_decoy_psms.tsv interact-S22049-Arjun-88 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88\S22049-Arjun-88_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88\S22049-Arjun-88_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-142.pin S22049-Arjun-142 S22049-Arjun-142_percolator_target_psms.tsv S22049-Arjun-142_percolator_decoy_psms.tsv interact-S22049-Arjun-142 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142\S22049-Arjun-142_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142\S22049-Arjun-142_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-80.pin S22049-Arjun-80 S22049-Arjun-80_percolator_target_psms.tsv S22049-Arjun-80_percolator_decoy_psms.tsv interact-S22049-Arjun-80 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80\S22049-Arjun-80_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80\S22049-Arjun-80_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-105.pin S22049-Arjun-105 S22049-Arjun-105_percolator_target_psms.tsv S22049-Arjun-105_percolator_decoy_psms.tsv interact-S22049-Arjun-105 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105\S22049-Arjun-105_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105\S22049-Arjun-105_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-1.pin S22049-Arjun-1 S22049-Arjun-1_percolator_target_psms.tsv S22049-Arjun-1_percolator_decoy_psms.tsv interact-S22049-Arjun-1 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\S22049-Arjun-1_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\S22049-Arjun-1_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-22.pin S22049-Arjun-22 S22049-Arjun-22_percolator_target_psms.tsv S22049-Arjun-22_percolator_decoy_psms.tsv interact-S22049-Arjun-22 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22\S22049-Arjun-22_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22\S22049-Arjun-22_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-89.pin S22049-Arjun-89 S22049-Arjun-89_percolator_target_psms.tsv S22049-Arjun-89_percolator_decoy_psms.tsv interact-S22049-Arjun-89 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89\S22049-Arjun-89_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89\S22049-Arjun-89_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-37.pin S22049-Arjun-37 S22049-Arjun-37_percolator_target_psms.tsv S22049-Arjun-37_percolator_decoy_psms.tsv interact-S22049-Arjun-37 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37\S22049-Arjun-37_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37\S22049-Arjun-37_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-134.pin S22049-Arjun-134 S22049-Arjun-134_percolator_target_psms.tsv S22049-Arjun-134_percolator_decoy_psms.tsv interact-S22049-Arjun-134 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134\S22049-Arjun-134_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134\S22049-Arjun-134_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-74.pin S22049-Arjun-74 S22049-Arjun-74_percolator_target_psms.tsv S22049-Arjun-74_percolator_decoy_psms.tsv interact-S22049-Arjun-74 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74\S22049-Arjun-74_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74\S22049-Arjun-74_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-48.pin S22049-Arjun-48 S22049-Arjun-48_percolator_target_psms.tsv S22049-Arjun-48_percolator_decoy_psms.tsv interact-S22049-Arjun-48 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48\S22049-Arjun-48_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48\S22049-Arjun-48_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-121.pin S22049-Arjun-121 S22049-Arjun-121_percolator_target_psms.tsv S22049-Arjun-121_percolator_decoy_psms.tsv interact-S22049-Arjun-121 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121\S22049-Arjun-121_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121\S22049-Arjun-121_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-6.pin S22049-Arjun-6 S22049-Arjun-6_percolator_target_psms.tsv S22049-Arjun-6_percolator_decoy_psms.tsv interact-S22049-Arjun-6 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6\S22049-Arjun-6_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6\S22049-Arjun-6_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-140.pin S22049-Arjun-140 S22049-Arjun-140_percolator_target_psms.tsv S22049-Arjun-140_percolator_decoy_psms.tsv interact-S22049-Arjun-140 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140\S22049-Arjun-140_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140\S22049-Arjun-140_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-11.pin S22049-Arjun-11 S22049-Arjun-11_percolator_target_psms.tsv S22049-Arjun-11_percolator_decoy_psms.tsv interact-S22049-Arjun-11 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11\S22049-Arjun-11_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11\S22049-Arjun-11_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-84-2nd.pin S22049-Arjun-84-2nd S22049-Arjun-84-2nd_percolator_target_psms.tsv S22049-Arjun-84-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-84-2nd DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd\S22049-Arjun-84-2nd_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd\S22049-Arjun-84-2nd_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-132.pin S22049-Arjun-132 S22049-Arjun-132_percolator_target_psms.tsv S22049-Arjun-132_percolator_decoy_psms.tsv interact-S22049-Arjun-132 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132\S22049-Arjun-132_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132\S22049-Arjun-132_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-52.pin S22049-Arjun-52 S22049-Arjun-52_percolator_target_psms.tsv S22049-Arjun-52_percolator_decoy_psms.tsv interact-S22049-Arjun-52 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52\S22049-Arjun-52_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52\S22049-Arjun-52_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-15.pin S22049-Arjun-15 S22049-Arjun-15_percolator_target_psms.tsv S22049-Arjun-15_percolator_decoy_psms.tsv interact-S22049-Arjun-15 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15\S22049-Arjun-15_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15\S22049-Arjun-15_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-81.pin S22049-Arjun-81 S22049-Arjun-81_percolator_target_psms.tsv S22049-Arjun-81_percolator_decoy_psms.tsv interact-S22049-Arjun-81 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81\S22049-Arjun-81_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81\S22049-Arjun-81_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-138.pin S22049-Arjun-138 S22049-Arjun-138_percolator_target_psms.tsv S22049-Arjun-138_percolator_decoy_psms.tsv interact-S22049-Arjun-138 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138\S22049-Arjun-138_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138\S22049-Arjun-138_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-125.pin S22049-Arjun-125 S22049-Arjun-125_percolator_target_psms.tsv S22049-Arjun-125_percolator_decoy_psms.tsv interact-S22049-Arjun-125 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125\S22049-Arjun-125_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125\S22049-Arjun-125_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-67.pin S22049-Arjun-67 S22049-Arjun-67_percolator_target_psms.tsv S22049-Arjun-67_percolator_decoy_psms.tsv interact-S22049-Arjun-67 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67\S22049-Arjun-67_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67\S22049-Arjun-67_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-44.pin S22049-Arjun-44 S22049-Arjun-44_percolator_target_psms.tsv S22049-Arjun-44_percolator_decoy_psms.tsv interact-S22049-Arjun-44 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44\S22049-Arjun-44_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44\S22049-Arjun-44_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-4.pin S22049-Arjun-4 S22049-Arjun-4_percolator_target_psms.tsv S22049-Arjun-4_percolator_decoy_psms.tsv interact-S22049-Arjun-4 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4\S22049-Arjun-4_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4\S22049-Arjun-4_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-112.pin S22049-Arjun-112 S22049-Arjun-112_percolator_target_psms.tsv S22049-Arjun-112_percolator_decoy_psms.tsv interact-S22049-Arjun-112 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112\S22049-Arjun-112_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112\S22049-Arjun-112_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-40.pin S22049-Arjun-40 S22049-Arjun-40_percolator_target_psms.tsv S22049-Arjun-40_percolator_decoy_psms.tsv interact-S22049-Arjun-40 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40\S22049-Arjun-40_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40\S22049-Arjun-40_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-19.pin S22049-Arjun-19 S22049-Arjun-19_percolator_target_psms.tsv S22049-Arjun-19_percolator_decoy_psms.tsv interact-S22049-Arjun-19 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19\S22049-Arjun-19_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19\S22049-Arjun-19_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-96.pin S22049-Arjun-96 S22049-Arjun-96_percolator_target_psms.tsv S22049-Arjun-96_percolator_decoy_psms.tsv interact-S22049-Arjun-96 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96\S22049-Arjun-96_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96\S22049-Arjun-96_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-92.pin S22049-Arjun-92 S22049-Arjun-92_percolator_target_psms.tsv S22049-Arjun-92_percolator_decoy_psms.tsv interact-S22049-Arjun-92 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92\S22049-Arjun-92_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92\S22049-Arjun-92_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-85.pin S22049-Arjun-85 S22049-Arjun-85_percolator_target_psms.tsv S22049-Arjun-85_percolator_decoy_psms.tsv interact-S22049-Arjun-85 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85\S22049-Arjun-85_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85\S22049-Arjun-85_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-26.pin S22049-Arjun-26 S22049-Arjun-26_percolator_target_psms.tsv S22049-Arjun-26_percolator_decoy_psms.tsv interact-S22049-Arjun-26 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26\S22049-Arjun-26_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26\S22049-Arjun-26_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-136.pin S22049-Arjun-136 S22049-Arjun-136_percolator_target_psms.tsv S22049-Arjun-136_percolator_decoy_psms.tsv interact-S22049-Arjun-136 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136\S22049-Arjun-136_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136\S22049-Arjun-136_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-70.pin S22049-Arjun-70 S22049-Arjun-70_percolator_target_psms.tsv S22049-Arjun-70_percolator_decoy_psms.tsv interact-S22049-Arjun-70 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70\S22049-Arjun-70_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70\S22049-Arjun-70_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-123.pin S22049-Arjun-123 S22049-Arjun-123_percolator_target_psms.tsv S22049-Arjun-123_percolator_decoy_psms.tsv interact-S22049-Arjun-123 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\S22049-Arjun-123_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\S22049-Arjun-123_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-33.pin S22049-Arjun-33 S22049-Arjun-33_percolator_target_psms.tsv S22049-Arjun-33_percolator_decoy_psms.tsv interact-S22049-Arjun-33 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33\S22049-Arjun-33_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33\S22049-Arjun-33_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-78.pin S22049-Arjun-78 S22049-Arjun-78_percolator_target_psms.tsv S22049-Arjun-78_percolator_decoy_psms.tsv interact-S22049-Arjun-78 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78\S22049-Arjun-78_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78\S22049-Arjun-78_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-110.pin S22049-Arjun-110 S22049-Arjun-110_percolator_target_psms.tsv S22049-Arjun-110_percolator_decoy_psms.tsv interact-S22049-Arjun-110 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110\S22049-Arjun-110_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110\S22049-Arjun-110_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-49.pin S22049-Arjun-49 S22049-Arjun-49_percolator_target_psms.tsv S22049-Arjun-49_percolator_decoy_psms.tsv interact-S22049-Arjun-49 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49\S22049-Arjun-49_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49\S22049-Arjun-49_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-129.pin S22049-Arjun-129 S22049-Arjun-129_percolator_target_psms.tsv S22049-Arjun-129_percolator_decoy_psms.tsv interact-S22049-Arjun-129 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129\S22049-Arjun-129_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129\S22049-Arjun-129_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-77.pin S22049-Arjun-77 S22049-Arjun-77_percolator_target_psms.tsv S22049-Arjun-77_percolator_decoy_psms.tsv interact-S22049-Arjun-77 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77\S22049-Arjun-77_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77\S22049-Arjun-77_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-36.pin S22049-Arjun-36 S22049-Arjun-36_percolator_target_psms.tsv S22049-Arjun-36_percolator_decoy_psms.tsv interact-S22049-Arjun-36 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36\S22049-Arjun-36_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36\S22049-Arjun-36_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-103.pin S22049-Arjun-103 S22049-Arjun-103_percolator_target_psms.tsv S22049-Arjun-103_percolator_decoy_psms.tsv interact-S22049-Arjun-103 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103\S22049-Arjun-103_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103\S22049-Arjun-103_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-2.pin S22049-Arjun-2 S22049-Arjun-2_percolator_target_psms.tsv S22049-Arjun-2_percolator_decoy_psms.tsv interact-S22049-Arjun-2 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2\S22049-Arjun-2_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2\S22049-Arjun-2_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-51.pin S22049-Arjun-51 S22049-Arjun-51_percolator_target_psms.tsv S22049-Arjun-51_percolator_decoy_psms.tsv interact-S22049-Arjun-51 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51\S22049-Arjun-51_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51\S22049-Arjun-51_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-60-2nd.pin S22049-Arjun-60-2nd S22049-Arjun-60-2nd_percolator_target_psms.tsv S22049-Arjun-60-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-60-2nd DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd\S22049-Arjun-60-2nd_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd\S22049-Arjun-60-2nd_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-10.pin S22049-Arjun-10 S22049-Arjun-10_percolator_target_psms.tsv S22049-Arjun-10_percolator_decoy_psms.tsv interact-S22049-Arjun-10 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10\S22049-Arjun-10_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10\S22049-Arjun-10_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-45.pin S22049-Arjun-45 S22049-Arjun-45_percolator_target_psms.tsv S22049-Arjun-45_percolator_decoy_psms.tsv interact-S22049-Arjun-45 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45\S22049-Arjun-45_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45\S22049-Arjun-45_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-114.pin S22049-Arjun-114 S22049-Arjun-114_percolator_target_psms.tsv S22049-Arjun-114_percolator_decoy_psms.tsv interact-S22049-Arjun-114 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114\S22049-Arjun-114_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114\S22049-Arjun-114_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-133.pin S22049-Arjun-133 S22049-Arjun-133_percolator_target_psms.tsv S22049-Arjun-133_percolator_decoy_psms.tsv interact-S22049-Arjun-133 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133\S22049-Arjun-133_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133\S22049-Arjun-133_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-55.pin S22049-Arjun-55 S22049-Arjun-55_percolator_target_psms.tsv S22049-Arjun-55_percolator_decoy_psms.tsv interact-S22049-Arjun-55 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55\S22049-Arjun-55_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55\S22049-Arjun-55_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-41.pin S22049-Arjun-41 S22049-Arjun-41_percolator_target_psms.tsv S22049-Arjun-41_percolator_decoy_psms.tsv interact-S22049-Arjun-41 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41\S22049-Arjun-41_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41\S22049-Arjun-41_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-106.pin S22049-Arjun-106 S22049-Arjun-106_percolator_target_psms.tsv S22049-Arjun-106_percolator_decoy_psms.tsv interact-S22049-Arjun-106 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106\S22049-Arjun-106_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106\S22049-Arjun-106_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-62-2nd.pin S22049-Arjun-62-2nd S22049-Arjun-62-2nd_percolator_target_psms.tsv S22049-Arjun-62-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-62-2nd DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd\S22049-Arjun-62-2nd_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd\S22049-Arjun-62-2nd_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-130.pin S22049-Arjun-130 S22049-Arjun-130_percolator_target_psms.tsv S22049-Arjun-130_percolator_decoy_psms.tsv interact-S22049-Arjun-130 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130\S22049-Arjun-130_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130\S22049-Arjun-130_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-107.pin S22049-Arjun-107 S22049-Arjun-107_percolator_target_psms.tsv S22049-Arjun-107_percolator_decoy_psms.tsv interact-S22049-Arjun-107 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107\S22049-Arjun-107_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107\S22049-Arjun-107_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-68.pin S22049-Arjun-68 S22049-Arjun-68_percolator_target_psms.tsv S22049-Arjun-68_percolator_decoy_psms.tsv interact-S22049-Arjun-68 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68\S22049-Arjun-68_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68\S22049-Arjun-68_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-14.pin S22049-Arjun-14 S22049-Arjun-14_percolator_target_psms.tsv S22049-Arjun-14_percolator_decoy_psms.tsv interact-S22049-Arjun-14 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14\S22049-Arjun-14_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14\S22049-Arjun-14_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-144.pin S22049-Arjun-144 S22049-Arjun-144_percolator_target_psms.tsv S22049-Arjun-144_percolator_decoy_psms.tsv interact-S22049-Arjun-144 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144\S22049-Arjun-144_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144\S22049-Arjun-144_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-8.pin S22049-Arjun-8 S22049-Arjun-8_percolator_target_psms.tsv S22049-Arjun-8_percolator_decoy_psms.tsv interact-S22049-Arjun-8 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8\S22049-Arjun-8_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8\S22049-Arjun-8_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-99.pin S22049-Arjun-99 S22049-Arjun-99_percolator_target_psms.tsv S22049-Arjun-99_percolator_decoy_psms.tsv interact-S22049-Arjun-99 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99\S22049-Arjun-99_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99\S22049-Arjun-99_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-18.pin S22049-Arjun-18 S22049-Arjun-18_percolator_target_psms.tsv S22049-Arjun-18_percolator_decoy_psms.tsv interact-S22049-Arjun-18 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18\S22049-Arjun-18_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18\S22049-Arjun-18_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-95.pin S22049-Arjun-95 S22049-Arjun-95_percolator_target_psms.tsv S22049-Arjun-95_percolator_decoy_psms.tsv interact-S22049-Arjun-95 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95\S22049-Arjun-95_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95\S22049-Arjun-95_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-117.pin S22049-Arjun-117 S22049-Arjun-117_percolator_target_psms.tsv S22049-Arjun-117_percolator_decoy_psms.tsv interact-S22049-Arjun-117 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117\S22049-Arjun-117_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117\S22049-Arjun-117_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-91.pin S22049-Arjun-91 S22049-Arjun-91_percolator_target_psms.tsv S22049-Arjun-91_percolator_decoy_psms.tsv interact-S22049-Arjun-91 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91\S22049-Arjun-91_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91\S22049-Arjun-91_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-86.pin S22049-Arjun-86 S22049-Arjun-86_percolator_target_psms.tsv S22049-Arjun-86_percolator_decoy_psms.tsv interact-S22049-Arjun-86 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86\S22049-Arjun-86_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86\S22049-Arjun-86_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-32.pin S22049-Arjun-32 S22049-Arjun-32_percolator_target_psms.tsv S22049-Arjun-32_percolator_decoy_psms.tsv interact-S22049-Arjun-32 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32\S22049-Arjun-32_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32\S22049-Arjun-32_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-141.pin S22049-Arjun-141 S22049-Arjun-141_percolator_target_psms.tsv S22049-Arjun-141_percolator_decoy_psms.tsv interact-S22049-Arjun-141 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141\S22049-Arjun-141_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141\S22049-Arjun-141_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-73.pin S22049-Arjun-73 S22049-Arjun-73_percolator_target_psms.tsv S22049-Arjun-73_percolator_decoy_psms.tsv interact-S22049-Arjun-73 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73\S22049-Arjun-73_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73\S22049-Arjun-73_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-23.pin S22049-Arjun-23 S22049-Arjun-23_percolator_target_psms.tsv S22049-Arjun-23_percolator_decoy_psms.tsv interact-S22049-Arjun-23 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23\S22049-Arjun-23_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23\S22049-Arjun-23_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-118.pin S22049-Arjun-118 S22049-Arjun-118_percolator_target_psms.tsv S22049-Arjun-118_percolator_decoy_psms.tsv interact-S22049-Arjun-118 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118\S22049-Arjun-118_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118\S22049-Arjun-118_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-61-2nd.pin S22049-Arjun-61-2nd S22049-Arjun-61-2nd_percolator_target_psms.tsv S22049-Arjun-61-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-61-2nd DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd\S22049-Arjun-61-2nd_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd\S22049-Arjun-61-2nd_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-9.pin S22049-Arjun-9 S22049-Arjun-9_percolator_target_psms.tsv S22049-Arjun-9_percolator_decoy_psms.tsv interact-S22049-Arjun-9 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9\S22049-Arjun-9_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9\S22049-Arjun-9_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-27.pin S22049-Arjun-27 S22049-Arjun-27_percolator_target_psms.tsv S22049-Arjun-27_percolator_decoy_psms.tsv interact-S22049-Arjun-27 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27\S22049-Arjun-27_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27\S22049-Arjun-27_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-82.pin S22049-Arjun-82 S22049-Arjun-82_percolator_target_psms.tsv S22049-Arjun-82_percolator_decoy_psms.tsv interact-S22049-Arjun-82 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82\S22049-Arjun-82_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82\S22049-Arjun-82_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-63-2nd.pin S22049-Arjun-63-2nd S22049-Arjun-63-2nd_percolator_target_psms.tsv S22049-Arjun-63-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-63-2nd DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd\S22049-Arjun-63-2nd_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd\S22049-Arjun-63-2nd_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-115.pin S22049-Arjun-115 S22049-Arjun-115_percolator_target_psms.tsv S22049-Arjun-115_percolator_decoy_psms.tsv interact-S22049-Arjun-115 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115\S22049-Arjun-115_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115\S22049-Arjun-115_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-20.pin S22049-Arjun-20 S22049-Arjun-20_percolator_target_psms.tsv S22049-Arjun-20_percolator_decoy_psms.tsv interact-S22049-Arjun-20 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20\S22049-Arjun-20_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20\S22049-Arjun-20_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-76.pin S22049-Arjun-76 S22049-Arjun-76_percolator_target_psms.tsv S22049-Arjun-76_percolator_decoy_psms.tsv interact-S22049-Arjun-76 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76\S22049-Arjun-76_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76\S22049-Arjun-76_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-102.pin S22049-Arjun-102 S22049-Arjun-102_percolator_target_psms.tsv S22049-Arjun-102_percolator_decoy_psms.tsv interact-S22049-Arjun-102 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102\S22049-Arjun-102_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102\S22049-Arjun-102_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-35.pin S22049-Arjun-35 S22049-Arjun-35_percolator_target_psms.tsv S22049-Arjun-35_percolator_decoy_psms.tsv interact-S22049-Arjun-35 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35\S22049-Arjun-35_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35\S22049-Arjun-35_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-113.pin S22049-Arjun-113 S22049-Arjun-113_percolator_target_psms.tsv S22049-Arjun-113_percolator_decoy_psms.tsv interact-S22049-Arjun-113 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113\S22049-Arjun-113_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113\S22049-Arjun-113_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-46.pin S22049-Arjun-46 S22049-Arjun-46_percolator_target_psms.tsv S22049-Arjun-46_percolator_decoy_psms.tsv interact-S22049-Arjun-46 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46\S22049-Arjun-46_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46\S22049-Arjun-46_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-100.pin S22049-Arjun-100 S22049-Arjun-100_percolator_target_psms.tsv S22049-Arjun-100_percolator_decoy_psms.tsv interact-S22049-Arjun-100 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100\S22049-Arjun-100_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100\S22049-Arjun-100_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-109.pin S22049-Arjun-109 S22049-Arjun-109_percolator_target_psms.tsv S22049-Arjun-109_percolator_decoy_psms.tsv interact-S22049-Arjun-109 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109\S22049-Arjun-109_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109\S22049-Arjun-109_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-3.pin S22049-Arjun-3 S22049-Arjun-3_percolator_target_psms.tsv S22049-Arjun-3_percolator_decoy_psms.tsv interact-S22049-Arjun-3 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3\S22049-Arjun-3_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3\S22049-Arjun-3_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-50.pin S22049-Arjun-50 S22049-Arjun-50_percolator_target_psms.tsv S22049-Arjun-50_percolator_decoy_psms.tsv interact-S22049-Arjun-50 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50\S22049-Arjun-50_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50\S22049-Arjun-50_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-57.pin S22049-Arjun-57 S22049-Arjun-57_percolator_target_psms.tsv S22049-Arjun-57_percolator_decoy_psms.tsv interact-S22049-Arjun-57 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57\S22049-Arjun-57_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57\S22049-Arjun-57_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-128.pin S22049-Arjun-128 S22049-Arjun-128_percolator_target_psms.tsv S22049-Arjun-128_percolator_decoy_psms.tsv interact-S22049-Arjun-128 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128\S22049-Arjun-128_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128\S22049-Arjun-128_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-54.pin S22049-Arjun-54 S22049-Arjun-54_percolator_target_psms.tsv S22049-Arjun-54_percolator_decoy_psms.tsv interact-S22049-Arjun-54 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54\S22049-Arjun-54_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54\S22049-Arjun-54_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-111.pin S22049-Arjun-111 S22049-Arjun-111_percolator_target_psms.tsv S22049-Arjun-111_percolator_decoy_psms.tsv interact-S22049-Arjun-111 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111\S22049-Arjun-111_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111\S22049-Arjun-111_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-64-2nd.pin S22049-Arjun-64-2nd S22049-Arjun-64-2nd_percolator_target_psms.tsv S22049-Arjun-64-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-64-2nd DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd\S22049-Arjun-64-2nd_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd\S22049-Arjun-64-2nd_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-13.pin S22049-Arjun-13 S22049-Arjun-13_percolator_target_psms.tsv S22049-Arjun-13_percolator_decoy_psms.tsv interact-S22049-Arjun-13 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13\S22049-Arjun-13_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13\S22049-Arjun-13_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-98.pin S22049-Arjun-98 S22049-Arjun-98_percolator_target_psms.tsv S22049-Arjun-98_percolator_decoy_psms.tsv interact-S22049-Arjun-98 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98\S22049-Arjun-98_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98\S22049-Arjun-98_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-139.pin S22049-Arjun-139 S22049-Arjun-139_percolator_target_psms.tsv S22049-Arjun-139_percolator_decoy_psms.tsv interact-S22049-Arjun-139 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139\S22049-Arjun-139_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139\S22049-Arjun-139_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-42.pin S22049-Arjun-42 S22049-Arjun-42_percolator_target_psms.tsv S22049-Arjun-42_percolator_decoy_psms.tsv interact-S22049-Arjun-42 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42\S22049-Arjun-42_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42\S22049-Arjun-42_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-69.pin S22049-Arjun-69 S22049-Arjun-69_percolator_target_psms.tsv S22049-Arjun-69_percolator_decoy_psms.tsv interact-S22049-Arjun-69 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69\S22049-Arjun-69_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69\S22049-Arjun-69_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-126.pin S22049-Arjun-126 S22049-Arjun-126_percolator_target_psms.tsv S22049-Arjun-126_percolator_decoy_psms.tsv interact-S22049-Arjun-126 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126\S22049-Arjun-126_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126\S22049-Arjun-126_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-17.pin S22049-Arjun-17 S22049-Arjun-17_percolator_target_psms.tsv S22049-Arjun-17_percolator_decoy_psms.tsv interact-S22049-Arjun-17 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17\S22049-Arjun-17_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17\S22049-Arjun-17_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-94.pin S22049-Arjun-94 S22049-Arjun-94_percolator_target_psms.tsv S22049-Arjun-94_percolator_decoy_psms.tsv interact-S22049-Arjun-94 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94\S22049-Arjun-94_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94\S22049-Arjun-94_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-59-2nd.pin S22049-Arjun-59-2nd S22049-Arjun-59-2nd_percolator_target_psms.tsv S22049-Arjun-59-2nd_percolator_decoy_psms.tsv interact-S22049-Arjun-59-2nd DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd\S22049-Arjun-59-2nd_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd\S22049-Arjun-59-2nd_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-31.pin S22049-Arjun-31 S22049-Arjun-31_percolator_target_psms.tsv S22049-Arjun-31_percolator_decoy_psms.tsv interact-S22049-Arjun-31 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31\S22049-Arjun-31_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31\S22049-Arjun-31_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-122.pin S22049-Arjun-122 S22049-Arjun-122_percolator_target_psms.tsv S22049-Arjun-122_percolator_decoy_psms.tsv interact-S22049-Arjun-122 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122\S22049-Arjun-122_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122\S22049-Arjun-122_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-24.pin S22049-Arjun-24 S22049-Arjun-24_percolator_target_psms.tsv S22049-Arjun-24_percolator_decoy_psms.tsv interact-S22049-Arjun-24 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24\S22049-Arjun-24_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24\S22049-Arjun-24_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-72.pin S22049-Arjun-72 S22049-Arjun-72_percolator_target_psms.tsv S22049-Arjun-72_percolator_decoy_psms.tsv interact-S22049-Arjun-72 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72\S22049-Arjun-72_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72\S22049-Arjun-72_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-39.pin S22049-Arjun-39 S22049-Arjun-39_percolator_target_psms.tsv S22049-Arjun-39_percolator_decoy_psms.tsv interact-S22049-Arjun-39 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39\S22049-Arjun-39_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39\S22049-Arjun-39_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-28.pin S22049-Arjun-28 S22049-Arjun-28_percolator_target_psms.tsv S22049-Arjun-28_percolator_decoy_psms.tsv interact-S22049-Arjun-28 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28\S22049-Arjun-28_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28\S22049-Arjun-28_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-87.pin S22049-Arjun-87 S22049-Arjun-87_percolator_target_psms.tsv S22049-Arjun-87_percolator_decoy_psms.tsv interact-S22049-Arjun-87 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87\S22049-Arjun-87_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87\S22049-Arjun-87_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-83.pin S22049-Arjun-83 S22049-Arjun-83_percolator_target_psms.tsv S22049-Arjun-83_percolator_decoy_psms.tsv interact-S22049-Arjun-83 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83\S22049-Arjun-83_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83\S22049-Arjun-83_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-137.pin S22049-Arjun-137 S22049-Arjun-137_percolator_target_psms.tsv S22049-Arjun-137_percolator_decoy_psms.tsv interact-S22049-Arjun-137 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137\S22049-Arjun-137_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137\S22049-Arjun-137_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Convert to pepxml [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib/* com.dmtavt.fragpipe.tools.percolator.PercolatorOutputToPepXML S22049-Arjun-5.pin S22049-Arjun-5 S22049-Arjun-5_percolator_target_psms.tsv S22049-Arjun-5_percolator_decoy_psms.tsv interact-S22049-Arjun-5 DDA 0.5 Process 'Percolator: Convert to pepxml' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5\S22049-Arjun-5_percolator_target_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 Percolator: Delete temp D:\JAM\fragpipe\jre\bin\java.exe -cp D:\JAM\fragpipe\lib\fragpipe-19.1.jar com.github.chhh.utils.FileDelete D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5\S22049-Arjun-5_percolator_decoy_psms.tsv Process 'Percolator: Delete temp' finished, exit code: 0 ProteinProphet [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe proteinprophet --maxppmdiff 2000000 --output combined D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\filelist_proteinprophet.txt INFO[11:31:50] Executing ProteinProphet v4.8.1 ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the original Perl by A. Keller (TPP v6.0.0-rc15 Noctilucent, Build 202105101442-exported (Windows_NT-x86_64)) (no FPKM) (no groups) (using degen pep info) Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\interact-S22049-Arjun-1.pep.xml... ...read in 0 1+, 41075 2+, 11330 3+, 248 4+, 3 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10\interact-S22049-Arjun-10.pep.xml... ...read in 0 1+, 45975 2+, 5187 3+, 47 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100\interact-S22049-Arjun-100.pep.xml... ...read in 0 1+, 39078 2+, 15090 3+, 1346 4+, 122 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101\interact-S22049-Arjun-101.pep.xml... ...read in 0 1+, 39495 2+, 16590 3+, 1822 4+, 217 5+, 10 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102\interact-S22049-Arjun-102.pep.xml... ...read in 0 1+, 37885 2+, 807 3+, 19 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103\interact-S22049-Arjun-103.pep.xml... ...read in 0 1+, 38986 2+, 15269 3+, 1660 4+, 212 5+, 10 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104\interact-S22049-Arjun-104.pep.xml... ...read in 0 1+, 39215 2+, 14736 3+, 1353 4+, 144 5+, 2 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105\interact-S22049-Arjun-105.pep.xml... ...read in 0 1+, 38373 2+, 15069 3+, 1707 4+, 243 5+, 15 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106\interact-S22049-Arjun-106.pep.xml... ...read in 0 1+, 39987 2+, 15622 3+, 1557 4+, 175 5+, 5 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107\interact-S22049-Arjun-107.pep.xml... ...read in 0 1+, 34809 2+, 10226 3+, 412 4+, 8 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108\interact-S22049-Arjun-108.pep.xml... ...read in 0 1+, 37272 2+, 13158 3+, 924 4+, 59 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109\interact-S22049-Arjun-109.pep.xml... ...read in 0 1+, 35520 2+, 12095 3+, 707 4+, 26 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11\interact-S22049-Arjun-11.pep.xml... ...read in 0 1+, 44385 2+, 19719 3+, 2035 4+, 216 5+, 6 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110\interact-S22049-Arjun-110.pep.xml... ...read in 0 1+, 34609 2+, 8695 3+, 206 4+, 2 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111\interact-S22049-Arjun-111.pep.xml... ...read in 0 1+, 39535 2+, 11492 3+, 434 4+, 2 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112\interact-S22049-Arjun-112.pep.xml... ...read in 0 1+, 33770 2+, 10945 3+, 622 4+, 24 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113\interact-S22049-Arjun-113.pep.xml... ...read in 0 1+, 36743 2+, 10502 3+, 453 4+, 4 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114\interact-S22049-Arjun-114.pep.xml... ...read in 0 1+, 40573 2+, 7474 3+, 130 4+, 3 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115\interact-S22049-Arjun-115.pep.xml... ...read in 0 1+, 39971 2+, 11318 3+, 466 4+, 2 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116\interact-S22049-Arjun-116.pep.xml... ...read in 0 1+, 36765 2+, 9545 3+, 290 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117\interact-S22049-Arjun-117.pep.xml... ...read in 0 1+, 39028 2+, 11015 3+, 448 4+, 6 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118\interact-S22049-Arjun-118.pep.xml... ...read in 0 1+, 42306 2+, 6047 3+, 74 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119\interact-S22049-Arjun-119.pep.xml... ...read in 0 1+, 38272 2+, 11307 3+, 470 4+, 4 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12\interact-S22049-Arjun-12.pep.xml... ...read in 0 1+, 42246 2+, 17562 3+, 1405 4+, 122 5+, 1 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120\interact-S22049-Arjun-120.pep.xml... ...read in 0 1+, 38132 2+, 9623 3+, 275 4+, 1 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121\interact-S22049-Arjun-121.pep.xml... ...read in 0 1+, 39621 2+, 10999 3+, 408 4+, 5 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122\interact-S22049-Arjun-122.pep.xml... ...read in 0 1+, 41266 2+, 9480 3+, 178 4+, 4 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\interact-S22049-Arjun-123.pep.xml... ...read in 0 1+, 41384 2+, 11439 3+, 422 4+, 5 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125\interact-S22049-Arjun-125.pep.xml... ...read in 0 1+, 41937 2+, 13171 3+, 599 4+, 12 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126\interact-S22049-Arjun-126.pep.xml... ...read in 0 1+, 35003 2+, 8381 3+, 239 4+, 3 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127\interact-S22049-Arjun-127.pep.xml... ...read in 0 1+, 36017 2+, 8568 3+, 170 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128\interact-S22049-Arjun-128.pep.xml... ...read in 0 1+, 38345 2+, 9520 3+, 292 4+, 1 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129\interact-S22049-Arjun-129.pep.xml... ...read in 0 1+, 36455 2+, 7274 3+, 114 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13\interact-S22049-Arjun-13.pep.xml... ...read in 0 1+, 46351 2+, 9497 3+, 164 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130\interact-S22049-Arjun-130.pep.xml... ...read in 0 1+, 41572 2+, 12386 3+, 591 4+, 15 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131\interact-S22049-Arjun-131.pep.xml... ...read in 0 1+, 39192 2+, 11073 3+, 401 4+, 4 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132\interact-S22049-Arjun-132.pep.xml... ...read in 0 1+, 42831 2+, 13499 3+, 716 4+, 18 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133\interact-S22049-Arjun-133.pep.xml... ...read in 0 1+, 36851 2+, 10768 3+, 452 4+, 5 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134\interact-S22049-Arjun-134.pep.xml... ...read in 0 1+, 5593 2+, 218 3+, 21 4+, 1 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135\interact-S22049-Arjun-135.pep.xml... ...read in 0 1+, 3814 2+, 721 3+, 64 4+, 3 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136\interact-S22049-Arjun-136.pep.xml... ...read in 0 1+, 41340 2+, 10839 3+, 497 4+, 23 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137\interact-S22049-Arjun-137.pep.xml... ...read in 0 1+, 36027 2+, 8387 3+, 162 4+, 2 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138\interact-S22049-Arjun-138.pep.xml... ...read in 0 1+, 41054 2+, 12319 3+, 577 4+, 10 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139\interact-S22049-Arjun-139.pep.xml... ...read in 0 1+, 37619 2+, 8695 3+, 204 4+, 1 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14\interact-S22049-Arjun-14.pep.xml... ...read in 0 1+, 42117 2+, 10832 3+, 265 4+, 5 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140\interact-S22049-Arjun-140.pep.xml... ...read in 0 1+, 40906 2+, 12179 3+, 569 4+, 14 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141\interact-S22049-Arjun-141.pep.xml... ...read in 0 1+, 41969 2+, 13433 3+, 800 4+, 35 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142\interact-S22049-Arjun-142.pep.xml... ...read in 0 1+, 38537 2+, 11804 3+, 644 4+, 16 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143\interact-S22049-Arjun-143.pep.xml... ...read in 0 1+, 33803 2+, 10133 3+, 430 4+, 5 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144\interact-S22049-Arjun-144.pep.xml... ...read in 0 1+, 35448 2+, 6819 3+, 120 4+, 4 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15\interact-S22049-Arjun-15.pep.xml... ...read in 0 1+, 44364 2+, 17411 3+, 1350 4+, 122 5+, 1 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16\interact-S22049-Arjun-16.pep.xml... ...read in 0 1+, 44095 2+, 16690 3+, 1245 4+, 78 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17\interact-S22049-Arjun-17.pep.xml... ...read in 0 1+, 47116 2+, 5840 3+, 43 4+, 1 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18\interact-S22049-Arjun-18.pep.xml... ...read in 0 1+, 44385 2+, 11428 3+, 278 4+, 4 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19\interact-S22049-Arjun-19.pep.xml... ...read in 0 1+, 46061 2+, 17053 3+, 1114 4+, 66 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2\interact-S22049-Arjun-2.pep.xml... ...read in 0 1+, 45374 2+, 17902 3+, 1173 4+, 81 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20\interact-S22049-Arjun-20.pep.xml... ...read in 0 1+, 48735 2+, 17479 3+, 1057 4+, 73 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21\interact-S22049-Arjun-21.pep.xml... ...read in 0 1+, 46664 2+, 9905 3+, 146 4+, 5 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22\interact-S22049-Arjun-22.pep.xml... ...read in 0 1+, 43515 2+, 12376 3+, 348 4+, 5 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23\interact-S22049-Arjun-23.pep.xml... ...read in 0 1+, 47189 2+, 17441 3+, 1087 4+, 60 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24\interact-S22049-Arjun-24.pep.xml... ...read in 0 1+, 47888 2+, 16772 3+, 963 4+, 53 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25\interact-S22049-Arjun-25.pep.xml... ...read in 0 1+, 41200 2+, 12638 3+, 430 4+, 8 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26\interact-S22049-Arjun-26.pep.xml... ...read in 0 1+, 47726 2+, 7004 3+, 80 4+, 3 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27\interact-S22049-Arjun-27.pep.xml... ...read in 0 1+, 45636 2+, 17416 3+, 1282 4+, 86 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28\interact-S22049-Arjun-28.pep.xml... ...read in 0 1+, 47109 2+, 18508 3+, 1476 4+, 123 5+, 1 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29\interact-S22049-Arjun-29.pep.xml... ...read in 0 1+, 46435 2+, 19435 3+, 1927 4+, 196 5+, 10 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3\interact-S22049-Arjun-3.pep.xml... ...read in 0 1+, 45995 2+, 17357 3+, 1051 4+, 77 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30\interact-S22049-Arjun-30.pep.xml... ...read in 0 1+, 46407 2+, 15190 3+, 710 4+, 21 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31\interact-S22049-Arjun-31.pep.xml... ...read in 0 1+, 38793 2+, 13243 3+, 483 4+, 10 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32\interact-S22049-Arjun-32.pep.xml... ...read in 0 1+, 39101 2+, 12605 3+, 516 4+, 11 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33\interact-S22049-Arjun-33.pep.xml... ...read in 0 1+, 40285 2+, 14693 3+, 775 4+, 15 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34\interact-S22049-Arjun-34.pep.xml... ...read in 0 1+, 43709 2+, 15371 3+, 718 4+, 20 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35\interact-S22049-Arjun-35.pep.xml... ...read in 0 1+, 39163 2+, 11575 3+, 343 4+, 9 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36\interact-S22049-Arjun-36.pep.xml... ...read in 0 1+, 39376 2+, 11990 3+, 321 4+, 4 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37\interact-S22049-Arjun-37.pep.xml... ...read in 0 1+, 48777 2+, 19557 3+, 1535 4+, 126 5+, 1 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38\interact-S22049-Arjun-38.pep.xml... ...read in 0 1+, 47591 2+, 17777 3+, 1104 4+, 67 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39\interact-S22049-Arjun-39.pep.xml... ...read in 0 1+, 39844 2+, 12115 3+, 500 4+, 19 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4\interact-S22049-Arjun-4.pep.xml... ...read in 0 1+, 44105 2+, 16219 3+, 858 4+, 43 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40\interact-S22049-Arjun-40.pep.xml... ...read in 0 1+, 42145 2+, 17404 3+, 1459 4+, 102 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41\interact-S22049-Arjun-41.pep.xml... ...read in 0 1+, 43282 2+, 15965 3+, 935 4+, 39 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42\interact-S22049-Arjun-42.pep.xml... ...read in 0 1+, 43828 2+, 17183 3+, 1050 4+, 49 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43\interact-S22049-Arjun-43.pep.xml... ...read in 0 1+, 43900 2+, 18919 3+, 1595 4+, 129 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44\interact-S22049-Arjun-44.pep.xml... ...read in 0 1+, 43975 2+, 15208 3+, 712 4+, 24 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45\interact-S22049-Arjun-45.pep.xml... ...read in 0 1+, 44978 2+, 16358 3+, 888 4+, 38 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46\interact-S22049-Arjun-46.pep.xml... ...read in 0 1+, 43751 2+, 15879 3+, 902 4+, 47 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47\interact-S22049-Arjun-47.pep.xml... ...read in 0 1+, 43724 2+, 17226 3+, 1233 4+, 82 5+, 1 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48\interact-S22049-Arjun-48.pep.xml... ...read in 0 1+, 44725 2+, 15854 3+, 843 4+, 34 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49\interact-S22049-Arjun-49.pep.xml... ...read in 0 1+, 45678 2+, 18666 3+, 1524 4+, 140 5+, 1 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5\interact-S22049-Arjun-5.pep.xml... ...read in 0 1+, 45189 2+, 11928 3+, 270 4+, 1 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50\interact-S22049-Arjun-50.pep.xml... ...read in 0 1+, 45084 2+, 17431 3+, 1070 4+, 44 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51\interact-S22049-Arjun-51.pep.xml... ...read in 0 1+, 46073 2+, 19026 3+, 1512 4+, 126 5+, 2 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52\interact-S22049-Arjun-52.pep.xml... ...read in 0 1+, 44986 2+, 17075 3+, 1185 4+, 90 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53\interact-S22049-Arjun-53.pep.xml... ...read in 0 1+, 49551 2+, 16567 3+, 817 4+, 36 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54\interact-S22049-Arjun-54.pep.xml... ...read in 0 1+, 46130 2+, 16548 3+, 1032 4+, 56 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55\interact-S22049-Arjun-55.pep.xml... ...read in 0 1+, 45037 2+, 16342 3+, 954 4+, 45 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56\interact-S22049-Arjun-56.pep.xml... ...read in 0 1+, 46626 2+, 16853 3+, 1069 4+, 62 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57\interact-S22049-Arjun-57.pep.xml... ...read in 0 1+, 44451 2+, 18042 3+, 1351 4+, 84 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd\interact-S22049-Arjun-58-2nd.pep.xml... ...read in 0 1+, 41156 2+, 16242 3+, 1082 4+, 62 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd\interact-S22049-Arjun-59-2nd.pep.xml... ...read in 0 1+, 43738 2+, 17684 3+, 1368 4+, 91 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6\interact-S22049-Arjun-6.pep.xml... ...read in 0 1+, 50186 2+, 9226 3+, 115 4+, 1 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd\interact-S22049-Arjun-60-2nd.pep.xml... ...read in 0 1+, 44071 2+, 13669 3+, 564 4+, 25 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd\interact-S22049-Arjun-61-2nd.pep.xml... ...read in 0 1+, 40236 2+, 14255 3+, 830 4+, 31 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd\interact-S22049-Arjun-62-2nd.pep.xml... ...read in 0 1+, 46909 2+, 17370 3+, 1153 4+, 79 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd\interact-S22049-Arjun-63-2nd.pep.xml... ...read in 0 1+, 46423 2+, 19125 3+, 2347 4+, 343 5+, 24 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd\interact-S22049-Arjun-64-2nd.pep.xml... ...read in 0 1+, 45502 2+, 15593 3+, 795 4+, 39 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd\interact-S22049-Arjun-65-2nd.pep.xml... ...read in 0 1+, 45550 2+, 18744 3+, 1598 4+, 122 5+, 1 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd\interact-S22049-Arjun-66-2nd.pep.xml... ...read in 0 1+, 46712 2+, 16727 3+, 935 4+, 51 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67\interact-S22049-Arjun-67.pep.xml... ...read in 0 1+, 46782 2+, 17553 3+, 1165 4+, 57 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68\interact-S22049-Arjun-68.pep.xml... ...read in 0 1+, 46594 2+, 18909 3+, 1735 4+, 161 5+, 6 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69\interact-S22049-Arjun-69.pep.xml... ...read in 0 1+, 44894 2+, 17578 3+, 1198 4+, 65 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7\interact-S22049-Arjun-7.pep.xml... ...read in 0 1+, 46142 2+, 19301 3+, 1521 4+, 117 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70\interact-S22049-Arjun-70.pep.xml... ...read in 0 1+, 45916 2+, 17335 3+, 1194 4+, 65 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71\interact-S22049-Arjun-71.pep.xml... ...read in 0 1+, 46737 2+, 17935 3+, 1298 4+, 74 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72\interact-S22049-Arjun-72.pep.xml... ...read in 0 1+, 45675 2+, 18317 3+, 1592 4+, 125 5+, 1 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73\interact-S22049-Arjun-73.pep.xml... ...read in 0 1+, 37480 2+, 14517 3+, 1768 4+, 226 5+, 7 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74\interact-S22049-Arjun-74.pep.xml... ...read in 0 1+, 37937 2+, 12926 3+, 958 4+, 66 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75\interact-S22049-Arjun-75.pep.xml... ...read in 0 1+, 37806 2+, 14292 3+, 1335 4+, 135 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76\interact-S22049-Arjun-76.pep.xml... ...read in 0 1+, 38622 2+, 13910 3+, 1002 4+, 61 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77\interact-S22049-Arjun-77.pep.xml... ...read in 0 1+, 38992 2+, 14232 3+, 1262 4+, 141 5+, 3 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78\interact-S22049-Arjun-78.pep.xml... ...read in 0 1+, 38276 2+, 13924 3+, 1186 4+, 104 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79\interact-S22049-Arjun-79.pep.xml... ...read in 0 1+, 40978 2+, 13628 3+, 764 4+, 30 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8\interact-S22049-Arjun-8.pep.xml... ...read in 0 1+, 45488 2+, 17221 3+, 1037 4+, 65 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80\interact-S22049-Arjun-80.pep.xml... ...read in 0 1+, 34999 2+, 11831 3+, 719 4+, 27 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81\interact-S22049-Arjun-81.pep.xml... ...read in 0 1+, 41314 2+, 13372 3+, 671 4+, 22 5+, 1 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82\interact-S22049-Arjun-82.pep.xml... ...read in 0 1+, 39594 2+, 14873 3+, 1254 4+, 119 5+, 1 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83\interact-S22049-Arjun-83.pep.xml... ...read in 0 1+, 39347 2+, 15167 3+, 1163 4+, 73 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd\interact-S22049-Arjun-84-2nd.pep.xml... ...read in 0 1+, 41144 2+, 15420 3+, 1203 4+, 90 5+, 1 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85\interact-S22049-Arjun-85.pep.xml... ...read in 0 1+, 41989 2+, 15778 3+, 1572 4+, 191 5+, 7 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86\interact-S22049-Arjun-86.pep.xml... ...read in 0 1+, 41120 2+, 14103 3+, 956 4+, 68 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87\interact-S22049-Arjun-87.pep.xml... ...read in 0 1+, 41236 2+, 16639 3+, 1541 4+, 141 5+, 5 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88\interact-S22049-Arjun-88.pep.xml... ...read in 0 1+, 41776 2+, 15089 3+, 1007 4+, 48 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89\interact-S22049-Arjun-89.pep.xml... ...read in 0 1+, 42041 2+, 17525 3+, 1741 4+, 186 5+, 6 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9\interact-S22049-Arjun-9.pep.xml... ...read in 0 1+, 44434 2+, 10650 3+, 189 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90\interact-S22049-Arjun-90.pep.xml... ...read in 0 1+, 41320 2+, 14894 3+, 1043 4+, 69 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91\interact-S22049-Arjun-91.pep.xml... ...read in 0 1+, 39900 2+, 15673 3+, 1362 4+, 121 5+, 1 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92\interact-S22049-Arjun-92.pep.xml... ...read in 0 1+, 38497 2+, 14453 3+, 952 4+, 36 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93\interact-S22049-Arjun-93.pep.xml... ...read in 0 1+, 39726 2+, 17552 3+, 1887 4+, 190 5+, 9 6+, 1 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94\interact-S22049-Arjun-94.pep.xml... ...read in 0 1+, 39397 2+, 13384 3+, 909 4+, 55 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95\interact-S22049-Arjun-95.pep.xml... ...read in 0 1+, 40293 2+, 15508 3+, 1221 4+, 71 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96\interact-S22049-Arjun-96.pep.xml... ...read in 0 1+, 39152 2+, 13550 3+, 1063 4+, 78 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97\interact-S22049-Arjun-97.pep.xml... ...read in 0 1+, 18230 2+, 4381 3+, 311 4+, 24 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98\interact-S22049-Arjun-98.pep.xml... ...read in 0 1+, 37768 2+, 13193 3+, 972 4+, 66 5+, 0 6+, 0 7+ spectra with min prob 0.05 Reading in D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99\interact-S22049-Arjun-99.pep.xml... ...read in 0 1+, 34267 2+, 13358 3+, 1134 4+, 86 5+, 0 6+, 0 7+ spectra with min prob 0.05 Initializing 52671 peptide weights: 0%...10%...20%...30%...40%...50%...60%WARNING: Trying to compute mass of non-residue: WARNING: Trying to compute mass of non-residue: WARNING: Trying to compute mass of non-residue: WARNING: Trying to compute mass of non-residue: ...70%...80%...90%...100% Calculating protein lengths and molecular weights from database D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas .........:.........:.........:.........:.........:.........:.........:.........:.........:.........1000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........2000 .........:.........:.........:.........:.........:.WARNING: Found the following zero-mass residues in protein entry rev_tr|AbiV|Sylvain_LACLM : M KNNALKEFLEDTTESVEFSHHTYGVLSDDFCEIAYLLLARSQEKSIKESPVELIDDIIDAYLSSERISILEGTEADEVIKDIMEDGIAKNLRGGMKITPLSGFAHKSKHNRLPDKGRKIDKNESIFMGIHTKGVEEIITISIFTSTAFSENTYLLYADKILVSIHDICKNLDDTSKLSFKSEKTNLTNKMKGLAYNDKDF ........:.........:.........:.........:.........3000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........4000 .........:.........:.........:.........:.........:.........:.........:.........:.........:.........5000 ......WARNING: Found the following zero-mass residues in protein entry tr|AbiV|Sylvain_LACLM : MFDKDNYALGKMKNTLNTKESKFSLKSTDDLNKCIDHISVLIKDAYLLYTNESFATSTFISITIIEEVGKTHIGMFISENKDIKRGKDPLRNHKSKHAFGSLPTIKMGGRLNKAIGDEMIDKIVEDAETGELISIRESSLYADIIDDILEVPSEKISKEQSRALLLYAIECFDDSLVGYTHHSFEVSETTDELFEKLANNK ...: Total: 5102 Computing degenerate peptides for 4575 proteins: 0%...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% Computing probabilities for 4596 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 4596 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 4596 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 4596 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 4596 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Computing probabilities for 4596 proteins. Loop 1: 0%...20%...40%...60%...80%...100% Loop 2: 0%...20%...40%...60%...80%...100% Calculating sensitivity...and error tables... INFO: mu=0.00152673, db_size=2918063 Computing MU for 4596 proteins: 0%...10%...20%...30%...40%...50%...60%...70%...80%...90%...100% INFO[11:37:58] Done Process 'ProteinProphet' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:37:58] Executing Database v4.8.1 INFO[11:37:58] Annotating the database INFO[11:37:59] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:37:59] Executing Database v4.8.1 INFO[11:37:59] Annotating the database INFO[11:38:00] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:00] Executing Database v4.8.1 INFO[11:38:00] Annotating the database INFO[11:38:01] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:02] Executing Database v4.8.1 INFO[11:38:02] Annotating the database INFO[11:38:02] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:03] Executing Database v4.8.1 INFO[11:38:03] Annotating the database INFO[11:38:03] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:04] Executing Database v4.8.1 INFO[11:38:04] Annotating the database INFO[11:38:04] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:05] Executing Database v4.8.1 INFO[11:38:05] Annotating the database INFO[11:38:05] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:06] Executing Database v4.8.1 INFO[11:38:06] Annotating the database INFO[11:38:07] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:07] Executing Database v4.8.1 INFO[11:38:07] Annotating the database INFO[11:38:08] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:08] Executing Database v4.8.1 INFO[11:38:08] Annotating the database INFO[11:38:09] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:09] Executing Database v4.8.1 INFO[11:38:09] Annotating the database INFO[11:38:10] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:11] Executing Database v4.8.1 INFO[11:38:11] Annotating the database INFO[11:38:11] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:12] Executing Database v4.8.1 INFO[11:38:12] Annotating the database INFO[11:38:12] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:13] Executing Database v4.8.1 INFO[11:38:13] Annotating the database INFO[11:38:13] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:14] Executing Database v4.8.1 INFO[11:38:14] Annotating the database INFO[11:38:14] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:15] Executing Database v4.8.1 INFO[11:38:15] Annotating the database INFO[11:38:16] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:16] Executing Database v4.8.1 INFO[11:38:16] Annotating the database INFO[11:38:17] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:17] Executing Database v4.8.1 INFO[11:38:17] Annotating the database INFO[11:38:18] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:19] Executing Database v4.8.1 INFO[11:38:19] Annotating the database INFO[11:38:19] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:20] Executing Database v4.8.1 INFO[11:38:20] Annotating the database INFO[11:38:20] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:21] Executing Database v4.8.1 INFO[11:38:21] Annotating the database INFO[11:38:21] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:22] Executing Database v4.8.1 INFO[11:38:22] Annotating the database INFO[11:38:22] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:23] Executing Database v4.8.1 INFO[11:38:23] Annotating the database INFO[11:38:24] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:24] Executing Database v4.8.1 INFO[11:38:24] Annotating the database INFO[11:38:25] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:25] Executing Database v4.8.1 INFO[11:38:25] Annotating the database INFO[11:38:26] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:26] Executing Database v4.8.1 INFO[11:38:26] Annotating the database INFO[11:38:27] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:28] Executing Database v4.8.1 INFO[11:38:28] Annotating the database INFO[11:38:28] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:29] Executing Database v4.8.1 INFO[11:38:29] Annotating the database INFO[11:38:29] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:30] Executing Database v4.8.1 INFO[11:38:30] Annotating the database INFO[11:38:30] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:31] Executing Database v4.8.1 INFO[11:38:31] Annotating the database INFO[11:38:31] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:32] Executing Database v4.8.1 INFO[11:38:32] Annotating the database INFO[11:38:33] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:33] Executing Database v4.8.1 INFO[11:38:33] Annotating the database INFO[11:38:34] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:34] Executing Database v4.8.1 INFO[11:38:34] Annotating the database INFO[11:38:35] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:35] Executing Database v4.8.1 INFO[11:38:35] Annotating the database INFO[11:38:36] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:37] Executing Database v4.8.1 INFO[11:38:37] Annotating the database INFO[11:38:37] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:38] Executing Database v4.8.1 INFO[11:38:38] Annotating the database INFO[11:38:38] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:39] Executing Database v4.8.1 INFO[11:38:39] Annotating the database INFO[11:38:39] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:40] Executing Database v4.8.1 INFO[11:38:40] Annotating the database INFO[11:38:40] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:41] Executing Database v4.8.1 INFO[11:38:41] Annotating the database INFO[11:38:42] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:42] Executing Database v4.8.1 INFO[11:38:42] Annotating the database INFO[11:38:43] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:43] Executing Database v4.8.1 INFO[11:38:43] Annotating the database INFO[11:38:44] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:44] Executing Database v4.8.1 INFO[11:38:44] Annotating the database INFO[11:38:45] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:46] Executing Database v4.8.1 INFO[11:38:46] Annotating the database INFO[11:38:46] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:47] Executing Database v4.8.1 INFO[11:38:47] Annotating the database INFO[11:38:47] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:48] Executing Database v4.8.1 INFO[11:38:48] Annotating the database INFO[11:38:48] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:49] Executing Database v4.8.1 INFO[11:38:49] Annotating the database INFO[11:38:49] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:50] Executing Database v4.8.1 INFO[11:38:50] Annotating the database INFO[11:38:51] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:51] Executing Database v4.8.1 INFO[11:38:51] Annotating the database INFO[11:38:52] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:52] Executing Database v4.8.1 INFO[11:38:52] Annotating the database INFO[11:38:53] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:53] Executing Database v4.8.1 INFO[11:38:53] Annotating the database INFO[11:38:54] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:55] Executing Database v4.8.1 INFO[11:38:55] Annotating the database INFO[11:38:55] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:56] Executing Database v4.8.1 INFO[11:38:56] Annotating the database INFO[11:38:56] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:57] Executing Database v4.8.1 INFO[11:38:57] Annotating the database INFO[11:38:57] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:58] Executing Database v4.8.1 INFO[11:38:58] Annotating the database INFO[11:38:58] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:38:59] Executing Database v4.8.1 INFO[11:38:59] Annotating the database INFO[11:39:00] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:00] Executing Database v4.8.1 INFO[11:39:00] Annotating the database INFO[11:39:01] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:01] Executing Database v4.8.1 INFO[11:39:01] Annotating the database INFO[11:39:02] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:02] Executing Database v4.8.1 INFO[11:39:02] Annotating the database INFO[11:39:03] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:04] Executing Database v4.8.1 INFO[11:39:04] Annotating the database INFO[11:39:04] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:05] Executing Database v4.8.1 INFO[11:39:05] Annotating the database INFO[11:39:05] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:06] Executing Database v4.8.1 INFO[11:39:06] Annotating the database INFO[11:39:06] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:07] Executing Database v4.8.1 INFO[11:39:07] Annotating the database INFO[11:39:07] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:08] Executing Database v4.8.1 INFO[11:39:08] Annotating the database INFO[11:39:09] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:09] Executing Database v4.8.1 INFO[11:39:09] Annotating the database INFO[11:39:10] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:10] Executing Database v4.8.1 INFO[11:39:10] Annotating the database INFO[11:39:11] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:11] Executing Database v4.8.1 INFO[11:39:11] Annotating the database INFO[11:39:12] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:13] Executing Database v4.8.1 INFO[11:39:13] Annotating the database INFO[11:39:13] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:14] Executing Database v4.8.1 INFO[11:39:14] Annotating the database INFO[11:39:14] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:15] Executing Database v4.8.1 INFO[11:39:15] Annotating the database INFO[11:39:15] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:16] Executing Database v4.8.1 INFO[11:39:16] Annotating the database INFO[11:39:16] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:17] Executing Database v4.8.1 INFO[11:39:17] Annotating the database INFO[11:39:18] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:18] Executing Database v4.8.1 INFO[11:39:18] Annotating the database INFO[11:39:19] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:19] Executing Database v4.8.1 INFO[11:39:19] Annotating the database INFO[11:39:20] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:20] Executing Database v4.8.1 INFO[11:39:20] Annotating the database INFO[11:39:21] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:22] Executing Database v4.8.1 INFO[11:39:22] Annotating the database INFO[11:39:22] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:23] Executing Database v4.8.1 INFO[11:39:23] Annotating the database INFO[11:39:23] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:24] Executing Database v4.8.1 INFO[11:39:24] Annotating the database INFO[11:39:24] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:25] Executing Database v4.8.1 INFO[11:39:25] Annotating the database INFO[11:39:25] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:26] Executing Database v4.8.1 INFO[11:39:26] Annotating the database INFO[11:39:27] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:27] Executing Database v4.8.1 INFO[11:39:27] Annotating the database INFO[11:39:28] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:28] Executing Database v4.8.1 INFO[11:39:28] Annotating the database INFO[11:39:29] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:29] Executing Database v4.8.1 INFO[11:39:29] Annotating the database INFO[11:39:30] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:31] Executing Database v4.8.1 INFO[11:39:31] Annotating the database INFO[11:39:31] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:32] Executing Database v4.8.1 INFO[11:39:32] Annotating the database INFO[11:39:32] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:33] Executing Database v4.8.1 INFO[11:39:33] Annotating the database INFO[11:39:33] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:34] Executing Database v4.8.1 INFO[11:39:34] Annotating the database INFO[11:39:34] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:35] Executing Database v4.8.1 INFO[11:39:35] Annotating the database INFO[11:39:35] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:36] Executing Database v4.8.1 INFO[11:39:36] Annotating the database INFO[11:39:37] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:37] Executing Database v4.8.1 INFO[11:39:37] Annotating the database INFO[11:39:38] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:38] Executing Database v4.8.1 INFO[11:39:38] Annotating the database INFO[11:39:39] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:39] Executing Database v4.8.1 INFO[11:39:40] Annotating the database INFO[11:39:40] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:41] Executing Database v4.8.1 INFO[11:39:41] Annotating the database INFO[11:39:41] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:42] Executing Database v4.8.1 INFO[11:39:42] Annotating the database INFO[11:39:42] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:43] Executing Database v4.8.1 INFO[11:39:43] Annotating the database INFO[11:39:43] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:44] Executing Database v4.8.1 INFO[11:39:44] Annotating the database INFO[11:39:44] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:45] Executing Database v4.8.1 INFO[11:39:45] Annotating the database INFO[11:39:46] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:46] Executing Database v4.8.1 INFO[11:39:46] Annotating the database INFO[11:39:47] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:47] Executing Database v4.8.1 INFO[11:39:47] Annotating the database INFO[11:39:48] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:49] Executing Database v4.8.1 INFO[11:39:49] Annotating the database INFO[11:39:49] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:50] Executing Database v4.8.1 INFO[11:39:50] Annotating the database INFO[11:39:50] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:51] Executing Database v4.8.1 INFO[11:39:51] Annotating the database INFO[11:39:51] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:52] Executing Database v4.8.1 INFO[11:39:52] Annotating the database INFO[11:39:52] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:53] Executing Database v4.8.1 INFO[11:39:53] Annotating the database INFO[11:39:54] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:54] Executing Database v4.8.1 INFO[11:39:54] Annotating the database INFO[11:39:55] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:55] Executing Database v4.8.1 INFO[11:39:55] Annotating the database INFO[11:39:56] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:56] Executing Database v4.8.1 INFO[11:39:56] Annotating the database INFO[11:39:57] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:57] Executing Database v4.8.1 INFO[11:39:57] Annotating the database INFO[11:39:58] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:39:59] Executing Database v4.8.1 INFO[11:39:59] Annotating the database INFO[11:39:59] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:00] Executing Database v4.8.1 INFO[11:40:00] Annotating the database INFO[11:40:00] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:01] Executing Database v4.8.1 INFO[11:40:01] Annotating the database INFO[11:40:01] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:02] Executing Database v4.8.1 INFO[11:40:02] Annotating the database INFO[11:40:02] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:03] Executing Database v4.8.1 INFO[11:40:03] Annotating the database INFO[11:40:04] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:04] Executing Database v4.8.1 INFO[11:40:04] Annotating the database INFO[11:40:05] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:05] Executing Database v4.8.1 INFO[11:40:05] Annotating the database INFO[11:40:06] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:07] Executing Database v4.8.1 INFO[11:40:07] Annotating the database INFO[11:40:07] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:08] Executing Database v4.8.1 INFO[11:40:08] Annotating the database INFO[11:40:08] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:09] Executing Database v4.8.1 INFO[11:40:09] Annotating the database INFO[11:40:09] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:10] Executing Database v4.8.1 INFO[11:40:10] Annotating the database INFO[11:40:11] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:11] Executing Database v4.8.1 INFO[11:40:11] Annotating the database INFO[11:40:12] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:12] Executing Database v4.8.1 INFO[11:40:12] Annotating the database INFO[11:40:13] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:13] Executing Database v4.8.1 INFO[11:40:13] Annotating the database INFO[11:40:14] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:15] Executing Database v4.8.1 INFO[11:40:15] Annotating the database INFO[11:40:15] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:16] Executing Database v4.8.1 INFO[11:40:16] Annotating the database INFO[11:40:16] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:17] Executing Database v4.8.1 INFO[11:40:17] Annotating the database INFO[11:40:17] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:18] Executing Database v4.8.1 INFO[11:40:18] Annotating the database INFO[11:40:18] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:19] Executing Database v4.8.1 INFO[11:40:19] Annotating the database INFO[11:40:20] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:20] Executing Database v4.8.1 INFO[11:40:20] Annotating the database INFO[11:40:21] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:21] Executing Database v4.8.1 INFO[11:40:21] Annotating the database INFO[11:40:22] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:22] Executing Database v4.8.1 INFO[11:40:22] Annotating the database INFO[11:40:23] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:24] Executing Database v4.8.1 INFO[11:40:24] Annotating the database INFO[11:40:24] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:25] Executing Database v4.8.1 INFO[11:40:25] Annotating the database INFO[11:40:25] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:26] Executing Database v4.8.1 INFO[11:40:26] Annotating the database INFO[11:40:26] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:27] Executing Database v4.8.1 INFO[11:40:27] Annotating the database INFO[11:40:27] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:28] Executing Database v4.8.1 INFO[11:40:28] Annotating the database INFO[11:40:29] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:29] Executing Database v4.8.1 INFO[11:40:29] Annotating the database INFO[11:40:30] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:30] Executing Database v4.8.1 INFO[11:40:30] Annotating the database INFO[11:40:31] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:32] Executing Database v4.8.1 INFO[11:40:32] Annotating the database INFO[11:40:32] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:33] Executing Database v4.8.1 INFO[11:40:33] Annotating the database INFO[11:40:33] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:34] Executing Database v4.8.1 INFO[11:40:34] Annotating the database INFO[11:40:34] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:35] Executing Database v4.8.1 INFO[11:40:35] Annotating the database INFO[11:40:35] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:36] Executing Database v4.8.1 INFO[11:40:36] Annotating the database INFO[11:40:36] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:37] Executing Database v4.8.1 INFO[11:40:37] Annotating the database INFO[11:40:38] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:38] Executing Database v4.8.1 INFO[11:40:38] Annotating the database INFO[11:40:39] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherDbAnnotate [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe database --annotate D:\JAM\Sylvain_fragpipe\2023-03-03-decoys-contam-PhageP2_and_Lactococcus_Phage_P2_Lactococcus lactis bacteriophage p2_3AUP00000234_21Feb2023_49_Proteins_Lactococcus_lactis_(strain_MG1363)_3AUP00000036_21Feb2023_2383_Proteins.txt.fas --prefix rev_ INFO[11:40:39] Executing Database v4.8.1 INFO[11:40:39] Annotating the database INFO[11:40:40] Done Process 'PhilosopherDbAnnotate' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razor INFO[11:40:40] Executing Filter v4.8.1 INFO[11:40:40] Processing peptide identification files INFO[11:40:40] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\interact-S22049-Arjun-1.pep.xml INFO[11:40:45] 1+ Charge profile decoy=0 target=0 INFO[11:40:45] 2+ Charge profile decoy=312 target=40763 INFO[11:40:45] 3+ Charge profile decoy=61 target=11269 INFO[11:40:45] 4+ Charge profile decoy=4 target=244 INFO[11:40:45] 5+ Charge profile decoy=0 target=3 INFO[11:40:45] 6+ Charge profile decoy=0 target=0 INFO[11:40:45] Database search results ions=13712 peptides=10922 psms=52656 INFO[11:40:45] Converged to 0.72 % FDR with 52279 PSMs decoy=377 threshold=0.50069 total=52656 INFO[11:40:45] Converged to 1.00 % FDR with 10429 Peptides decoy=104 threshold=0.863916 total=10533 INFO[11:40:45] Converged to 1.00 % FDR with 13230 Ions decoy=132 threshold=0.814472 total=13362 INFO[11:40:47] Protein inference results decoy=2210 target=2337 INFO[11:40:47] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:40:48] Applying sequential FDR estimation ions=13371 peptides=10581 psms=52245 INFO[11:40:48] Converged to 0.10 % FDR with 52194 PSMs decoy=51 threshold=0.500961 total=52245 INFO[11:40:48] Converged to 0.38 % FDR with 10541 Peptides decoy=40 threshold=0.502497 total=10581 INFO[11:40:48] Converged to 0.31 % FDR with 13330 Ions decoy=41 threshold=0.502497 total=13371 INFO[11:40:48] Post processing identifications INFO[11:40:50] Assigning protein identifications to layers INFO[11:40:50] Processing protein inference INFO[11:40:52] Synchronizing PSMs and proteins INFO[11:40:52] Final report numbers after FDR filtering, and post-processing ions=13330 peptides=10541 proteins=1447 psms=52194 INFO[11:40:52] Saving INFO[11:40:52] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:40:53] Executing Filter v4.8.1 INFO[11:40:53] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:40:53] Processing peptide identification files INFO[11:40:53] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10\interact-S22049-Arjun-10.pep.xml INFO[11:40:58] 1+ Charge profile decoy=0 target=0 INFO[11:40:58] 2+ Charge profile decoy=296 target=45679 INFO[11:40:58] 3+ Charge profile decoy=29 target=5158 INFO[11:40:58] 4+ Charge profile decoy=0 target=47 INFO[11:40:58] 5+ Charge profile decoy=0 target=0 INFO[11:40:58] 6+ Charge profile decoy=0 target=0 INFO[11:40:58] Database search results ions=9116 peptides=7651 psms=51209 INFO[11:40:58] Converged to 0.64 % FDR with 50884 PSMs decoy=325 threshold=0.500081 total=51209 INFO[11:40:58] Converged to 0.99 % FDR with 7257 Peptides decoy=72 threshold=0.866913 total=7329 INFO[11:40:58] Converged to 1.00 % FDR with 8722 Ions decoy=87 threshold=0.80762 total=8809 INFO[11:40:59] Protein inference results decoy=2210 target=2337 INFO[11:41:00] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:41:01] Applying sequential FDR estimation ions=8840 peptides=7376 psms=50842 INFO[11:41:01] Converged to 0.08 % FDR with 50801 PSMs decoy=41 threshold=0.500081 total=50842 INFO[11:41:01] Converged to 0.39 % FDR with 7347 Peptides decoy=29 threshold=0.501372 total=7376 INFO[11:41:01] Converged to 0.34 % FDR with 8810 Ions decoy=30 threshold=0.501372 total=8840 INFO[11:41:01] Post processing identifications INFO[11:41:03] Assigning protein identifications to layers INFO[11:41:03] Processing protein inference INFO[11:41:04] Synchronizing PSMs and proteins INFO[11:41:04] Final report numbers after FDR filtering, and post-processing ions=8810 peptides=7347 proteins=1396 psms=50801 INFO[11:41:04] Saving INFO[11:41:05] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:41:05] Executing Filter v4.8.1 INFO[11:41:06] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:41:06] Processing peptide identification files INFO[11:41:06] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100\interact-S22049-Arjun-100.pep.xml INFO[11:41:11] 1+ Charge profile decoy=0 target=0 INFO[11:41:11] 2+ Charge profile decoy=208 target=38870 INFO[11:41:11] 3+ Charge profile decoy=56 target=15034 INFO[11:41:11] 4+ Charge profile decoy=5 target=1341 INFO[11:41:11] 5+ Charge profile decoy=2 target=120 INFO[11:41:11] 6+ Charge profile decoy=0 target=0 INFO[11:41:11] Database search results ions=18119 peptides=14039 psms=55636 INFO[11:41:11] Converged to 0.49 % FDR with 55365 PSMs decoy=271 threshold=0.501204 total=55636 INFO[11:41:11] Converged to 1.00 % FDR with 13723 Peptides decoy=137 threshold=0.740269 total=13860 INFO[11:41:11] Converged to 1.00 % FDR with 17840 Ions decoy=178 threshold=0.634885 total=18018 INFO[11:41:13] Protein inference results decoy=2210 target=2337 INFO[11:41:13] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:41:15] Applying sequential FDR estimation ions=17868 peptides=13789 psms=55348 INFO[11:41:15] Converged to 0.07 % FDR with 55307 PSMs decoy=41 threshold=0.501204 total=55348 INFO[11:41:15] Converged to 0.23 % FDR with 13758 Peptides decoy=31 threshold=0.501376 total=13789 INFO[11:41:15] Converged to 0.17 % FDR with 17837 Ions decoy=31 threshold=0.501376 total=17868 INFO[11:41:15] Post processing identifications INFO[11:41:17] Assigning protein identifications to layers INFO[11:41:17] Processing protein inference INFO[11:41:18] Synchronizing PSMs and proteins INFO[11:41:19] Final report numbers after FDR filtering, and post-processing ions=17837 peptides=13758 proteins=1479 psms=55307 INFO[11:41:19] Saving INFO[11:41:19] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:41:19] Executing Filter v4.8.1 INFO[11:41:20] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:41:20] Processing peptide identification files INFO[11:41:20] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101\interact-S22049-Arjun-101.pep.xml INFO[11:41:25] 1+ Charge profile decoy=0 target=0 INFO[11:41:25] 2+ Charge profile decoy=219 target=39276 INFO[11:41:25] 3+ Charge profile decoy=65 target=16525 INFO[11:41:25] 4+ Charge profile decoy=7 target=1815 INFO[11:41:25] 5+ Charge profile decoy=1 target=216 INFO[11:41:25] 6+ Charge profile decoy=0 target=10 INFO[11:41:25] Database search results ions=19200 peptides=14638 psms=58134 INFO[11:41:25] Converged to 0.50 % FDR with 57842 PSMs decoy=292 threshold=0.500706 total=58134 INFO[11:41:25] Converged to 0.99 % FDR with 14289 Peptides decoy=142 threshold=0.774391 total=14431 INFO[11:41:25] Converged to 1.00 % FDR with 18876 Ions decoy=188 threshold=0.673336 total=19064 INFO[11:41:27] Protein inference results decoy=2210 target=2337 INFO[11:41:27] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:41:28] Applying sequential FDR estimation ions=18933 peptides=14374 psms=57829 INFO[11:41:28] Converged to 0.07 % FDR with 57787 PSMs decoy=42 threshold=0.500706 total=57829 INFO[11:41:28] Converged to 0.23 % FDR with 14341 Peptides decoy=33 threshold=0.500706 total=14374 INFO[11:41:28] Converged to 0.17 % FDR with 18900 Ions decoy=33 threshold=0.500706 total=18933 INFO[11:41:29] Post processing identifications INFO[11:41:31] Assigning protein identifications to layers INFO[11:41:31] Processing protein inference INFO[11:41:32] Synchronizing PSMs and proteins INFO[11:41:32] Final report numbers after FDR filtering, and post-processing ions=18900 peptides=14341 proteins=1497 psms=57787 INFO[11:41:32] Saving INFO[11:41:33] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:41:34] Executing Filter v4.8.1 INFO[11:41:34] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:41:34] Processing peptide identification files INFO[11:41:34] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102\interact-S22049-Arjun-102.pep.xml INFO[11:41:37] 1+ Charge profile decoy=0 target=0 INFO[11:41:37] 2+ Charge profile decoy=411 target=37474 INFO[11:41:37] 3+ Charge profile decoy=13 target=794 INFO[11:41:37] 4+ Charge profile decoy=0 target=19 INFO[11:41:37] 5+ Charge profile decoy=0 target=0 INFO[11:41:37] 6+ Charge profile decoy=0 target=0 INFO[11:41:37] Database search results ions=4684 peptides=4206 psms=38711 INFO[11:41:37] Converged to 1.00 % FDR with 38205 PSMs decoy=382 threshold=0.516562 total=38587 INFO[11:41:37] Converged to 0.98 % FDR with 3761 Peptides decoy=37 threshold=0.93847 total=3798 INFO[11:41:37] Converged to 0.99 % FDR with 4239 Ions decoy=42 threshold=0.924232 total=4281 INFO[11:41:39] Protein inference results decoy=2210 target=2337 INFO[11:41:39] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:41:40] Applying sequential FDR estimation ions=4389 peptides=3913 psms=38192 INFO[11:41:40] Converged to 0.22 % FDR with 38109 PSMs decoy=83 threshold=0.516627 total=38192 INFO[11:41:40] Converged to 0.62 % FDR with 3889 Peptides decoy=24 threshold=0.516627 total=3913 INFO[11:41:40] Converged to 0.55 % FDR with 4365 Ions decoy=24 threshold=0.516627 total=4389 INFO[11:41:40] Post processing identifications INFO[11:41:41] Assigning protein identifications to layers INFO[11:41:42] Processing protein inference INFO[11:41:43] Synchronizing PSMs and proteins INFO[11:41:43] Final report numbers after FDR filtering, and post-processing ions=4365 peptides=3889 proteins=1096 psms=38109 INFO[11:41:43] Saving INFO[11:41:43] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:41:44] Executing Filter v4.8.1 INFO[11:41:44] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:41:44] Processing peptide identification files INFO[11:41:44] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103\interact-S22049-Arjun-103.pep.xml INFO[11:41:49] 1+ Charge profile decoy=0 target=0 INFO[11:41:49] 2+ Charge profile decoy=234 target=38752 INFO[11:41:49] 3+ Charge profile decoy=65 target=15204 INFO[11:41:49] 4+ Charge profile decoy=5 target=1655 INFO[11:41:49] 5+ Charge profile decoy=1 target=211 INFO[11:41:49] 6+ Charge profile decoy=0 target=10 INFO[11:41:49] Database search results ions=18776 peptides=14330 psms=56137 INFO[11:41:49] Converged to 0.55 % FDR with 55832 PSMs decoy=305 threshold=0.500518 total=56137 INFO[11:41:49] Converged to 1.00 % FDR with 13953 Peptides decoy=139 threshold=0.733744 total=14092 INFO[11:41:49] Converged to 1.00 % FDR with 18421 Ions decoy=184 threshold=0.647369 total=18605 INFO[11:41:51] Protein inference results decoy=2210 target=2337 INFO[11:41:51] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:41:52] Applying sequential FDR estimation ions=18472 peptides=14028 psms=55797 INFO[11:41:52] Converged to 0.08 % FDR with 55751 PSMs decoy=46 threshold=0.501068 total=55797 INFO[11:41:52] Converged to 0.27 % FDR with 13990 Peptides decoy=38 threshold=0.501291 total=14028 INFO[11:41:52] Converged to 0.22 % FDR with 18432 Ions decoy=40 threshold=0.501291 total=18472 INFO[11:41:52] Post processing identifications INFO[11:41:54] Assigning protein identifications to layers INFO[11:41:55] Processing protein inference INFO[11:41:56] Synchronizing PSMs and proteins INFO[11:41:56] Final report numbers after FDR filtering, and post-processing ions=18432 peptides=13990 proteins=1520 psms=55751 INFO[11:41:56] Saving INFO[11:41:57] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:41:57] Executing Filter v4.8.1 INFO[11:41:57] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:41:57] Processing peptide identification files INFO[11:41:57] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104\interact-S22049-Arjun-104.pep.xml INFO[11:42:02] 1+ Charge profile decoy=0 target=0 INFO[11:42:02] 2+ Charge profile decoy=253 target=38962 INFO[11:42:02] 3+ Charge profile decoy=74 target=14662 INFO[11:42:02] 4+ Charge profile decoy=11 target=1342 INFO[11:42:02] 5+ Charge profile decoy=1 target=143 INFO[11:42:02] 6+ Charge profile decoy=0 target=2 INFO[11:42:02] Database search results ions=18123 peptides=14012 psms=55450 INFO[11:42:02] Converged to 0.62 % FDR with 55111 PSMs decoy=339 threshold=0.500261 total=55450 INFO[11:42:02] Converged to 1.00 % FDR with 13559 Peptides decoy=135 threshold=0.7765 total=13694 INFO[11:42:02] Converged to 0.99 % FDR with 17693 Ions decoy=176 threshold=0.698258 total=17869 INFO[11:42:04] Protein inference results decoy=2210 target=2337 INFO[11:42:04] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:42:06] Applying sequential FDR estimation ions=17780 peptides=13671 psms=55057 INFO[11:42:06] Converged to 0.07 % FDR with 55019 PSMs decoy=38 threshold=0.500813 total=55057 INFO[11:42:06] Converged to 0.23 % FDR with 13639 Peptides decoy=32 threshold=0.502033 total=13671 INFO[11:42:06] Converged to 0.19 % FDR with 17747 Ions decoy=33 threshold=0.501857 total=17780 INFO[11:42:06] Post processing identifications INFO[11:42:08] Assigning protein identifications to layers INFO[11:42:08] Processing protein inference INFO[11:42:09] Synchronizing PSMs and proteins INFO[11:42:10] Final report numbers after FDR filtering, and post-processing ions=17747 peptides=13639 proteins=1505 psms=55019 INFO[11:42:10] Saving INFO[11:42:10] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:42:11] Executing Filter v4.8.1 INFO[11:42:11] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:42:11] Processing peptide identification files INFO[11:42:11] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105\interact-S22049-Arjun-105.pep.xml INFO[11:42:16] 1+ Charge profile decoy=0 target=0 INFO[11:42:16] 2+ Charge profile decoy=218 target=38155 INFO[11:42:16] 3+ Charge profile decoy=82 target=14987 INFO[11:42:16] 4+ Charge profile decoy=11 target=1696 INFO[11:42:16] 5+ Charge profile decoy=1 target=242 INFO[11:42:16] 6+ Charge profile decoy=0 target=15 INFO[11:42:16] Database search results ions=18255 peptides=13881 psms=55407 INFO[11:42:16] Converged to 0.57 % FDR with 55095 PSMs decoy=312 threshold=0.500258 total=55407 INFO[11:42:16] Converged to 0.99 % FDR with 13493 Peptides decoy=134 threshold=0.727184 total=13627 INFO[11:42:16] Converged to 0.99 % FDR with 17896 Ions decoy=178 threshold=0.638015 total=18074 INFO[11:42:18] Protein inference results decoy=2210 target=2337 INFO[11:42:18] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:42:19] Applying sequential FDR estimation ions=17961 peptides=13588 psms=55060 INFO[11:42:19] Converged to 0.07 % FDR with 55022 PSMs decoy=38 threshold=0.500258 total=55060 INFO[11:42:19] Converged to 0.22 % FDR with 13558 Peptides decoy=30 threshold=0.501701 total=13588 INFO[11:42:19] Converged to 0.17 % FDR with 17930 Ions decoy=31 threshold=0.501701 total=17961 INFO[11:42:19] Post processing identifications INFO[11:42:21] Assigning protein identifications to layers INFO[11:42:21] Processing protein inference INFO[11:42:23] Synchronizing PSMs and proteins INFO[11:42:23] Final report numbers after FDR filtering, and post-processing ions=17930 peptides=13558 proteins=1480 psms=55022 INFO[11:42:23] Saving INFO[11:42:23] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:42:24] Executing Filter v4.8.1 INFO[11:42:24] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:42:24] Processing peptide identification files INFO[11:42:24] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106\interact-S22049-Arjun-106.pep.xml INFO[11:42:29] 1+ Charge profile decoy=0 target=0 INFO[11:42:29] 2+ Charge profile decoy=244 target=39743 INFO[11:42:29] 3+ Charge profile decoy=74 target=15548 INFO[11:42:29] 4+ Charge profile decoy=8 target=1549 INFO[11:42:29] 5+ Charge profile decoy=2 target=173 INFO[11:42:29] 6+ Charge profile decoy=0 target=5 INFO[11:42:30] Database search results ions=18620 peptides=13703 psms=57346 INFO[11:42:30] Converged to 0.58 % FDR with 57018 PSMs decoy=328 threshold=0.50063 total=57346 INFO[11:42:30] Converged to 0.99 % FDR with 13271 Peptides decoy=132 threshold=0.777279 total=13403 INFO[11:42:30] Converged to 1.00 % FDR with 18229 Ions decoy=182 threshold=0.680043 total=18411 INFO[11:42:31] Protein inference results decoy=2210 target=2337 INFO[11:42:31] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:42:33] Applying sequential FDR estimation ions=18311 peptides=13396 psms=56992 INFO[11:42:33] Converged to 0.08 % FDR with 56946 PSMs decoy=46 threshold=0.50063 total=56992 INFO[11:42:33] Converged to 0.26 % FDR with 13361 Peptides decoy=35 threshold=0.501428 total=13396 INFO[11:42:33] Converged to 0.20 % FDR with 18274 Ions decoy=37 threshold=0.501428 total=18311 INFO[11:42:33] Post processing identifications INFO[11:42:35] Assigning protein identifications to layers INFO[11:42:35] Processing protein inference INFO[11:42:36] Synchronizing PSMs and proteins INFO[11:42:37] Final report numbers after FDR filtering, and post-processing ions=18274 peptides=13361 proteins=1487 psms=56946 INFO[11:42:37] Saving INFO[11:42:37] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:42:38] Executing Filter v4.8.1 INFO[11:42:38] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:42:38] Processing peptide identification files INFO[11:42:38] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107\interact-S22049-Arjun-107.pep.xml INFO[11:42:42] 1+ Charge profile decoy=0 target=0 INFO[11:42:42] 2+ Charge profile decoy=226 target=34583 INFO[11:42:42] 3+ Charge profile decoy=41 target=10185 INFO[11:42:42] 4+ Charge profile decoy=2 target=410 INFO[11:42:42] 5+ Charge profile decoy=0 target=8 INFO[11:42:42] 6+ Charge profile decoy=0 target=0 INFO[11:42:42] Database search results ions=15218 peptides=11847 psms=45455 INFO[11:42:42] Converged to 0.60 % FDR with 45186 PSMs decoy=269 threshold=0.500131 total=45455 INFO[11:42:42] Converged to 1.00 % FDR with 11521 Peptides decoy=115 threshold=0.709663 total=11636 INFO[11:42:42] Converged to 1.00 % FDR with 14911 Ions decoy=149 threshold=0.636244 total=15060 INFO[11:42:44] Protein inference results decoy=2210 target=2337 INFO[11:42:44] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:42:45] Applying sequential FDR estimation ions=14961 peptides=11591 psms=45158 INFO[11:42:45] Converged to 0.06 % FDR with 45131 PSMs decoy=27 threshold=0.500131 total=45158 INFO[11:42:45] Converged to 0.18 % FDR with 11570 Peptides decoy=21 threshold=0.500131 total=11591 INFO[11:42:45] Converged to 0.15 % FDR with 14939 Ions decoy=22 threshold=0.500131 total=14961 INFO[11:42:45] Post processing identifications INFO[11:42:47] Assigning protein identifications to layers INFO[11:42:47] Processing protein inference INFO[11:42:48] Synchronizing PSMs and proteins INFO[11:42:49] Final report numbers after FDR filtering, and post-processing ions=14939 peptides=11570 proteins=1495 psms=45131 INFO[11:42:49] Saving INFO[11:42:49] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:42:50] Executing Filter v4.8.1 INFO[11:42:50] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:42:50] Processing peptide identification files INFO[11:42:50] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108\interact-S22049-Arjun-108.pep.xml INFO[11:42:55] 1+ Charge profile decoy=0 target=0 INFO[11:42:55] 2+ Charge profile decoy=223 target=37049 INFO[11:42:55] 3+ Charge profile decoy=58 target=13100 INFO[11:42:55] 4+ Charge profile decoy=4 target=920 INFO[11:42:55] 5+ Charge profile decoy=2 target=57 INFO[11:42:55] 6+ Charge profile decoy=0 target=0 INFO[11:42:55] Database search results ions=17246 peptides=13211 psms=51413 INFO[11:42:55] Converged to 0.56 % FDR with 51126 PSMs decoy=287 threshold=0.50147 total=51413 INFO[11:42:55] Converged to 0.99 % FDR with 12873 Peptides decoy=128 threshold=0.731226 total=13001 INFO[11:42:55] Converged to 1.00 % FDR with 16930 Ions decoy=169 threshold=0.638256 total=17099 INFO[11:42:56] Protein inference results decoy=2210 target=2337 INFO[11:42:57] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:42:58] Applying sequential FDR estimation ions=16981 peptides=12947 psms=51100 INFO[11:42:58] Converged to 0.08 % FDR with 51061 PSMs decoy=39 threshold=0.50461 total=51100 INFO[11:42:58] Converged to 0.22 % FDR with 12918 Peptides decoy=29 threshold=0.504791 total=12947 INFO[11:42:58] Converged to 0.18 % FDR with 16951 Ions decoy=30 threshold=0.50461 total=16981 INFO[11:42:58] Post processing identifications INFO[11:43:00] Assigning protein identifications to layers INFO[11:43:00] Processing protein inference INFO[11:43:01] Synchronizing PSMs and proteins INFO[11:43:02] Final report numbers after FDR filtering, and post-processing ions=16951 peptides=12918 proteins=1492 psms=51061 INFO[11:43:02] Saving INFO[11:43:02] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:43:03] Executing Filter v4.8.1 INFO[11:43:03] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:43:03] Processing peptide identification files INFO[11:43:03] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109\interact-S22049-Arjun-109.pep.xml INFO[11:43:08] 1+ Charge profile decoy=0 target=0 INFO[11:43:08] 2+ Charge profile decoy=261 target=35259 INFO[11:43:08] 3+ Charge profile decoy=58 target=12037 INFO[11:43:08] 4+ Charge profile decoy=2 target=705 INFO[11:43:08] 5+ Charge profile decoy=0 target=26 INFO[11:43:08] 6+ Charge profile decoy=0 target=0 INFO[11:43:08] Database search results ions=16351 peptides=12394 psms=48348 INFO[11:43:08] Converged to 0.67 % FDR with 48027 PSMs decoy=321 threshold=0.500128 total=48348 INFO[11:43:08] Converged to 0.99 % FDR with 11976 Peptides decoy=119 threshold=0.784713 total=12095 INFO[11:43:08] Converged to 1.00 % FDR with 15966 Ions decoy=159 threshold=0.692555 total=16125 INFO[11:43:09] Protein inference results decoy=2210 target=2337 INFO[11:43:10] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:43:11] Applying sequential FDR estimation ions=16064 peptides=12109 psms=47995 INFO[11:43:11] Converged to 0.09 % FDR with 47950 PSMs decoy=45 threshold=0.500128 total=47995 INFO[11:43:11] Converged to 0.26 % FDR with 12077 Peptides decoy=32 threshold=0.50016 total=12109 INFO[11:43:11] Converged to 0.21 % FDR with 16031 Ions decoy=33 threshold=0.50016 total=16064 INFO[11:43:11] Post processing identifications INFO[11:43:13] Assigning protein identifications to layers INFO[11:43:13] Processing protein inference INFO[11:43:14] Synchronizing PSMs and proteins INFO[11:43:14] Final report numbers after FDR filtering, and post-processing ions=16031 peptides=12077 proteins=1441 psms=47950 INFO[11:43:14] Saving INFO[11:43:15] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:43:15] Executing Filter v4.8.1 INFO[11:43:16] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:43:16] Processing peptide identification files INFO[11:43:16] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11\interact-S22049-Arjun-11.pep.xml INFO[11:43:21] 1+ Charge profile decoy=0 target=0 INFO[11:43:21] 2+ Charge profile decoy=287 target=44098 INFO[11:43:21] 3+ Charge profile decoy=98 target=19621 INFO[11:43:21] 4+ Charge profile decoy=10 target=2025 INFO[11:43:21] 5+ Charge profile decoy=2 target=214 INFO[11:43:21] 6+ Charge profile decoy=0 target=6 INFO[11:43:21] Database search results ions=18651 peptides=13886 psms=66361 INFO[11:43:22] Converged to 0.60 % FDR with 65964 PSMs decoy=397 threshold=0.500032 total=66361 INFO[11:43:22] Converged to 0.99 % FDR with 13373 Peptides decoy=133 threshold=0.798315 total=13506 INFO[11:43:22] Converged to 1.00 % FDR with 18139 Ions decoy=181 threshold=0.729082 total=18320 INFO[11:43:23] Protein inference results decoy=2210 target=2337 INFO[11:43:23] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:43:25] Applying sequential FDR estimation ions=18275 peptides=13510 psms=65938 INFO[11:43:25] Converged to 0.07 % FDR with 65889 PSMs decoy=49 threshold=0.500032 total=65938 INFO[11:43:25] Converged to 0.30 % FDR with 13470 Peptides decoy=40 threshold=0.500032 total=13510 INFO[11:43:25] Converged to 0.22 % FDR with 18234 Ions decoy=41 threshold=0.500032 total=18275 INFO[11:43:25] Post processing identifications INFO[11:43:28] Assigning protein identifications to layers INFO[11:43:28] Processing protein inference INFO[11:43:29] Synchronizing PSMs and proteins INFO[11:43:29] Final report numbers after FDR filtering, and post-processing ions=18234 peptides=13470 proteins=1479 psms=65889 INFO[11:43:29] Saving INFO[11:43:30] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:43:30] Executing Filter v4.8.1 INFO[11:43:31] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:43:31] Processing peptide identification files INFO[11:43:31] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110\interact-S22049-Arjun-110.pep.xml INFO[11:43:35] 1+ Charge profile decoy=0 target=0 INFO[11:43:35] 2+ Charge profile decoy=262 target=34347 INFO[11:43:35] 3+ Charge profile decoy=54 target=8641 INFO[11:43:35] 4+ Charge profile decoy=2 target=204 INFO[11:43:35] 5+ Charge profile decoy=0 target=2 INFO[11:43:35] 6+ Charge profile decoy=0 target=0 INFO[11:43:35] Database search results ions=12891 peptides=10231 psms=43512 INFO[11:43:35] Converged to 0.74 % FDR with 43194 PSMs decoy=318 threshold=0.500458 total=43512 INFO[11:43:35] Converged to 1.00 % FDR with 9815 Peptides decoy=98 threshold=0.793567 total=9913 INFO[11:43:35] Converged to 0.99 % FDR with 12482 Ions decoy=124 threshold=0.734825 total=12606 INFO[11:43:36] Protein inference results decoy=2210 target=2337 INFO[11:43:37] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:43:38] Applying sequential FDR estimation ions=12599 peptides=9940 psms=43168 INFO[11:43:38] Converged to 0.10 % FDR with 43127 PSMs decoy=41 threshold=0.500458 total=43168 INFO[11:43:38] Converged to 0.25 % FDR with 9915 Peptides decoy=25 threshold=0.500458 total=9940 INFO[11:43:38] Converged to 0.21 % FDR with 12573 Ions decoy=26 threshold=0.500458 total=12599 INFO[11:43:38] Post processing identifications INFO[11:43:39] Assigning protein identifications to layers INFO[11:43:40] Processing protein inference INFO[11:43:41] Synchronizing PSMs and proteins INFO[11:43:41] Final report numbers after FDR filtering, and post-processing ions=12573 peptides=9915 proteins=1426 psms=43127 INFO[11:43:41] Saving INFO[11:43:41] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:43:42] Executing Filter v4.8.1 INFO[11:43:42] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:43:42] Processing peptide identification files INFO[11:43:42] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111\interact-S22049-Arjun-111.pep.xml INFO[11:43:47] 1+ Charge profile decoy=0 target=0 INFO[11:43:47] 2+ Charge profile decoy=256 target=39279 INFO[11:43:47] 3+ Charge profile decoy=64 target=11428 INFO[11:43:47] 4+ Charge profile decoy=2 target=432 INFO[11:43:47] 5+ Charge profile decoy=0 target=2 INFO[11:43:47] 6+ Charge profile decoy=0 target=0 INFO[11:43:47] Database search results ions=15953 peptides=12178 psms=51463 INFO[11:43:47] Converged to 0.63 % FDR with 51141 PSMs decoy=322 threshold=0.500668 total=51463 INFO[11:43:47] Converged to 1.00 % FDR with 11724 Peptides decoy=117 threshold=0.845129 total=11841 INFO[11:43:47] Converged to 1.00 % FDR with 15539 Ions decoy=155 threshold=0.755968 total=15694 INFO[11:43:48] Protein inference results decoy=2210 target=2337 INFO[11:43:49] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:43:50] Applying sequential FDR estimation ions=15628 peptides=11856 psms=51105 INFO[11:43:50] Converged to 0.09 % FDR with 51059 PSMs decoy=46 threshold=0.500668 total=51105 INFO[11:43:50] Converged to 0.29 % FDR with 11822 Peptides decoy=34 threshold=0.500668 total=11856 INFO[11:43:50] Converged to 0.22 % FDR with 15593 Ions decoy=35 threshold=0.500668 total=15628 INFO[11:43:50] Post processing identifications INFO[11:43:52] Assigning protein identifications to layers INFO[11:43:52] Processing protein inference INFO[11:43:53] Synchronizing PSMs and proteins INFO[11:43:54] Final report numbers after FDR filtering, and post-processing ions=15593 peptides=11822 proteins=1461 psms=51059 INFO[11:43:54] Saving INFO[11:43:54] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:43:55] Executing Filter v4.8.1 INFO[11:43:55] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:43:55] Processing peptide identification files INFO[11:43:55] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112\interact-S22049-Arjun-112.pep.xml INFO[11:43:59] 1+ Charge profile decoy=0 target=0 INFO[11:43:59] 2+ Charge profile decoy=197 target=33573 INFO[11:43:59] 3+ Charge profile decoy=47 target=10898 INFO[11:43:59] 4+ Charge profile decoy=2 target=620 INFO[11:43:59] 5+ Charge profile decoy=0 target=24 INFO[11:43:59] 6+ Charge profile decoy=0 target=0 INFO[11:43:59] Database search results ions=15770 peptides=12371 psms=45361 INFO[11:43:59] Converged to 0.55 % FDR with 45115 PSMs decoy=246 threshold=0.500624 total=45361 INFO[11:43:59] Converged to 0.99 % FDR with 12081 Peptides decoy=120 threshold=0.731115 total=12201 INFO[11:43:59] Converged to 1.00 % FDR with 15508 Ions decoy=155 threshold=0.636284 total=15663 INFO[11:44:01] Protein inference results decoy=2210 target=2337 INFO[11:44:01] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:44:02] Applying sequential FDR estimation ions=15539 peptides=12142 psms=45093 INFO[11:44:02] Converged to 0.08 % FDR with 45055 PSMs decoy=38 threshold=0.500624 total=45093 INFO[11:44:02] Converged to 0.23 % FDR with 12114 Peptides decoy=28 threshold=0.504353 total=12142 INFO[11:44:02] Converged to 0.19 % FDR with 15510 Ions decoy=29 threshold=0.504353 total=15539 INFO[11:44:02] Post processing identifications INFO[11:44:04] Assigning protein identifications to layers INFO[11:44:04] Processing protein inference INFO[11:44:05] Synchronizing PSMs and proteins INFO[11:44:06] Final report numbers after FDR filtering, and post-processing ions=15510 peptides=12114 proteins=1430 psms=45055 INFO[11:44:06] Saving INFO[11:44:06] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:44:06] Executing Filter v4.8.1 INFO[11:44:07] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:44:07] Processing peptide identification files INFO[11:44:07] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113\interact-S22049-Arjun-113.pep.xml INFO[11:44:11] 1+ Charge profile decoy=0 target=0 INFO[11:44:11] 2+ Charge profile decoy=267 target=36476 INFO[11:44:11] 3+ Charge profile decoy=57 target=10445 INFO[11:44:11] 4+ Charge profile decoy=3 target=450 INFO[11:44:11] 5+ Charge profile decoy=0 target=4 INFO[11:44:11] 6+ Charge profile decoy=0 target=0 INFO[11:44:11] Database search results ions=15539 peptides=12404 psms=47702 INFO[11:44:11] Converged to 0.69 % FDR with 47375 PSMs decoy=327 threshold=0.500181 total=47702 INFO[11:44:11] Converged to 0.99 % FDR with 11977 Peptides decoy=119 threshold=0.738119 total=12096 INFO[11:44:11] Converged to 1.00 % FDR with 15128 Ions decoy=151 threshold=0.698056 total=15279 INFO[11:44:13] Protein inference results decoy=2210 target=2337 INFO[11:44:13] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:44:14] Applying sequential FDR estimation ions=15229 peptides=12094 psms=47335 INFO[11:44:14] Converged to 0.10 % FDR with 47287 PSMs decoy=48 threshold=0.500421 total=47335 INFO[11:44:14] Converged to 0.28 % FDR with 12060 Peptides decoy=34 threshold=0.500433 total=12094 INFO[11:44:14] Converged to 0.23 % FDR with 15194 Ions decoy=35 threshold=0.500433 total=15229 INFO[11:44:14] Post processing identifications INFO[11:44:16] Assigning protein identifications to layers INFO[11:44:16] Processing protein inference INFO[11:44:17] Synchronizing PSMs and proteins INFO[11:44:18] Final report numbers after FDR filtering, and post-processing ions=15194 peptides=12060 proteins=1465 psms=47287 INFO[11:44:18] Saving INFO[11:44:18] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:44:18] Executing Filter v4.8.1 INFO[11:44:19] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:44:19] Processing peptide identification files INFO[11:44:19] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114\interact-S22049-Arjun-114.pep.xml INFO[11:44:23] 1+ Charge profile decoy=0 target=0 INFO[11:44:23] 2+ Charge profile decoy=249 target=40324 INFO[11:44:23] 3+ Charge profile decoy=34 target=7440 INFO[11:44:23] 4+ Charge profile decoy=1 target=129 INFO[11:44:23] 5+ Charge profile decoy=0 target=3 INFO[11:44:23] 6+ Charge profile decoy=0 target=0 INFO[11:44:23] Database search results ions=10870 peptides=9085 psms=48180 INFO[11:44:23] Converged to 0.59 % FDR with 47896 PSMs decoy=284 threshold=0.500092 total=48180 INFO[11:44:23] Converged to 0.99 % FDR with 8761 Peptides decoy=87 threshold=0.809143 total=8848 INFO[11:44:23] Converged to 0.99 % FDR with 10558 Ions decoy=105 threshold=0.746577 total=10663 INFO[11:44:25] Protein inference results decoy=2210 target=2337 INFO[11:44:25] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:44:26] Applying sequential FDR estimation ions=10638 peptides=8853 psms=47884 INFO[11:44:26] Converged to 0.10 % FDR with 47838 PSMs decoy=46 threshold=0.500092 total=47884 INFO[11:44:26] Converged to 0.35 % FDR with 8822 Peptides decoy=31 threshold=0.503934 total=8853 INFO[11:44:26] Converged to 0.30 % FDR with 10606 Ions decoy=32 threshold=0.503934 total=10638 INFO[11:44:26] Post processing identifications INFO[11:44:28] Assigning protein identifications to layers INFO[11:44:28] Processing protein inference INFO[11:44:29] Synchronizing PSMs and proteins INFO[11:44:29] Final report numbers after FDR filtering, and post-processing ions=10606 peptides=8822 proteins=1423 psms=47838 INFO[11:44:29] Saving INFO[11:44:30] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:44:30] Executing Filter v4.8.1 INFO[11:44:31] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:44:31] Processing peptide identification files INFO[11:44:31] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115\interact-S22049-Arjun-115.pep.xml INFO[11:44:35] 1+ Charge profile decoy=0 target=0 INFO[11:44:35] 2+ Charge profile decoy=281 target=39690 INFO[11:44:35] 3+ Charge profile decoy=76 target=11242 INFO[11:44:35] 4+ Charge profile decoy=3 target=463 INFO[11:44:35] 5+ Charge profile decoy=0 target=2 INFO[11:44:35] 6+ Charge profile decoy=0 target=0 INFO[11:44:35] Database search results ions=15585 peptides=12137 psms=51757 INFO[11:44:35] Converged to 0.70 % FDR with 51397 PSMs decoy=360 threshold=0.500509 total=51757 INFO[11:44:35] Converged to 1.00 % FDR with 11655 Peptides decoy=116 threshold=0.755074 total=11771 INFO[11:44:35] Converged to 0.99 % FDR with 15098 Ions decoy=150 threshold=0.696392 total=15248 INFO[11:44:37] Protein inference results decoy=2210 target=2337 INFO[11:44:37] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:44:38] Applying sequential FDR estimation ions=15240 peptides=11795 psms=51352 INFO[11:44:38] Converged to 0.10 % FDR with 51299 PSMs decoy=53 threshold=0.500509 total=51352 INFO[11:44:38] Converged to 0.39 % FDR with 11749 Peptides decoy=46 threshold=0.504298 total=11795 INFO[11:44:38] Converged to 0.31 % FDR with 15193 Ions decoy=47 threshold=0.504298 total=15240 INFO[11:44:39] Post processing identifications INFO[11:44:40] Assigning protein identifications to layers INFO[11:44:41] Processing protein inference INFO[11:44:42] Synchronizing PSMs and proteins INFO[11:44:42] Final report numbers after FDR filtering, and post-processing ions=15193 peptides=11749 proteins=1453 psms=51299 INFO[11:44:42] Saving INFO[11:44:43] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:44:43] Executing Filter v4.8.1 INFO[11:44:43] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:44:43] Processing peptide identification files INFO[11:44:43] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116\interact-S22049-Arjun-116.pep.xml INFO[11:44:47] 1+ Charge profile decoy=0 target=0 INFO[11:44:47] 2+ Charge profile decoy=239 target=36526 INFO[11:44:47] 3+ Charge profile decoy=55 target=9490 INFO[11:44:47] 4+ Charge profile decoy=2 target=288 INFO[11:44:47] 5+ Charge profile decoy=0 target=0 INFO[11:44:47] 6+ Charge profile decoy=0 target=0 INFO[11:44:48] Database search results ions=14421 peptides=11604 psms=46600 INFO[11:44:48] Converged to 0.64 % FDR with 46304 PSMs decoy=296 threshold=0.500142 total=46600 INFO[11:44:48] Converged to 1.00 % FDR with 11254 Peptides decoy=112 threshold=0.749705 total=11366 INFO[11:44:48] Converged to 0.99 % FDR with 14077 Ions decoy=140 threshold=0.707022 total=14217 INFO[11:44:49] Protein inference results decoy=2210 target=2337 INFO[11:44:49] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:44:50] Applying sequential FDR estimation ions=14143 peptides=11328 psms=46267 INFO[11:44:50] Converged to 0.10 % FDR with 46223 PSMs decoy=44 threshold=0.500266 total=46267 INFO[11:44:50] Converged to 0.27 % FDR with 11297 Peptides decoy=31 threshold=0.50271 total=11328 INFO[11:44:50] Converged to 0.23 % FDR with 14111 Ions decoy=32 threshold=0.50271 total=14143 INFO[11:44:51] Post processing identifications INFO[11:44:52] Assigning protein identifications to layers INFO[11:44:53] Processing protein inference INFO[11:44:54] Synchronizing PSMs and proteins INFO[11:44:54] Final report numbers after FDR filtering, and post-processing ions=14111 peptides=11297 proteins=1468 psms=46223 INFO[11:44:54] Saving INFO[11:44:54] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:44:55] Executing Filter v4.8.1 INFO[11:44:55] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:44:55] Processing peptide identification files INFO[11:44:55] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117\interact-S22049-Arjun-117.pep.xml INFO[11:45:00] 1+ Charge profile decoy=0 target=0 INFO[11:45:00] 2+ Charge profile decoy=266 target=38762 INFO[11:45:00] 3+ Charge profile decoy=58 target=10957 INFO[11:45:00] 4+ Charge profile decoy=5 target=443 INFO[11:45:00] 5+ Charge profile decoy=0 target=6 INFO[11:45:00] 6+ Charge profile decoy=0 target=0 INFO[11:45:00] Database search results ions=15215 peptides=12027 psms=50497 INFO[11:45:00] Converged to 0.66 % FDR with 50168 PSMs decoy=329 threshold=0.500009 total=50497 INFO[11:45:00] Converged to 1.00 % FDR with 11620 Peptides decoy=116 threshold=0.782084 total=11736 INFO[11:45:00] Converged to 1.00 % FDR with 14836 Ions decoy=148 threshold=0.706317 total=14984 INFO[11:45:01] Protein inference results decoy=2210 target=2337 INFO[11:45:02] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:45:03] Applying sequential FDR estimation ions=14901 peptides=11715 psms=50115 INFO[11:45:03] Converged to 0.07 % FDR with 50080 PSMs decoy=35 threshold=0.50025 total=50115 INFO[11:45:03] Converged to 0.23 % FDR with 11688 Peptides decoy=27 threshold=0.508097 total=11715 INFO[11:45:03] Converged to 0.19 % FDR with 14873 Ions decoy=28 threshold=0.501766 total=14901 INFO[11:45:03] Post processing identifications INFO[11:45:05] Assigning protein identifications to layers INFO[11:45:05] Processing protein inference INFO[11:45:06] Synchronizing PSMs and proteins INFO[11:45:07] Final report numbers after FDR filtering, and post-processing ions=14873 peptides=11688 proteins=1462 psms=50080 INFO[11:45:07] Saving INFO[11:45:07] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:45:08] Executing Filter v4.8.1 INFO[11:45:08] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:45:08] Processing peptide identification files INFO[11:45:08] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118\interact-S22049-Arjun-118.pep.xml INFO[11:45:12] 1+ Charge profile decoy=0 target=0 INFO[11:45:12] 2+ Charge profile decoy=305 target=42001 INFO[11:45:12] 3+ Charge profile decoy=39 target=6008 INFO[11:45:12] 4+ Charge profile decoy=0 target=74 INFO[11:45:12] 5+ Charge profile decoy=0 target=0 INFO[11:45:12] 6+ Charge profile decoy=0 target=0 INFO[11:45:12] Database search results ions=10580 peptides=8874 psms=48427 INFO[11:45:12] Converged to 0.72 % FDR with 48083 PSMs decoy=344 threshold=0.501387 total=48427 INFO[11:45:12] Converged to 1.00 % FDR with 8439 Peptides decoy=84 threshold=0.850256 total=8523 INFO[11:45:12] Converged to 1.00 % FDR with 10145 Ions decoy=101 threshold=0.813863 total=10246 INFO[11:45:14] Protein inference results decoy=2210 target=2337 INFO[11:45:14] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:45:15] Applying sequential FDR estimation ions=10278 peptides=8572 psms=48059 INFO[11:45:15] Converged to 0.09 % FDR with 48017 PSMs decoy=42 threshold=0.501387 total=48059 INFO[11:45:15] Converged to 0.30 % FDR with 8546 Peptides decoy=26 threshold=0.50784 total=8572 INFO[11:45:15] Converged to 0.26 % FDR with 10251 Ions decoy=27 threshold=0.506206 total=10278 INFO[11:45:15] Post processing identifications INFO[11:45:17] Assigning protein identifications to layers INFO[11:45:17] Processing protein inference INFO[11:45:18] Synchronizing PSMs and proteins INFO[11:45:18] Final report numbers after FDR filtering, and post-processing ions=10251 peptides=8546 proteins=1432 psms=48017 INFO[11:45:18] Saving INFO[11:45:19] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:45:19] Executing Filter v4.8.1 INFO[11:45:20] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:45:20] Processing peptide identification files INFO[11:45:20] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119\interact-S22049-Arjun-119.pep.xml INFO[11:45:24] 1+ Charge profile decoy=0 target=0 INFO[11:45:24] 2+ Charge profile decoy=280 target=37992 INFO[11:45:24] 3+ Charge profile decoy=64 target=11243 INFO[11:45:24] 4+ Charge profile decoy=4 target=466 INFO[11:45:24] 5+ Charge profile decoy=0 target=4 INFO[11:45:24] 6+ Charge profile decoy=0 target=0 INFO[11:45:24] Database search results ions=15480 peptides=12301 psms=50053 INFO[11:45:24] Converged to 0.70 % FDR with 49705 PSMs decoy=348 threshold=0.500402 total=50053 INFO[11:45:24] Converged to 1.00 % FDR with 11852 Peptides decoy=118 threshold=0.804946 total=11970 INFO[11:45:24] Converged to 1.00 % FDR with 15058 Ions decoy=150 threshold=0.727804 total=15208 INFO[11:45:26] Protein inference results decoy=2210 target=2337 INFO[11:45:26] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:45:27] Applying sequential FDR estimation ions=15178 peptides=11999 psms=49699 INFO[11:45:27] Converged to 0.11 % FDR with 49643 PSMs decoy=56 threshold=0.500432 total=49699 INFO[11:45:27] Converged to 0.33 % FDR with 11959 Peptides decoy=40 threshold=0.500789 total=11999 INFO[11:45:27] Converged to 0.27 % FDR with 15137 Ions decoy=41 threshold=0.500789 total=15178 INFO[11:45:27] Post processing identifications INFO[11:45:29] Assigning protein identifications to layers INFO[11:45:29] Processing protein inference INFO[11:45:30] Synchronizing PSMs and proteins INFO[11:45:31] Final report numbers after FDR filtering, and post-processing ions=15137 peptides=11959 proteins=1466 psms=49643 INFO[11:45:31] Saving INFO[11:45:31] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:45:32] Executing Filter v4.8.1 INFO[11:45:32] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:45:32] Processing peptide identification files INFO[11:45:32] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12\interact-S22049-Arjun-12.pep.xml INFO[11:45:38] 1+ Charge profile decoy=0 target=0 INFO[11:45:38] 2+ Charge profile decoy=266 target=41980 INFO[11:45:38] 3+ Charge profile decoy=85 target=17477 INFO[11:45:38] 4+ Charge profile decoy=5 target=1400 INFO[11:45:38] 5+ Charge profile decoy=1 target=121 INFO[11:45:38] 6+ Charge profile decoy=0 target=1 INFO[11:45:38] Database search results ions=18823 peptides=14035 psms=61336 INFO[11:45:38] Converged to 0.59 % FDR with 60979 PSMs decoy=357 threshold=0.500017 total=61336 INFO[11:45:38] Converged to 1.00 % FDR with 13559 Peptides decoy=135 threshold=0.800372 total=13694 INFO[11:45:38] Converged to 1.00 % FDR with 18379 Ions decoy=183 threshold=0.72586 total=18562 INFO[11:45:40] Protein inference results decoy=2210 target=2337 INFO[11:45:40] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:45:41] Applying sequential FDR estimation ions=18465 peptides=13680 psms=60928 INFO[11:45:41] Converged to 0.08 % FDR with 60880 PSMs decoy=48 threshold=0.500017 total=60928 INFO[11:45:41] Converged to 0.32 % FDR with 13637 Peptides decoy=43 threshold=0.502456 total=13680 INFO[11:45:41] Converged to 0.23 % FDR with 18422 Ions decoy=43 threshold=0.502456 total=18465 INFO[11:45:41] Post processing identifications INFO[11:45:44] Assigning protein identifications to layers INFO[11:45:44] Processing protein inference INFO[11:45:45] Synchronizing PSMs and proteins INFO[11:45:45] Final report numbers after FDR filtering, and post-processing ions=18422 peptides=13637 proteins=1490 psms=60880 INFO[11:45:45] Saving INFO[11:45:46] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:45:46] Executing Filter v4.8.1 INFO[11:45:47] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:45:47] Processing peptide identification files INFO[11:45:47] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120\interact-S22049-Arjun-120.pep.xml INFO[11:45:51] 1+ Charge profile decoy=0 target=0 INFO[11:45:51] 2+ Charge profile decoy=295 target=37837 INFO[11:45:51] 3+ Charge profile decoy=54 target=9569 INFO[11:45:51] 4+ Charge profile decoy=3 target=272 INFO[11:45:51] 5+ Charge profile decoy=0 target=1 INFO[11:45:51] 6+ Charge profile decoy=0 target=0 INFO[11:45:51] Database search results ions=14036 peptides=11274 psms=48031 INFO[11:45:51] Converged to 0.74 % FDR with 47679 PSMs decoy=352 threshold=0.500102 total=48031 INFO[11:45:51] Converged to 1.00 % FDR with 10832 Peptides decoy=108 threshold=0.774451 total=10940 INFO[11:45:51] Converged to 0.99 % FDR with 13598 Ions decoy=135 threshold=0.734029 total=13733 INFO[11:45:53] Protein inference results decoy=2210 target=2337 INFO[11:45:53] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:45:54] Applying sequential FDR estimation ions=13722 peptides=10962 psms=47653 INFO[11:45:54] Converged to 0.11 % FDR with 47602 PSMs decoy=51 threshold=0.500102 total=47653 INFO[11:45:54] Converged to 0.31 % FDR with 10928 Peptides decoy=34 threshold=0.500102 total=10962 INFO[11:45:54] Converged to 0.26 % FDR with 13687 Ions decoy=35 threshold=0.500102 total=13722 INFO[11:45:54] Post processing identifications INFO[11:45:56] Assigning protein identifications to layers INFO[11:45:56] Processing protein inference INFO[11:45:57] Synchronizing PSMs and proteins INFO[11:45:57] Final report numbers after FDR filtering, and post-processing ions=13687 peptides=10928 proteins=1481 psms=47602 INFO[11:45:57] Saving INFO[11:45:58] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:45:58] Executing Filter v4.8.1 INFO[11:45:59] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:45:59] Processing peptide identification files INFO[11:45:59] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121\interact-S22049-Arjun-121.pep.xml INFO[11:46:03] 1+ Charge profile decoy=0 target=0 INFO[11:46:03] 2+ Charge profile decoy=287 target=39334 INFO[11:46:03] 3+ Charge profile decoy=62 target=10937 INFO[11:46:03] 4+ Charge profile decoy=2 target=406 INFO[11:46:03] 5+ Charge profile decoy=0 target=5 INFO[11:46:03] 6+ Charge profile decoy=0 target=0 INFO[11:46:03] Database search results ions=15444 peptides=12079 psms=51033 INFO[11:46:03] Converged to 0.69 % FDR with 50682 PSMs decoy=351 threshold=0.500575 total=51033 INFO[11:46:03] Converged to 1.00 % FDR with 11643 Peptides decoy=116 threshold=0.798783 total=11759 INFO[11:46:03] Converged to 1.00 % FDR with 15022 Ions decoy=150 threshold=0.731748 total=15172 INFO[11:46:05] Protein inference results decoy=2210 target=2337 INFO[11:46:05] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:46:06] Applying sequential FDR estimation ions=15132 peptides=11769 psms=50669 INFO[11:46:06] Converged to 0.10 % FDR with 50618 PSMs decoy=51 threshold=0.500575 total=50669 INFO[11:46:06] Converged to 0.29 % FDR with 11735 Peptides decoy=34 threshold=0.500575 total=11769 INFO[11:46:06] Converged to 0.24 % FDR with 15096 Ions decoy=36 threshold=0.500575 total=15132 INFO[11:46:07] Post processing identifications INFO[11:46:08] Assigning protein identifications to layers INFO[11:46:09] Processing protein inference INFO[11:46:10] Synchronizing PSMs and proteins INFO[11:46:10] Final report numbers after FDR filtering, and post-processing ions=15096 peptides=11735 proteins=1482 psms=50618 INFO[11:46:10] Saving INFO[11:46:10] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:46:11] Executing Filter v4.8.1 INFO[11:46:11] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:46:11] Processing peptide identification files INFO[11:46:11] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122\interact-S22049-Arjun-122.pep.xml INFO[11:46:16] 1+ Charge profile decoy=0 target=0 INFO[11:46:16] 2+ Charge profile decoy=323 target=40943 INFO[11:46:16] 3+ Charge profile decoy=50 target=9430 INFO[11:46:16] 4+ Charge profile decoy=1 target=177 INFO[11:46:16] 5+ Charge profile decoy=0 target=4 INFO[11:46:16] 6+ Charge profile decoy=0 target=0 INFO[11:46:16] Database search results ions=12671 peptides=10327 psms=50928 INFO[11:46:16] Converged to 0.74 % FDR with 50554 PSMs decoy=374 threshold=0.50173 total=50928 INFO[11:46:16] Converged to 1.00 % FDR with 9842 Peptides decoy=98 threshold=0.795933 total=9940 INFO[11:46:16] Converged to 0.99 % FDR with 12186 Ions decoy=121 threshold=0.760482 total=12307 INFO[11:46:17] Protein inference results decoy=2210 target=2337 INFO[11:46:18] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:46:19] Applying sequential FDR estimation ions=12331 peptides=9989 psms=50518 INFO[11:46:19] Converged to 0.08 % FDR with 50477 PSMs decoy=41 threshold=0.50173 total=50518 INFO[11:46:19] Converged to 0.32 % FDR with 9957 Peptides decoy=32 threshold=0.50173 total=9989 INFO[11:46:19] Converged to 0.27 % FDR with 12298 Ions decoy=33 threshold=0.50173 total=12331 INFO[11:46:19] Post processing identifications INFO[11:46:21] Assigning protein identifications to layers INFO[11:46:21] Processing protein inference INFO[11:46:22] Synchronizing PSMs and proteins INFO[11:46:22] Final report numbers after FDR filtering, and post-processing ions=12298 peptides=9957 proteins=1466 psms=50477 INFO[11:46:22] Saving INFO[11:46:23] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:46:23] Executing Filter v4.8.1 INFO[11:46:24] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:46:24] Processing peptide identification files INFO[11:46:24] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\interact-S22049-Arjun-123.pep.xml INFO[11:46:28] 1+ Charge profile decoy=0 target=0 INFO[11:46:28] 2+ Charge profile decoy=285 target=41099 INFO[11:46:28] 3+ Charge profile decoy=56 target=11383 INFO[11:46:28] 4+ Charge profile decoy=2 target=420 INFO[11:46:28] 5+ Charge profile decoy=0 target=5 INFO[11:46:28] 6+ Charge profile decoy=0 target=0 INFO[11:46:28] Database search results ions=15823 peptides=12390 psms=53250 INFO[11:46:28] Converged to 0.65 % FDR with 52907 PSMs decoy=343 threshold=0.5 total=53250 INFO[11:46:28] Converged to 1.00 % FDR with 11952 Peptides decoy=119 threshold=0.81266 total=12071 INFO[11:46:28] Converged to 1.00 % FDR with 15405 Ions decoy=154 threshold=0.748878 total=15559 INFO[11:46:30] Protein inference results decoy=2210 target=2337 INFO[11:46:30] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:46:31] Applying sequential FDR estimation ions=15504 peptides=12073 psms=52877 INFO[11:46:31] Converged to 0.08 % FDR with 52837 PSMs decoy=40 threshold=0.5 total=52877 INFO[11:46:31] Converged to 0.25 % FDR with 12043 Peptides decoy=30 threshold=0.5 total=12073 INFO[11:46:31] Converged to 0.20 % FDR with 15473 Ions decoy=31 threshold=0.5 total=15504 INFO[11:46:32] Post processing identifications INFO[11:46:34] Assigning protein identifications to layers INFO[11:46:34] Processing protein inference INFO[11:46:35] Synchronizing PSMs and proteins INFO[11:46:35] Final report numbers after FDR filtering, and post-processing ions=15473 peptides=12043 proteins=1487 psms=52837 INFO[11:46:35] Saving INFO[11:46:36] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:46:36] Executing Filter v4.8.1 INFO[11:46:36] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:46:36] Processing peptide identification files INFO[11:46:36] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125\interact-S22049-Arjun-125.pep.xml INFO[11:46:41] 1+ Charge profile decoy=0 target=0 INFO[11:46:41] 2+ Charge profile decoy=284 target=41653 INFO[11:46:41] 3+ Charge profile decoy=62 target=13109 INFO[11:46:41] 4+ Charge profile decoy=3 target=596 INFO[11:46:41] 5+ Charge profile decoy=1 target=11 INFO[11:46:41] 6+ Charge profile decoy=0 target=0 INFO[11:46:41] Database search results ions=16785 peptides=12482 psms=55719 INFO[11:46:41] Converged to 0.63 % FDR with 55369 PSMs decoy=350 threshold=0.5007 total=55719 INFO[11:46:41] Converged to 1.00 % FDR with 12047 Peptides decoy=120 threshold=0.785177 total=12167 INFO[11:46:41] Converged to 1.00 % FDR with 16362 Ions decoy=163 threshold=0.715471 total=16525 INFO[11:46:43] Protein inference results decoy=2210 target=2337 INFO[11:46:43] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:46:45] Applying sequential FDR estimation ions=16462 peptides=12163 psms=55345 INFO[11:46:45] Converged to 0.08 % FDR with 55303 PSMs decoy=42 threshold=0.5007 total=55345 INFO[11:46:45] Converged to 0.27 % FDR with 12130 Peptides decoy=33 threshold=0.500721 total=12163 INFO[11:46:45] Converged to 0.21 % FDR with 16428 Ions decoy=34 threshold=0.500721 total=16462 INFO[11:46:45] Post processing identifications INFO[11:46:47] Assigning protein identifications to layers INFO[11:46:47] Processing protein inference INFO[11:46:48] Synchronizing PSMs and proteins INFO[11:46:49] Final report numbers after FDR filtering, and post-processing ions=16428 peptides=12130 proteins=1479 psms=55303 INFO[11:46:49] Saving INFO[11:46:49] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:46:50] Executing Filter v4.8.1 INFO[11:46:50] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:46:50] Processing peptide identification files INFO[11:46:50] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126\interact-S22049-Arjun-126.pep.xml INFO[11:46:54] 1+ Charge profile decoy=0 target=0 INFO[11:46:54] 2+ Charge profile decoy=296 target=34707 INFO[11:46:54] 3+ Charge profile decoy=40 target=8341 INFO[11:46:54] 4+ Charge profile decoy=3 target=236 INFO[11:46:54] 5+ Charge profile decoy=0 target=3 INFO[11:46:54] 6+ Charge profile decoy=0 target=0 INFO[11:46:54] Database search results ions=13043 peptides=10182 psms=43626 INFO[11:46:54] Converged to 0.78 % FDR with 43287 PSMs decoy=339 threshold=0.500188 total=43626 INFO[11:46:54] Converged to 1.00 % FDR with 9731 Peptides decoy=97 threshold=0.809009 total=9828 INFO[11:46:54] Converged to 0.99 % FDR with 12589 Ions decoy=125 threshold=0.751874 total=12714 INFO[11:46:56] Protein inference results decoy=2210 target=2337 INFO[11:46:56] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:46:57] Applying sequential FDR estimation ions=12724 peptides=9868 psms=43250 INFO[11:46:57] Converged to 0.09 % FDR with 43209 PSMs decoy=41 threshold=0.500188 total=43250 INFO[11:46:57] Converged to 0.33 % FDR with 9836 Peptides decoy=32 threshold=0.501494 total=9868 INFO[11:46:57] Converged to 0.26 % FDR with 12691 Ions decoy=33 threshold=0.501494 total=12724 INFO[11:46:57] Post processing identifications INFO[11:46:59] Assigning protein identifications to layers INFO[11:46:59] Processing protein inference INFO[11:47:00] Synchronizing PSMs and proteins INFO[11:47:00] Final report numbers after FDR filtering, and post-processing ions=12691 peptides=9836 proteins=1424 psms=43209 INFO[11:47:00] Saving INFO[11:47:01] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:47:01] Executing Filter v4.8.1 INFO[11:47:02] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:47:02] Processing peptide identification files INFO[11:47:02] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127\interact-S22049-Arjun-127.pep.xml INFO[11:47:06] 1+ Charge profile decoy=0 target=0 INFO[11:47:06] 2+ Charge profile decoy=287 target=35730 INFO[11:47:06] 3+ Charge profile decoy=48 target=8520 INFO[11:47:06] 4+ Charge profile decoy=2 target=168 INFO[11:47:06] 5+ Charge profile decoy=0 target=0 INFO[11:47:06] 6+ Charge profile decoy=0 target=0 INFO[11:47:06] Database search results ions=12991 peptides=10277 psms=44755 INFO[11:47:06] Converged to 0.76 % FDR with 44418 PSMs decoy=337 threshold=0.500003 total=44755 INFO[11:47:06] Converged to 1.00 % FDR with 9817 Peptides decoy=98 threshold=0.857968 total=9915 INFO[11:47:06] Converged to 1.00 % FDR with 12548 Ions decoy=125 threshold=0.818818 total=12673 INFO[11:47:07] Protein inference results decoy=2210 target=2337 INFO[11:47:07] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:47:08] Applying sequential FDR estimation ions=12688 peptides=9974 psms=44390 INFO[11:47:09] Converged to 0.10 % FDR with 44344 PSMs decoy=46 threshold=0.500003 total=44390 INFO[11:47:09] Converged to 0.33 % FDR with 9941 Peptides decoy=33 threshold=0.500871 total=9974 INFO[11:47:09] Converged to 0.27 % FDR with 12654 Ions decoy=34 threshold=0.500871 total=12688 INFO[11:47:09] Post processing identifications INFO[11:47:10] Assigning protein identifications to layers INFO[11:47:10] Processing protein inference INFO[11:47:12] Synchronizing PSMs and proteins INFO[11:47:12] Final report numbers after FDR filtering, and post-processing ions=12654 peptides=9941 proteins=1450 psms=44344 INFO[11:47:12] Saving INFO[11:47:12] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:47:13] Executing Filter v4.8.1 INFO[11:47:13] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:47:13] Processing peptide identification files INFO[11:47:13] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128\interact-S22049-Arjun-128.pep.xml INFO[11:47:17] 1+ Charge profile decoy=0 target=0 INFO[11:47:17] 2+ Charge profile decoy=285 target=38060 INFO[11:47:17] 3+ Charge profile decoy=40 target=9480 INFO[11:47:17] 4+ Charge profile decoy=1 target=291 INFO[11:47:17] 5+ Charge profile decoy=0 target=1 INFO[11:47:17] 6+ Charge profile decoy=0 target=0 INFO[11:47:17] Database search results ions=14297 peptides=11320 psms=48158 INFO[11:47:17] Converged to 0.68 % FDR with 47832 PSMs decoy=326 threshold=0.50005 total=48158 INFO[11:47:17] Converged to 1.00 % FDR with 10919 Peptides decoy=109 threshold=0.797993 total=11028 INFO[11:47:17] Converged to 0.99 % FDR with 13899 Ions decoy=138 threshold=0.737427 total=14037 INFO[11:47:19] Protein inference results decoy=2210 target=2337 INFO[11:47:19] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:47:20] Applying sequential FDR estimation ions=13992 peptides=11016 psms=47810 INFO[11:47:20] Converged to 0.10 % FDR with 47760 PSMs decoy=50 threshold=0.500456 total=47810 INFO[11:47:20] Converged to 0.28 % FDR with 10985 Peptides decoy=31 threshold=0.501407 total=11016 INFO[11:47:20] Converged to 0.24 % FDR with 13959 Ions decoy=33 threshold=0.501407 total=13992 INFO[11:47:21] Post processing identifications INFO[11:47:22] Assigning protein identifications to layers INFO[11:47:22] Processing protein inference INFO[11:47:24] Synchronizing PSMs and proteins INFO[11:47:24] Final report numbers after FDR filtering, and post-processing ions=13959 peptides=10985 proteins=1459 psms=47760 INFO[11:47:24] Saving INFO[11:47:24] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:47:25] Executing Filter v4.8.1 INFO[11:47:26] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:47:26] Processing peptide identification files INFO[11:47:26] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129\interact-S22049-Arjun-129.pep.xml INFO[11:47:29] 1+ Charge profile decoy=0 target=0 INFO[11:47:29] 2+ Charge profile decoy=284 target=36171 INFO[11:47:29] 3+ Charge profile decoy=48 target=7226 INFO[11:47:29] 4+ Charge profile decoy=1 target=113 INFO[11:47:29] 5+ Charge profile decoy=0 target=0 INFO[11:47:29] 6+ Charge profile decoy=0 target=0 INFO[11:47:29] Database search results ions=11525 peptides=9516 psms=43843 INFO[11:47:29] Converged to 0.77 % FDR with 43510 PSMs decoy=333 threshold=0.500066 total=43843 INFO[11:47:29] Converged to 1.00 % FDR with 9122 Peptides decoy=91 threshold=0.78531 total=9213 INFO[11:47:29] Converged to 1.00 % FDR with 11134 Ions decoy=111 threshold=0.740617 total=11245 INFO[11:47:31] Protein inference results decoy=2210 target=2337 INFO[11:47:31] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:47:32] Applying sequential FDR estimation ions=11231 peptides=9223 psms=43466 INFO[11:47:32] Converged to 0.10 % FDR with 43424 PSMs decoy=42 threshold=0.50059 total=43466 INFO[11:47:32] Converged to 0.23 % FDR with 9202 Peptides decoy=21 threshold=0.500622 total=9223 INFO[11:47:32] Converged to 0.20 % FDR with 11209 Ions decoy=22 threshold=0.500622 total=11231 INFO[11:47:32] Post processing identifications INFO[11:47:34] Assigning protein identifications to layers INFO[11:47:34] Processing protein inference INFO[11:47:35] Synchronizing PSMs and proteins INFO[11:47:35] Final report numbers after FDR filtering, and post-processing ions=11209 peptides=9202 proteins=1446 psms=43424 INFO[11:47:35] Saving INFO[11:47:36] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:47:37] Executing Filter v4.8.1 INFO[11:47:37] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:47:37] Processing peptide identification files INFO[11:47:37] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13\interact-S22049-Arjun-13.pep.xml INFO[11:47:42] 1+ Charge profile decoy=0 target=0 INFO[11:47:42] 2+ Charge profile decoy=322 target=46029 INFO[11:47:42] 3+ Charge profile decoy=46 target=9451 INFO[11:47:42] 4+ Charge profile decoy=1 target=163 INFO[11:47:42] 5+ Charge profile decoy=0 target=0 INFO[11:47:42] 6+ Charge profile decoy=0 target=0 INFO[11:47:42] Database search results ions=11787 peptides=9677 psms=56012 INFO[11:47:42] Converged to 0.66 % FDR with 55643 PSMs decoy=369 threshold=0.50113 total=56012 INFO[11:47:42] Converged to 0.99 % FDR with 9189 Peptides decoy=91 threshold=0.894229 total=9280 INFO[11:47:42] Converged to 1.00 % FDR with 11319 Ions decoy=113 threshold=0.8481 total=11432 INFO[11:47:44] Protein inference results decoy=2210 target=2337 INFO[11:47:44] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:47:45] Applying sequential FDR estimation ions=11445 peptides=9336 psms=55595 INFO[11:47:45] Converged to 0.09 % FDR with 55547 PSMs decoy=48 threshold=0.50113 total=55595 INFO[11:47:45] Converged to 0.37 % FDR with 9302 Peptides decoy=34 threshold=0.50113 total=9336 INFO[11:47:45] Converged to 0.31 % FDR with 11410 Ions decoy=35 threshold=0.50113 total=11445 INFO[11:47:45] Post processing identifications INFO[11:47:47] Assigning protein identifications to layers INFO[11:47:47] Processing protein inference INFO[11:47:48] Synchronizing PSMs and proteins INFO[11:47:49] Final report numbers after FDR filtering, and post-processing ions=11410 peptides=9302 proteins=1463 psms=55547 INFO[11:47:49] Saving INFO[11:47:49] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:47:50] Executing Filter v4.8.1 INFO[11:47:50] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:47:50] Processing peptide identification files INFO[11:47:50] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130\interact-S22049-Arjun-130.pep.xml INFO[11:47:55] 1+ Charge profile decoy=0 target=0 INFO[11:47:55] 2+ Charge profile decoy=255 target=41317 INFO[11:47:55] 3+ Charge profile decoy=59 target=12327 INFO[11:47:55] 4+ Charge profile decoy=3 target=588 INFO[11:47:55] 5+ Charge profile decoy=1 target=14 INFO[11:47:55] 6+ Charge profile decoy=0 target=0 INFO[11:47:55] Database search results ions=15897 peptides=12460 psms=54564 INFO[11:47:55] Converged to 0.59 % FDR with 54246 PSMs decoy=318 threshold=0.50014 total=54564 INFO[11:47:55] Converged to 0.99 % FDR with 12065 Peptides decoy=120 threshold=0.804244 total=12185 INFO[11:47:55] Converged to 1.00 % FDR with 15519 Ions decoy=155 threshold=0.726073 total=15674 INFO[11:47:57] Protein inference results decoy=2210 target=2337 INFO[11:47:57] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:47:58] Applying sequential FDR estimation ions=15600 peptides=12166 psms=54210 INFO[11:47:58] Converged to 0.08 % FDR with 54167 PSMs decoy=43 threshold=0.502315 total=54210 INFO[11:47:58] Converged to 0.29 % FDR with 12131 Peptides decoy=35 threshold=0.505467 total=12166 INFO[11:47:58] Converged to 0.23 % FDR with 15564 Ions decoy=36 threshold=0.505467 total=15600 INFO[11:47:59] Post processing identifications INFO[11:48:01] Assigning protein identifications to layers INFO[11:48:01] Processing protein inference INFO[11:48:02] Synchronizing PSMs and proteins INFO[11:48:02] Final report numbers after FDR filtering, and post-processing ions=15564 peptides=12131 proteins=1466 psms=54167 INFO[11:48:02] Saving INFO[11:48:03] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:48:03] Executing Filter v4.8.1 INFO[11:48:04] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:48:04] Processing peptide identification files INFO[11:48:04] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131\interact-S22049-Arjun-131.pep.xml INFO[11:48:08] 1+ Charge profile decoy=0 target=0 INFO[11:48:08] 2+ Charge profile decoy=274 target=38918 INFO[11:48:08] 3+ Charge profile decoy=57 target=11016 INFO[11:48:08] 4+ Charge profile decoy=4 target=397 INFO[11:48:08] 5+ Charge profile decoy=0 target=4 INFO[11:48:08] 6+ Charge profile decoy=0 target=0 INFO[11:48:08] Database search results ions=15727 peptides=12206 psms=50670 INFO[11:48:08] Converged to 0.67 % FDR with 50335 PSMs decoy=335 threshold=0.50099 total=50670 INFO[11:48:08] Converged to 0.99 % FDR with 11782 Peptides decoy=117 threshold=0.775798 total=11899 INFO[11:48:08] Converged to 1.00 % FDR with 15315 Ions decoy=153 threshold=0.693914 total=15468 INFO[11:48:10] Protein inference results decoy=2210 target=2337 INFO[11:48:10] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:48:11] Applying sequential FDR estimation ions=15406 peptides=11888 psms=50300 INFO[11:48:11] Converged to 0.10 % FDR with 50249 PSMs decoy=51 threshold=0.50099 total=50300 INFO[11:48:11] Converged to 0.31 % FDR with 11851 Peptides decoy=37 threshold=0.501171 total=11888 INFO[11:48:11] Converged to 0.25 % FDR with 15368 Ions decoy=38 threshold=0.501171 total=15406 INFO[11:48:12] Post processing identifications INFO[11:48:13] Assigning protein identifications to layers INFO[11:48:14] Processing protein inference INFO[11:48:15] Synchronizing PSMs and proteins INFO[11:48:15] Final report numbers after FDR filtering, and post-processing ions=15368 peptides=11851 proteins=1471 psms=50249 INFO[11:48:15] Saving INFO[11:48:16] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:48:16] Executing Filter v4.8.1 INFO[11:48:16] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:48:16] Processing peptide identification files INFO[11:48:16] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132\interact-S22049-Arjun-132.pep.xml INFO[11:48:21] 1+ Charge profile decoy=0 target=0 INFO[11:48:21] 2+ Charge profile decoy=278 target=42553 INFO[11:48:21] 3+ Charge profile decoy=65 target=13434 INFO[11:48:21] 4+ Charge profile decoy=3 target=713 INFO[11:48:21] 5+ Charge profile decoy=1 target=17 INFO[11:48:21] 6+ Charge profile decoy=0 target=0 INFO[11:48:21] Database search results ions=16150 peptides=12561 psms=57064 INFO[11:48:22] Converged to 0.61 % FDR with 56717 PSMs decoy=347 threshold=0.500327 total=57064 INFO[11:48:22] Converged to 1.00 % FDR with 12112 Peptides decoy=121 threshold=0.811209 total=12233 INFO[11:48:22] Converged to 1.00 % FDR with 15731 Ions decoy=157 threshold=0.757601 total=15888 INFO[11:48:23] Protein inference results decoy=2210 target=2337 INFO[11:48:23] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:48:25] Applying sequential FDR estimation ions=15832 peptides=12243 psms=56692 INFO[11:48:25] Converged to 0.08 % FDR with 56647 PSMs decoy=45 threshold=0.500327 total=56692 INFO[11:48:25] Converged to 0.27 % FDR with 12210 Peptides decoy=33 threshold=0.501342 total=12243 INFO[11:48:25] Converged to 0.22 % FDR with 15798 Ions decoy=34 threshold=0.501342 total=15832 INFO[11:48:25] Post processing identifications INFO[11:48:27] Assigning protein identifications to layers INFO[11:48:27] Processing protein inference INFO[11:48:28] Synchronizing PSMs and proteins INFO[11:48:29] Final report numbers after FDR filtering, and post-processing ions=15798 peptides=12210 proteins=1454 psms=56647 INFO[11:48:29] Saving INFO[11:48:29] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:48:30] Executing Filter v4.8.1 INFO[11:48:30] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:48:30] Processing peptide identification files INFO[11:48:30] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133\interact-S22049-Arjun-133.pep.xml INFO[11:48:35] 1+ Charge profile decoy=0 target=0 INFO[11:48:35] 2+ Charge profile decoy=349 target=36502 INFO[11:48:35] 3+ Charge profile decoy=55 target=10713 INFO[11:48:35] 4+ Charge profile decoy=5 target=447 INFO[11:48:35] 5+ Charge profile decoy=0 target=5 INFO[11:48:35] 6+ Charge profile decoy=0 target=0 INFO[11:48:35] Database search results ions=15440 peptides=11809 psms=48076 INFO[11:48:35] Converged to 0.86 % FDR with 47667 PSMs decoy=409 threshold=0.500985 total=48076 INFO[11:48:35] Converged to 0.99 % FDR with 11263 Peptides decoy=112 threshold=0.801034 total=11375 INFO[11:48:35] Converged to 1.00 % FDR with 14916 Ions decoy=149 threshold=0.699952 total=15065 INFO[11:48:36] Protein inference results decoy=2210 target=2337 INFO[11:48:36] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:48:38] Applying sequential FDR estimation ions=15063 peptides=11437 psms=47622 INFO[11:48:38] Converged to 0.09 % FDR with 47580 PSMs decoy=42 threshold=0.500985 total=47622 INFO[11:48:38] Converged to 0.31 % FDR with 11402 Peptides decoy=35 threshold=0.501622 total=11437 INFO[11:48:38] Converged to 0.24 % FDR with 15027 Ions decoy=36 threshold=0.501622 total=15063 INFO[11:48:38] Post processing identifications INFO[11:48:40] Assigning protein identifications to layers INFO[11:48:40] Processing protein inference INFO[11:48:41] Synchronizing PSMs and proteins INFO[11:48:41] Final report numbers after FDR filtering, and post-processing ions=15027 peptides=11402 proteins=1446 psms=47580 INFO[11:48:41] Saving INFO[11:48:42] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:48:42] Executing Filter v4.8.1 INFO[11:48:43] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:48:43] Processing peptide identification files INFO[11:48:43] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134\interact-S22049-Arjun-134.pep.xml INFO[11:48:43] 1+ Charge profile decoy=0 target=0 INFO[11:48:43] 2+ Charge profile decoy=32 target=5561 INFO[11:48:43] 3+ Charge profile decoy=1 target=217 INFO[11:48:43] 4+ Charge profile decoy=0 target=21 INFO[11:48:43] 5+ Charge profile decoy=0 target=1 INFO[11:48:43] 6+ Charge profile decoy=0 target=0 INFO[11:48:43] Database search results ions=1767 peptides=1606 psms=5833 INFO[11:48:43] Converged to 0.57 % FDR with 5800 PSMs decoy=33 threshold=0.501596 total=5833 INFO[11:48:43] Converged to 0.95 % FDR with 1578 Peptides decoy=15 threshold=0.704664 total=1593 INFO[11:48:43] Converged to 0.98 % FDR with 1737 Ions decoy=17 threshold=0.689092 total=1754 INFO[11:48:45] Protein inference results decoy=2210 target=2337 INFO[11:48:45] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:48:45] Applying sequential FDR estimation ions=1738 peptides=1578 psms=5786 INFO[11:48:45] Converged to 0.07 % FDR with 5782 PSMs decoy=4 threshold=0.501596 total=5786 INFO[11:48:45] Converged to 0.13 % FDR with 1576 Peptides decoy=2 threshold=0.563768 total=1578 INFO[11:48:45] Converged to 0.12 % FDR with 1736 Ions decoy=2 threshold=0.563768 total=1738 INFO[11:48:45] Post processing identifications INFO[11:48:45] Assigning protein identifications to layers INFO[11:48:45] Processing protein inference INFO[11:48:46] Synchronizing PSMs and proteins INFO[11:48:47] Final report numbers after FDR filtering, and post-processing ions=1736 peptides=1576 proteins=682 psms=5782 INFO[11:48:47] Saving INFO[11:48:47] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:48:47] Executing Filter v4.8.1 INFO[11:48:48] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:48:48] Processing peptide identification files INFO[11:48:48] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135\interact-S22049-Arjun-135.pep.xml INFO[11:48:48] 1+ Charge profile decoy=0 target=0 INFO[11:48:48] 2+ Charge profile decoy=54 target=3760 INFO[11:48:48] 3+ Charge profile decoy=13 target=708 INFO[11:48:48] 4+ Charge profile decoy=1 target=63 INFO[11:48:48] 5+ Charge profile decoy=0 target=3 INFO[11:48:48] 6+ Charge profile decoy=0 target=0 INFO[11:48:48] Database search results ions=1800 peptides=1615 psms=4602 INFO[11:48:48] Converged to 0.98 % FDR with 4487 PSMs decoy=44 threshold=0.693237 total=4531 INFO[11:48:48] Converged to 1.00 % FDR with 1507 Peptides decoy=15 threshold=0.840258 total=1522 INFO[11:48:48] Converged to 0.95 % FDR with 1690 Ions decoy=16 threshold=0.818483 total=1706 INFO[11:48:50] Protein inference results decoy=2210 target=2337 INFO[11:48:50] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:48:50] Applying sequential FDR estimation ions=1715 peptides=1534 psms=4480 INFO[11:48:50] Converged to 0.02 % FDR with 4479 PSMs decoy=1 threshold=0.693237 total=4480 INFO[11:48:50] Converged to 0.07 % FDR with 1533 Peptides decoy=1 threshold=0.697411 total=1534 INFO[11:48:50] Converged to 0.06 % FDR with 1714 Ions decoy=1 threshold=0.697411 total=1715 INFO[11:48:50] Post processing identifications INFO[11:48:50] Assigning protein identifications to layers INFO[11:48:50] Processing protein inference INFO[11:48:51] Synchronizing PSMs and proteins INFO[11:48:52] Final report numbers after FDR filtering, and post-processing ions=1714 peptides=1533 proteins=449 psms=4479 INFO[11:48:52] Saving INFO[11:48:52] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:48:52] Executing Filter v4.8.1 INFO[11:48:52] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:48:52] Processing peptide identification files INFO[11:48:52] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136\interact-S22049-Arjun-136.pep.xml INFO[11:48:57] 1+ Charge profile decoy=0 target=0 INFO[11:48:57] 2+ Charge profile decoy=238 target=41102 INFO[11:48:57] 3+ Charge profile decoy=56 target=10783 INFO[11:48:57] 4+ Charge profile decoy=1 target=496 INFO[11:48:57] 5+ Charge profile decoy=0 target=23 INFO[11:48:57] 6+ Charge profile decoy=0 target=0 INFO[11:48:57] Database search results ions=14198 peptides=11369 psms=52699 INFO[11:48:57] Converged to 0.56 % FDR with 52404 PSMs decoy=295 threshold=0.500279 total=52699 INFO[11:48:57] Converged to 1.00 % FDR with 11011 Peptides decoy=110 threshold=0.789573 total=11121 INFO[11:48:57] Converged to 1.00 % FDR with 13848 Ions decoy=138 threshold=0.746115 total=13986 INFO[11:48:59] Protein inference results decoy=2210 target=2337 INFO[11:48:59] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:49:00] Applying sequential FDR estimation ions=13903 peptides=11079 psms=52353 INFO[11:49:00] Converged to 0.08 % FDR with 52312 PSMs decoy=41 threshold=0.501669 total=52353 INFO[11:49:00] Converged to 0.25 % FDR with 11051 Peptides decoy=28 threshold=0.519337 total=11079 INFO[11:49:00] Converged to 0.21 % FDR with 13874 Ions decoy=29 threshold=0.504971 total=13903 INFO[11:49:01] Post processing identifications INFO[11:49:02] Assigning protein identifications to layers INFO[11:49:03] Processing protein inference INFO[11:49:04] Synchronizing PSMs and proteins INFO[11:49:04] Final report numbers after FDR filtering, and post-processing ions=13874 peptides=11051 proteins=1480 psms=52312 INFO[11:49:04] Saving INFO[11:49:05] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:49:05] Executing Filter v4.8.1 INFO[11:49:05] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:49:05] Processing peptide identification files INFO[11:49:05] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137\interact-S22049-Arjun-137.pep.xml INFO[11:49:09] 1+ Charge profile decoy=0 target=0 INFO[11:49:09] 2+ Charge profile decoy=271 target=35756 INFO[11:49:09] 3+ Charge profile decoy=44 target=8343 INFO[11:49:09] 4+ Charge profile decoy=1 target=161 INFO[11:49:09] 5+ Charge profile decoy=0 target=2 INFO[11:49:09] 6+ Charge profile decoy=0 target=0 INFO[11:49:09] Database search results ions=13137 peptides=10571 psms=44578 INFO[11:49:09] Converged to 0.71 % FDR with 44262 PSMs decoy=316 threshold=0.500217 total=44578 INFO[11:49:09] Converged to 0.99 % FDR with 10165 Peptides decoy=101 threshold=0.797235 total=10266 INFO[11:49:09] Converged to 1.00 % FDR with 12733 Ions decoy=127 threshold=0.76745 total=12860 INFO[11:49:11] Protein inference results decoy=2210 target=2337 INFO[11:49:11] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:49:12] Applying sequential FDR estimation ions=12837 peptides=10272 psms=44211 INFO[11:49:12] Converged to 0.11 % FDR with 44162 PSMs decoy=49 threshold=0.500386 total=44211 INFO[11:49:12] Converged to 0.30 % FDR with 10241 Peptides decoy=31 threshold=0.502595 total=10272 INFO[11:49:12] Converged to 0.25 % FDR with 12805 Ions decoy=32 threshold=0.502595 total=12837 INFO[11:49:13] Post processing identifications INFO[11:49:14] Assigning protein identifications to layers INFO[11:49:15] Processing protein inference INFO[11:49:16] Synchronizing PSMs and proteins INFO[11:49:16] Final report numbers after FDR filtering, and post-processing ions=12805 peptides=10241 proteins=1457 psms=44162 INFO[11:49:16] Saving INFO[11:49:16] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:49:17] Executing Filter v4.8.1 INFO[11:49:17] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:49:17] Processing peptide identification files INFO[11:49:17] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138\interact-S22049-Arjun-138.pep.xml INFO[11:49:22] 1+ Charge profile decoy=0 target=0 INFO[11:49:22] 2+ Charge profile decoy=271 target=40783 INFO[11:49:22] 3+ Charge profile decoy=57 target=12262 INFO[11:49:22] 4+ Charge profile decoy=3 target=574 INFO[11:49:22] 5+ Charge profile decoy=0 target=10 INFO[11:49:22] 6+ Charge profile decoy=0 target=0 INFO[11:49:22] Database search results ions=16316 peptides=12714 psms=53960 INFO[11:49:22] Converged to 0.62 % FDR with 53629 PSMs decoy=331 threshold=0.500092 total=53960 INFO[11:49:22] Converged to 0.99 % FDR with 12277 Peptides decoy=122 threshold=0.823606 total=12399 INFO[11:49:22] Converged to 1.00 % FDR with 15918 Ions decoy=159 threshold=0.758614 total=16077 INFO[11:49:24] Protein inference results decoy=2210 target=2337 INFO[11:49:24] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:49:25] Applying sequential FDR estimation ions=15996 peptides=12397 psms=53573 INFO[11:49:25] Converged to 0.08 % FDR with 53529 PSMs decoy=44 threshold=0.50115 total=53573 INFO[11:49:25] Converged to 0.24 % FDR with 12367 Peptides decoy=30 threshold=0.508572 total=12397 INFO[11:49:25] Converged to 0.19 % FDR with 15965 Ions decoy=31 threshold=0.508572 total=15996 INFO[11:49:26] Post processing identifications INFO[11:49:28] Assigning protein identifications to layers INFO[11:49:28] Processing protein inference INFO[11:49:29] Synchronizing PSMs and proteins INFO[11:49:30] Final report numbers after FDR filtering, and post-processing ions=15965 peptides=12367 proteins=1499 psms=53529 INFO[11:49:30] Saving INFO[11:49:30] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:49:31] Executing Filter v4.8.1 INFO[11:49:31] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:49:31] Processing peptide identification files INFO[11:49:31] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139\interact-S22049-Arjun-139.pep.xml INFO[11:49:35] 1+ Charge profile decoy=0 target=0 INFO[11:49:35] 2+ Charge profile decoy=293 target=37326 INFO[11:49:35] 3+ Charge profile decoy=39 target=8656 INFO[11:49:35] 4+ Charge profile decoy=1 target=203 INFO[11:49:35] 5+ Charge profile decoy=0 target=1 INFO[11:49:35] 6+ Charge profile decoy=0 target=0 INFO[11:49:35] Database search results ions=13869 peptides=10981 psms=46519 INFO[11:49:35] Converged to 0.72 % FDR with 46186 PSMs decoy=333 threshold=0.500176 total=46519 INFO[11:49:35] Converged to 1.00 % FDR with 10547 Peptides decoy=105 threshold=0.853512 total=10652 INFO[11:49:35] Converged to 1.00 % FDR with 13461 Ions decoy=134 threshold=0.784087 total=13595 INFO[11:49:37] Protein inference results decoy=2210 target=2337 INFO[11:49:37] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:49:39] Applying sequential FDR estimation ions=13558 peptides=10673 psms=46137 INFO[11:49:39] Converged to 0.10 % FDR with 46092 PSMs decoy=45 threshold=0.500176 total=46137 INFO[11:49:39] Converged to 0.30 % FDR with 10641 Peptides decoy=32 threshold=0.501363 total=10673 INFO[11:49:39] Converged to 0.24 % FDR with 13525 Ions decoy=33 threshold=0.501363 total=13558 INFO[11:49:39] Post processing identifications INFO[11:49:41] Assigning protein identifications to layers INFO[11:49:41] Processing protein inference INFO[11:49:42] Synchronizing PSMs and proteins INFO[11:49:43] Final report numbers after FDR filtering, and post-processing ions=13525 peptides=10641 proteins=1478 psms=46092 INFO[11:49:43] Saving INFO[11:49:43] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:49:44] Executing Filter v4.8.1 INFO[11:49:44] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:49:44] Processing peptide identification files INFO[11:49:44] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14\interact-S22049-Arjun-14.pep.xml INFO[11:49:49] 1+ Charge profile decoy=0 target=0 INFO[11:49:49] 2+ Charge profile decoy=312 target=41805 INFO[11:49:49] 3+ Charge profile decoy=56 target=10776 INFO[11:49:49] 4+ Charge profile decoy=1 target=264 INFO[11:49:49] 5+ Charge profile decoy=0 target=5 INFO[11:49:49] 6+ Charge profile decoy=0 target=0 INFO[11:49:49] Database search results ions=13708 peptides=11151 psms=53219 INFO[11:49:49] Converged to 0.70 % FDR with 52850 PSMs decoy=369 threshold=0.500489 total=53219 INFO[11:49:49] Converged to 1.00 % FDR with 10652 Peptides decoy=106 threshold=0.883491 total=10758 INFO[11:49:49] Converged to 1.00 % FDR with 13228 Ions decoy=132 threshold=0.825352 total=13360 INFO[11:49:51] Protein inference results decoy=2210 target=2337 INFO[11:49:51] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:49:52] Applying sequential FDR estimation ions=13384 peptides=10828 psms=52832 INFO[11:49:52] Converged to 0.09 % FDR with 52783 PSMs decoy=49 threshold=0.500489 total=52832 INFO[11:49:52] Converged to 0.31 % FDR with 10795 Peptides decoy=33 threshold=0.500489 total=10828 INFO[11:49:52] Converged to 0.25 % FDR with 13350 Ions decoy=34 threshold=0.500489 total=13384 INFO[11:49:53] Post processing identifications INFO[11:49:55] Assigning protein identifications to layers INFO[11:49:55] Processing protein inference INFO[11:49:56] Synchronizing PSMs and proteins INFO[11:49:57] Final report numbers after FDR filtering, and post-processing ions=13350 peptides=10795 proteins=1512 psms=52783 INFO[11:49:57] Saving INFO[11:49:57] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:49:58] Executing Filter v4.8.1 INFO[11:49:58] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:49:58] Processing peptide identification files INFO[11:49:58] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140\interact-S22049-Arjun-140.pep.xml INFO[11:50:03] 1+ Charge profile decoy=0 target=0 INFO[11:50:03] 2+ Charge profile decoy=306 target=40600 INFO[11:50:03] 3+ Charge profile decoy=61 target=12118 INFO[11:50:03] 4+ Charge profile decoy=4 target=565 INFO[11:50:03] 5+ Charge profile decoy=0 target=14 INFO[11:50:03] 6+ Charge profile decoy=0 target=0 INFO[11:50:03] Database search results ions=15844 peptides=12444 psms=53668 INFO[11:50:03] Converged to 0.70 % FDR with 53297 PSMs decoy=371 threshold=0.500547 total=53668 INFO[11:50:03] Converged to 0.99 % FDR with 11962 Peptides decoy=119 threshold=0.760581 total=12081 INFO[11:50:03] Converged to 1.00 % FDR with 15362 Ions decoy=153 threshold=0.710303 total=15515 INFO[11:50:05] Protein inference results decoy=2210 target=2337 INFO[11:50:05] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:50:07] Applying sequential FDR estimation ions=15486 peptides=12088 psms=53250 INFO[11:50:07] Converged to 0.08 % FDR with 53206 PSMs decoy=44 threshold=0.500645 total=53250 INFO[11:50:07] Converged to 0.29 % FDR with 12053 Peptides decoy=35 threshold=0.500645 total=12088 INFO[11:50:07] Converged to 0.23 % FDR with 15450 Ions decoy=36 threshold=0.500645 total=15486 INFO[11:50:07] Post processing identifications INFO[11:50:09] Assigning protein identifications to layers INFO[11:50:09] Processing protein inference INFO[11:50:11] Synchronizing PSMs and proteins INFO[11:50:11] Final report numbers after FDR filtering, and post-processing ions=15450 peptides=12053 proteins=1463 psms=53206 INFO[11:50:11] Saving INFO[11:50:11] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:50:12] Executing Filter v4.8.1 INFO[11:50:12] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:50:12] Processing peptide identification files INFO[11:50:12] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141\interact-S22049-Arjun-141.pep.xml INFO[11:50:18] 1+ Charge profile decoy=0 target=0 INFO[11:50:18] 2+ Charge profile decoy=280 target=41689 INFO[11:50:18] 3+ Charge profile decoy=70 target=13363 INFO[11:50:18] 4+ Charge profile decoy=4 target=796 INFO[11:50:18] 5+ Charge profile decoy=1 target=34 INFO[11:50:18] 6+ Charge profile decoy=0 target=0 INFO[11:50:18] Database search results ions=16696 peptides=13079 psms=56237 INFO[11:50:18] Converged to 0.64 % FDR with 55882 PSMs decoy=355 threshold=0.500064 total=56237 INFO[11:50:18] Converged to 1.00 % FDR with 12624 Peptides decoy=126 threshold=0.738831 total=12750 INFO[11:50:18] Converged to 1.00 % FDR with 16243 Ions decoy=162 threshold=0.681255 total=16405 INFO[11:50:19] Protein inference results decoy=2210 target=2337 INFO[11:50:20] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:50:21] Applying sequential FDR estimation ions=16367 peptides=12750 psms=55864 INFO[11:50:21] Converged to 0.10 % FDR with 55810 PSMs decoy=54 threshold=0.500064 total=55864 INFO[11:50:21] Converged to 0.33 % FDR with 12708 Peptides decoy=42 threshold=0.502536 total=12750 INFO[11:50:21] Converged to 0.26 % FDR with 16325 Ions decoy=42 threshold=0.502536 total=16367 INFO[11:50:21] Post processing identifications INFO[11:50:24] Assigning protein identifications to layers INFO[11:50:24] Processing protein inference INFO[11:50:25] Synchronizing PSMs and proteins INFO[11:50:25] Final report numbers after FDR filtering, and post-processing ions=16325 peptides=12708 proteins=1477 psms=55810 INFO[11:50:25] Saving INFO[11:50:26] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:50:27] Executing Filter v4.8.1 INFO[11:50:27] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:50:27] Processing peptide identification files INFO[11:50:27] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142\interact-S22049-Arjun-142.pep.xml INFO[11:50:32] 1+ Charge profile decoy=0 target=0 INFO[11:50:32] 2+ Charge profile decoy=291 target=38246 INFO[11:50:32] 3+ Charge profile decoy=61 target=11743 INFO[11:50:32] 4+ Charge profile decoy=4 target=640 INFO[11:50:32] 5+ Charge profile decoy=1 target=15 INFO[11:50:32] 6+ Charge profile decoy=0 target=0 INFO[11:50:32] Database search results ions=16212 peptides=12495 psms=51001 INFO[11:50:32] Converged to 0.70 % FDR with 50644 PSMs decoy=357 threshold=0.500133 total=51001 INFO[11:50:32] Converged to 1.00 % FDR with 12022 Peptides decoy=120 threshold=0.79548 total=12142 INFO[11:50:32] Converged to 1.00 % FDR with 15759 Ions decoy=157 threshold=0.775734 total=15916 INFO[11:50:34] Protein inference results decoy=2210 target=2337 INFO[11:50:34] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:50:35] Applying sequential FDR estimation ions=15881 peptides=12167 psms=50612 INFO[11:50:35] Converged to 0.08 % FDR with 50571 PSMs decoy=41 threshold=0.501572 total=50612 INFO[11:50:35] Converged to 0.26 % FDR with 12135 Peptides decoy=32 threshold=0.502594 total=12167 INFO[11:50:35] Converged to 0.21 % FDR with 15848 Ions decoy=33 threshold=0.502594 total=15881 INFO[11:50:36] Post processing identifications INFO[11:50:38] Assigning protein identifications to layers INFO[11:50:38] Processing protein inference INFO[11:50:39] Synchronizing PSMs and proteins INFO[11:50:39] Final report numbers after FDR filtering, and post-processing ions=15848 peptides=12135 proteins=1448 psms=50571 INFO[11:50:39] Saving INFO[11:50:40] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:50:41] Executing Filter v4.8.1 INFO[11:50:41] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:50:41] Processing peptide identification files INFO[11:50:41] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143\interact-S22049-Arjun-143.pep.xml INFO[11:50:45] 1+ Charge profile decoy=0 target=0 INFO[11:50:45] 2+ Charge profile decoy=234 target=33569 INFO[11:50:45] 3+ Charge profile decoy=42 target=10091 INFO[11:50:45] 4+ Charge profile decoy=4 target=426 INFO[11:50:45] 5+ Charge profile decoy=0 target=5 INFO[11:50:45] 6+ Charge profile decoy=0 target=0 INFO[11:50:45] Database search results ions=14881 peptides=11361 psms=44371 INFO[11:50:45] Converged to 0.64 % FDR with 44091 PSMs decoy=280 threshold=0.50057 total=44371 INFO[11:50:45] Converged to 1.00 % FDR with 11011 Peptides decoy=110 threshold=0.759249 total=11121 INFO[11:50:45] Converged to 1.00 % FDR with 14557 Ions decoy=145 threshold=0.660332 total=14702 INFO[11:50:47] Protein inference results decoy=2210 target=2337 INFO[11:50:47] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:50:48] Applying sequential FDR estimation ions=14614 peptides=11095 psms=44068 INFO[11:50:48] Converged to 0.09 % FDR with 44029 PSMs decoy=39 threshold=0.50126 total=44068 INFO[11:50:48] Converged to 0.27 % FDR with 11065 Peptides decoy=30 threshold=0.503239 total=11095 INFO[11:50:48] Converged to 0.21 % FDR with 14583 Ions decoy=31 threshold=0.503239 total=14614 INFO[11:50:49] Post processing identifications INFO[11:50:50] Assigning protein identifications to layers INFO[11:50:50] Processing protein inference INFO[11:50:52] Synchronizing PSMs and proteins INFO[11:50:52] Final report numbers after FDR filtering, and post-processing ions=14583 peptides=11065 proteins=1424 psms=44029 INFO[11:50:52] Saving INFO[11:50:53] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:50:53] Executing Filter v4.8.1 INFO[11:50:54] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:50:54] Processing peptide identification files INFO[11:50:54] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144\interact-S22049-Arjun-144.pep.xml INFO[11:50:58] 1+ Charge profile decoy=0 target=0 INFO[11:50:58] 2+ Charge profile decoy=270 target=35178 INFO[11:50:58] 3+ Charge profile decoy=31 target=6788 INFO[11:50:58] 4+ Charge profile decoy=2 target=118 INFO[11:50:58] 5+ Charge profile decoy=0 target=4 INFO[11:50:58] 6+ Charge profile decoy=0 target=0 INFO[11:50:58] Database search results ions=10418 peptides=8504 psms=42391 INFO[11:50:58] Converged to 0.72 % FDR with 42088 PSMs decoy=303 threshold=0.500753 total=42391 INFO[11:50:58] Converged to 0.99 % FDR with 8086 Peptides decoy=80 threshold=0.816333 total=8166 INFO[11:50:58] Converged to 1.00 % FDR with 10003 Ions decoy=100 threshold=0.769975 total=10103 INFO[11:50:59] Protein inference results decoy=2210 target=2337 INFO[11:51:00] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:51:01] Applying sequential FDR estimation ions=10145 peptides=8233 psms=42073 INFO[11:51:01] Converged to 0.10 % FDR with 42031 PSMs decoy=42 threshold=0.502168 total=42073 INFO[11:51:01] Converged to 0.38 % FDR with 8202 Peptides decoy=31 threshold=0.502168 total=8233 INFO[11:51:01] Converged to 0.32 % FDR with 10113 Ions decoy=32 threshold=0.502168 total=10145 INFO[11:51:01] Post processing identifications INFO[11:51:03] Assigning protein identifications to layers INFO[11:51:03] Processing protein inference INFO[11:51:04] Synchronizing PSMs and proteins INFO[11:51:04] Final report numbers after FDR filtering, and post-processing ions=10113 peptides=8202 proteins=1388 psms=42031 INFO[11:51:04] Saving INFO[11:51:05] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:51:05] Executing Filter v4.8.1 INFO[11:51:06] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:51:06] Processing peptide identification files INFO[11:51:06] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15\interact-S22049-Arjun-15.pep.xml INFO[11:51:11] 1+ Charge profile decoy=0 target=0 INFO[11:51:11] 2+ Charge profile decoy=307 target=44057 INFO[11:51:11] 3+ Charge profile decoy=93 target=17318 INFO[11:51:11] 4+ Charge profile decoy=4 target=1346 INFO[11:51:11] 5+ Charge profile decoy=1 target=121 INFO[11:51:11] 6+ Charge profile decoy=0 target=1 INFO[11:51:11] Database search results ions=18662 peptides=14219 psms=63248 INFO[11:51:11] Converged to 0.64 % FDR with 62843 PSMs decoy=405 threshold=0.500391 total=63248 INFO[11:51:11] Converged to 1.00 % FDR with 13657 Peptides decoy=136 threshold=0.829823 total=13793 INFO[11:51:11] Converged to 1.00 % FDR with 18140 Ions decoy=181 threshold=0.735458 total=18321 INFO[11:51:13] Protein inference results decoy=2210 target=2337 INFO[11:51:13] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:51:15] Applying sequential FDR estimation ions=18286 peptides=13844 psms=62810 INFO[11:51:15] Converged to 0.10 % FDR with 62750 PSMs decoy=60 threshold=0.500391 total=62810 INFO[11:51:15] Converged to 0.33 % FDR with 13799 Peptides decoy=45 threshold=0.503873 total=13844 INFO[11:51:15] Converged to 0.26 % FDR with 18239 Ions decoy=47 threshold=0.503873 total=18286 INFO[11:51:15] Post processing identifications INFO[11:51:17] Assigning protein identifications to layers INFO[11:51:17] Processing protein inference INFO[11:51:19] Synchronizing PSMs and proteins INFO[11:51:19] Final report numbers after FDR filtering, and post-processing ions=18239 peptides=13799 proteins=1514 psms=62750 INFO[11:51:19] Saving INFO[11:51:19] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:51:20] Executing Filter v4.8.1 INFO[11:51:20] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:51:20] Processing peptide identification files INFO[11:51:20] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16\interact-S22049-Arjun-16.pep.xml INFO[11:51:26] 1+ Charge profile decoy=0 target=0 INFO[11:51:26] 2+ Charge profile decoy=310 target=43785 INFO[11:51:26] 3+ Charge profile decoy=78 target=16612 INFO[11:51:26] 4+ Charge profile decoy=6 target=1239 INFO[11:51:26] 5+ Charge profile decoy=1 target=77 INFO[11:51:26] 6+ Charge profile decoy=0 target=0 INFO[11:51:26] Database search results ions=18758 peptides=14107 psms=62108 INFO[11:51:26] Converged to 0.64 % FDR with 61713 PSMs decoy=395 threshold=0.500161 total=62108 INFO[11:51:26] Converged to 0.99 % FDR with 13588 Peptides decoy=135 threshold=0.786372 total=13723 INFO[11:51:26] Converged to 1.00 % FDR with 18269 Ions decoy=182 threshold=0.704824 total=18451 INFO[11:51:28] Protein inference results decoy=2210 target=2337 INFO[11:51:28] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:51:29] Applying sequential FDR estimation ions=18388 peptides=13739 psms=61686 INFO[11:51:29] Converged to 0.07 % FDR with 61641 PSMs decoy=45 threshold=0.500161 total=61686 INFO[11:51:29] Converged to 0.27 % FDR with 13702 Peptides decoy=37 threshold=0.503067 total=13739 INFO[11:51:29] Converged to 0.20 % FDR with 18351 Ions decoy=37 threshold=0.502644 total=18388 INFO[11:51:30] Post processing identifications INFO[11:51:32] Assigning protein identifications to layers INFO[11:51:32] Processing protein inference INFO[11:51:33] Synchronizing PSMs and proteins INFO[11:51:34] Final report numbers after FDR filtering, and post-processing ions=18351 peptides=13702 proteins=1516 psms=61641 INFO[11:51:34] Saving INFO[11:51:34] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:51:35] Executing Filter v4.8.1 INFO[11:51:35] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:51:35] Processing peptide identification files INFO[11:51:35] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17\interact-S22049-Arjun-17.pep.xml INFO[11:51:40] 1+ Charge profile decoy=0 target=0 INFO[11:51:40] 2+ Charge profile decoy=347 target=46769 INFO[11:51:40] 3+ Charge profile decoy=27 target=5813 INFO[11:51:40] 4+ Charge profile decoy=1 target=42 INFO[11:51:40] 5+ Charge profile decoy=0 target=1 INFO[11:51:40] 6+ Charge profile decoy=0 target=0 INFO[11:51:40] Database search results ions=10331 peptides=8540 psms=53000 INFO[11:51:40] Converged to 0.71 % FDR with 52625 PSMs decoy=375 threshold=0.500041 total=53000 INFO[11:51:40] Converged to 0.99 % FDR with 8096 Peptides decoy=80 threshold=0.869474 total=8176 INFO[11:51:40] Converged to 0.99 % FDR with 9875 Ions decoy=98 threshold=0.854002 total=9973 INFO[11:51:42] Protein inference results decoy=2210 target=2337 INFO[11:51:42] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:51:43] Applying sequential FDR estimation ions=10035 peptides=8245 psms=52599 INFO[11:51:43] Converged to 0.10 % FDR with 52548 PSMs decoy=51 threshold=0.500041 total=52599 INFO[11:51:43] Converged to 0.38 % FDR with 8214 Peptides decoy=31 threshold=0.500811 total=8245 INFO[11:51:43] Converged to 0.32 % FDR with 10003 Ions decoy=32 threshold=0.500041 total=10035 INFO[11:51:43] Post processing identifications INFO[11:51:45] Assigning protein identifications to layers INFO[11:51:45] Processing protein inference INFO[11:51:46] Synchronizing PSMs and proteins INFO[11:51:47] Final report numbers after FDR filtering, and post-processing ions=10003 peptides=8214 proteins=1441 psms=52548 INFO[11:51:47] Saving INFO[11:51:47] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:51:48] Executing Filter v4.8.1 INFO[11:51:48] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:51:48] Processing peptide identification files INFO[11:51:48] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18\interact-S22049-Arjun-18.pep.xml INFO[11:51:53] 1+ Charge profile decoy=0 target=0 INFO[11:51:53] 2+ Charge profile decoy=373 target=44012 INFO[11:51:53] 3+ Charge profile decoy=58 target=11370 INFO[11:51:53] 4+ Charge profile decoy=2 target=276 INFO[11:51:53] 5+ Charge profile decoy=0 target=4 INFO[11:51:53] 6+ Charge profile decoy=0 target=0 INFO[11:51:53] Database search results ions=15854 peptides=12387 psms=56095 INFO[11:51:53] Converged to 0.78 % FDR with 55662 PSMs decoy=433 threshold=0.500016 total=56095 INFO[11:51:53] Converged to 1.00 % FDR with 11836 Peptides decoy=118 threshold=0.84035 total=11954 INFO[11:51:53] Converged to 1.00 % FDR with 15305 Ions decoy=153 threshold=0.789361 total=15458 INFO[11:51:55] Protein inference results decoy=2210 target=2337 INFO[11:51:55] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:51:56] Applying sequential FDR estimation ions=15441 peptides=11978 psms=55587 INFO[11:51:56] Converged to 0.07 % FDR with 55548 PSMs decoy=39 threshold=0.50038 total=55587 INFO[11:51:56] Converged to 0.26 % FDR with 11947 Peptides decoy=31 threshold=0.501348 total=11978 INFO[11:51:56] Converged to 0.21 % FDR with 15409 Ions decoy=32 threshold=0.501348 total=15441 INFO[11:51:57] Post processing identifications INFO[11:51:59] Assigning protein identifications to layers INFO[11:51:59] Processing protein inference INFO[11:52:00] Synchronizing PSMs and proteins INFO[11:52:00] Final report numbers after FDR filtering, and post-processing ions=15409 peptides=11947 proteins=1528 psms=55548 INFO[11:52:00] Saving INFO[11:52:01] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:52:02] Executing Filter v4.8.1 INFO[11:52:02] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:52:02] Processing peptide identification files INFO[11:52:02] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19\interact-S22049-Arjun-19.pep.xml INFO[11:52:07] 1+ Charge profile decoy=0 target=0 INFO[11:52:07] 2+ Charge profile decoy=314 target=45747 INFO[11:52:07] 3+ Charge profile decoy=80 target=16973 INFO[11:52:07] 4+ Charge profile decoy=6 target=1108 INFO[11:52:07] 5+ Charge profile decoy=2 target=64 INFO[11:52:07] 6+ Charge profile decoy=0 target=0 INFO[11:52:07] Database search results ions=18162 peptides=13813 psms=64294 INFO[11:52:07] Converged to 0.63 % FDR with 63892 PSMs decoy=402 threshold=0.500223 total=64294 INFO[11:52:08] Converged to 1.00 % FDR with 13307 Peptides decoy=133 threshold=0.774636 total=13440 INFO[11:52:08] Converged to 1.00 % FDR with 17681 Ions decoy=176 threshold=0.701144 total=17857 INFO[11:52:09] Protein inference results decoy=2210 target=2337 INFO[11:52:09] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:52:11] Applying sequential FDR estimation ions=17784 peptides=13436 psms=63848 INFO[11:52:11] Converged to 0.09 % FDR with 63790 PSMs decoy=58 threshold=0.500223 total=63848 INFO[11:52:11] Converged to 0.34 % FDR with 13391 Peptides decoy=45 threshold=0.500758 total=13436 INFO[11:52:11] Converged to 0.26 % FDR with 17737 Ions decoy=47 threshold=0.500758 total=17784 INFO[11:52:11] Post processing identifications INFO[11:52:13] Assigning protein identifications to layers INFO[11:52:14] Processing protein inference INFO[11:52:15] Synchronizing PSMs and proteins INFO[11:52:15] Final report numbers after FDR filtering, and post-processing ions=17737 peptides=13391 proteins=1493 psms=63790 INFO[11:52:15] Saving INFO[11:52:16] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:52:16] Executing Filter v4.8.1 INFO[11:52:17] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:52:17] Processing peptide identification files INFO[11:52:17] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2\interact-S22049-Arjun-2.pep.xml INFO[11:52:22] 1+ Charge profile decoy=0 target=0 INFO[11:52:22] 2+ Charge profile decoy=277 target=45097 INFO[11:52:22] 3+ Charge profile decoy=80 target=17822 INFO[11:52:22] 4+ Charge profile decoy=5 target=1168 INFO[11:52:22] 5+ Charge profile decoy=2 target=79 INFO[11:52:22] 6+ Charge profile decoy=0 target=0 INFO[11:52:23] Database search results ions=17569 peptides=13369 psms=64530 INFO[11:52:23] Converged to 0.57 % FDR with 64166 PSMs decoy=364 threshold=0.500491 total=64530 INFO[11:52:23] Converged to 1.00 % FDR with 12916 Peptides decoy=129 threshold=0.796381 total=13045 INFO[11:52:23] Converged to 1.00 % FDR with 17148 Ions decoy=171 threshold=0.720961 total=17319 INFO[11:52:24] Protein inference results decoy=2210 target=2337 INFO[11:52:25] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:52:26] Applying sequential FDR estimation ions=17230 peptides=13030 psms=64125 INFO[11:52:26] Converged to 0.07 % FDR with 64080 PSMs decoy=45 threshold=0.500491 total=64125 INFO[11:52:26] Converged to 0.27 % FDR with 12995 Peptides decoy=35 threshold=0.50736 total=13030 INFO[11:52:26] Converged to 0.21 % FDR with 17194 Ions decoy=36 threshold=0.50736 total=17230 INFO[11:52:27] Post processing identifications INFO[11:52:29] Assigning protein identifications to layers INFO[11:52:29] Processing protein inference INFO[11:52:30] Synchronizing PSMs and proteins INFO[11:52:31] Final report numbers after FDR filtering, and post-processing ions=17194 peptides=12995 proteins=1472 psms=64080 INFO[11:52:31] Saving INFO[11:52:31] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:52:32] Executing Filter v4.8.1 INFO[11:52:32] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:52:32] Processing peptide identification files INFO[11:52:32] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20\interact-S22049-Arjun-20.pep.xml INFO[11:52:38] 1+ Charge profile decoy=0 target=0 INFO[11:52:38] 2+ Charge profile decoy=324 target=48411 INFO[11:52:38] 3+ Charge profile decoy=81 target=17398 INFO[11:52:38] 4+ Charge profile decoy=3 target=1054 INFO[11:52:38] 5+ Charge profile decoy=2 target=71 INFO[11:52:38] 6+ Charge profile decoy=0 target=0 INFO[11:52:38] Database search results ions=18501 peptides=14278 psms=67344 INFO[11:52:38] Converged to 0.61 % FDR with 66934 PSMs decoy=410 threshold=0.500341 total=67344 INFO[11:52:38] Converged to 0.99 % FDR with 13770 Peptides decoy=137 threshold=0.80349 total=13907 INFO[11:52:38] Converged to 1.00 % FDR with 18022 Ions decoy=180 threshold=0.713773 total=18202 INFO[11:52:40] Protein inference results decoy=2210 target=2337 INFO[11:52:40] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:52:42] Applying sequential FDR estimation ions=18142 peptides=13919 psms=66907 INFO[11:52:42] Converged to 0.07 % FDR with 66858 PSMs decoy=49 threshold=0.500341 total=66907 INFO[11:52:42] Converged to 0.27 % FDR with 13881 Peptides decoy=38 threshold=0.500341 total=13919 INFO[11:52:42] Converged to 0.22 % FDR with 18103 Ions decoy=39 threshold=0.500341 total=18142 INFO[11:52:42] Post processing identifications INFO[11:52:45] Assigning protein identifications to layers INFO[11:52:45] Processing protein inference INFO[11:52:46] Synchronizing PSMs and proteins INFO[11:52:46] Final report numbers after FDR filtering, and post-processing ions=18103 peptides=13881 proteins=1520 psms=66858 INFO[11:52:46] Saving INFO[11:52:47] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:52:47] Executing Filter v4.8.1 INFO[11:52:48] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:52:48] Processing peptide identification files INFO[11:52:48] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21\interact-S22049-Arjun-21.pep.xml INFO[11:52:53] 1+ Charge profile decoy=0 target=0 INFO[11:52:53] 2+ Charge profile decoy=324 target=46340 INFO[11:52:53] 3+ Charge profile decoy=49 target=9856 INFO[11:52:53] 4+ Charge profile decoy=3 target=143 INFO[11:52:53] 5+ Charge profile decoy=0 target=5 INFO[11:52:53] 6+ Charge profile decoy=0 target=0 INFO[11:52:53] Database search results ions=11782 peptides=9639 psms=56720 INFO[11:52:53] Converged to 0.67 % FDR with 56344 PSMs decoy=376 threshold=0.500291 total=56720 INFO[11:52:53] Converged to 0.99 % FDR with 9171 Peptides decoy=91 threshold=0.861593 total=9262 INFO[11:52:53] Converged to 0.99 % FDR with 11296 Ions decoy=112 threshold=0.843728 total=11408 INFO[11:52:54] Protein inference results decoy=2210 target=2337 INFO[11:52:55] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:52:56] Applying sequential FDR estimation ions=11452 peptides=9310 psms=56310 INFO[11:52:56] Converged to 0.09 % FDR with 56262 PSMs decoy=48 threshold=0.500291 total=56310 INFO[11:52:56] Converged to 0.36 % FDR with 9277 Peptides decoy=33 threshold=0.500291 total=9310 INFO[11:52:56] Converged to 0.30 % FDR with 11418 Ions decoy=34 threshold=0.500291 total=11452 INFO[11:52:56] Post processing identifications INFO[11:52:58] Assigning protein identifications to layers INFO[11:52:58] Processing protein inference INFO[11:52:59] Synchronizing PSMs and proteins INFO[11:53:00] Final report numbers after FDR filtering, and post-processing ions=11418 peptides=9277 proteins=1462 psms=56262 INFO[11:53:00] Saving INFO[11:53:00] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:53:01] Executing Filter v4.8.1 INFO[11:53:01] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:53:01] Processing peptide identification files INFO[11:53:01] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22\interact-S22049-Arjun-22.pep.xml INFO[11:53:06] 1+ Charge profile decoy=0 target=0 INFO[11:53:06] 2+ Charge profile decoy=314 target=43201 INFO[11:53:06] 3+ Charge profile decoy=68 target=12308 INFO[11:53:06] 4+ Charge profile decoy=2 target=346 INFO[11:53:06] 5+ Charge profile decoy=0 target=5 INFO[11:53:06] 6+ Charge profile decoy=0 target=0 INFO[11:53:06] Database search results ions=14279 peptides=11281 psms=56244 INFO[11:53:06] Converged to 0.69 % FDR with 55860 PSMs decoy=384 threshold=0.50045 total=56244 INFO[11:53:06] Converged to 0.99 % FDR with 10793 Peptides decoy=107 threshold=0.84558 total=10900 INFO[11:53:06] Converged to 1.00 % FDR with 13804 Ions decoy=138 threshold=0.813006 total=13942 INFO[11:53:08] Protein inference results decoy=2210 target=2337 INFO[11:53:08] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:53:09] Applying sequential FDR estimation ions=13934 peptides=10937 psms=55838 INFO[11:53:09] Converged to 0.11 % FDR with 55777 PSMs decoy=61 threshold=0.50071 total=55838 INFO[11:53:09] Converged to 0.36 % FDR with 10898 Peptides decoy=39 threshold=0.50071 total=10937 INFO[11:53:09] Converged to 0.30 % FDR with 13893 Ions decoy=41 threshold=0.50071 total=13934 INFO[11:53:10] Post processing identifications INFO[11:53:12] Assigning protein identifications to layers INFO[11:53:12] Processing protein inference INFO[11:53:13] Synchronizing PSMs and proteins INFO[11:53:13] Final report numbers after FDR filtering, and post-processing ions=13893 peptides=10898 proteins=1502 psms=55777 INFO[11:53:13] Saving INFO[11:53:14] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:53:14] Executing Filter v4.8.1 INFO[11:53:14] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:53:14] Processing peptide identification files INFO[11:53:14] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23\interact-S22049-Arjun-23.pep.xml INFO[11:53:20] 1+ Charge profile decoy=0 target=0 INFO[11:53:20] 2+ Charge profile decoy=306 target=46883 INFO[11:53:20] 3+ Charge profile decoy=85 target=17356 INFO[11:53:20] 4+ Charge profile decoy=6 target=1081 INFO[11:53:20] 5+ Charge profile decoy=2 target=58 INFO[11:53:20] 6+ Charge profile decoy=0 target=0 INFO[11:53:20] Database search results ions=17997 peptides=13681 psms=65777 INFO[11:53:21] Converged to 0.61 % FDR with 65378 PSMs decoy=399 threshold=0.500049 total=65777 INFO[11:53:21] Converged to 1.00 % FDR with 13123 Peptides decoy=131 threshold=0.79288 total=13254 INFO[11:53:21] Converged to 1.00 % FDR with 17468 Ions decoy=174 threshold=0.752514 total=17642 INFO[11:53:22] Protein inference results decoy=2210 target=2337 INFO[11:53:22] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:53:24] Applying sequential FDR estimation ions=17615 peptides=13301 psms=65330 INFO[11:53:24] Converged to 0.08 % FDR with 65276 PSMs decoy=54 threshold=0.500049 total=65330 INFO[11:53:24] Converged to 0.32 % FDR with 13258 Peptides decoy=43 threshold=0.500632 total=13301 INFO[11:53:24] Converged to 0.25 % FDR with 17571 Ions decoy=44 threshold=0.500632 total=17615 INFO[11:53:24] Post processing identifications INFO[11:53:27] Assigning protein identifications to layers INFO[11:53:27] Processing protein inference INFO[11:53:28] Synchronizing PSMs and proteins INFO[11:53:28] Final report numbers after FDR filtering, and post-processing ions=17571 peptides=13258 proteins=1473 psms=65276 INFO[11:53:28] Saving INFO[11:53:29] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:53:29] Executing Filter v4.8.1 INFO[11:53:30] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:53:30] Processing peptide identification files INFO[11:53:30] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24\interact-S22049-Arjun-24.pep.xml INFO[11:53:35] 1+ Charge profile decoy=0 target=0 INFO[11:53:36] 2+ Charge profile decoy=332 target=47556 INFO[11:53:36] 3+ Charge profile decoy=83 target=16689 INFO[11:53:36] 4+ Charge profile decoy=8 target=955 INFO[11:53:36] 5+ Charge profile decoy=0 target=53 INFO[11:53:36] 6+ Charge profile decoy=0 target=0 INFO[11:53:36] Database search results ions=18056 peptides=13894 psms=65676 INFO[11:53:36] Converged to 0.65 % FDR with 65253 PSMs decoy=423 threshold=0.500278 total=65676 INFO[11:53:36] Converged to 1.00 % FDR with 13353 Peptides decoy=133 threshold=0.819366 total=13486 INFO[11:53:36] Converged to 1.00 % FDR with 17532 Ions decoy=175 threshold=0.746879 total=17707 INFO[11:53:37] Protein inference results decoy=2210 target=2337 INFO[11:53:38] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:53:39] Applying sequential FDR estimation ions=17673 peptides=13512 psms=65210 INFO[11:53:39] Converged to 0.08 % FDR with 65158 PSMs decoy=52 threshold=0.500722 total=65210 INFO[11:53:39] Converged to 0.30 % FDR with 13471 Peptides decoy=41 threshold=0.500722 total=13512 INFO[11:53:39] Converged to 0.24 % FDR with 17631 Ions decoy=42 threshold=0.500722 total=17673 INFO[11:53:39] Post processing identifications INFO[11:53:42] Assigning protein identifications to layers INFO[11:53:42] Processing protein inference INFO[11:53:43] Synchronizing PSMs and proteins INFO[11:53:44] Final report numbers after FDR filtering, and post-processing ions=17631 peptides=13471 proteins=1511 psms=65158 INFO[11:53:44] Saving INFO[11:53:44] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:53:45] Executing Filter v4.8.1 INFO[11:53:45] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:53:45] Processing peptide identification files INFO[11:53:45] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25\interact-S22049-Arjun-25.pep.xml INFO[11:53:50] 1+ Charge profile decoy=0 target=0 INFO[11:53:50] 2+ Charge profile decoy=247 target=40953 INFO[11:53:50] 3+ Charge profile decoy=57 target=12581 INFO[11:53:50] 4+ Charge profile decoy=1 target=429 INFO[11:53:50] 5+ Charge profile decoy=0 target=8 INFO[11:53:50] 6+ Charge profile decoy=0 target=0 INFO[11:53:50] Database search results ions=15417 peptides=12068 psms=54276 INFO[11:53:50] Converged to 0.57 % FDR with 53971 PSMs decoy=305 threshold=0.500261 total=54276 INFO[11:53:50] Converged to 1.00 % FDR with 11700 Peptides decoy=117 threshold=0.811218 total=11817 INFO[11:53:50] Converged to 1.00 % FDR with 15069 Ions decoy=150 threshold=0.755071 total=15219 INFO[11:53:51] Protein inference results decoy=2210 target=2337 INFO[11:53:52] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:53:53] Applying sequential FDR estimation ions=15139 peptides=11792 psms=53944 INFO[11:53:53] Converged to 0.09 % FDR with 53896 PSMs decoy=48 threshold=0.502349 total=53944 INFO[11:53:53] Converged to 0.31 % FDR with 11756 Peptides decoy=36 threshold=0.503131 total=11792 INFO[11:53:53] Converged to 0.25 % FDR with 15102 Ions decoy=37 threshold=0.503131 total=15139 INFO[11:53:53] Post processing identifications INFO[11:53:55] Assigning protein identifications to layers INFO[11:53:55] Processing protein inference INFO[11:53:56] Synchronizing PSMs and proteins INFO[11:53:57] Final report numbers after FDR filtering, and post-processing ions=15102 peptides=11756 proteins=1506 psms=53896 INFO[11:53:57] Saving INFO[11:53:57] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:53:58] Executing Filter v4.8.1 INFO[11:53:58] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:53:58] Processing peptide identification files INFO[11:53:58] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26\interact-S22049-Arjun-26.pep.xml INFO[11:54:03] 1+ Charge profile decoy=0 target=0 INFO[11:54:03] 2+ Charge profile decoy=402 target=47324 INFO[11:54:03] 3+ Charge profile decoy=45 target=6959 INFO[11:54:03] 4+ Charge profile decoy=1 target=79 INFO[11:54:03] 5+ Charge profile decoy=0 target=3 INFO[11:54:03] 6+ Charge profile decoy=0 target=0 INFO[11:54:03] Database search results ions=10631 peptides=8971 psms=54813 INFO[11:54:03] Converged to 0.82 % FDR with 54365 PSMs decoy=448 threshold=0.500874 total=54813 INFO[11:54:03] Converged to 0.99 % FDR with 8365 Peptides decoy=83 threshold=0.883962 total=8448 INFO[11:54:03] Converged to 1.00 % FDR with 10014 Ions decoy=100 threshold=0.858375 total=10114 INFO[11:54:05] Protein inference results decoy=2210 target=2337 INFO[11:54:05] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:54:06] Applying sequential FDR estimation ions=10236 peptides=8577 psms=54330 INFO[11:54:06] Converged to 0.11 % FDR with 54269 PSMs decoy=61 threshold=0.501096 total=54330 INFO[11:54:06] Converged to 0.42 % FDR with 8541 Peptides decoy=36 threshold=0.501583 total=8577 INFO[11:54:06] Converged to 0.36 % FDR with 10199 Ions decoy=37 threshold=0.501583 total=10236 INFO[11:54:06] Post processing identifications INFO[11:54:08] Assigning protein identifications to layers INFO[11:54:08] Processing protein inference INFO[11:54:09] Synchronizing PSMs and proteins INFO[11:54:10] Final report numbers after FDR filtering, and post-processing ions=10199 peptides=8541 proteins=1447 psms=54269 INFO[11:54:10] Saving INFO[11:54:10] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:54:11] Executing Filter v4.8.1 INFO[11:54:11] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:54:11] Processing peptide identification files INFO[11:54:11] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27\interact-S22049-Arjun-27.pep.xml INFO[11:54:17] 1+ Charge profile decoy=0 target=0 INFO[11:54:17] 2+ Charge profile decoy=288 target=45348 INFO[11:54:17] 3+ Charge profile decoy=72 target=17344 INFO[11:54:17] 4+ Charge profile decoy=5 target=1277 INFO[11:54:17] 5+ Charge profile decoy=4 target=82 INFO[11:54:17] 6+ Charge profile decoy=0 target=0 INFO[11:54:17] Database search results ions=18248 peptides=13773 psms=64420 INFO[11:54:17] Converged to 0.58 % FDR with 64051 PSMs decoy=369 threshold=0.50077 total=64420 INFO[11:54:17] Converged to 1.00 % FDR with 13259 Peptides decoy=132 threshold=0.82466 total=13391 INFO[11:54:17] Converged to 1.00 % FDR with 17760 Ions decoy=177 threshold=0.765378 total=17937 INFO[11:54:18] Protein inference results decoy=2210 target=2337 INFO[11:54:19] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:54:20] Applying sequential FDR estimation ions=17896 peptides=13423 psms=64016 INFO[11:54:20] Converged to 0.09 % FDR with 63960 PSMs decoy=56 threshold=0.50077 total=64016 INFO[11:54:20] Converged to 0.34 % FDR with 13377 Peptides decoy=46 threshold=0.50077 total=13423 INFO[11:54:20] Converged to 0.26 % FDR with 17850 Ions decoy=46 threshold=0.50077 total=17896 INFO[11:54:21] Post processing identifications INFO[11:54:23] Assigning protein identifications to layers INFO[11:54:23] Processing protein inference INFO[11:54:24] Synchronizing PSMs and proteins INFO[11:54:25] Final report numbers after FDR filtering, and post-processing ions=17850 peptides=13377 proteins=1470 psms=63960 INFO[11:54:25] Saving INFO[11:54:25] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:54:26] Executing Filter v4.8.1 INFO[11:54:26] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:54:26] Processing peptide identification files INFO[11:54:26] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28\interact-S22049-Arjun-28.pep.xml INFO[11:54:32] 1+ Charge profile decoy=0 target=0 INFO[11:54:32] 2+ Charge profile decoy=340 target=46769 INFO[11:54:32] 3+ Charge profile decoy=105 target=18403 INFO[11:54:32] 4+ Charge profile decoy=6 target=1470 INFO[11:54:32] 5+ Charge profile decoy=1 target=122 INFO[11:54:32] 6+ Charge profile decoy=0 target=1 INFO[11:54:32] Database search results ions=18405 peptides=13926 psms=67217 INFO[11:54:32] Converged to 0.68 % FDR with 66765 PSMs decoy=452 threshold=0.500159 total=67217 INFO[11:54:32] Converged to 1.00 % FDR with 13306 Peptides decoy=133 threshold=0.813464 total=13439 INFO[11:54:32] Converged to 1.00 % FDR with 17809 Ions decoy=178 threshold=0.740901 total=17987 INFO[11:54:34] Protein inference results decoy=2210 target=2337 INFO[11:54:34] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:54:35] Applying sequential FDR estimation ions=17965 peptides=13489 psms=66704 INFO[11:54:35] Converged to 0.08 % FDR with 66651 PSMs decoy=53 threshold=0.500159 total=66704 INFO[11:54:35] Converged to 0.29 % FDR with 13450 Peptides decoy=39 threshold=0.501846 total=13489 INFO[11:54:35] Converged to 0.23 % FDR with 17924 Ions decoy=41 threshold=0.501846 total=17965 INFO[11:54:36] Post processing identifications INFO[11:54:38] Assigning protein identifications to layers INFO[11:54:38] Processing protein inference INFO[11:54:39] Synchronizing PSMs and proteins INFO[11:54:40] Final report numbers after FDR filtering, and post-processing ions=17924 peptides=13450 proteins=1512 psms=66651 INFO[11:54:40] Saving INFO[11:54:40] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:54:41] Executing Filter v4.8.1 INFO[11:54:41] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:54:41] Processing peptide identification files INFO[11:54:41] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29\interact-S22049-Arjun-29.pep.xml INFO[11:54:47] 1+ Charge profile decoy=0 target=0 INFO[11:54:47] 2+ Charge profile decoy=299 target=46136 INFO[11:54:47] 3+ Charge profile decoy=85 target=19350 INFO[11:54:47] 4+ Charge profile decoy=6 target=1921 INFO[11:54:47] 5+ Charge profile decoy=1 target=195 INFO[11:54:47] 6+ Charge profile decoy=0 target=10 INFO[11:54:47] Database search results ions=19110 peptides=14412 psms=68003 INFO[11:54:47] Converged to 0.58 % FDR with 67612 PSMs decoy=391 threshold=0.501153 total=68003 INFO[11:54:47] Converged to 0.99 % FDR with 13898 Peptides decoy=138 threshold=0.803952 total=14036 INFO[11:54:47] Converged to 1.00 % FDR with 18606 Ions decoy=186 threshold=0.736165 total=18792 INFO[11:54:49] Protein inference results decoy=2210 target=2337 INFO[11:54:49] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:54:51] Applying sequential FDR estimation ions=18730 peptides=14036 psms=67582 INFO[11:54:51] Converged to 0.06 % FDR with 67539 PSMs decoy=43 threshold=0.502975 total=67582 INFO[11:54:51] Converged to 0.24 % FDR with 14003 Peptides decoy=33 threshold=0.505722 total=14036 INFO[11:54:51] Converged to 0.18 % FDR with 18697 Ions decoy=33 threshold=0.504411 total=18730 INFO[11:54:51] Post processing identifications INFO[11:54:53] Assigning protein identifications to layers INFO[11:54:54] Processing protein inference INFO[11:54:55] Synchronizing PSMs and proteins INFO[11:54:55] Final report numbers after FDR filtering, and post-processing ions=18697 peptides=14003 proteins=1499 psms=67539 INFO[11:54:55] Saving INFO[11:54:56] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:54:56] Executing Filter v4.8.1 INFO[11:54:57] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:54:57] Processing peptide identification files INFO[11:54:57] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3\interact-S22049-Arjun-3.pep.xml INFO[11:55:02] 1+ Charge profile decoy=0 target=0 INFO[11:55:02] 2+ Charge profile decoy=266 target=45729 INFO[11:55:02] 3+ Charge profile decoy=74 target=17283 INFO[11:55:02] 4+ Charge profile decoy=3 target=1048 INFO[11:55:02] 5+ Charge profile decoy=1 target=76 INFO[11:55:02] 6+ Charge profile decoy=0 target=0 INFO[11:55:02] Database search results ions=17551 peptides=13554 psms=64480 INFO[11:55:02] Converged to 0.54 % FDR with 64136 PSMs decoy=344 threshold=0.500038 total=64480 INFO[11:55:02] Converged to 1.00 % FDR with 13127 Peptides decoy=131 threshold=0.809791 total=13258 INFO[11:55:02] Converged to 1.00 % FDR with 17163 Ions decoy=171 threshold=0.703989 total=17334 INFO[11:55:04] Protein inference results decoy=2210 target=2337 INFO[11:55:04] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:55:06] Applying sequential FDR estimation ions=17238 peptides=13241 psms=64109 INFO[11:55:06] Converged to 0.07 % FDR with 64061 PSMs decoy=48 threshold=0.501046 total=64109 INFO[11:55:06] Converged to 0.29 % FDR with 13203 Peptides decoy=38 threshold=0.501365 total=13241 INFO[11:55:06] Converged to 0.22 % FDR with 17200 Ions decoy=38 threshold=0.501365 total=17238 INFO[11:55:06] Post processing identifications INFO[11:55:08] Assigning protein identifications to layers INFO[11:55:09] Processing protein inference INFO[11:55:10] Synchronizing PSMs and proteins INFO[11:55:10] Final report numbers after FDR filtering, and post-processing ions=17200 peptides=13203 proteins=1452 psms=64061 INFO[11:55:10] Saving INFO[11:55:11] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:55:11] Executing Filter v4.8.1 INFO[11:55:12] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:55:12] Processing peptide identification files INFO[11:55:12] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30\interact-S22049-Arjun-30.pep.xml INFO[11:55:17] 1+ Charge profile decoy=0 target=0 INFO[11:55:17] 2+ Charge profile decoy=369 target=46038 INFO[11:55:17] 3+ Charge profile decoy=81 target=15109 INFO[11:55:17] 4+ Charge profile decoy=2 target=708 INFO[11:55:17] 5+ Charge profile decoy=0 target=21 INFO[11:55:17] 6+ Charge profile decoy=0 target=0 INFO[11:55:17] Database search results ions=18112 peptides=13709 psms=62328 INFO[11:55:17] Converged to 0.73 % FDR with 61876 PSMs decoy=452 threshold=0.500294 total=62328 INFO[11:55:17] Converged to 0.99 % FDR with 13086 Peptides decoy=130 threshold=0.831145 total=13216 INFO[11:55:17] Converged to 1.00 % FDR with 17525 Ions decoy=175 threshold=0.76056 total=17700 INFO[11:55:19] Protein inference results decoy=2210 target=2337 INFO[11:55:19] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:55:21] Applying sequential FDR estimation ions=17660 peptides=13258 psms=61803 INFO[11:55:21] Converged to 0.07 % FDR with 61760 PSMs decoy=43 threshold=0.501278 total=61803 INFO[11:55:21] Converged to 0.26 % FDR with 13223 Peptides decoy=35 threshold=0.508713 total=13258 INFO[11:55:21] Converged to 0.20 % FDR with 17625 Ions decoy=35 threshold=0.503151 total=17660 INFO[11:55:21] Post processing identifications INFO[11:55:23] Assigning protein identifications to layers INFO[11:55:23] Processing protein inference INFO[11:55:24] Synchronizing PSMs and proteins INFO[11:55:25] Final report numbers after FDR filtering, and post-processing ions=17625 peptides=13223 proteins=1514 psms=61760 INFO[11:55:25] Saving INFO[11:55:25] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:55:26] Executing Filter v4.8.1 INFO[11:55:26] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:55:26] Processing peptide identification files INFO[11:55:26] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31\interact-S22049-Arjun-31.pep.xml INFO[11:55:31] 1+ Charge profile decoy=0 target=0 INFO[11:55:31] 2+ Charge profile decoy=302 target=38491 INFO[11:55:31] 3+ Charge profile decoy=63 target=13180 INFO[11:55:31] 4+ Charge profile decoy=2 target=481 INFO[11:55:31] 5+ Charge profile decoy=0 target=10 INFO[11:55:31] 6+ Charge profile decoy=0 target=0 INFO[11:55:31] Database search results ions=16601 peptides=12452 psms=52529 INFO[11:55:31] Converged to 0.70 % FDR with 52162 PSMs decoy=367 threshold=0.500608 total=52529 INFO[11:55:31] Converged to 0.99 % FDR with 11970 Peptides decoy=119 threshold=0.832354 total=12089 INFO[11:55:31] Converged to 1.00 % FDR with 16136 Ions decoy=161 threshold=0.770135 total=16297 INFO[11:55:33] Protein inference results decoy=2210 target=2337 INFO[11:55:33] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:55:34] Applying sequential FDR estimation ions=16258 peptides=12111 psms=52131 INFO[11:55:34] Converged to 0.10 % FDR with 52079 PSMs decoy=52 threshold=0.500608 total=52131 INFO[11:55:34] Converged to 0.27 % FDR with 12078 Peptides decoy=33 threshold=0.500608 total=12111 INFO[11:55:34] Converged to 0.22 % FDR with 16223 Ions decoy=35 threshold=0.500608 total=16258 INFO[11:55:34] Post processing identifications INFO[11:55:36] Assigning protein identifications to layers INFO[11:55:36] Processing protein inference INFO[11:55:37] Synchronizing PSMs and proteins INFO[11:55:38] Final report numbers after FDR filtering, and post-processing ions=16223 peptides=12078 proteins=1453 psms=52079 INFO[11:55:38] Saving INFO[11:55:38] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:55:39] Executing Filter v4.8.1 INFO[11:55:39] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:55:39] Processing peptide identification files INFO[11:55:39] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32\interact-S22049-Arjun-32.pep.xml INFO[11:55:44] 1+ Charge profile decoy=0 target=0 INFO[11:55:44] 2+ Charge profile decoy=301 target=38800 INFO[11:55:44] 3+ Charge profile decoy=49 target=12556 INFO[11:55:44] 4+ Charge profile decoy=2 target=514 INFO[11:55:44] 5+ Charge profile decoy=0 target=11 INFO[11:55:44] 6+ Charge profile decoy=0 target=0 INFO[11:55:44] Database search results ions=16311 peptides=12391 psms=52233 INFO[11:55:44] Converged to 0.68 % FDR with 51881 PSMs decoy=352 threshold=0.501884 total=52233 INFO[11:55:44] Converged to 1.00 % FDR with 11925 Peptides decoy=119 threshold=0.829892 total=12044 INFO[11:55:44] Converged to 1.00 % FDR with 15869 Ions decoy=158 threshold=0.753476 total=16027 INFO[11:55:46] Protein inference results decoy=2210 target=2337 INFO[11:55:46] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:55:47] Applying sequential FDR estimation ions=15975 peptides=12058 psms=51850 INFO[11:55:47] Converged to 0.08 % FDR with 51806 PSMs decoy=44 threshold=0.502047 total=51850 INFO[11:55:47] Converged to 0.29 % FDR with 12023 Peptides decoy=35 threshold=0.503924 total=12058 INFO[11:55:47] Converged to 0.23 % FDR with 15939 Ions decoy=36 threshold=0.503924 total=15975 INFO[11:55:47] Post processing identifications INFO[11:55:49] Assigning protein identifications to layers INFO[11:55:49] Processing protein inference INFO[11:55:50] Synchronizing PSMs and proteins INFO[11:55:51] Final report numbers after FDR filtering, and post-processing ions=15939 peptides=12023 proteins=1476 psms=51806 INFO[11:55:51] Saving INFO[11:55:51] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:55:52] Executing Filter v4.8.1 INFO[11:55:52] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:55:52] Processing peptide identification files INFO[11:55:52] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33\interact-S22049-Arjun-33.pep.xml INFO[11:55:57] 1+ Charge profile decoy=0 target=0 INFO[11:55:57] 2+ Charge profile decoy=289 target=39996 INFO[11:55:57] 3+ Charge profile decoy=57 target=14636 INFO[11:55:57] 4+ Charge profile decoy=2 target=773 INFO[11:55:57] 5+ Charge profile decoy=1 target=14 INFO[11:55:57] 6+ Charge profile decoy=0 target=0 INFO[11:55:57] Database search results ions=16779 peptides=12678 psms=55768 INFO[11:55:57] Converged to 0.63 % FDR with 55419 PSMs decoy=349 threshold=0.500481 total=55768 INFO[11:55:57] Converged to 1.00 % FDR with 12226 Peptides decoy=122 threshold=0.814855 total=12348 INFO[11:55:57] Converged to 1.00 % FDR with 16365 Ions decoy=163 threshold=0.731546 total=16528 INFO[11:55:59] Protein inference results decoy=2210 target=2337 INFO[11:55:59] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:56:00] Applying sequential FDR estimation ions=16455 peptides=12357 psms=55393 INFO[11:56:00] Converged to 0.11 % FDR with 55332 PSMs decoy=61 threshold=0.50069 total=55393 INFO[11:56:00] Converged to 0.33 % FDR with 12316 Peptides decoy=41 threshold=0.500848 total=12357 INFO[11:56:00] Converged to 0.26 % FDR with 16412 Ions decoy=43 threshold=0.500848 total=16455 INFO[11:56:01] Post processing identifications INFO[11:56:03] Assigning protein identifications to layers INFO[11:56:03] Processing protein inference INFO[11:56:04] Synchronizing PSMs and proteins INFO[11:56:04] Final report numbers after FDR filtering, and post-processing ions=16412 peptides=12316 proteins=1454 psms=55332 INFO[11:56:04] Saving INFO[11:56:05] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:56:05] Executing Filter v4.8.1 INFO[11:56:06] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:56:06] Processing peptide identification files INFO[11:56:06] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34\interact-S22049-Arjun-34.pep.xml INFO[11:56:11] 1+ Charge profile decoy=0 target=0 INFO[11:56:11] 2+ Charge profile decoy=297 target=43412 INFO[11:56:11] 3+ Charge profile decoy=61 target=15310 INFO[11:56:11] 4+ Charge profile decoy=2 target=716 INFO[11:56:11] 5+ Charge profile decoy=1 target=19 INFO[11:56:11] 6+ Charge profile decoy=0 target=0 INFO[11:56:11] Database search results ions=17200 peptides=13077 psms=59818 INFO[11:56:11] Converged to 0.61 % FDR with 59457 PSMs decoy=361 threshold=0.500301 total=59818 INFO[11:56:11] Converged to 1.00 % FDR with 12610 Peptides decoy=126 threshold=0.804907 total=12736 INFO[11:56:11] Converged to 1.00 % FDR with 16759 Ions decoy=167 threshold=0.724733 total=16926 INFO[11:56:13] Protein inference results decoy=2210 target=2337 INFO[11:56:13] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:56:14] Applying sequential FDR estimation ions=16867 peptides=12744 psms=59419 INFO[11:56:14] Converged to 0.07 % FDR with 59375 PSMs decoy=44 threshold=0.500301 total=59419 INFO[11:56:14] Converged to 0.24 % FDR with 12713 Peptides decoy=31 threshold=0.504208 total=12744 INFO[11:56:14] Converged to 0.19 % FDR with 16835 Ions decoy=32 threshold=0.504208 total=16867 INFO[11:56:15] Post processing identifications INFO[11:56:17] Assigning protein identifications to layers INFO[11:56:17] Processing protein inference INFO[11:56:18] Synchronizing PSMs and proteins INFO[11:56:18] Final report numbers after FDR filtering, and post-processing ions=16835 peptides=12713 proteins=1479 psms=59375 INFO[11:56:18] Saving INFO[11:56:19] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:56:20] Executing Filter v4.8.1 INFO[11:56:20] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:56:20] Processing peptide identification files INFO[11:56:20] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35\interact-S22049-Arjun-35.pep.xml INFO[11:56:25] 1+ Charge profile decoy=0 target=0 INFO[11:56:25] 2+ Charge profile decoy=291 target=38872 INFO[11:56:25] 3+ Charge profile decoy=54 target=11521 INFO[11:56:25] 4+ Charge profile decoy=3 target=340 INFO[11:56:25] 5+ Charge profile decoy=0 target=9 INFO[11:56:25] 6+ Charge profile decoy=0 target=0 INFO[11:56:25] Database search results ions=15897 peptides=12105 psms=51090 INFO[11:56:25] Converged to 0.69 % FDR with 50742 PSMs decoy=348 threshold=0.500788 total=51090 INFO[11:56:25] Converged to 0.99 % FDR with 11679 Peptides decoy=116 threshold=0.775148 total=11795 INFO[11:56:25] Converged to 0.99 % FDR with 15481 Ions decoy=154 threshold=0.72107 total=15635 INFO[11:56:27] Protein inference results decoy=2210 target=2337 INFO[11:56:27] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:56:28] Applying sequential FDR estimation ions=15573 peptides=11785 psms=50708 INFO[11:56:28] Converged to 0.08 % FDR with 50668 PSMs decoy=40 threshold=0.502321 total=50708 INFO[11:56:28] Converged to 0.25 % FDR with 11756 Peptides decoy=29 threshold=0.504729 total=11785 INFO[11:56:28] Converged to 0.19 % FDR with 15543 Ions decoy=30 threshold=0.504729 total=15573 INFO[11:56:28] Post processing identifications INFO[11:56:30] Assigning protein identifications to layers INFO[11:56:30] Processing protein inference INFO[11:56:31] Synchronizing PSMs and proteins INFO[11:56:32] Final report numbers after FDR filtering, and post-processing ions=15543 peptides=11756 proteins=1491 psms=50668 INFO[11:56:32] Saving INFO[11:56:32] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:56:33] Executing Filter v4.8.1 INFO[11:56:33] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:56:33] Processing peptide identification files INFO[11:56:33] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36\interact-S22049-Arjun-36.pep.xml INFO[11:56:38] 1+ Charge profile decoy=0 target=0 INFO[11:56:38] 2+ Charge profile decoy=306 target=39070 INFO[11:56:38] 3+ Charge profile decoy=64 target=11926 INFO[11:56:38] 4+ Charge profile decoy=2 target=319 INFO[11:56:38] 5+ Charge profile decoy=0 target=4 INFO[11:56:38] 6+ Charge profile decoy=0 target=0 INFO[11:56:38] Database search results ions=15758 peptides=11990 psms=51691 INFO[11:56:38] Converged to 0.72 % FDR with 51319 PSMs decoy=372 threshold=0.500881 total=51691 INFO[11:56:38] Converged to 1.00 % FDR with 11528 Peptides decoy=115 threshold=0.828299 total=11643 INFO[11:56:38] Converged to 0.99 % FDR with 15295 Ions decoy=152 threshold=0.773833 total=15447 INFO[11:56:39] Protein inference results decoy=2210 target=2337 INFO[11:56:40] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:56:41] Applying sequential FDR estimation ions=15432 peptides=11667 psms=51311 INFO[11:56:41] Converged to 0.12 % FDR with 51247 PSMs decoy=64 threshold=0.501231 total=51311 INFO[11:56:41] Converged to 0.34 % FDR with 11627 Peptides decoy=40 threshold=0.506336 total=11667 INFO[11:56:41] Converged to 0.27 % FDR with 15391 Ions decoy=41 threshold=0.501501 total=15432 INFO[11:56:41] Post processing identifications INFO[11:56:43] Assigning protein identifications to layers INFO[11:56:43] Processing protein inference INFO[11:56:44] Synchronizing PSMs and proteins INFO[11:56:44] Final report numbers after FDR filtering, and post-processing ions=15391 peptides=11627 proteins=1483 psms=51247 INFO[11:56:44] Saving INFO[11:56:45] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:56:46] Executing Filter v4.8.1 INFO[11:56:46] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:56:46] Processing peptide identification files INFO[11:56:46] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37\interact-S22049-Arjun-37.pep.xml INFO[11:56:52] 1+ Charge profile decoy=0 target=0 INFO[11:56:52] 2+ Charge profile decoy=321 target=48456 INFO[11:56:52] 3+ Charge profile decoy=90 target=19467 INFO[11:56:52] 4+ Charge profile decoy=5 target=1530 INFO[11:56:52] 5+ Charge profile decoy=1 target=125 INFO[11:56:52] 6+ Charge profile decoy=0 target=1 INFO[11:56:52] Database search results ions=18933 peptides=14345 psms=69996 INFO[11:56:52] Converged to 0.60 % FDR with 69579 PSMs decoy=417 threshold=0.500889 total=69996 INFO[11:56:52] Converged to 0.99 % FDR with 13773 Peptides decoy=137 threshold=0.839744 total=13910 INFO[11:56:52] Converged to 1.00 % FDR with 18381 Ions decoy=183 threshold=0.782028 total=18564 INFO[11:56:54] Protein inference results decoy=2210 target=2337 INFO[11:56:54] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:56:55] Applying sequential FDR estimation ions=18541 peptides=13956 psms=69544 INFO[11:56:56] Converged to 0.08 % FDR with 69487 PSMs decoy=57 threshold=0.500889 total=69544 INFO[11:56:56] Converged to 0.31 % FDR with 13913 Peptides decoy=43 threshold=0.501289 total=13956 INFO[11:56:56] Converged to 0.24 % FDR with 18496 Ions decoy=45 threshold=0.501289 total=18541 INFO[11:56:56] Post processing identifications INFO[11:56:58] Assigning protein identifications to layers INFO[11:56:58] Processing protein inference INFO[11:57:00] Synchronizing PSMs and proteins INFO[11:57:00] Final report numbers after FDR filtering, and post-processing ions=18496 peptides=13913 proteins=1479 psms=69487 INFO[11:57:00] Saving INFO[11:57:01] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:57:01] Executing Filter v4.8.1 INFO[11:57:02] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:57:02] Processing peptide identification files INFO[11:57:02] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38\interact-S22049-Arjun-38.pep.xml INFO[11:57:08] 1+ Charge profile decoy=0 target=0 INFO[11:57:08] 2+ Charge profile decoy=364 target=47227 INFO[11:57:08] 3+ Charge profile decoy=88 target=17689 INFO[11:57:08] 4+ Charge profile decoy=4 target=1100 INFO[11:57:08] 5+ Charge profile decoy=0 target=67 INFO[11:57:08] 6+ Charge profile decoy=0 target=0 INFO[11:57:08] Database search results ions=18088 peptides=13943 psms=66539 INFO[11:57:08] Converged to 0.69 % FDR with 66083 PSMs decoy=456 threshold=0.500088 total=66539 INFO[11:57:08] Converged to 1.00 % FDR with 13342 Peptides decoy=133 threshold=0.819135 total=13475 INFO[11:57:08] Converged to 0.99 % FDR with 17489 Ions decoy=174 threshold=0.750991 total=17663 INFO[11:57:10] Protein inference results decoy=2210 target=2337 INFO[11:57:10] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:57:11] Applying sequential FDR estimation ions=17661 peptides=13521 psms=66042 INFO[11:57:11] Converged to 0.07 % FDR with 65993 PSMs decoy=49 threshold=0.500088 total=66042 INFO[11:57:11] Converged to 0.30 % FDR with 13481 Peptides decoy=40 threshold=0.50208 total=13521 INFO[11:57:11] Converged to 0.23 % FDR with 17620 Ions decoy=41 threshold=0.501057 total=17661 INFO[11:57:12] Post processing identifications INFO[11:57:14] Assigning protein identifications to layers INFO[11:57:14] Processing protein inference INFO[11:57:15] Synchronizing PSMs and proteins INFO[11:57:16] Final report numbers after FDR filtering, and post-processing ions=17620 peptides=13481 proteins=1499 psms=65993 INFO[11:57:16] Saving INFO[11:57:16] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:57:17] Executing Filter v4.8.1 INFO[11:57:17] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:57:17] Processing peptide identification files INFO[11:57:17] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39\interact-S22049-Arjun-39.pep.xml INFO[11:57:22] 1+ Charge profile decoy=0 target=0 INFO[11:57:22] 2+ Charge profile decoy=207 target=39637 INFO[11:57:22] 3+ Charge profile decoy=33 target=12082 INFO[11:57:22] 4+ Charge profile decoy=4 target=496 INFO[11:57:22] 5+ Charge profile decoy=0 target=19 INFO[11:57:22] 6+ Charge profile decoy=0 target=0 INFO[11:57:22] Database search results ions=16314 peptides=12700 psms=52478 INFO[11:57:22] Converged to 0.47 % FDR with 52234 PSMs decoy=244 threshold=0.500403 total=52478 INFO[11:57:22] Converged to 1.00 % FDR with 12430 Peptides decoy=124 threshold=0.768089 total=12554 INFO[11:57:22] Converged to 0.99 % FDR with 16085 Ions decoy=160 threshold=0.65742 total=16245 INFO[11:57:23] Protein inference results decoy=2210 target=2337 INFO[11:57:24] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:57:25] Applying sequential FDR estimation ions=16105 peptides=12491 psms=52218 INFO[11:57:25] Converged to 0.11 % FDR with 52160 PSMs decoy=58 threshold=0.500403 total=52218 INFO[11:57:25] Converged to 0.31 % FDR with 12453 Peptides decoy=38 threshold=0.502927 total=12491 INFO[11:57:25] Converged to 0.24 % FDR with 16066 Ions decoy=39 threshold=0.502927 total=16105 INFO[11:57:25] Post processing identifications INFO[11:57:27] Assigning protein identifications to layers INFO[11:57:27] Processing protein inference INFO[11:57:29] Synchronizing PSMs and proteins INFO[11:57:29] Final report numbers after FDR filtering, and post-processing ions=16066 peptides=12453 proteins=1461 psms=52160 INFO[11:57:29] Saving INFO[11:57:29] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:57:30] Executing Filter v4.8.1 INFO[11:57:30] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:57:30] Processing peptide identification files INFO[11:57:30] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4\interact-S22049-Arjun-4.pep.xml INFO[11:57:36] 1+ Charge profile decoy=0 target=0 INFO[11:57:36] 2+ Charge profile decoy=275 target=43830 INFO[11:57:36] 3+ Charge profile decoy=68 target=16151 INFO[11:57:36] 4+ Charge profile decoy=3 target=855 INFO[11:57:36] 5+ Charge profile decoy=1 target=42 INFO[11:57:36] 6+ Charge profile decoy=0 target=0 INFO[11:57:36] Database search results ions=16665 peptides=12783 psms=61225 INFO[11:57:36] Converged to 0.57 % FDR with 60878 PSMs decoy=347 threshold=0.500705 total=61225 INFO[11:57:36] Converged to 1.00 % FDR with 12347 Peptides decoy=123 threshold=0.822504 total=12470 INFO[11:57:36] Converged to 1.00 % FDR with 16258 Ions decoy=162 threshold=0.746847 total=16420 INFO[11:57:38] Protein inference results decoy=2210 target=2337 INFO[11:57:38] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:57:39] Applying sequential FDR estimation ions=16349 peptides=12470 psms=60850 INFO[11:57:39] Converged to 0.08 % FDR with 60801 PSMs decoy=49 threshold=0.500705 total=60850 INFO[11:57:39] Converged to 0.31 % FDR with 12431 Peptides decoy=39 threshold=0.500705 total=12470 INFO[11:57:39] Converged to 0.24 % FDR with 16310 Ions decoy=39 threshold=0.500705 total=16349 INFO[11:57:39] Post processing identifications INFO[11:57:41] Assigning protein identifications to layers INFO[11:57:42] Processing protein inference INFO[11:57:43] Synchronizing PSMs and proteins INFO[11:57:43] Final report numbers after FDR filtering, and post-processing ions=16310 peptides=12431 proteins=1434 psms=60801 INFO[11:57:43] Saving INFO[11:57:44] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:57:44] Executing Filter v4.8.1 INFO[11:57:45] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:57:45] Processing peptide identification files INFO[11:57:45] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40\interact-S22049-Arjun-40.pep.xml INFO[11:57:50] 1+ Charge profile decoy=0 target=0 INFO[11:57:50] 2+ Charge profile decoy=243 target=41902 INFO[11:57:50] 3+ Charge profile decoy=73 target=17331 INFO[11:57:50] 4+ Charge profile decoy=3 target=1456 INFO[11:57:50] 5+ Charge profile decoy=2 target=100 INFO[11:57:50] 6+ Charge profile decoy=0 target=0 INFO[11:57:50] Database search results ions=17651 peptides=13368 psms=61110 INFO[11:57:50] Converged to 0.53 % FDR with 60789 PSMs decoy=321 threshold=0.500918 total=61110 INFO[11:57:50] Converged to 0.99 % FDR with 12971 Peptides decoy=129 threshold=0.773309 total=13100 INFO[11:57:50] Converged to 1.00 % FDR with 17285 Ions decoy=172 threshold=0.664019 total=17457 INFO[11:57:52] Protein inference results decoy=2210 target=2337 INFO[11:57:52] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:57:53] Applying sequential FDR estimation ions=17364 peptides=13084 psms=60771 INFO[11:57:53] Converged to 0.07 % FDR with 60728 PSMs decoy=43 threshold=0.500918 total=60771 INFO[11:57:53] Converged to 0.25 % FDR with 13052 Peptides decoy=32 threshold=0.502571 total=13084 INFO[11:57:53] Converged to 0.18 % FDR with 17332 Ions decoy=32 threshold=0.502571 total=17364 INFO[11:57:54] Post processing identifications INFO[11:57:56] Assigning protein identifications to layers INFO[11:57:56] Processing protein inference INFO[11:57:57] Synchronizing PSMs and proteins INFO[11:57:57] Final report numbers after FDR filtering, and post-processing ions=17332 peptides=13052 proteins=1434 psms=60728 INFO[11:57:57] Saving INFO[11:57:58] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:57:59] Executing Filter v4.8.1 INFO[11:57:59] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:57:59] Processing peptide identification files INFO[11:57:59] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41\interact-S22049-Arjun-41.pep.xml INFO[11:58:04] 1+ Charge profile decoy=0 target=0 INFO[11:58:04] 2+ Charge profile decoy=258 target=43024 INFO[11:58:04] 3+ Charge profile decoy=63 target=15902 INFO[11:58:04] 4+ Charge profile decoy=3 target=932 INFO[11:58:04] 5+ Charge profile decoy=1 target=38 INFO[11:58:04] 6+ Charge profile decoy=0 target=0 INFO[11:58:04] Database search results ions=17889 peptides=13538 psms=60221 INFO[11:58:04] Converged to 0.54 % FDR with 59896 PSMs decoy=325 threshold=0.500857 total=60221 INFO[11:58:05] Converged to 1.00 % FDR with 13129 Peptides decoy=131 threshold=0.800114 total=13260 INFO[11:58:05] Converged to 1.00 % FDR with 17518 Ions decoy=175 threshold=0.723982 total=17693 INFO[11:58:06] Protein inference results decoy=2210 target=2337 INFO[11:58:06] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:58:08] Applying sequential FDR estimation ions=17597 peptides=13247 psms=59871 INFO[11:58:08] Converged to 0.09 % FDR with 59816 PSMs decoy=55 threshold=0.50143 total=59871 INFO[11:58:08] Converged to 0.30 % FDR with 13207 Peptides decoy=40 threshold=0.50143 total=13247 INFO[11:58:08] Converged to 0.23 % FDR with 17556 Ions decoy=41 threshold=0.50143 total=17597 INFO[11:58:08] Post processing identifications INFO[11:58:10] Assigning protein identifications to layers INFO[11:58:10] Processing protein inference INFO[11:58:11] Synchronizing PSMs and proteins INFO[11:58:12] Final report numbers after FDR filtering, and post-processing ions=17556 peptides=13207 proteins=1473 psms=59816 INFO[11:58:12] Saving INFO[11:58:12] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:58:13] Executing Filter v4.8.1 INFO[11:58:13] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:58:13] Processing peptide identification files INFO[11:58:13] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42\interact-S22049-Arjun-42.pep.xml INFO[11:58:19] 1+ Charge profile decoy=0 target=0 INFO[11:58:19] 2+ Charge profile decoy=310 target=43518 INFO[11:58:19] 3+ Charge profile decoy=81 target=17102 INFO[11:58:19] 4+ Charge profile decoy=5 target=1045 INFO[11:58:19] 5+ Charge profile decoy=2 target=47 INFO[11:58:19] 6+ Charge profile decoy=0 target=0 INFO[11:58:19] Database search results ions=17980 peptides=13811 psms=62110 INFO[11:58:19] Converged to 0.64 % FDR with 61712 PSMs decoy=398 threshold=0.500182 total=62110 INFO[11:58:19] Converged to 1.00 % FDR with 13312 Peptides decoy=133 threshold=0.767465 total=13445 INFO[11:58:19] Converged to 1.00 % FDR with 17471 Ions decoy=174 threshold=0.715943 total=17645 INFO[11:58:20] Protein inference results decoy=2210 target=2337 INFO[11:58:21] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:58:22] Applying sequential FDR estimation ions=17613 peptides=13448 psms=61678 INFO[11:58:22] Converged to 0.07 % FDR with 61635 PSMs decoy=43 threshold=0.501313 total=61678 INFO[11:58:22] Converged to 0.21 % FDR with 13420 Peptides decoy=28 threshold=0.504016 total=13448 INFO[11:58:22] Converged to 0.17 % FDR with 17583 Ions decoy=30 threshold=0.504016 total=17613 INFO[11:58:22] Post processing identifications INFO[11:58:25] Assigning protein identifications to layers INFO[11:58:25] Processing protein inference INFO[11:58:26] Synchronizing PSMs and proteins INFO[11:58:26] Final report numbers after FDR filtering, and post-processing ions=17583 peptides=13420 proteins=1485 psms=61635 INFO[11:58:26] Saving INFO[11:58:27] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:58:27] Executing Filter v4.8.1 INFO[11:58:28] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:58:28] Processing peptide identification files INFO[11:58:28] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43\interact-S22049-Arjun-43.pep.xml INFO[11:58:33] 1+ Charge profile decoy=0 target=0 INFO[11:58:33] 2+ Charge profile decoy=262 target=43638 INFO[11:58:33] 3+ Charge profile decoy=90 target=18829 INFO[11:58:33] 4+ Charge profile decoy=5 target=1590 INFO[11:58:33] 5+ Charge profile decoy=1 target=128 INFO[11:58:33] 6+ Charge profile decoy=0 target=0 INFO[11:58:33] Database search results ions=18459 peptides=13814 psms=64543 INFO[11:58:33] Converged to 0.56 % FDR with 64185 PSMs decoy=358 threshold=0.500459 total=64543 INFO[11:58:33] Converged to 1.00 % FDR with 13350 Peptides decoy=133 threshold=0.794659 total=13483 INFO[11:58:33] Converged to 1.00 % FDR with 18017 Ions decoy=180 threshold=0.714088 total=18197 INFO[11:58:35] Protein inference results decoy=2210 target=2337 INFO[11:58:35] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:58:37] Applying sequential FDR estimation ions=18134 peptides=13491 psms=64159 INFO[11:58:37] Converged to 0.06 % FDR with 64121 PSMs decoy=38 threshold=0.500482 total=64159 INFO[11:58:37] Converged to 0.19 % FDR with 13465 Peptides decoy=26 threshold=0.500918 total=13491 INFO[11:58:37] Converged to 0.15 % FDR with 18107 Ions decoy=27 threshold=0.500918 total=18134 INFO[11:58:37] Post processing identifications INFO[11:58:39] Assigning protein identifications to layers INFO[11:58:40] Processing protein inference INFO[11:58:41] Synchronizing PSMs and proteins INFO[11:58:41] Final report numbers after FDR filtering, and post-processing ions=18107 peptides=13465 proteins=1449 psms=64121 INFO[11:58:41] Saving INFO[11:58:42] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:58:43] Executing Filter v4.8.1 INFO[11:58:43] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:58:43] Processing peptide identification files INFO[11:58:43] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44\interact-S22049-Arjun-44.pep.xml INFO[11:58:48] 1+ Charge profile decoy=0 target=0 INFO[11:58:48] 2+ Charge profile decoy=273 target=43702 INFO[11:58:48] 3+ Charge profile decoy=61 target=15147 INFO[11:58:48] 4+ Charge profile decoy=2 target=710 INFO[11:58:48] 5+ Charge profile decoy=0 target=24 INFO[11:58:48] 6+ Charge profile decoy=0 target=0 INFO[11:58:48] Database search results ions=17019 peptides=13180 psms=59919 INFO[11:58:49] Converged to 0.56 % FDR with 59583 PSMs decoy=336 threshold=0.500279 total=59919 INFO[11:58:49] Converged to 1.00 % FDR with 12804 Peptides decoy=128 threshold=0.773678 total=12932 INFO[11:58:49] Converged to 1.00 % FDR with 16672 Ions decoy=166 threshold=0.695697 total=16838 INFO[11:58:50] Protein inference results decoy=2210 target=2337 INFO[11:58:50] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:58:52] Applying sequential FDR estimation ions=16705 peptides=12867 psms=59539 INFO[11:58:52] Converged to 0.07 % FDR with 59496 PSMs decoy=43 threshold=0.500279 total=59539 INFO[11:58:52] Converged to 0.23 % FDR with 12838 Peptides decoy=29 threshold=0.503978 total=12867 INFO[11:58:52] Converged to 0.18 % FDR with 16675 Ions decoy=30 threshold=0.503978 total=16705 INFO[11:58:52] Post processing identifications INFO[11:58:54] Assigning protein identifications to layers INFO[11:58:54] Processing protein inference INFO[11:58:55] Synchronizing PSMs and proteins INFO[11:58:56] Final report numbers after FDR filtering, and post-processing ions=16675 peptides=12838 proteins=1473 psms=59496 INFO[11:58:56] Saving INFO[11:58:56] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:58:57] Executing Filter v4.8.1 INFO[11:58:57] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:58:57] Processing peptide identification files INFO[11:58:57] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45\interact-S22049-Arjun-45.pep.xml INFO[11:59:03] 1+ Charge profile decoy=0 target=0 INFO[11:59:03] 2+ Charge profile decoy=344 target=44634 INFO[11:59:03] 3+ Charge profile decoy=87 target=16271 INFO[11:59:03] 4+ Charge profile decoy=5 target=883 INFO[11:59:03] 5+ Charge profile decoy=1 target=37 INFO[11:59:03] 6+ Charge profile decoy=0 target=0 INFO[11:59:03] Database search results ions=18118 peptides=13977 psms=62262 INFO[11:59:03] Converged to 0.71 % FDR with 61825 PSMs decoy=437 threshold=0.500028 total=62262 INFO[11:59:03] Converged to 1.00 % FDR with 13445 Peptides decoy=134 threshold=0.776823 total=13579 INFO[11:59:03] Converged to 1.00 % FDR with 17608 Ions decoy=176 threshold=0.682824 total=17784 INFO[11:59:05] Protein inference results decoy=2210 target=2337 INFO[11:59:05] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:59:06] Applying sequential FDR estimation ions=17727 peptides=13587 psms=61790 INFO[11:59:06] Converged to 0.09 % FDR with 61735 PSMs decoy=55 threshold=0.500028 total=61790 INFO[11:59:06] Converged to 0.27 % FDR with 13550 Peptides decoy=37 threshold=0.500336 total=13587 INFO[11:59:06] Converged to 0.21 % FDR with 17689 Ions decoy=38 threshold=0.500336 total=17727 INFO[11:59:06] Post processing identifications INFO[11:59:09] Assigning protein identifications to layers INFO[11:59:09] Processing protein inference INFO[11:59:10] Synchronizing PSMs and proteins INFO[11:59:11] Final report numbers after FDR filtering, and post-processing ions=17688 peptides=13549 proteins=1480 psms=61734 INFO[11:59:11] Saving INFO[11:59:11] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:59:12] Executing Filter v4.8.1 INFO[11:59:12] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:59:12] Processing peptide identification files INFO[11:59:12] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46\interact-S22049-Arjun-46.pep.xml INFO[11:59:17] 1+ Charge profile decoy=0 target=0 INFO[11:59:17] 2+ Charge profile decoy=277 target=43474 INFO[11:59:17] 3+ Charge profile decoy=66 target=15813 INFO[11:59:17] 4+ Charge profile decoy=2 target=900 INFO[11:59:17] 5+ Charge profile decoy=1 target=46 INFO[11:59:17] 6+ Charge profile decoy=0 target=0 INFO[11:59:17] Database search results ions=17624 peptides=13493 psms=60579 INFO[11:59:17] Converged to 0.57 % FDR with 60233 PSMs decoy=346 threshold=0.500064 total=60579 INFO[11:59:17] Converged to 1.00 % FDR with 13060 Peptides decoy=130 threshold=0.822179 total=13190 INFO[11:59:17] Converged to 1.00 % FDR with 17222 Ions decoy=172 threshold=0.734091 total=17394 INFO[11:59:19] Protein inference results decoy=2210 target=2337 INFO[11:59:19] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:59:21] Applying sequential FDR estimation ions=17300 peptides=13171 psms=60197 INFO[11:59:21] Converged to 0.08 % FDR with 60146 PSMs decoy=51 threshold=0.500064 total=60197 INFO[11:59:21] Converged to 0.30 % FDR with 13131 Peptides decoy=40 threshold=0.501669 total=13171 INFO[11:59:21] Converged to 0.23 % FDR with 17260 Ions decoy=40 threshold=0.501669 total=17300 INFO[11:59:21] Post processing identifications INFO[11:59:23] Assigning protein identifications to layers INFO[11:59:23] Processing protein inference INFO[11:59:25] Synchronizing PSMs and proteins INFO[11:59:25] Final report numbers after FDR filtering, and post-processing ions=17260 peptides=13131 proteins=1476 psms=60146 INFO[11:59:25] Saving INFO[11:59:25] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:59:26] Executing Filter v4.8.1 INFO[11:59:26] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:59:26] Processing peptide identification files INFO[11:59:26] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47\interact-S22049-Arjun-47.pep.xml INFO[11:59:32] 1+ Charge profile decoy=0 target=0 INFO[11:59:32] 2+ Charge profile decoy=249 target=43475 INFO[11:59:32] 3+ Charge profile decoy=76 target=17150 INFO[11:59:32] 4+ Charge profile decoy=5 target=1228 INFO[11:59:32] 5+ Charge profile decoy=2 target=80 INFO[11:59:32] 6+ Charge profile decoy=0 target=1 INFO[11:59:32] Database search results ions=18014 peptides=13926 psms=62266 INFO[11:59:32] Converged to 0.54 % FDR with 61934 PSMs decoy=332 threshold=0.500035 total=62266 INFO[11:59:32] Converged to 1.00 % FDR with 13512 Peptides decoy=135 threshold=0.790912 total=13647 INFO[11:59:32] Converged to 1.00 % FDR with 17654 Ions decoy=176 threshold=0.685359 total=17830 INFO[11:59:34] Protein inference results decoy=2210 target=2337 INFO[11:59:34] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:59:35] Applying sequential FDR estimation ions=17707 peptides=13621 psms=61895 INFO[11:59:35] Converged to 0.07 % FDR with 61852 PSMs decoy=43 threshold=0.500035 total=61895 INFO[11:59:35] Converged to 0.26 % FDR with 13585 Peptides decoy=36 threshold=0.500623 total=13621 INFO[11:59:35] Converged to 0.21 % FDR with 17670 Ions decoy=37 threshold=0.500623 total=17707 INFO[11:59:36] Post processing identifications INFO[11:59:38] Assigning protein identifications to layers INFO[11:59:38] Processing protein inference INFO[11:59:39] Synchronizing PSMs and proteins INFO[11:59:40] Final report numbers after FDR filtering, and post-processing ions=17670 peptides=13585 proteins=1470 psms=61852 INFO[11:59:40] Saving INFO[11:59:40] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:59:41] Executing Filter v4.8.1 INFO[11:59:41] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:59:41] Processing peptide identification files INFO[11:59:41] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48\interact-S22049-Arjun-48.pep.xml INFO[11:59:47] 1+ Charge profile decoy=0 target=0 INFO[11:59:47] 2+ Charge profile decoy=313 target=44412 INFO[11:59:47] 3+ Charge profile decoy=83 target=15771 INFO[11:59:47] 4+ Charge profile decoy=6 target=837 INFO[11:59:47] 5+ Charge profile decoy=2 target=32 INFO[11:59:47] 6+ Charge profile decoy=0 target=0 INFO[11:59:47] Database search results ions=17350 peptides=13373 psms=61456 INFO[11:59:47] Converged to 0.66 % FDR with 61052 PSMs decoy=404 threshold=0.500392 total=61456 INFO[11:59:47] Converged to 1.00 % FDR with 12863 Peptides decoy=128 threshold=0.78973 total=12991 INFO[11:59:47] Converged to 1.00 % FDR with 16857 Ions decoy=168 threshold=0.733123 total=17025 INFO[11:59:48] Protein inference results decoy=2210 target=2337 INFO[11:59:49] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[11:59:50] Applying sequential FDR estimation ions=16987 peptides=13012 psms=61012 INFO[11:59:50] Converged to 0.07 % FDR with 60970 PSMs decoy=42 threshold=0.500392 total=61012 INFO[11:59:50] Converged to 0.26 % FDR with 12978 Peptides decoy=34 threshold=0.501839 total=13012 INFO[11:59:50] Converged to 0.21 % FDR with 16952 Ions decoy=35 threshold=0.501839 total=16987 INFO[11:59:50] Post processing identifications INFO[11:59:52] Assigning protein identifications to layers INFO[11:59:53] Processing protein inference INFO[11:59:54] Synchronizing PSMs and proteins INFO[11:59:54] Final report numbers after FDR filtering, and post-processing ions=16952 peptides=12978 proteins=1485 psms=60970 INFO[11:59:54] Saving INFO[11:59:55] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[11:59:55] Executing Filter v4.8.1 INFO[11:59:56] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[11:59:56] Processing peptide identification files INFO[11:59:56] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49\interact-S22049-Arjun-49.pep.xml INFO[12:00:01] 1+ Charge profile decoy=0 target=0 INFO[12:00:01] 2+ Charge profile decoy=288 target=45390 INFO[12:00:01] 3+ Charge profile decoy=80 target=18586 INFO[12:00:01] 4+ Charge profile decoy=11 target=1513 INFO[12:00:01] 5+ Charge profile decoy=2 target=138 INFO[12:00:01] 6+ Charge profile decoy=0 target=1 INFO[12:00:02] Database search results ions=18868 peptides=14369 psms=66009 INFO[12:00:02] Converged to 0.58 % FDR with 65628 PSMs decoy=381 threshold=0.500335 total=66009 INFO[12:00:02] Converged to 1.00 % FDR with 13857 Peptides decoy=138 threshold=0.816645 total=13995 INFO[12:00:02] Converged to 0.99 % FDR with 18392 Ions decoy=183 threshold=0.733013 total=18575 INFO[12:00:03] Protein inference results decoy=2210 target=2337 INFO[12:00:03] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:00:05] Applying sequential FDR estimation ions=18510 peptides=14013 psms=65589 INFO[12:00:05] Converged to 0.07 % FDR with 65540 PSMs decoy=49 threshold=0.500335 total=65589 INFO[12:00:05] Converged to 0.27 % FDR with 13975 Peptides decoy=38 threshold=0.500335 total=14013 INFO[12:00:05] Converged to 0.21 % FDR with 18471 Ions decoy=39 threshold=0.500335 total=18510 INFO[12:00:05] Post processing identifications INFO[12:00:08] Assigning protein identifications to layers INFO[12:00:08] Processing protein inference INFO[12:00:09] Synchronizing PSMs and proteins INFO[12:00:09] Final report numbers after FDR filtering, and post-processing ions=18471 peptides=13975 proteins=1482 psms=65540 INFO[12:00:09] Saving INFO[12:00:10] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:00:10] Executing Filter v4.8.1 INFO[12:00:11] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:00:11] Processing peptide identification files INFO[12:00:11] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5\interact-S22049-Arjun-5.pep.xml INFO[12:00:16] 1+ Charge profile decoy=0 target=0 INFO[12:00:16] 2+ Charge profile decoy=286 target=44903 INFO[12:00:16] 3+ Charge profile decoy=54 target=11874 INFO[12:00:16] 4+ Charge profile decoy=1 target=269 INFO[12:00:16] 5+ Charge profile decoy=0 target=1 INFO[12:00:16] 6+ Charge profile decoy=0 target=0 INFO[12:00:16] Database search results ions=11999 peptides=9902 psms=57388 INFO[12:00:16] Converged to 0.60 % FDR with 57047 PSMs decoy=341 threshold=0.500344 total=57388 INFO[12:00:16] Converged to 0.99 % FDR with 9485 Peptides decoy=94 threshold=0.861515 total=9579 INFO[12:00:16] Converged to 0.99 % FDR with 11597 Ions decoy=115 threshold=0.814782 total=11712 INFO[12:00:18] Protein inference results decoy=2210 target=2337 INFO[12:00:18] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:00:19] Applying sequential FDR estimation ions=11715 peptides=9618 psms=57028 INFO[12:00:19] Converged to 0.07 % FDR with 56987 PSMs decoy=41 threshold=0.500522 total=57028 INFO[12:00:19] Converged to 0.30 % FDR with 9589 Peptides decoy=29 threshold=0.500522 total=9618 INFO[12:00:19] Converged to 0.26 % FDR with 11685 Ions decoy=30 threshold=0.500522 total=11715 INFO[12:00:19] Post processing identifications INFO[12:00:21] Assigning protein identifications to layers INFO[12:00:21] Processing protein inference INFO[12:00:23] Synchronizing PSMs and proteins INFO[12:00:23] Final report numbers after FDR filtering, and post-processing ions=11685 peptides=9589 proteins=1446 psms=56987 INFO[12:00:23] Saving INFO[12:00:23] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:00:24] Executing Filter v4.8.1 INFO[12:00:24] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:00:24] Processing peptide identification files INFO[12:00:24] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50\interact-S22049-Arjun-50.pep.xml INFO[12:00:30] 1+ Charge profile decoy=0 target=0 INFO[12:00:30] 2+ Charge profile decoy=329 target=44755 INFO[12:00:30] 3+ Charge profile decoy=84 target=17347 INFO[12:00:30] 4+ Charge profile decoy=11 target=1059 INFO[12:00:30] 5+ Charge profile decoy=1 target=43 INFO[12:00:30] 6+ Charge profile decoy=0 target=0 INFO[12:00:30] Database search results ions=18146 peptides=13911 psms=63629 INFO[12:00:30] Converged to 0.67 % FDR with 63204 PSMs decoy=425 threshold=0.500104 total=63629 INFO[12:00:30] Converged to 1.00 % FDR with 13363 Peptides decoy=133 threshold=0.828071 total=13496 INFO[12:00:30] Converged to 1.00 % FDR with 17640 Ions decoy=176 threshold=0.748056 total=17816 INFO[12:00:32] Protein inference results decoy=2210 target=2337 INFO[12:00:32] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:00:33] Applying sequential FDR estimation ions=17757 peptides=13523 psms=63164 INFO[12:00:33] Converged to 0.08 % FDR with 63111 PSMs decoy=53 threshold=0.500104 total=63164 INFO[12:00:33] Converged to 0.28 % FDR with 13485 Peptides decoy=38 threshold=0.501774 total=13523 INFO[12:00:33] Converged to 0.21 % FDR with 17719 Ions decoy=38 threshold=0.501774 total=17757 INFO[12:00:34] Post processing identifications INFO[12:00:36] Assigning protein identifications to layers INFO[12:00:36] Processing protein inference INFO[12:00:37] Synchronizing PSMs and proteins INFO[12:00:38] Final report numbers after FDR filtering, and post-processing ions=17719 peptides=13485 proteins=1471 psms=63111 INFO[12:00:38] Saving INFO[12:00:38] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:00:39] Executing Filter v4.8.1 INFO[12:00:39] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:00:39] Processing peptide identification files INFO[12:00:39] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51\interact-S22049-Arjun-51.pep.xml INFO[12:00:45] 1+ Charge profile decoy=0 target=0 INFO[12:00:45] 2+ Charge profile decoy=289 target=45784 INFO[12:00:45] 3+ Charge profile decoy=79 target=18947 INFO[12:00:45] 4+ Charge profile decoy=5 target=1507 INFO[12:00:45] 5+ Charge profile decoy=2 target=124 INFO[12:00:45] 6+ Charge profile decoy=0 target=2 INFO[12:00:45] Database search results ions=18533 peptides=14129 psms=66739 INFO[12:00:45] Converged to 0.57 % FDR with 66364 PSMs decoy=375 threshold=0.50047 total=66739 INFO[12:00:45] Converged to 1.00 % FDR with 13638 Peptides decoy=136 threshold=0.791979 total=13774 INFO[12:00:45] Converged to 1.00 % FDR with 18080 Ions decoy=180 threshold=0.727551 total=18260 INFO[12:00:47] Protein inference results decoy=2210 target=2337 INFO[12:00:47] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:00:48] Applying sequential FDR estimation ions=18170 peptides=13770 psms=66309 INFO[12:00:48] Converged to 0.05 % FDR with 66275 PSMs decoy=34 threshold=0.50047 total=66309 INFO[12:00:48] Converged to 0.20 % FDR with 13742 Peptides decoy=28 threshold=0.502542 total=13770 INFO[12:00:48] Converged to 0.16 % FDR with 18141 Ions decoy=29 threshold=0.502542 total=18170 INFO[12:00:49] Post processing identifications INFO[12:00:51] Assigning protein identifications to layers INFO[12:00:51] Processing protein inference INFO[12:00:52] Synchronizing PSMs and proteins INFO[12:00:53] Final report numbers after FDR filtering, and post-processing ions=18141 peptides=13742 proteins=1468 psms=66275 INFO[12:00:53] Saving INFO[12:00:53] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:00:54] Executing Filter v4.8.1 INFO[12:00:54] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:00:54] Processing peptide identification files INFO[12:00:54] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52\interact-S22049-Arjun-52.pep.xml INFO[12:01:00] 1+ Charge profile decoy=0 target=0 INFO[12:01:00] 2+ Charge profile decoy=270 target=44716 INFO[12:01:00] 3+ Charge profile decoy=71 target=17004 INFO[12:01:00] 4+ Charge profile decoy=5 target=1180 INFO[12:01:00] 5+ Charge profile decoy=1 target=89 INFO[12:01:00] 6+ Charge profile decoy=0 target=0 INFO[12:01:00] Database search results ions=17723 peptides=13657 psms=63336 INFO[12:01:00] Converged to 0.55 % FDR with 62989 PSMs decoy=347 threshold=0.501369 total=63336 INFO[12:01:00] Converged to 1.00 % FDR with 13213 Peptides decoy=132 threshold=0.779899 total=13345 INFO[12:01:00] Converged to 0.99 % FDR with 17290 Ions decoy=172 threshold=0.720838 total=17462 INFO[12:01:02] Protein inference results decoy=2210 target=2337 INFO[12:01:02] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:01:04] Applying sequential FDR estimation ions=17397 peptides=13331 psms=62950 INFO[12:01:04] Converged to 0.07 % FDR with 62909 PSMs decoy=41 threshold=0.501369 total=62950 INFO[12:01:04] Converged to 0.25 % FDR with 13298 Peptides decoy=33 threshold=0.507679 total=13331 INFO[12:01:04] Converged to 0.19 % FDR with 17364 Ions decoy=33 threshold=0.507679 total=17397 INFO[12:01:04] Post processing identifications INFO[12:01:07] Assigning protein identifications to layers INFO[12:01:07] Processing protein inference INFO[12:01:08] Synchronizing PSMs and proteins INFO[12:01:09] Final report numbers after FDR filtering, and post-processing ions=17364 peptides=13298 proteins=1474 psms=62909 INFO[12:01:09] Saving INFO[12:01:09] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:01:10] Executing Filter v4.8.1 INFO[12:01:10] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:01:10] Processing peptide identification files INFO[12:01:10] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53\interact-S22049-Arjun-53.pep.xml INFO[12:01:16] 1+ Charge profile decoy=0 target=0 INFO[12:01:16] 2+ Charge profile decoy=357 target=49194 INFO[12:01:16] 3+ Charge profile decoy=78 target=16489 INFO[12:01:16] 4+ Charge profile decoy=6 target=811 INFO[12:01:16] 5+ Charge profile decoy=1 target=35 INFO[12:01:16] 6+ Charge profile decoy=0 target=0 INFO[12:01:17] Database search results ions=16678 peptides=12866 psms=66971 INFO[12:01:17] Converged to 0.66 % FDR with 66529 PSMs decoy=442 threshold=0.500126 total=66971 INFO[12:01:17] Converged to 1.00 % FDR with 12309 Peptides decoy=123 threshold=0.815602 total=12432 INFO[12:01:17] Converged to 1.00 % FDR with 16132 Ions decoy=161 threshold=0.771826 total=16293 INFO[12:01:19] Protein inference results decoy=2210 target=2337 INFO[12:01:19] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:01:20] Applying sequential FDR estimation ions=16278 peptides=12468 psms=66493 INFO[12:01:20] Converged to 0.09 % FDR with 66433 PSMs decoy=60 threshold=0.500126 total=66493 INFO[12:01:20] Converged to 0.24 % FDR with 12438 Peptides decoy=30 threshold=0.500126 total=12468 INFO[12:01:20] Converged to 0.19 % FDR with 16247 Ions decoy=31 threshold=0.500126 total=16278 INFO[12:01:21] Post processing identifications INFO[12:01:24] Assigning protein identifications to layers INFO[12:01:24] Processing protein inference INFO[12:01:25] Synchronizing PSMs and proteins INFO[12:01:26] Final report numbers after FDR filtering, and post-processing ions=16247 peptides=12438 proteins=1469 psms=66433 INFO[12:01:26] Saving INFO[12:01:27] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:01:27] Executing Filter v4.8.1 INFO[12:01:28] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:01:28] Processing peptide identification files INFO[12:01:28] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54\interact-S22049-Arjun-54.pep.xml INFO[12:01:34] 1+ Charge profile decoy=0 target=0 INFO[12:01:34] 2+ Charge profile decoy=327 target=45803 INFO[12:01:34] 3+ Charge profile decoy=83 target=16465 INFO[12:01:34] 4+ Charge profile decoy=6 target=1026 INFO[12:01:34] 5+ Charge profile decoy=1 target=55 INFO[12:01:34] 6+ Charge profile decoy=0 target=0 INFO[12:01:35] Database search results ions=17820 peptides=13724 psms=63766 INFO[12:01:35] Converged to 0.66 % FDR with 63349 PSMs decoy=417 threshold=0.500608 total=63766 INFO[12:01:35] Converged to 1.00 % FDR with 13165 Peptides decoy=131 threshold=0.82717 total=13296 INFO[12:01:35] Converged to 1.00 % FDR with 17285 Ions decoy=172 threshold=0.773914 total=17457 INFO[12:01:37] Protein inference results decoy=2210 target=2337 INFO[12:01:37] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:01:38] Applying sequential FDR estimation ions=17435 peptides=13341 psms=63311 INFO[12:01:38] Converged to 0.09 % FDR with 63255 PSMs decoy=56 threshold=0.500608 total=63311 INFO[12:01:38] Converged to 0.37 % FDR with 13292 Peptides decoy=49 threshold=0.500608 total=13341 INFO[12:01:38] Converged to 0.28 % FDR with 17386 Ions decoy=49 threshold=0.500608 total=17435 INFO[12:01:39] Post processing identifications INFO[12:01:41] Assigning protein identifications to layers INFO[12:01:42] Processing protein inference INFO[12:01:43] Synchronizing PSMs and proteins INFO[12:01:44] Final report numbers after FDR filtering, and post-processing ions=17386 peptides=13292 proteins=1479 psms=63255 INFO[12:01:44] Saving INFO[12:01:45] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:01:45] Executing Filter v4.8.1 INFO[12:01:46] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:01:46] Processing peptide identification files INFO[12:01:46] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55\interact-S22049-Arjun-55.pep.xml INFO[12:01:52] 1+ Charge profile decoy=0 target=0 INFO[12:01:52] 2+ Charge profile decoy=266 target=44771 INFO[12:01:52] 3+ Charge profile decoy=77 target=16265 INFO[12:01:52] 4+ Charge profile decoy=5 target=949 INFO[12:01:52] 5+ Charge profile decoy=1 target=44 INFO[12:01:52] 6+ Charge profile decoy=0 target=0 INFO[12:01:52] Database search results ions=17710 peptides=13568 psms=62378 INFO[12:01:52] Converged to 0.56 % FDR with 62029 PSMs decoy=349 threshold=0.500266 total=62378 INFO[12:01:52] Converged to 1.00 % FDR with 13103 Peptides decoy=131 threshold=0.809416 total=13234 INFO[12:01:52] Converged to 1.00 % FDR with 17276 Ions decoy=172 threshold=0.759548 total=17448 INFO[12:01:54] Protein inference results decoy=2210 target=2337 INFO[12:01:54] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:01:56] Applying sequential FDR estimation ions=17369 peptides=13229 psms=61984 INFO[12:01:56] Converged to 0.07 % FDR with 61938 PSMs decoy=46 threshold=0.500266 total=61984 INFO[12:01:56] Converged to 0.30 % FDR with 13190 Peptides decoy=39 threshold=0.50242 total=13229 INFO[12:01:56] Converged to 0.23 % FDR with 17329 Ions decoy=40 threshold=0.50242 total=17369 INFO[12:01:57] Post processing identifications INFO[12:01:59] Assigning protein identifications to layers INFO[12:01:59] Processing protein inference INFO[12:02:01] Synchronizing PSMs and proteins INFO[12:02:01] Final report numbers after FDR filtering, and post-processing ions=17329 peptides=13190 proteins=1478 psms=61938 INFO[12:02:01] Saving INFO[12:02:02] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:02:02] Executing Filter v4.8.1 INFO[12:02:03] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:02:03] Processing peptide identification files INFO[12:02:03] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56\interact-S22049-Arjun-56.pep.xml INFO[12:02:09] 1+ Charge profile decoy=0 target=0 INFO[12:02:09] 2+ Charge profile decoy=336 target=46290 INFO[12:02:09] 3+ Charge profile decoy=98 target=16755 INFO[12:02:09] 4+ Charge profile decoy=9 target=1060 INFO[12:02:09] 5+ Charge profile decoy=1 target=61 INFO[12:02:09] 6+ Charge profile decoy=0 target=0 INFO[12:02:09] Database search results ions=17597 peptides=13481 psms=64610 INFO[12:02:09] Converged to 0.69 % FDR with 64166 PSMs decoy=444 threshold=0.50049 total=64610 INFO[12:02:09] Converged to 0.99 % FDR with 12884 Peptides decoy=128 threshold=0.845579 total=13012 INFO[12:02:09] Converged to 1.00 % FDR with 17027 Ions decoy=170 threshold=0.753799 total=17197 INFO[12:02:11] Protein inference results decoy=2210 target=2337 INFO[12:02:12] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:02:14] Applying sequential FDR estimation ions=17192 peptides=13078 psms=64133 INFO[12:02:14] Converged to 0.09 % FDR with 64077 PSMs decoy=56 threshold=0.50088 total=64133 INFO[12:02:14] Converged to 0.31 % FDR with 13037 Peptides decoy=41 threshold=0.502726 total=13078 INFO[12:02:14] Converged to 0.24 % FDR with 17150 Ions decoy=42 threshold=0.502726 total=17192 INFO[12:02:14] Post processing identifications INFO[12:02:17] Assigning protein identifications to layers INFO[12:02:17] Processing protein inference INFO[12:02:18] Synchronizing PSMs and proteins INFO[12:02:19] Final report numbers after FDR filtering, and post-processing ions=17150 peptides=13037 proteins=1468 psms=64077 INFO[12:02:19] Saving INFO[12:02:19] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:02:20] Executing Filter v4.8.1 INFO[12:02:20] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:02:20] Processing peptide identification files INFO[12:02:20] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57\interact-S22049-Arjun-57.pep.xml INFO[12:02:27] 1+ Charge profile decoy=0 target=0 INFO[12:02:27] 2+ Charge profile decoy=246 target=44205 INFO[12:02:27] 3+ Charge profile decoy=66 target=17976 INFO[12:02:27] 4+ Charge profile decoy=3 target=1348 INFO[12:02:27] 5+ Charge profile decoy=1 target=83 INFO[12:02:27] 6+ Charge profile decoy=0 target=0 INFO[12:02:27] Database search results ions=18687 peptides=14137 psms=63928 INFO[12:02:27] Converged to 0.50 % FDR with 63612 PSMs decoy=316 threshold=0.500156 total=63928 INFO[12:02:27] Converged to 1.00 % FDR with 13735 Peptides decoy=137 threshold=0.764941 total=13872 INFO[12:02:27] Converged to 1.00 % FDR with 18331 Ions decoy=183 threshold=0.654937 total=18514 INFO[12:02:29] Protein inference results decoy=2210 target=2337 INFO[12:02:29] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:02:31] Applying sequential FDR estimation ions=18381 peptides=13831 psms=63580 INFO[12:02:31] Converged to 0.06 % FDR with 63543 PSMs decoy=37 threshold=0.500607 total=63580 INFO[12:02:31] Converged to 0.22 % FDR with 13800 Peptides decoy=31 threshold=0.500607 total=13831 INFO[12:02:31] Converged to 0.17 % FDR with 18350 Ions decoy=31 threshold=0.500607 total=18381 INFO[12:02:32] Post processing identifications INFO[12:02:35] Assigning protein identifications to layers INFO[12:02:35] Processing protein inference INFO[12:02:36] Synchronizing PSMs and proteins INFO[12:02:37] Final report numbers after FDR filtering, and post-processing ions=18350 peptides=13800 proteins=1459 psms=63543 INFO[12:02:37] Saving INFO[12:02:38] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:02:38] Executing Filter v4.8.1 INFO[12:02:38] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:02:38] Processing peptide identification files INFO[12:02:38] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd\interact-S22049-Arjun-58-2nd.pep.xml INFO[12:02:45] 1+ Charge profile decoy=0 target=0 INFO[12:02:45] 2+ Charge profile decoy=301 target=40855 INFO[12:02:45] 3+ Charge profile decoy=84 target=16158 INFO[12:02:45] 4+ Charge profile decoy=5 target=1077 INFO[12:02:45] 5+ Charge profile decoy=2 target=60 INFO[12:02:45] 6+ Charge profile decoy=0 target=0 INFO[12:02:45] Database search results ions=18714 peptides=14140 psms=58542 INFO[12:02:45] Converged to 0.67 % FDR with 58150 PSMs decoy=392 threshold=0.500172 total=58542 INFO[12:02:45] Converged to 1.00 % FDR with 13642 Peptides decoy=136 threshold=0.745242 total=13778 INFO[12:02:45] Converged to 1.00 % FDR with 18231 Ions decoy=182 threshold=0.691055 total=18413 INFO[12:02:47] Protein inference results decoy=2210 target=2337 INFO[12:02:47] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:02:48] Applying sequential FDR estimation ions=18339 peptides=13769 psms=58113 INFO[12:02:48] Converged to 0.10 % FDR with 58057 PSMs decoy=56 threshold=0.500172 total=58113 INFO[12:02:48] Converged to 0.32 % FDR with 13725 Peptides decoy=44 threshold=0.50076 total=13769 INFO[12:02:48] Converged to 0.25 % FDR with 18294 Ions decoy=45 threshold=0.500172 total=18339 INFO[12:02:49] Post processing identifications INFO[12:02:51] Assigning protein identifications to layers INFO[12:02:51] Processing protein inference INFO[12:02:53] Synchronizing PSMs and proteins INFO[12:02:53] Final report numbers after FDR filtering, and post-processing ions=18294 peptides=13725 proteins=1490 psms=58057 INFO[12:02:53] Saving INFO[12:02:54] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:02:55] Executing Filter v4.8.1 INFO[12:02:55] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:02:55] Processing peptide identification files INFO[12:02:55] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd\interact-S22049-Arjun-59-2nd.pep.xml INFO[12:03:01] 1+ Charge profile decoy=0 target=0 INFO[12:03:01] 2+ Charge profile decoy=267 target=43471 INFO[12:03:01] 3+ Charge profile decoy=77 target=17607 INFO[12:03:01] 4+ Charge profile decoy=5 target=1363 INFO[12:03:01] 5+ Charge profile decoy=1 target=90 INFO[12:03:01] 6+ Charge profile decoy=0 target=0 INFO[12:03:01] Database search results ions=18933 peptides=14278 psms=62881 INFO[12:03:01] Converged to 0.56 % FDR with 62531 PSMs decoy=350 threshold=0.500229 total=62881 INFO[12:03:01] Converged to 0.99 % FDR with 13797 Peptides decoy=137 threshold=0.813131 total=13934 INFO[12:03:01] Converged to 1.00 % FDR with 18504 Ions decoy=185 threshold=0.716948 total=18689 INFO[12:03:03] Protein inference results decoy=2210 target=2337 INFO[12:03:03] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:03:05] Applying sequential FDR estimation ions=18602 peptides=13948 psms=62507 INFO[12:03:05] Converged to 0.07 % FDR with 62462 PSMs decoy=45 threshold=0.500229 total=62507 INFO[12:03:05] Converged to 0.24 % FDR with 13914 Peptides decoy=34 threshold=0.500679 total=13948 INFO[12:03:05] Converged to 0.19 % FDR with 18567 Ions decoy=35 threshold=0.500679 total=18602 INFO[12:03:06] Post processing identifications INFO[12:03:08] Assigning protein identifications to layers INFO[12:03:09] Processing protein inference INFO[12:03:10] Synchronizing PSMs and proteins INFO[12:03:10] Final report numbers after FDR filtering, and post-processing ions=18567 peptides=13914 proteins=1495 psms=62462 INFO[12:03:10] Saving INFO[12:03:11] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:03:12] Executing Filter v4.8.1 INFO[12:03:12] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:03:12] Processing peptide identification files INFO[12:03:12] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6\interact-S22049-Arjun-6.pep.xml INFO[12:03:17] 1+ Charge profile decoy=0 target=0 INFO[12:03:17] 2+ Charge profile decoy=338 target=49848 INFO[12:03:17] 3+ Charge profile decoy=54 target=9172 INFO[12:03:17] 4+ Charge profile decoy=1 target=114 INFO[12:03:17] 5+ Charge profile decoy=0 target=1 INFO[12:03:17] 6+ Charge profile decoy=0 target=0 INFO[12:03:17] Database search results ions=10564 peptides=8860 psms=59528 INFO[12:03:17] Converged to 0.66 % FDR with 59135 PSMs decoy=393 threshold=0.500764 total=59528 INFO[12:03:17] Converged to 1.00 % FDR with 8402 Peptides decoy=84 threshold=0.855793 total=8486 INFO[12:03:17] Converged to 1.00 % FDR with 10105 Ions decoy=101 threshold=0.833416 total=10206 INFO[12:03:19] Protein inference results decoy=2210 target=2337 INFO[12:03:20] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:03:21] Applying sequential FDR estimation ions=10242 peptides=8538 psms=59108 INFO[12:03:21] Converged to 0.08 % FDR with 59058 PSMs decoy=50 threshold=0.501653 total=59108 INFO[12:03:21] Converged to 0.40 % FDR with 8504 Peptides decoy=34 threshold=0.501653 total=8538 INFO[12:03:21] Converged to 0.34 % FDR with 10207 Ions decoy=35 threshold=0.501653 total=10242 INFO[12:03:22] Post processing identifications INFO[12:03:24] Assigning protein identifications to layers INFO[12:03:24] Processing protein inference INFO[12:03:26] Synchronizing PSMs and proteins INFO[12:03:26] Final report numbers after FDR filtering, and post-processing ions=10207 peptides=8504 proteins=1423 psms=59058 INFO[12:03:26] Saving INFO[12:03:27] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:03:27] Executing Filter v4.8.1 INFO[12:03:28] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:03:28] Processing peptide identification files INFO[12:03:28] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd\interact-S22049-Arjun-60-2nd.pep.xml INFO[12:03:33] 1+ Charge profile decoy=0 target=0 INFO[12:03:33] 2+ Charge profile decoy=318 target=43753 INFO[12:03:33] 3+ Charge profile decoy=67 target=13602 INFO[12:03:33] 4+ Charge profile decoy=3 target=561 INFO[12:03:33] 5+ Charge profile decoy=0 target=25 INFO[12:03:33] 6+ Charge profile decoy=0 target=0 INFO[12:03:33] Database search results ions=17541 peptides=13493 psms=58329 INFO[12:03:33] Converged to 0.67 % FDR with 57941 PSMs decoy=388 threshold=0.500035 total=58329 INFO[12:03:33] Converged to 1.00 % FDR with 13042 Peptides decoy=130 threshold=0.769593 total=13172 INFO[12:03:33] Converged to 1.00 % FDR with 17106 Ions decoy=171 threshold=0.70404 total=17277 INFO[12:03:35] Protein inference results decoy=2210 target=2337 INFO[12:03:35] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:03:37] Applying sequential FDR estimation ions=17203 peptides=13156 psms=57919 INFO[12:03:37] Converged to 0.10 % FDR with 57863 PSMs decoy=56 threshold=0.500035 total=57919 INFO[12:03:37] Converged to 0.32 % FDR with 13114 Peptides decoy=42 threshold=0.501254 total=13156 INFO[12:03:37] Converged to 0.25 % FDR with 17160 Ions decoy=43 threshold=0.501254 total=17203 INFO[12:03:37] Post processing identifications INFO[12:03:40] Assigning protein identifications to layers INFO[12:03:40] Processing protein inference INFO[12:03:41] Synchronizing PSMs and proteins INFO[12:03:42] Final report numbers after FDR filtering, and post-processing ions=17160 peptides=13114 proteins=1504 psms=57863 INFO[12:03:42] Saving INFO[12:03:42] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:03:43] Executing Filter v4.8.1 INFO[12:03:43] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:03:43] Processing peptide identification files INFO[12:03:43] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd\interact-S22049-Arjun-61-2nd.pep.xml INFO[12:03:49] 1+ Charge profile decoy=0 target=0 INFO[12:03:49] 2+ Charge profile decoy=247 target=39989 INFO[12:03:49] 3+ Charge profile decoy=55 target=14200 INFO[12:03:49] 4+ Charge profile decoy=3 target=827 INFO[12:03:49] 5+ Charge profile decoy=0 target=31 INFO[12:03:49] 6+ Charge profile decoy=0 target=0 INFO[12:03:49] Database search results ions=17789 peptides=13695 psms=55352 INFO[12:03:49] Converged to 0.55 % FDR with 55047 PSMs decoy=305 threshold=0.501167 total=55352 INFO[12:03:49] Converged to 1.00 % FDR with 13316 Peptides decoy=133 threshold=0.771555 total=13449 INFO[12:03:49] Converged to 1.00 % FDR with 17457 Ions decoy=174 threshold=0.690688 total=17631 INFO[12:03:51] Protein inference results decoy=2210 target=2337 INFO[12:03:51] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:03:53] Applying sequential FDR estimation ions=17499 peptides=13406 psms=55019 INFO[12:03:53] Converged to 0.08 % FDR with 54975 PSMs decoy=44 threshold=0.501167 total=55019 INFO[12:03:53] Converged to 0.25 % FDR with 13373 Peptides decoy=33 threshold=0.501167 total=13406 INFO[12:03:53] Converged to 0.19 % FDR with 17466 Ions decoy=33 threshold=0.501167 total=17499 INFO[12:03:53] Post processing identifications INFO[12:03:55] Assigning protein identifications to layers INFO[12:03:55] Processing protein inference INFO[12:03:57] Synchronizing PSMs and proteins INFO[12:03:57] Final report numbers after FDR filtering, and post-processing ions=17466 peptides=13373 proteins=1500 psms=54975 INFO[12:03:57] Saving INFO[12:03:58] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:03:58] Executing Filter v4.8.1 INFO[12:03:59] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:03:59] Processing peptide identification files INFO[12:03:59] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd\interact-S22049-Arjun-62-2nd.pep.xml INFO[12:04:05] 1+ Charge profile decoy=0 target=0 INFO[12:04:05] 2+ Charge profile decoy=324 target=46585 INFO[12:04:05] 3+ Charge profile decoy=85 target=17285 INFO[12:04:05] 4+ Charge profile decoy=3 target=1150 INFO[12:04:05] 5+ Charge profile decoy=0 target=79 INFO[12:04:05] 6+ Charge profile decoy=0 target=0 INFO[12:04:05] Database search results ions=18431 peptides=13753 psms=65511 INFO[12:04:05] Converged to 0.63 % FDR with 65099 PSMs decoy=412 threshold=0.500405 total=65511 INFO[12:04:05] Converged to 1.00 % FDR with 13229 Peptides decoy=132 threshold=0.808353 total=13361 INFO[12:04:05] Converged to 1.00 % FDR with 17920 Ions decoy=179 threshold=0.730807 total=18099 INFO[12:04:07] Protein inference results decoy=2210 target=2337 INFO[12:04:07] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:04:09] Applying sequential FDR estimation ions=18043 peptides=13370 psms=65062 INFO[12:04:09] Converged to 0.08 % FDR with 65009 PSMs decoy=53 threshold=0.500405 total=65062 INFO[12:04:09] Converged to 0.30 % FDR with 13330 Peptides decoy=40 threshold=0.500515 total=13370 INFO[12:04:09] Converged to 0.23 % FDR with 18002 Ions decoy=41 threshold=0.500515 total=18043 INFO[12:04:09] Post processing identifications INFO[12:04:12] Assigning protein identifications to layers INFO[12:04:12] Processing protein inference INFO[12:04:14] Synchronizing PSMs and proteins INFO[12:04:14] Final report numbers after FDR filtering, and post-processing ions=18002 peptides=13330 proteins=1471 psms=65009 INFO[12:04:14] Saving INFO[12:04:15] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:04:15] Executing Filter v4.8.1 INFO[12:04:16] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:04:16] Processing peptide identification files INFO[12:04:16] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd\interact-S22049-Arjun-63-2nd.pep.xml INFO[12:04:23] 1+ Charge profile decoy=0 target=0 INFO[12:04:23] 2+ Charge profile decoy=306 target=46117 INFO[12:04:23] 3+ Charge profile decoy=104 target=19021 INFO[12:04:23] 4+ Charge profile decoy=7 target=2340 INFO[12:04:23] 5+ Charge profile decoy=1 target=342 INFO[12:04:23] 6+ Charge profile decoy=0 target=24 INFO[12:04:23] Database search results ions=19963 peptides=14782 psms=68262 INFO[12:04:23] Converged to 0.62 % FDR with 67844 PSMs decoy=418 threshold=0.500016 total=68262 INFO[12:04:23] Converged to 1.00 % FDR with 14232 Peptides decoy=142 threshold=0.809413 total=14374 INFO[12:04:23] Converged to 1.00 % FDR with 19432 Ions decoy=194 threshold=0.741177 total=19626 INFO[12:04:25] Protein inference results decoy=2210 target=2337 INFO[12:04:25] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:04:27] Applying sequential FDR estimation ions=19561 peptides=14381 psms=67799 INFO[12:04:27] Converged to 0.06 % FDR with 67761 PSMs decoy=38 threshold=0.500481 total=67799 INFO[12:04:27] Converged to 0.23 % FDR with 14348 Peptides decoy=33 threshold=0.501779 total=14381 INFO[12:04:27] Converged to 0.17 % FDR with 19528 Ions decoy=33 threshold=0.501779 total=19561 INFO[12:04:27] Post processing identifications INFO[12:04:30] Assigning protein identifications to layers INFO[12:04:30] Processing protein inference INFO[12:04:32] Synchronizing PSMs and proteins INFO[12:04:33] Final report numbers after FDR filtering, and post-processing ions=19528 peptides=14348 proteins=1487 psms=67761 INFO[12:04:33] Saving INFO[12:04:33] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:04:34] Executing Filter v4.8.1 INFO[12:04:34] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:04:34] Processing peptide identification files INFO[12:04:34] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd\interact-S22049-Arjun-64-2nd.pep.xml INFO[12:04:40] 1+ Charge profile decoy=0 target=0 INFO[12:04:40] 2+ Charge profile decoy=365 target=45137 INFO[12:04:40] 3+ Charge profile decoy=83 target=15510 INFO[12:04:40] 4+ Charge profile decoy=3 target=792 INFO[12:04:40] 5+ Charge profile decoy=2 target=37 INFO[12:04:40] 6+ Charge profile decoy=0 target=0 INFO[12:04:40] Database search results ions=18076 peptides=13829 psms=61929 INFO[12:04:40] Converged to 0.74 % FDR with 61476 PSMs decoy=453 threshold=0.500629 total=61929 INFO[12:04:40] Converged to 1.00 % FDR with 13232 Peptides decoy=132 threshold=0.79986 total=13364 INFO[12:04:40] Converged to 0.99 % FDR with 17492 Ions decoy=174 threshold=0.740074 total=17666 INFO[12:04:42] Protein inference results decoy=2210 target=2337 INFO[12:04:42] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:04:44] Applying sequential FDR estimation ions=17657 peptides=13412 psms=61436 INFO[12:04:44] Converged to 0.09 % FDR with 61381 PSMs decoy=55 threshold=0.500629 total=61436 INFO[12:04:44] Converged to 0.30 % FDR with 13372 Peptides decoy=40 threshold=0.501317 total=13412 INFO[12:04:44] Converged to 0.23 % FDR with 17616 Ions decoy=41 threshold=0.501317 total=17657 INFO[12:04:45] Post processing identifications INFO[12:04:47] Assigning protein identifications to layers INFO[12:04:47] Processing protein inference INFO[12:04:49] Synchronizing PSMs and proteins INFO[12:04:49] Final report numbers after FDR filtering, and post-processing ions=17616 peptides=13372 proteins=1496 psms=61381 INFO[12:04:49] Saving INFO[12:04:50] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:04:50] Executing Filter v4.8.1 INFO[12:04:51] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:04:51] Processing peptide identification files INFO[12:04:51] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd\interact-S22049-Arjun-65-2nd.pep.xml INFO[12:04:57] 1+ Charge profile decoy=0 target=0 INFO[12:04:57] 2+ Charge profile decoy=303 target=45247 INFO[12:04:57] 3+ Charge profile decoy=88 target=18656 INFO[12:04:57] 4+ Charge profile decoy=6 target=1592 INFO[12:04:57] 5+ Charge profile decoy=2 target=120 INFO[12:04:57] 6+ Charge profile decoy=0 target=1 INFO[12:04:58] Database search results ions=19314 peptides=14369 psms=66015 INFO[12:04:58] Converged to 0.61 % FDR with 65616 PSMs decoy=399 threshold=0.500394 total=66015 INFO[12:04:58] Converged to 0.99 % FDR with 13872 Peptides decoy=138 threshold=0.790097 total=14010 INFO[12:04:58] Converged to 1.00 % FDR with 18851 Ions decoy=188 threshold=0.677975 total=19039 INFO[12:04:59] Protein inference results decoy=2210 target=2337 INFO[12:05:00] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:05:01] Applying sequential FDR estimation ions=18953 peptides=14010 psms=65597 INFO[12:05:01] Converged to 0.07 % FDR with 65549 PSMs decoy=48 threshold=0.500394 total=65597 INFO[12:05:01] Converged to 0.26 % FDR with 13974 Peptides decoy=36 threshold=0.50193 total=14010 INFO[12:05:01] Converged to 0.20 % FDR with 18915 Ions decoy=38 threshold=0.500452 total=18953 INFO[12:05:02] Post processing identifications INFO[12:05:04] Assigning protein identifications to layers INFO[12:05:04] Processing protein inference INFO[12:05:06] Synchronizing PSMs and proteins INFO[12:05:06] Final report numbers after FDR filtering, and post-processing ions=18915 peptides=13974 proteins=1478 psms=65549 INFO[12:05:06] Saving INFO[12:05:07] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:05:07] Executing Filter v4.8.1 INFO[12:05:08] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:05:08] Processing peptide identification files INFO[12:05:08] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd\interact-S22049-Arjun-66-2nd.pep.xml INFO[12:05:14] 1+ Charge profile decoy=0 target=0 INFO[12:05:14] 2+ Charge profile decoy=328 target=46384 INFO[12:05:14] 3+ Charge profile decoy=75 target=16652 INFO[12:05:14] 4+ Charge profile decoy=3 target=932 INFO[12:05:14] 5+ Charge profile decoy=1 target=50 INFO[12:05:14] 6+ Charge profile decoy=0 target=0 INFO[12:05:15] Database search results ions=18465 peptides=14113 psms=64425 INFO[12:05:15] Converged to 0.64 % FDR with 64018 PSMs decoy=407 threshold=0.500119 total=64425 INFO[12:05:15] Converged to 0.99 % FDR with 13568 Peptides decoy=135 threshold=0.81766 total=13703 INFO[12:05:15] Converged to 1.00 % FDR with 17935 Ions decoy=179 threshold=0.770947 total=18114 INFO[12:05:17] Protein inference results decoy=2210 target=2337 INFO[12:05:17] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:05:18] Applying sequential FDR estimation ions=18070 peptides=13719 psms=63971 INFO[12:05:18] Converged to 0.08 % FDR with 63922 PSMs decoy=49 threshold=0.500119 total=63971 INFO[12:05:18] Converged to 0.27 % FDR with 13682 Peptides decoy=37 threshold=0.501036 total=13719 INFO[12:05:18] Converged to 0.22 % FDR with 18031 Ions decoy=39 threshold=0.501036 total=18070 INFO[12:05:19] Post processing identifications INFO[12:05:21] Assigning protein identifications to layers INFO[12:05:21] Processing protein inference INFO[12:05:23] Synchronizing PSMs and proteins INFO[12:05:23] Final report numbers after FDR filtering, and post-processing ions=18031 peptides=13682 proteins=1486 psms=63922 INFO[12:05:23] Saving INFO[12:05:24] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:05:24] Executing Filter v4.8.1 INFO[12:05:25] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:05:25] Processing peptide identification files INFO[12:05:25] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67\interact-S22049-Arjun-67.pep.xml INFO[12:05:32] 1+ Charge profile decoy=0 target=0 INFO[12:05:32] 2+ Charge profile decoy=320 target=46462 INFO[12:05:32] 3+ Charge profile decoy=70 target=17483 INFO[12:05:32] 4+ Charge profile decoy=3 target=1162 INFO[12:05:32] 5+ Charge profile decoy=0 target=57 INFO[12:05:32] 6+ Charge profile decoy=0 target=0 INFO[12:05:32] Database search results ions=19004 peptides=14105 psms=65557 INFO[12:05:32] Converged to 0.60 % FDR with 65164 PSMs decoy=393 threshold=0.500119 total=65557 INFO[12:05:32] Converged to 0.99 % FDR with 13576 Peptides decoy=135 threshold=0.807221 total=13711 INFO[12:05:32] Converged to 1.00 % FDR with 18487 Ions decoy=184 threshold=0.73783 total=18671 INFO[12:05:34] Protein inference results decoy=2210 target=2337 INFO[12:05:34] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:05:36] Applying sequential FDR estimation ions=18627 peptides=13728 psms=65134 INFO[12:05:36] Converged to 0.07 % FDR with 65087 PSMs decoy=47 threshold=0.500145 total=65134 INFO[12:05:36] Converged to 0.27 % FDR with 13691 Peptides decoy=37 threshold=0.500145 total=13728 INFO[12:05:36] Converged to 0.20 % FDR with 18589 Ions decoy=38 threshold=0.500145 total=18627 INFO[12:05:36] Post processing identifications INFO[12:05:39] Assigning protein identifications to layers INFO[12:05:39] Processing protein inference INFO[12:05:41] Synchronizing PSMs and proteins INFO[12:05:41] Final report numbers after FDR filtering, and post-processing ions=18589 peptides=13691 proteins=1492 psms=65087 INFO[12:05:41] Saving INFO[12:05:42] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:05:42] Executing Filter v4.8.1 INFO[12:05:43] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:05:43] Processing peptide identification files INFO[12:05:43] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68\interact-S22049-Arjun-68.pep.xml INFO[12:05:49] 1+ Charge profile decoy=0 target=0 INFO[12:05:49] 2+ Charge profile decoy=313 target=46281 INFO[12:05:49] 3+ Charge profile decoy=98 target=18811 INFO[12:05:49] 4+ Charge profile decoy=5 target=1730 INFO[12:05:49] 5+ Charge profile decoy=2 target=159 INFO[12:05:49] 6+ Charge profile decoy=0 target=6 INFO[12:05:49] Database search results ions=19043 peptides=14298 psms=67405 INFO[12:05:49] Converged to 0.62 % FDR with 66987 PSMs decoy=418 threshold=0.500171 total=67405 INFO[12:05:49] Converged to 1.00 % FDR with 13759 Peptides decoy=137 threshold=0.768716 total=13896 INFO[12:05:49] Converged to 1.00 % FDR with 18524 Ions decoy=185 threshold=0.692844 total=18709 INFO[12:05:51] Protein inference results decoy=2210 target=2337 INFO[12:05:51] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:05:53] Applying sequential FDR estimation ions=18641 peptides=13898 psms=66948 INFO[12:05:53] Converged to 0.07 % FDR with 66903 PSMs decoy=45 threshold=0.500171 total=66948 INFO[12:05:53] Converged to 0.20 % FDR with 13870 Peptides decoy=28 threshold=0.500634 total=13898 INFO[12:05:53] Converged to 0.16 % FDR with 18612 Ions decoy=29 threshold=0.500634 total=18641 INFO[12:05:53] Post processing identifications INFO[12:05:56] Assigning protein identifications to layers INFO[12:05:56] Processing protein inference INFO[12:05:58] Synchronizing PSMs and proteins INFO[12:05:58] Final report numbers after FDR filtering, and post-processing ions=18612 peptides=13870 proteins=1495 psms=66903 INFO[12:05:58] Saving INFO[12:05:59] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:06:00] Executing Filter v4.8.1 INFO[12:06:00] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:06:00] Processing peptide identification files INFO[12:06:00] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69\interact-S22049-Arjun-69.pep.xml INFO[12:06:06] 1+ Charge profile decoy=0 target=0 INFO[12:06:06] 2+ Charge profile decoy=315 target=44579 INFO[12:06:06] 3+ Charge profile decoy=80 target=17498 INFO[12:06:06] 4+ Charge profile decoy=3 target=1195 INFO[12:06:06] 5+ Charge profile decoy=0 target=65 INFO[12:06:06] 6+ Charge profile decoy=0 target=0 INFO[12:06:06] Database search results ions=19045 peptides=14316 psms=63735 INFO[12:06:06] Converged to 0.63 % FDR with 63337 PSMs decoy=398 threshold=0.500784 total=63735 INFO[12:06:06] Converged to 0.99 % FDR with 13798 Peptides decoy=137 threshold=0.83713 total=13935 INFO[12:06:06] Converged to 1.00 % FDR with 18561 Ions decoy=185 threshold=0.750021 total=18746 INFO[12:06:08] Protein inference results decoy=2210 target=2337 INFO[12:06:08] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:06:10] Applying sequential FDR estimation ions=18689 peptides=13962 psms=63324 INFO[12:06:10] Converged to 0.10 % FDR with 63259 PSMs decoy=65 threshold=0.500784 total=63324 INFO[12:06:10] Converged to 0.34 % FDR with 13915 Peptides decoy=47 threshold=0.500784 total=13962 INFO[12:06:10] Converged to 0.27 % FDR with 18638 Ions decoy=51 threshold=0.500784 total=18689 INFO[12:06:10] Post processing identifications INFO[12:06:13] Assigning protein identifications to layers INFO[12:06:13] Processing protein inference INFO[12:06:15] Synchronizing PSMs and proteins INFO[12:06:15] Final report numbers after FDR filtering, and post-processing ions=18638 peptides=13915 proteins=1488 psms=63259 INFO[12:06:15] Saving INFO[12:06:16] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:06:17] Executing Filter v4.8.1 INFO[12:06:17] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:06:17] Processing peptide identification files INFO[12:06:17] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7\interact-S22049-Arjun-7.pep.xml INFO[12:06:23] 1+ Charge profile decoy=0 target=0 INFO[12:06:23] 2+ Charge profile decoy=280 target=45862 INFO[12:06:23] 3+ Charge profile decoy=92 target=19209 INFO[12:06:23] 4+ Charge profile decoy=6 target=1515 INFO[12:06:23] 5+ Charge profile decoy=2 target=115 INFO[12:06:23] 6+ Charge profile decoy=0 target=0 INFO[12:06:23] Database search results ions=18035 peptides=13660 psms=67081 INFO[12:06:24] Converged to 0.57 % FDR with 66701 PSMs decoy=380 threshold=0.50014 total=67081 INFO[12:06:24] Converged to 1.00 % FDR with 13161 Peptides decoy=131 threshold=0.794875 total=13292 INFO[12:06:24] Converged to 1.00 % FDR with 17569 Ions decoy=175 threshold=0.72272 total=17744 INFO[12:06:25] Protein inference results decoy=2210 target=2337 INFO[12:06:26] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:06:27] Applying sequential FDR estimation ions=17672 peptides=13299 psms=66656 INFO[12:06:27] Converged to 0.08 % FDR with 66606 PSMs decoy=50 threshold=0.50014 total=66656 INFO[12:06:27] Converged to 0.27 % FDR with 13263 Peptides decoy=36 threshold=0.50014 total=13299 INFO[12:06:27] Converged to 0.21 % FDR with 17635 Ions decoy=37 threshold=0.50014 total=17672 INFO[12:06:28] Post processing identifications INFO[12:06:31] Assigning protein identifications to layers INFO[12:06:31] Processing protein inference INFO[12:06:32] Synchronizing PSMs and proteins INFO[12:06:33] Final report numbers after FDR filtering, and post-processing ions=17635 peptides=13263 proteins=1460 psms=66606 INFO[12:06:33] Saving INFO[12:06:34] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:06:34] Executing Filter v4.8.1 INFO[12:06:35] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:06:35] Processing peptide identification files INFO[12:06:35] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70\interact-S22049-Arjun-70.pep.xml INFO[12:06:41] 1+ Charge profile decoy=0 target=0 INFO[12:06:41] 2+ Charge profile decoy=324 target=45592 INFO[12:06:41] 3+ Charge profile decoy=90 target=17245 INFO[12:06:41] 4+ Charge profile decoy=4 target=1190 INFO[12:06:41] 5+ Charge profile decoy=0 target=65 INFO[12:06:41] 6+ Charge profile decoy=0 target=0 INFO[12:06:41] Database search results ions=18594 peptides=14061 psms=64510 INFO[12:06:41] Converged to 0.65 % FDR with 64092 PSMs decoy=418 threshold=0.500531 total=64510 INFO[12:06:41] Converged to 0.99 % FDR with 13481 Peptides decoy=134 threshold=0.832134 total=13615 INFO[12:06:41] Converged to 1.00 % FDR with 18042 Ions decoy=180 threshold=0.764227 total=18222 INFO[12:06:43] Protein inference results decoy=2210 target=2337 INFO[12:06:43] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:06:45] Applying sequential FDR estimation ions=18199 peptides=13666 psms=64052 INFO[12:06:45] Converged to 0.08 % FDR with 64000 PSMs decoy=52 threshold=0.502566 total=64052 INFO[12:06:45] Converged to 0.28 % FDR with 13628 Peptides decoy=38 threshold=0.506983 total=13666 INFO[12:06:45] Converged to 0.21 % FDR with 18160 Ions decoy=39 threshold=0.506983 total=18199 INFO[12:06:45] Post processing identifications INFO[12:06:48] Assigning protein identifications to layers INFO[12:06:48] Processing protein inference INFO[12:06:49] Synchronizing PSMs and proteins INFO[12:06:50] Final report numbers after FDR filtering, and post-processing ions=18160 peptides=13628 proteins=1482 psms=64000 INFO[12:06:50] Saving INFO[12:06:51] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:06:51] Executing Filter v4.8.1 INFO[12:06:51] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:06:51] Processing peptide identification files INFO[12:06:51] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71\interact-S22049-Arjun-71.pep.xml INFO[12:06:58] 1+ Charge profile decoy=0 target=0 INFO[12:06:58] 2+ Charge profile decoy=349 target=46388 INFO[12:06:58] 3+ Charge profile decoy=104 target=17831 INFO[12:06:58] 4+ Charge profile decoy=7 target=1291 INFO[12:06:58] 5+ Charge profile decoy=1 target=73 INFO[12:06:58] 6+ Charge profile decoy=0 target=0 INFO[12:06:58] Database search results ions=18557 peptides=13838 psms=66044 INFO[12:06:58] Converged to 0.70 % FDR with 65583 PSMs decoy=461 threshold=0.500076 total=66044 INFO[12:06:58] Converged to 0.99 % FDR with 13196 Peptides decoy=131 threshold=0.840134 total=13327 INFO[12:06:58] Converged to 1.00 % FDR with 17942 Ions decoy=179 threshold=0.743081 total=18121 INFO[12:07:00] Protein inference results decoy=2210 target=2337 INFO[12:07:00] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:07:02] Applying sequential FDR estimation ions=18096 peptides=13379 psms=65519 INFO[12:07:02] Converged to 0.07 % FDR with 65470 PSMs decoy=49 threshold=0.500076 total=65519 INFO[12:07:02] Converged to 0.30 % FDR with 13339 Peptides decoy=40 threshold=0.50024 total=13379 INFO[12:07:02] Converged to 0.23 % FDR with 18055 Ions decoy=41 threshold=0.50024 total=18096 INFO[12:07:02] Post processing identifications INFO[12:07:05] Assigning protein identifications to layers INFO[12:07:05] Processing protein inference INFO[12:07:06] Synchronizing PSMs and proteins INFO[12:07:07] Final report numbers after FDR filtering, and post-processing ions=18055 peptides=13339 proteins=1473 psms=65470 INFO[12:07:07] Saving INFO[12:07:07] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:07:08] Executing Filter v4.8.1 INFO[12:07:08] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:07:08] Processing peptide identification files INFO[12:07:08] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72\interact-S22049-Arjun-72.pep.xml INFO[12:07:14] 1+ Charge profile decoy=0 target=0 INFO[12:07:14] 2+ Charge profile decoy=322 target=45353 INFO[12:07:14] 3+ Charge profile decoy=90 target=18227 INFO[12:07:14] 4+ Charge profile decoy=5 target=1587 INFO[12:07:14] 5+ Charge profile decoy=1 target=124 INFO[12:07:14] 6+ Charge profile decoy=0 target=1 INFO[12:07:14] Database search results ions=19023 peptides=14303 psms=65710 INFO[12:07:14] Converged to 0.64 % FDR with 65292 PSMs decoy=418 threshold=0.501361 total=65710 INFO[12:07:14] Converged to 0.99 % FDR with 13778 Peptides decoy=137 threshold=0.774563 total=13915 INFO[12:07:14] Converged to 1.00 % FDR with 18507 Ions decoy=185 threshold=0.706233 total=18692 INFO[12:07:16] Protein inference results decoy=2210 target=2337 INFO[12:07:16] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:07:19] Applying sequential FDR estimation ions=18613 peptides=13897 psms=65237 INFO[12:07:19] Converged to 0.06 % FDR with 65199 PSMs decoy=38 threshold=0.501361 total=65237 INFO[12:07:19] Converged to 0.21 % FDR with 13868 Peptides decoy=29 threshold=0.505015 total=13897 INFO[12:07:19] Converged to 0.16 % FDR with 18583 Ions decoy=30 threshold=0.505015 total=18613 INFO[12:07:19] Post processing identifications INFO[12:07:22] Assigning protein identifications to layers INFO[12:07:22] Processing protein inference INFO[12:07:23] Synchronizing PSMs and proteins INFO[12:07:24] Final report numbers after FDR filtering, and post-processing ions=18583 peptides=13868 proteins=1477 psms=65199 INFO[12:07:24] Saving INFO[12:07:24] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:07:25] Executing Filter v4.8.1 INFO[12:07:25] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:07:25] Processing peptide identification files INFO[12:07:25] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73\interact-S22049-Arjun-73.pep.xml INFO[12:07:30] 1+ Charge profile decoy=0 target=0 INFO[12:07:30] 2+ Charge profile decoy=217 target=37263 INFO[12:07:30] 3+ Charge profile decoy=64 target=14453 INFO[12:07:30] 4+ Charge profile decoy=10 target=1758 INFO[12:07:30] 5+ Charge profile decoy=0 target=226 INFO[12:07:30] 6+ Charge profile decoy=0 target=7 INFO[12:07:30] Database search results ions=18078 peptides=14283 psms=53998 INFO[12:07:30] Converged to 0.54 % FDR with 53707 PSMs decoy=291 threshold=0.500769 total=53998 INFO[12:07:31] Converged to 1.00 % FDR with 13905 Peptides decoy=139 threshold=0.654091 total=14044 INFO[12:07:31] Converged to 1.00 % FDR with 17708 Ions decoy=177 threshold=0.617281 total=17885 INFO[12:07:32] Protein inference results decoy=2210 target=2337 INFO[12:07:32] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:07:34] Applying sequential FDR estimation ions=17787 peptides=13993 psms=53671 INFO[12:07:34] Converged to 0.07 % FDR with 53635 PSMs decoy=36 threshold=0.500888 total=53671 INFO[12:07:34] Converged to 0.21 % FDR with 13963 Peptides decoy=30 threshold=0.50261 total=13993 INFO[12:07:34] Converged to 0.17 % FDR with 17757 Ions decoy=30 threshold=0.50261 total=17787 INFO[12:07:34] Post processing identifications INFO[12:07:37] Assigning protein identifications to layers INFO[12:07:37] Processing protein inference INFO[12:07:39] Synchronizing PSMs and proteins INFO[12:07:39] Final report numbers after FDR filtering, and post-processing ions=17757 peptides=13963 proteins=1479 psms=53635 INFO[12:07:39] Saving INFO[12:07:40] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:07:40] Executing Filter v4.8.1 INFO[12:07:41] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:07:41] Processing peptide identification files INFO[12:07:41] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74\interact-S22049-Arjun-74.pep.xml INFO[12:07:46] 1+ Charge profile decoy=0 target=0 INFO[12:07:46] 2+ Charge profile decoy=220 target=37717 INFO[12:07:46] 3+ Charge profile decoy=59 target=12867 INFO[12:07:46] 4+ Charge profile decoy=3 target=955 INFO[12:07:46] 5+ Charge profile decoy=2 target=64 INFO[12:07:46] 6+ Charge profile decoy=0 target=0 INFO[12:07:46] Database search results ions=17180 peptides=13686 psms=51887 INFO[12:07:46] Converged to 0.55 % FDR with 51603 PSMs decoy=284 threshold=0.500077 total=51887 INFO[12:07:46] Converged to 1.00 % FDR with 13339 Peptides decoy=133 threshold=0.744087 total=13472 INFO[12:07:46] Converged to 1.00 % FDR with 16865 Ions decoy=168 threshold=0.657889 total=17033 INFO[12:07:48] Protein inference results decoy=2210 target=2337 INFO[12:07:48] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:07:49] Applying sequential FDR estimation ions=16923 peptides=13430 psms=51586 INFO[12:07:49] Converged to 0.08 % FDR with 51546 PSMs decoy=40 threshold=0.500077 total=51586 INFO[12:07:49] Converged to 0.23 % FDR with 13399 Peptides decoy=31 threshold=0.504238 total=13430 INFO[12:07:49] Converged to 0.18 % FDR with 16892 Ions decoy=31 threshold=0.501109 total=16923 INFO[12:07:50] Post processing identifications INFO[12:07:52] Assigning protein identifications to layers INFO[12:07:52] Processing protein inference INFO[12:07:53] Synchronizing PSMs and proteins INFO[12:07:54] Final report numbers after FDR filtering, and post-processing ions=16892 peptides=13399 proteins=1476 psms=51546 INFO[12:07:54] Saving INFO[12:07:54] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:07:55] Executing Filter v4.8.1 INFO[12:07:55] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:07:55] Processing peptide identification files INFO[12:07:55] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75\interact-S22049-Arjun-75.pep.xml INFO[12:08:00] 1+ Charge profile decoy=0 target=0 INFO[12:08:00] 2+ Charge profile decoy=216 target=37590 INFO[12:08:00] 3+ Charge profile decoy=66 target=14226 INFO[12:08:00] 4+ Charge profile decoy=6 target=1329 INFO[12:08:00] 5+ Charge profile decoy=1 target=134 INFO[12:08:00] 6+ Charge profile decoy=0 target=0 INFO[12:08:01] Database search results ions=17440 peptides=13757 psms=53568 INFO[12:08:01] Converged to 0.54 % FDR with 53279 PSMs decoy=289 threshold=0.501164 total=53568 INFO[12:08:01] Converged to 0.99 % FDR with 13391 Peptides decoy=133 threshold=0.709797 total=13524 INFO[12:08:01] Converged to 0.99 % FDR with 17091 Ions decoy=170 threshold=0.649754 total=17261 INFO[12:08:02] Protein inference results decoy=2210 target=2337 INFO[12:08:03] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:08:04] Applying sequential FDR estimation ions=17167 peptides=13485 psms=53252 INFO[12:08:04] Converged to 0.08 % FDR with 53211 PSMs decoy=41 threshold=0.501164 total=53252 INFO[12:08:04] Converged to 0.23 % FDR with 13454 Peptides decoy=31 threshold=0.501164 total=13485 INFO[12:08:04] Converged to 0.18 % FDR with 17136 Ions decoy=31 threshold=0.501164 total=17167 INFO[12:08:04] Post processing identifications INFO[12:08:06] Assigning protein identifications to layers INFO[12:08:07] Processing protein inference INFO[12:08:08] Synchronizing PSMs and proteins INFO[12:08:08] Final report numbers after FDR filtering, and post-processing ions=17136 peptides=13454 proteins=1477 psms=53211 INFO[12:08:08] Saving INFO[12:08:09] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:08:09] Executing Filter v4.8.1 INFO[12:08:10] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:08:10] Processing peptide identification files INFO[12:08:10] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76\interact-S22049-Arjun-76.pep.xml INFO[12:08:15] 1+ Charge profile decoy=0 target=0 INFO[12:08:15] 2+ Charge profile decoy=230 target=38392 INFO[12:08:15] 3+ Charge profile decoy=63 target=13847 INFO[12:08:15] 4+ Charge profile decoy=4 target=998 INFO[12:08:15] 5+ Charge profile decoy=1 target=60 INFO[12:08:15] 6+ Charge profile decoy=0 target=0 INFO[12:08:15] Database search results ions=16867 peptides=13296 psms=53595 INFO[12:08:16] Converged to 0.56 % FDR with 53297 PSMs decoy=298 threshold=0.500383 total=53595 INFO[12:08:16] Converged to 1.00 % FDR with 12909 Peptides decoy=129 threshold=0.757716 total=13038 INFO[12:08:16] Converged to 1.00 % FDR with 16503 Ions decoy=165 threshold=0.673101 total=16668 INFO[12:08:18] Protein inference results decoy=2210 target=2337 INFO[12:08:18] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:08:20] Applying sequential FDR estimation ions=16575 peptides=13005 psms=53254 INFO[12:08:20] Converged to 0.07 % FDR with 53216 PSMs decoy=38 threshold=0.500383 total=53254 INFO[12:08:20] Converged to 0.24 % FDR with 12974 Peptides decoy=31 threshold=0.510217 total=13005 INFO[12:08:20] Converged to 0.19 % FDR with 16544 Ions decoy=31 threshold=0.500874 total=16575 INFO[12:08:20] Post processing identifications INFO[12:08:23] Assigning protein identifications to layers INFO[12:08:23] Processing protein inference INFO[12:08:25] Synchronizing PSMs and proteins INFO[12:08:25] Final report numbers after FDR filtering, and post-processing ions=16544 peptides=12974 proteins=1473 psms=53216 INFO[12:08:25] Saving INFO[12:08:26] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:08:27] Executing Filter v4.8.1 INFO[12:08:27] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:08:27] Processing peptide identification files INFO[12:08:27] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77\interact-S22049-Arjun-77.pep.xml INFO[12:08:33] 1+ Charge profile decoy=0 target=0 INFO[12:08:33] 2+ Charge profile decoy=266 target=38726 INFO[12:08:33] 3+ Charge profile decoy=91 target=14141 INFO[12:08:33] 4+ Charge profile decoy=6 target=1256 INFO[12:08:33] 5+ Charge profile decoy=2 target=139 INFO[12:08:33] 6+ Charge profile decoy=0 target=3 INFO[12:08:33] Database search results ions=17824 peptides=14042 psms=54630 INFO[12:08:33] Converged to 0.67 % FDR with 54265 PSMs decoy=365 threshold=0.500052 total=54630 INFO[12:08:33] Converged to 0.99 % FDR with 13577 Peptides decoy=135 threshold=0.684017 total=13712 INFO[12:08:33] Converged to 1.00 % FDR with 17379 Ions decoy=173 threshold=0.603408 total=17552 INFO[12:08:34] Protein inference results decoy=2210 target=2337 INFO[12:08:35] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:08:36] Applying sequential FDR estimation ions=17480 peptides=13699 psms=54224 INFO[12:08:36] Converged to 0.09 % FDR with 54174 PSMs decoy=50 threshold=0.500361 total=54224 INFO[12:08:36] Converged to 0.28 % FDR with 13661 Peptides decoy=38 threshold=0.501305 total=13699 INFO[12:08:36] Converged to 0.22 % FDR with 17441 Ions decoy=39 threshold=0.501305 total=17480 INFO[12:08:36] Post processing identifications INFO[12:08:39] Assigning protein identifications to layers INFO[12:08:39] Processing protein inference INFO[12:08:40] Synchronizing PSMs and proteins INFO[12:08:40] Final report numbers after FDR filtering, and post-processing ions=17441 peptides=13661 proteins=1502 psms=54174 INFO[12:08:40] Saving INFO[12:08:41] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:08:41] Executing Filter v4.8.1 INFO[12:08:42] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:08:42] Processing peptide identification files INFO[12:08:42] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78\interact-S22049-Arjun-78.pep.xml INFO[12:08:47] 1+ Charge profile decoy=0 target=0 INFO[12:08:47] 2+ Charge profile decoy=236 target=38040 INFO[12:08:47] 3+ Charge profile decoy=60 target=13864 INFO[12:08:47] 4+ Charge profile decoy=4 target=1182 INFO[12:08:47] 5+ Charge profile decoy=2 target=102 INFO[12:08:47] 6+ Charge profile decoy=0 target=0 INFO[12:08:47] Database search results ions=17774 peptides=13982 psms=53490 INFO[12:08:47] Converged to 0.57 % FDR with 53188 PSMs decoy=302 threshold=0.500459 total=53490 INFO[12:08:47] Converged to 1.00 % FDR with 13650 Peptides decoy=136 threshold=0.751106 total=13786 INFO[12:08:47] Converged to 1.00 % FDR with 17471 Ions decoy=174 threshold=0.676638 total=17645 INFO[12:08:49] Protein inference results decoy=2210 target=2337 INFO[12:08:49] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:08:51] Applying sequential FDR estimation ions=17500 peptides=13708 psms=53168 INFO[12:08:51] Converged to 0.08 % FDR with 53124 PSMs decoy=44 threshold=0.500459 total=53168 INFO[12:08:51] Converged to 0.22 % FDR with 13678 Peptides decoy=30 threshold=0.502251 total=13708 INFO[12:08:51] Converged to 0.17 % FDR with 17470 Ions decoy=30 threshold=0.502251 total=17500 INFO[12:08:51] Post processing identifications INFO[12:08:53] Assigning protein identifications to layers INFO[12:08:53] Processing protein inference INFO[12:08:55] Synchronizing PSMs and proteins INFO[12:08:55] Final report numbers after FDR filtering, and post-processing ions=17470 peptides=13678 proteins=1486 psms=53124 INFO[12:08:55] Saving INFO[12:08:55] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:08:56] Executing Filter v4.8.1 INFO[12:08:57] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:08:57] Processing peptide identification files INFO[12:08:57] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79\interact-S22049-Arjun-79.pep.xml INFO[12:09:02] 1+ Charge profile decoy=0 target=0 INFO[12:09:02] 2+ Charge profile decoy=257 target=40721 INFO[12:09:02] 3+ Charge profile decoy=63 target=13565 INFO[12:09:02] 4+ Charge profile decoy=6 target=758 INFO[12:09:02] 5+ Charge profile decoy=1 target=29 INFO[12:09:02] 6+ Charge profile decoy=0 target=0 INFO[12:09:02] Database search results ions=16981 peptides=13298 psms=55400 INFO[12:09:02] Converged to 0.59 % FDR with 55073 PSMs decoy=327 threshold=0.500144 total=55400 INFO[12:09:02] Converged to 1.00 % FDR with 12909 Peptides decoy=129 threshold=0.728308 total=13038 INFO[12:09:02] Converged to 1.00 % FDR with 16612 Ions decoy=166 threshold=0.656519 total=16778 INFO[12:09:04] Protein inference results decoy=2210 target=2337 INFO[12:09:04] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:09:06] Applying sequential FDR estimation ions=16684 peptides=13004 psms=55046 INFO[12:09:06] Converged to 0.09 % FDR with 54998 PSMs decoy=48 threshold=0.500399 total=55046 INFO[12:09:06] Converged to 0.27 % FDR with 12969 Peptides decoy=35 threshold=0.500463 total=13004 INFO[12:09:06] Converged to 0.22 % FDR with 16648 Ions decoy=36 threshold=0.500463 total=16684 INFO[12:09:06] Post processing identifications INFO[12:09:08] Assigning protein identifications to layers INFO[12:09:08] Processing protein inference INFO[12:09:10] Synchronizing PSMs and proteins INFO[12:09:10] Final report numbers after FDR filtering, and post-processing ions=16648 peptides=12969 proteins=1480 psms=54998 INFO[12:09:10] Saving INFO[12:09:11] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:09:11] Executing Filter v4.8.1 INFO[12:09:12] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:09:12] Processing peptide identification files INFO[12:09:12] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8\interact-S22049-Arjun-8.pep.xml INFO[12:09:17] 1+ Charge profile decoy=0 target=0 INFO[12:09:17] 2+ Charge profile decoy=328 target=45160 INFO[12:09:17] 3+ Charge profile decoy=93 target=17128 INFO[12:09:17] 4+ Charge profile decoy=5 target=1032 INFO[12:09:17] 5+ Charge profile decoy=1 target=64 INFO[12:09:17] 6+ Charge profile decoy=0 target=0 INFO[12:09:18] Database search results ions=17303 peptides=13079 psms=63811 INFO[12:09:18] Converged to 0.67 % FDR with 63384 PSMs decoy=427 threshold=0.500153 total=63811 INFO[12:09:18] Converged to 0.99 % FDR with 12493 Peptides decoy=124 threshold=0.838085 total=12617 INFO[12:09:18] Converged to 1.00 % FDR with 16744 Ions decoy=167 threshold=0.770357 total=16911 INFO[12:09:20] Protein inference results decoy=2210 target=2337 INFO[12:09:20] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:09:22] Applying sequential FDR estimation ions=16896 peptides=12674 psms=63337 INFO[12:09:22] Converged to 0.09 % FDR with 63283 PSMs decoy=54 threshold=0.500622 total=63337 INFO[12:09:22] Converged to 0.33 % FDR with 12632 Peptides decoy=42 threshold=0.500711 total=12674 INFO[12:09:22] Converged to 0.25 % FDR with 16854 Ions decoy=42 threshold=0.500711 total=16896 INFO[12:09:22] Post processing identifications INFO[12:09:25] Assigning protein identifications to layers INFO[12:09:25] Processing protein inference INFO[12:09:26] Synchronizing PSMs and proteins INFO[12:09:27] Final report numbers after FDR filtering, and post-processing ions=16854 peptides=12632 proteins=1466 psms=63283 INFO[12:09:27] Saving INFO[12:09:27] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:09:28] Executing Filter v4.8.1 INFO[12:09:28] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:09:28] Processing peptide identification files INFO[12:09:28] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80\interact-S22049-Arjun-80.pep.xml INFO[12:09:33] 1+ Charge profile decoy=0 target=0 INFO[12:09:33] 2+ Charge profile decoy=210 target=34789 INFO[12:09:33] 3+ Charge profile decoy=44 target=11787 INFO[12:09:33] 4+ Charge profile decoy=5 target=714 INFO[12:09:33] 5+ Charge profile decoy=1 target=26 INFO[12:09:33] 6+ Charge profile decoy=0 target=0 INFO[12:09:33] Database search results ions=16181 peptides=12827 psms=47576 INFO[12:09:33] Converged to 0.55 % FDR with 47316 PSMs decoy=260 threshold=0.500502 total=47576 INFO[12:09:33] Converged to 1.00 % FDR with 12550 Peptides decoy=125 threshold=0.697787 total=12675 INFO[12:09:33] Converged to 1.00 % FDR with 15921 Ions decoy=159 threshold=0.617067 total=16080 INFO[12:09:34] Protein inference results decoy=2210 target=2337 INFO[12:09:35] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:09:36] Applying sequential FDR estimation ions=15959 peptides=12605 psms=47307 INFO[12:09:36] Converged to 0.09 % FDR with 47264 PSMs decoy=43 threshold=0.501474 total=47307 INFO[12:09:36] Converged to 0.25 % FDR with 12574 Peptides decoy=31 threshold=0.505465 total=12605 INFO[12:09:36] Converged to 0.20 % FDR with 15927 Ions decoy=32 threshold=0.505465 total=15959 INFO[12:09:36] Post processing identifications INFO[12:09:38] Assigning protein identifications to layers INFO[12:09:38] Processing protein inference INFO[12:09:39] Synchronizing PSMs and proteins INFO[12:09:40] Final report numbers after FDR filtering, and post-processing ions=15927 peptides=12574 proteins=1465 psms=47264 INFO[12:09:40] Saving INFO[12:09:41] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:09:41] Executing Filter v4.8.1 INFO[12:09:42] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:09:42] Processing peptide identification files INFO[12:09:42] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81\interact-S22049-Arjun-81.pep.xml INFO[12:09:47] 1+ Charge profile decoy=0 target=0 INFO[12:09:47] 2+ Charge profile decoy=308 target=41006 INFO[12:09:47] 3+ Charge profile decoy=75 target=13297 INFO[12:09:47] 4+ Charge profile decoy=2 target=669 INFO[12:09:47] 5+ Charge profile decoy=0 target=22 INFO[12:09:47] 6+ Charge profile decoy=0 target=1 INFO[12:09:48] Database search results ions=17806 peptides=14169 psms=55380 INFO[12:09:48] Converged to 0.70 % FDR with 54995 PSMs decoy=385 threshold=0.50029 total=55380 INFO[12:09:48] Converged to 0.99 % FDR with 13679 Peptides decoy=136 threshold=0.771933 total=13815 INFO[12:09:48] Converged to 1.00 % FDR with 17327 Ions decoy=173 threshold=0.720567 total=17500 INFO[12:09:49] Protein inference results decoy=2210 target=2337 INFO[12:09:49] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:09:51] Applying sequential FDR estimation ions=17454 peptides=13820 psms=54962 INFO[12:09:51] Converged to 0.08 % FDR with 54919 PSMs decoy=43 threshold=0.502232 total=54962 INFO[12:09:51] Converged to 0.24 % FDR with 13787 Peptides decoy=33 threshold=0.502232 total=13820 INFO[12:09:51] Converged to 0.20 % FDR with 17420 Ions decoy=34 threshold=0.502232 total=17454 INFO[12:09:51] Post processing identifications INFO[12:09:53] Assigning protein identifications to layers INFO[12:09:54] Processing protein inference INFO[12:09:55] Synchronizing PSMs and proteins INFO[12:09:55] Final report numbers after FDR filtering, and post-processing ions=17420 peptides=13787 proteins=1522 psms=54919 INFO[12:09:55] Saving INFO[12:09:56] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:09:57] Executing Filter v4.8.1 INFO[12:09:57] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:09:57] Processing peptide identification files INFO[12:09:57] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82\interact-S22049-Arjun-82.pep.xml INFO[12:10:03] 1+ Charge profile decoy=0 target=0 INFO[12:10:03] 2+ Charge profile decoy=238 target=39356 INFO[12:10:03] 3+ Charge profile decoy=60 target=14813 INFO[12:10:03] 4+ Charge profile decoy=5 target=1249 INFO[12:10:03] 5+ Charge profile decoy=2 target=117 INFO[12:10:03] 6+ Charge profile decoy=0 target=1 INFO[12:10:03] Database search results ions=18256 peptides=14230 psms=55841 INFO[12:10:03] Converged to 0.55 % FDR with 55536 PSMs decoy=305 threshold=0.500171 total=55841 INFO[12:10:03] Converged to 1.00 % FDR with 13849 Peptides decoy=138 threshold=0.769349 total=13987 INFO[12:10:03] Converged to 1.00 % FDR with 17911 Ions decoy=179 threshold=0.661528 total=18090 INFO[12:10:05] Protein inference results decoy=2210 target=2337 INFO[12:10:05] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:10:06] Applying sequential FDR estimation ions=17973 peptides=13949 psms=55511 INFO[12:10:06] Converged to 0.09 % FDR with 55460 PSMs decoy=51 threshold=0.500171 total=55511 INFO[12:10:06] Converged to 0.29 % FDR with 13909 Peptides decoy=40 threshold=0.500171 total=13949 INFO[12:10:06] Converged to 0.22 % FDR with 17933 Ions decoy=40 threshold=0.500171 total=17973 INFO[12:10:07] Post processing identifications INFO[12:10:09] Assigning protein identifications to layers INFO[12:10:09] Processing protein inference INFO[12:10:10] Synchronizing PSMs and proteins INFO[12:10:11] Final report numbers after FDR filtering, and post-processing ions=17933 peptides=13909 proteins=1515 psms=55460 INFO[12:10:11] Saving INFO[12:10:11] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:10:12] Executing Filter v4.8.1 INFO[12:10:12] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:10:12] Processing peptide identification files INFO[12:10:12] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83\interact-S22049-Arjun-83.pep.xml INFO[12:10:18] 1+ Charge profile decoy=0 target=0 INFO[12:10:18] 2+ Charge profile decoy=248 target=39099 INFO[12:10:18] 3+ Charge profile decoy=70 target=15097 INFO[12:10:18] 4+ Charge profile decoy=4 target=1159 INFO[12:10:18] 5+ Charge profile decoy=1 target=72 INFO[12:10:18] 6+ Charge profile decoy=0 target=0 INFO[12:10:18] Database search results ions=17877 peptides=13925 psms=55750 INFO[12:10:18] Converged to 0.58 % FDR with 55427 PSMs decoy=323 threshold=0.500296 total=55750 INFO[12:10:18] Converged to 1.00 % FDR with 13503 Peptides decoy=135 threshold=0.766805 total=13638 INFO[12:10:18] Converged to 0.99 % FDR with 17489 Ions decoy=174 threshold=0.690867 total=17663 INFO[12:10:19] Protein inference results decoy=2210 target=2337 INFO[12:10:20] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:10:21] Applying sequential FDR estimation ions=17557 peptides=13609 psms=55384 INFO[12:10:21] Converged to 0.08 % FDR with 55339 PSMs decoy=45 threshold=0.500296 total=55384 INFO[12:10:21] Converged to 0.23 % FDR with 13578 Peptides decoy=31 threshold=0.504771 total=13609 INFO[12:10:21] Converged to 0.18 % FDR with 17525 Ions decoy=32 threshold=0.504771 total=17557 INFO[12:10:21] Post processing identifications INFO[12:10:23] Assigning protein identifications to layers INFO[12:10:24] Processing protein inference INFO[12:10:25] Synchronizing PSMs and proteins INFO[12:10:25] Final report numbers after FDR filtering, and post-processing ions=17525 peptides=13578 proteins=1514 psms=55339 INFO[12:10:25] Saving INFO[12:10:26] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:10:26] Executing Filter v4.8.1 INFO[12:10:27] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:10:27] Processing peptide identification files INFO[12:10:27] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd\interact-S22049-Arjun-84-2nd.pep.xml INFO[12:10:32] 1+ Charge profile decoy=0 target=0 INFO[12:10:32] 2+ Charge profile decoy=250 target=40894 INFO[12:10:32] 3+ Charge profile decoy=64 target=15356 INFO[12:10:32] 4+ Charge profile decoy=4 target=1199 INFO[12:10:32] 5+ Charge profile decoy=6 target=84 INFO[12:10:32] 6+ Charge profile decoy=0 target=1 INFO[12:10:32] Database search results ions=18276 peptides=14075 psms=57858 INFO[12:10:32] Converged to 0.56 % FDR with 57534 PSMs decoy=324 threshold=0.500592 total=57858 INFO[12:10:32] Converged to 0.99 % FDR with 13680 Peptides decoy=136 threshold=0.779144 total=13816 INFO[12:10:32] Converged to 1.00 % FDR with 17921 Ions decoy=179 threshold=0.670587 total=18100 INFO[12:10:34] Protein inference results decoy=2210 target=2337 INFO[12:10:34] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:10:35] Applying sequential FDR estimation ions=17970 peptides=13771 psms=57498 INFO[12:10:36] Converged to 0.08 % FDR with 57454 PSMs decoy=44 threshold=0.500849 total=57498 INFO[12:10:36] Converged to 0.24 % FDR with 13738 Peptides decoy=33 threshold=0.500849 total=13771 INFO[12:10:36] Converged to 0.18 % FDR with 17937 Ions decoy=33 threshold=0.500849 total=17970 INFO[12:10:36] Post processing identifications INFO[12:10:38] Assigning protein identifications to layers INFO[12:10:38] Processing protein inference INFO[12:10:39] Synchronizing PSMs and proteins INFO[12:10:40] Final report numbers after FDR filtering, and post-processing ions=17937 peptides=13738 proteins=1489 psms=57454 INFO[12:10:40] Saving INFO[12:10:40] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:10:41] Executing Filter v4.8.1 INFO[12:10:41] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:10:41] Processing peptide identification files INFO[12:10:41] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85\interact-S22049-Arjun-85.pep.xml INFO[12:10:47] 1+ Charge profile decoy=0 target=0 INFO[12:10:47] 2+ Charge profile decoy=247 target=41742 INFO[12:10:47] 3+ Charge profile decoy=72 target=15706 INFO[12:10:47] 4+ Charge profile decoy=8 target=1564 INFO[12:10:47] 5+ Charge profile decoy=3 target=188 INFO[12:10:47] 6+ Charge profile decoy=0 target=7 INFO[12:10:47] Database search results ions=18428 peptides=14244 psms=59537 INFO[12:10:47] Converged to 0.56 % FDR with 59207 PSMs decoy=330 threshold=0.500997 total=59537 INFO[12:10:47] Converged to 0.99 % FDR with 13797 Peptides decoy=137 threshold=0.804705 total=13934 INFO[12:10:47] Converged to 1.00 % FDR with 18027 Ions decoy=180 threshold=0.740577 total=18207 INFO[12:10:49] Protein inference results decoy=2210 target=2337 INFO[12:10:49] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:10:50] Applying sequential FDR estimation ions=18103 peptides=13921 psms=59164 INFO[12:10:50] Converged to 0.08 % FDR with 59116 PSMs decoy=48 threshold=0.502039 total=59164 INFO[12:10:50] Converged to 0.27 % FDR with 13883 Peptides decoy=38 threshold=0.503345 total=13921 INFO[12:10:50] Converged to 0.22 % FDR with 18064 Ions decoy=39 threshold=0.503345 total=18103 INFO[12:10:51] Post processing identifications INFO[12:10:53] Assigning protein identifications to layers INFO[12:10:53] Processing protein inference INFO[12:10:54] Synchronizing PSMs and proteins INFO[12:10:55] Final report numbers after FDR filtering, and post-processing ions=18064 peptides=13883 proteins=1521 psms=59116 INFO[12:10:55] Saving INFO[12:10:55] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:10:56] Executing Filter v4.8.1 INFO[12:10:56] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:10:56] Processing peptide identification files INFO[12:10:56] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86\interact-S22049-Arjun-86.pep.xml INFO[12:11:01] 1+ Charge profile decoy=0 target=0 INFO[12:11:01] 2+ Charge profile decoy=262 target=40858 INFO[12:11:01] 3+ Charge profile decoy=77 target=14026 INFO[12:11:01] 4+ Charge profile decoy=2 target=954 INFO[12:11:01] 5+ Charge profile decoy=1 target=67 INFO[12:11:01] 6+ Charge profile decoy=0 target=0 INFO[12:11:02] Database search results ions=17552 peptides=13780 psms=56247 INFO[12:11:02] Converged to 0.61 % FDR with 55905 PSMs decoy=342 threshold=0.500188 total=56247 INFO[12:11:02] Converged to 1.00 % FDR with 13344 Peptides decoy=133 threshold=0.731647 total=13477 INFO[12:11:02] Converged to 1.00 % FDR with 17144 Ions decoy=171 threshold=0.677952 total=17315 INFO[12:11:03] Protein inference results decoy=2210 target=2337 INFO[12:11:03] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:11:05] Applying sequential FDR estimation ions=17232 peptides=13462 psms=55860 INFO[12:11:05] Converged to 0.09 % FDR with 55811 PSMs decoy=49 threshold=0.500188 total=55860 INFO[12:11:05] Converged to 0.27 % FDR with 13426 Peptides decoy=36 threshold=0.503666 total=13462 INFO[12:11:05] Converged to 0.21 % FDR with 17196 Ions decoy=36 threshold=0.503666 total=17232 INFO[12:11:05] Post processing identifications INFO[12:11:07] Assigning protein identifications to layers INFO[12:11:08] Processing protein inference INFO[12:11:09] Synchronizing PSMs and proteins INFO[12:11:09] Final report numbers after FDR filtering, and post-processing ions=17196 peptides=13426 proteins=1521 psms=55811 INFO[12:11:09] Saving INFO[12:11:10] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:11:10] Executing Filter v4.8.1 INFO[12:11:11] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:11:11] Processing peptide identification files INFO[12:11:11] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87\interact-S22049-Arjun-87.pep.xml INFO[12:11:16] 1+ Charge profile decoy=0 target=0 INFO[12:11:16] 2+ Charge profile decoy=281 target=40955 INFO[12:11:16] 3+ Charge profile decoy=96 target=16543 INFO[12:11:16] 4+ Charge profile decoy=7 target=1534 INFO[12:11:16] 5+ Charge profile decoy=1 target=140 INFO[12:11:16] 6+ Charge profile decoy=0 target=5 INFO[12:11:16] Database search results ions=18717 peptides=14436 psms=59562 INFO[12:11:16] Converged to 0.65 % FDR with 59177 PSMs decoy=385 threshold=0.50046 total=59562 INFO[12:11:16] Converged to 1.00 % FDR with 13930 Peptides decoy=139 threshold=0.745935 total=14069 INFO[12:11:16] Converged to 0.99 % FDR with 18227 Ions decoy=182 threshold=0.648566 total=18409 INFO[12:11:18] Protein inference results decoy=2210 target=2337 INFO[12:11:18] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:11:20] Applying sequential FDR estimation ions=18339 peptides=14060 psms=59118 INFO[12:11:20] Converged to 0.06 % FDR with 59081 PSMs decoy=37 threshold=0.500635 total=59118 INFO[12:11:20] Converged to 0.21 % FDR with 14031 Peptides decoy=29 threshold=0.502003 total=14060 INFO[12:11:20] Converged to 0.16 % FDR with 18309 Ions decoy=30 threshold=0.501922 total=18339 INFO[12:11:20] Post processing identifications INFO[12:11:22] Assigning protein identifications to layers INFO[12:11:22] Processing protein inference INFO[12:11:24] Synchronizing PSMs and proteins INFO[12:11:24] Final report numbers after FDR filtering, and post-processing ions=18309 peptides=14031 proteins=1532 psms=59081 INFO[12:11:24] Saving INFO[12:11:24] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:11:25] Executing Filter v4.8.1 INFO[12:11:26] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:11:26] Processing peptide identification files INFO[12:11:26] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88\interact-S22049-Arjun-88.pep.xml INFO[12:11:31] 1+ Charge profile decoy=0 target=0 INFO[12:11:31] 2+ Charge profile decoy=265 target=41511 INFO[12:11:31] 3+ Charge profile decoy=73 target=15016 INFO[12:11:31] 4+ Charge profile decoy=5 target=1002 INFO[12:11:31] 5+ Charge profile decoy=1 target=47 INFO[12:11:31] 6+ Charge profile decoy=0 target=0 INFO[12:11:31] Database search results ions=17648 peptides=13767 psms=57920 INFO[12:11:31] Converged to 0.60 % FDR with 57576 PSMs decoy=344 threshold=0.500017 total=57920 INFO[12:11:31] Converged to 1.00 % FDR with 13338 Peptides decoy=133 threshold=0.767487 total=13471 INFO[12:11:31] Converged to 1.00 % FDR with 17242 Ions decoy=172 threshold=0.695491 total=17414 INFO[12:11:33] Protein inference results decoy=2210 target=2337 INFO[12:11:33] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:11:35] Applying sequential FDR estimation ions=17336 peptides=13456 psms=57552 INFO[12:11:35] Converged to 0.09 % FDR with 57502 PSMs decoy=50 threshold=0.500434 total=57552 INFO[12:11:35] Converged to 0.28 % FDR with 13418 Peptides decoy=38 threshold=0.500434 total=13456 INFO[12:11:35] Converged to 0.23 % FDR with 17297 Ions decoy=39 threshold=0.500434 total=17336 INFO[12:11:35] Post processing identifications INFO[12:11:37] Assigning protein identifications to layers INFO[12:11:37] Processing protein inference INFO[12:11:39] Synchronizing PSMs and proteins INFO[12:11:39] Final report numbers after FDR filtering, and post-processing ions=17297 peptides=13418 proteins=1489 psms=57502 INFO[12:11:39] Saving INFO[12:11:39] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:11:40] Executing Filter v4.8.1 INFO[12:11:40] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:11:40] Processing peptide identification files INFO[12:11:40] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89\interact-S22049-Arjun-89.pep.xml INFO[12:11:46] 1+ Charge profile decoy=0 target=0 INFO[12:11:46] 2+ Charge profile decoy=247 target=41794 INFO[12:11:46] 3+ Charge profile decoy=97 target=17428 INFO[12:11:46] 4+ Charge profile decoy=5 target=1736 INFO[12:11:46] 5+ Charge profile decoy=1 target=185 INFO[12:11:46] 6+ Charge profile decoy=0 target=6 INFO[12:11:46] Database search results ions=19203 peptides=14598 psms=61499 INFO[12:11:46] Converged to 0.57 % FDR with 61149 PSMs decoy=350 threshold=0.500114 total=61499 INFO[12:11:46] Converged to 1.00 % FDR with 14126 Peptides decoy=141 threshold=0.784129 total=14267 INFO[12:11:46] Converged to 1.00 % FDR with 18753 Ions decoy=187 threshold=0.746063 total=18940 INFO[12:11:48] Protein inference results decoy=2210 target=2337 INFO[12:11:48] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:11:49] Applying sequential FDR estimation ions=18870 peptides=14267 psms=61114 INFO[12:11:49] Converged to 0.07 % FDR with 61072 PSMs decoy=42 threshold=0.500114 total=61114 INFO[12:11:49] Converged to 0.26 % FDR with 14230 Peptides decoy=37 threshold=0.50426 total=14267 INFO[12:11:49] Converged to 0.20 % FDR with 18833 Ions decoy=37 threshold=0.50426 total=18870 INFO[12:11:50] Post processing identifications INFO[12:11:52] Assigning protein identifications to layers INFO[12:11:52] Processing protein inference INFO[12:11:53] Synchronizing PSMs and proteins INFO[12:11:54] Final report numbers after FDR filtering, and post-processing ions=18833 peptides=14230 proteins=1529 psms=61072 INFO[12:11:54] Saving INFO[12:11:54] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:11:55] Executing Filter v4.8.1 INFO[12:11:55] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:11:55] Processing peptide identification files INFO[12:11:55] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9\interact-S22049-Arjun-9.pep.xml INFO[12:12:00] 1+ Charge profile decoy=0 target=0 INFO[12:12:00] 2+ Charge profile decoy=299 target=44135 INFO[12:12:00] 3+ Charge profile decoy=51 target=10599 INFO[12:12:00] 4+ Charge profile decoy=1 target=188 INFO[12:12:00] 5+ Charge profile decoy=0 target=0 INFO[12:12:00] 6+ Charge profile decoy=0 target=0 INFO[12:12:00] Database search results ions=12080 peptides=9814 psms=55273 INFO[12:12:00] Converged to 0.64 % FDR with 54922 PSMs decoy=351 threshold=0.500471 total=55273 INFO[12:12:00] Converged to 0.99 % FDR with 9394 Peptides decoy=93 threshold=0.84277 total=9487 INFO[12:12:00] Converged to 0.99 % FDR with 11669 Ions decoy=116 threshold=0.804694 total=11785 INFO[12:12:01] Protein inference results decoy=2210 target=2337 INFO[12:12:02] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:12:03] Applying sequential FDR estimation ions=11779 peptides=9514 psms=54893 INFO[12:12:03] Converged to 0.08 % FDR with 54851 PSMs decoy=42 threshold=0.502345 total=54893 INFO[12:12:03] Converged to 0.31 % FDR with 9485 Peptides decoy=29 threshold=0.504398 total=9514 INFO[12:12:03] Converged to 0.26 % FDR with 11749 Ions decoy=30 threshold=0.504398 total=11779 INFO[12:12:03] Post processing identifications INFO[12:12:05] Assigning protein identifications to layers INFO[12:12:05] Processing protein inference INFO[12:12:06] Synchronizing PSMs and proteins INFO[12:12:07] Final report numbers after FDR filtering, and post-processing ions=11749 peptides=9485 proteins=1461 psms=54851 INFO[12:12:07] Saving INFO[12:12:07] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:12:08] Executing Filter v4.8.1 INFO[12:12:08] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:12:08] Processing peptide identification files INFO[12:12:08] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90\interact-S22049-Arjun-90.pep.xml INFO[12:12:13] 1+ Charge profile decoy=0 target=0 INFO[12:12:13] 2+ Charge profile decoy=281 target=41039 INFO[12:12:13] 3+ Charge profile decoy=77 target=14817 INFO[12:12:13] 4+ Charge profile decoy=6 target=1037 INFO[12:12:13] 5+ Charge profile decoy=1 target=68 INFO[12:12:13] 6+ Charge profile decoy=0 target=0 INFO[12:12:13] Database search results ions=17994 peptides=13977 psms=57326 INFO[12:12:13] Converged to 0.64 % FDR with 56961 PSMs decoy=365 threshold=0.500269 total=57326 INFO[12:12:13] Converged to 1.00 % FDR with 13534 Peptides decoy=135 threshold=0.731217 total=13669 INFO[12:12:13] Converged to 1.00 % FDR with 17569 Ions decoy=175 threshold=0.665347 total=17744 INFO[12:12:15] Protein inference results decoy=2210 target=2337 INFO[12:12:15] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:12:16] Applying sequential FDR estimation ions=17655 peptides=13640 psms=56905 INFO[12:12:16] Converged to 0.07 % FDR with 56865 PSMs decoy=40 threshold=0.501308 total=56905 INFO[12:12:16] Converged to 0.24 % FDR with 13608 Peptides decoy=32 threshold=0.501308 total=13640 INFO[12:12:16] Converged to 0.19 % FDR with 17622 Ions decoy=33 threshold=0.501308 total=17655 INFO[12:12:17] Post processing identifications INFO[12:12:19] Assigning protein identifications to layers INFO[12:12:19] Processing protein inference INFO[12:12:20] Synchronizing PSMs and proteins INFO[12:12:21] Final report numbers after FDR filtering, and post-processing ions=17622 peptides=13608 proteins=1519 psms=56865 INFO[12:12:21] Saving INFO[12:12:21] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:12:22] Executing Filter v4.8.1 INFO[12:12:22] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:12:22] Processing peptide identification files INFO[12:12:22] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91\interact-S22049-Arjun-91.pep.xml INFO[12:12:27] 1+ Charge profile decoy=0 target=0 INFO[12:12:27] 2+ Charge profile decoy=242 target=39658 INFO[12:12:27] 3+ Charge profile decoy=71 target=15602 INFO[12:12:27] 4+ Charge profile decoy=7 target=1355 INFO[12:12:27] 5+ Charge profile decoy=3 target=118 INFO[12:12:27] 6+ Charge profile decoy=0 target=1 INFO[12:12:27] Database search results ions=19120 peptides=14574 psms=57057 INFO[12:12:27] Converged to 0.57 % FDR with 56734 PSMs decoy=323 threshold=0.500365 total=57057 INFO[12:12:27] Converged to 0.99 % FDR with 14187 Peptides decoy=141 threshold=0.738929 total=14328 INFO[12:12:27] Converged to 1.00 % FDR with 18751 Ions decoy=187 threshold=0.636849 total=18938 INFO[12:12:29] Protein inference results decoy=2210 target=2337 INFO[12:12:29] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:12:30] Applying sequential FDR estimation ions=18837 peptides=14293 psms=56730 INFO[12:12:30] Converged to 0.09 % FDR with 56677 PSMs decoy=53 threshold=0.500365 total=56730 INFO[12:12:30] Converged to 0.30 % FDR with 14250 Peptides decoy=43 threshold=0.500365 total=14293 INFO[12:12:30] Converged to 0.23 % FDR with 18794 Ions decoy=43 threshold=0.500365 total=18837 INFO[12:12:31] Post processing identifications INFO[12:12:33] Assigning protein identifications to layers INFO[12:12:33] Processing protein inference INFO[12:12:34] Synchronizing PSMs and proteins INFO[12:12:34] Final report numbers after FDR filtering, and post-processing ions=18794 peptides=14250 proteins=1521 psms=56677 INFO[12:12:34] Saving INFO[12:12:35] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:12:36] Executing Filter v4.8.1 INFO[12:12:36] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:12:36] Processing peptide identification files INFO[12:12:36] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92\interact-S22049-Arjun-92.pep.xml INFO[12:12:41] 1+ Charge profile decoy=0 target=0 INFO[12:12:41] 2+ Charge profile decoy=238 target=38259 INFO[12:12:41] 3+ Charge profile decoy=61 target=14392 INFO[12:12:41] 4+ Charge profile decoy=4 target=948 INFO[12:12:41] 5+ Charge profile decoy=1 target=35 INFO[12:12:41] 6+ Charge profile decoy=0 target=0 INFO[12:12:41] Database search results ions=17671 peptides=13453 psms=53938 INFO[12:12:41] Converged to 0.57 % FDR with 53634 PSMs decoy=304 threshold=0.500043 total=53938 INFO[12:12:41] Converged to 1.00 % FDR with 13063 Peptides decoy=130 threshold=0.763834 total=13193 INFO[12:12:41] Converged to 1.00 % FDR with 17310 Ions decoy=173 threshold=0.668235 total=17483 INFO[12:12:42] Protein inference results decoy=2210 target=2337 INFO[12:12:43] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:12:44] Applying sequential FDR estimation ions=17386 peptides=13169 psms=53606 INFO[12:12:44] Converged to 0.07 % FDR with 53569 PSMs decoy=37 threshold=0.500043 total=53606 INFO[12:12:44] Converged to 0.22 % FDR with 13140 Peptides decoy=29 threshold=0.501658 total=13169 INFO[12:12:44] Converged to 0.17 % FDR with 17357 Ions decoy=29 threshold=0.501658 total=17386 INFO[12:12:44] Post processing identifications INFO[12:12:46] Assigning protein identifications to layers INFO[12:12:46] Processing protein inference INFO[12:12:47] Synchronizing PSMs and proteins INFO[12:12:48] Final report numbers after FDR filtering, and post-processing ions=17357 peptides=13140 proteins=1481 psms=53569 INFO[12:12:48] Saving INFO[12:12:48] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:12:49] Executing Filter v4.8.1 INFO[12:12:49] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:12:49] Processing peptide identification files INFO[12:12:49] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93\interact-S22049-Arjun-93.pep.xml INFO[12:12:54] 1+ Charge profile decoy=0 target=0 INFO[12:12:54] 2+ Charge profile decoy=208 target=39518 INFO[12:12:54] 3+ Charge profile decoy=75 target=17477 INFO[12:12:54] 4+ Charge profile decoy=9 target=1878 INFO[12:12:54] 5+ Charge profile decoy=1 target=189 INFO[12:12:54] 6+ Charge profile decoy=0 target=9 INFO[12:12:54] Database search results ions=19670 peptides=14786 psms=59365 INFO[12:12:54] Converged to 0.50 % FDR with 59072 PSMs decoy=293 threshold=0.500228 total=59365 INFO[12:12:54] Converged to 1.00 % FDR with 14438 Peptides decoy=144 threshold=0.737855 total=14582 INFO[12:12:54] Converged to 1.00 % FDR with 19349 Ions decoy=193 threshold=0.626041 total=19542 INFO[12:12:56] Protein inference results decoy=2210 target=2337 INFO[12:12:56] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:12:57] Applying sequential FDR estimation ions=19410 peptides=14529 psms=59068 INFO[12:12:57] Converged to 0.09 % FDR with 59017 PSMs decoy=51 threshold=0.500892 total=59068 INFO[12:12:58] Converged to 0.27 % FDR with 14490 Peptides decoy=39 threshold=0.501647 total=14529 INFO[12:12:58] Converged to 0.21 % FDR with 19370 Ions decoy=40 threshold=0.501647 total=19410 INFO[12:12:58] Post processing identifications INFO[12:13:00] Assigning protein identifications to layers INFO[12:13:00] Processing protein inference INFO[12:13:01] Synchronizing PSMs and proteins INFO[12:13:02] Final report numbers after FDR filtering, and post-processing ions=19370 peptides=14490 proteins=1513 psms=59017 INFO[12:13:02] Saving INFO[12:13:02] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:13:03] Executing Filter v4.8.1 INFO[12:13:03] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:13:03] Processing peptide identification files INFO[12:13:03] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94\interact-S22049-Arjun-94.pep.xml INFO[12:13:08] 1+ Charge profile decoy=0 target=0 INFO[12:13:08] 2+ Charge profile decoy=212 target=39185 INFO[12:13:08] 3+ Charge profile decoy=64 target=13320 INFO[12:13:08] 4+ Charge profile decoy=7 target=902 INFO[12:13:08] 5+ Charge profile decoy=1 target=54 INFO[12:13:08] 6+ Charge profile decoy=0 target=0 INFO[12:13:08] Database search results ions=17738 peptides=13737 psms=53745 INFO[12:13:08] Converged to 0.53 % FDR with 53461 PSMs decoy=284 threshold=0.50012 total=53745 INFO[12:13:08] Converged to 1.00 % FDR with 13420 Peptides decoy=134 threshold=0.688027 total=13554 INFO[12:13:08] Converged to 1.00 % FDR with 17430 Ions decoy=174 threshold=0.627395 total=17604 INFO[12:13:10] Protein inference results decoy=2210 target=2337 INFO[12:13:10] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:13:11] Applying sequential FDR estimation ions=17477 peptides=13478 psms=53423 INFO[12:13:11] Converged to 0.08 % FDR with 53382 PSMs decoy=41 threshold=0.500673 total=53423 INFO[12:13:11] Converged to 0.22 % FDR with 13448 Peptides decoy=30 threshold=0.502146 total=13478 INFO[12:13:11] Converged to 0.18 % FDR with 17445 Ions decoy=32 threshold=0.501444 total=17477 INFO[12:13:11] Post processing identifications INFO[12:13:13] Assigning protein identifications to layers INFO[12:13:13] Processing protein inference INFO[12:13:15] Synchronizing PSMs and proteins INFO[12:13:15] Final report numbers after FDR filtering, and post-processing ions=17445 peptides=13448 proteins=1519 psms=53382 INFO[12:13:15] Saving INFO[12:13:15] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:13:16] Executing Filter v4.8.1 INFO[12:13:17] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:13:17] Processing peptide identification files INFO[12:13:17] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95\interact-S22049-Arjun-95.pep.xml INFO[12:13:22] 1+ Charge profile decoy=0 target=0 INFO[12:13:22] 2+ Charge profile decoy=224 target=40069 INFO[12:13:22] 3+ Charge profile decoy=79 target=15429 INFO[12:13:22] 4+ Charge profile decoy=1 target=1220 INFO[12:13:22] 5+ Charge profile decoy=1 target=70 INFO[12:13:22] 6+ Charge profile decoy=0 target=0 INFO[12:13:22] Database search results ions=18738 peptides=14458 psms=57093 INFO[12:13:22] Converged to 0.54 % FDR with 56788 PSMs decoy=305 threshold=0.500445 total=57093 INFO[12:13:22] Converged to 1.00 % FDR with 14110 Peptides decoy=141 threshold=0.714399 total=14251 INFO[12:13:22] Converged to 1.00 % FDR with 18400 Ions decoy=184 threshold=0.637903 total=18584 INFO[12:13:23] Protein inference results decoy=2210 target=2337 INFO[12:13:24] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:13:25] Applying sequential FDR estimation ions=18460 peptides=14181 psms=56763 INFO[12:13:25] Converged to 0.07 % FDR with 56724 PSMs decoy=39 threshold=0.501045 total=56763 INFO[12:13:25] Converged to 0.19 % FDR with 14154 Peptides decoy=27 threshold=0.501045 total=14181 INFO[12:13:25] Converged to 0.15 % FDR with 18432 Ions decoy=28 threshold=0.501045 total=18460 INFO[12:13:25] Post processing identifications INFO[12:13:27] Assigning protein identifications to layers INFO[12:13:27] Processing protein inference INFO[12:13:29] Synchronizing PSMs and proteins INFO[12:13:29] Final report numbers after FDR filtering, and post-processing ions=18432 peptides=14154 proteins=1546 psms=56724 INFO[12:13:29] Saving INFO[12:13:30] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:13:30] Executing Filter v4.8.1 INFO[12:13:31] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:13:31] Processing peptide identification files INFO[12:13:31] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96\interact-S22049-Arjun-96.pep.xml INFO[12:13:35] 1+ Charge profile decoy=0 target=0 INFO[12:13:35] 2+ Charge profile decoy=235 target=38917 INFO[12:13:35] 3+ Charge profile decoy=58 target=13492 INFO[12:13:35] 4+ Charge profile decoy=7 target=1056 INFO[12:13:35] 5+ Charge profile decoy=1 target=77 INFO[12:13:35] 6+ Charge profile decoy=0 target=0 INFO[12:13:35] Database search results ions=17564 peptides=13655 psms=53843 INFO[12:13:35] Converged to 0.56 % FDR with 53542 PSMs decoy=301 threshold=0.500098 total=53843 INFO[12:13:35] Converged to 1.00 % FDR with 13301 Peptides decoy=133 threshold=0.715462 total=13434 INFO[12:13:35] Converged to 1.00 % FDR with 17228 Ions decoy=172 threshold=0.657923 total=17400 INFO[12:13:37] Protein inference results decoy=2210 target=2337 INFO[12:13:37] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:13:38] Applying sequential FDR estimation ions=17290 peptides=13383 psms=53517 INFO[12:13:38] Converged to 0.08 % FDR with 53472 PSMs decoy=45 threshold=0.500098 total=53517 INFO[12:13:38] Converged to 0.27 % FDR with 13347 Peptides decoy=36 threshold=0.501743 total=13383 INFO[12:13:38] Converged to 0.21 % FDR with 17254 Ions decoy=36 threshold=0.501743 total=17290 INFO[12:13:39] Post processing identifications INFO[12:13:41] Assigning protein identifications to layers INFO[12:13:41] Processing protein inference INFO[12:13:42] Synchronizing PSMs and proteins INFO[12:13:42] Final report numbers after FDR filtering, and post-processing ions=17254 peptides=13347 proteins=1489 psms=53472 INFO[12:13:42] Saving INFO[12:13:43] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:13:43] Executing Filter v4.8.1 INFO[12:13:44] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:13:44] Processing peptide identification files INFO[12:13:44] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97\interact-S22049-Arjun-97.pep.xml INFO[12:13:46] 1+ Charge profile decoy=0 target=0 INFO[12:13:46] 2+ Charge profile decoy=255 target=17975 INFO[12:13:46] 3+ Charge profile decoy=39 target=4342 INFO[12:13:46] 4+ Charge profile decoy=3 target=308 INFO[12:13:46] 5+ Charge profile decoy=1 target=23 INFO[12:13:46] 6+ Charge profile decoy=0 target=0 INFO[12:13:46] Database search results ions=9177 peptides=7693 psms=22946 INFO[12:13:46] Converged to 1.00 % FDR with 22511 PSMs decoy=225 threshold=0.619311 total=22736 INFO[12:13:46] Converged to 0.99 % FDR with 7245 Peptides decoy=72 threshold=0.859993 total=7317 INFO[12:13:46] Converged to 1.00 % FDR with 8731 Ions decoy=87 threshold=0.833613 total=8818 INFO[12:13:47] Protein inference results decoy=2210 target=2337 INFO[12:13:48] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:13:48] Applying sequential FDR estimation ions=8843 peptides=7365 psms=22485 INFO[12:13:48] Converged to 0.10 % FDR with 22462 PSMs decoy=23 threshold=0.621875 total=22485 INFO[12:13:48] Converged to 0.27 % FDR with 7345 Peptides decoy=20 threshold=0.621875 total=7365 INFO[12:13:48] Converged to 0.24 % FDR with 8822 Ions decoy=21 threshold=0.621875 total=8843 INFO[12:13:48] Post processing identifications INFO[12:13:49] Assigning protein identifications to layers INFO[12:13:49] Processing protein inference INFO[12:13:50] Synchronizing PSMs and proteins INFO[12:13:51] Final report numbers after FDR filtering, and post-processing ions=8822 peptides=7345 proteins=1342 psms=22462 INFO[12:13:51] Saving INFO[12:13:51] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:13:51] Executing Filter v4.8.1 INFO[12:13:52] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:13:52] Processing peptide identification files INFO[12:13:52] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98\interact-S22049-Arjun-98.pep.xml INFO[12:13:56] 1+ Charge profile decoy=0 target=0 INFO[12:13:56] 2+ Charge profile decoy=221 target=37547 INFO[12:13:56] 3+ Charge profile decoy=54 target=13139 INFO[12:13:56] 4+ Charge profile decoy=5 target=967 INFO[12:13:56] 5+ Charge profile decoy=1 target=65 INFO[12:13:56] 6+ Charge profile decoy=0 target=0 INFO[12:13:56] Database search results ions=17523 peptides=13770 psms=51999 INFO[12:13:56] Converged to 0.54 % FDR with 51718 PSMs decoy=281 threshold=0.501293 total=51999 INFO[12:13:56] Converged to 1.00 % FDR with 13432 Peptides decoy=134 threshold=0.737218 total=13566 INFO[12:13:56] Converged to 1.00 % FDR with 17210 Ions decoy=172 threshold=0.650286 total=17382 INFO[12:13:58] Protein inference results decoy=2210 target=2337 INFO[12:13:58] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:13:59] Applying sequential FDR estimation ions=17236 peptides=13484 psms=51671 INFO[12:13:59] Converged to 0.07 % FDR with 51637 PSMs decoy=34 threshold=0.501293 total=51671 INFO[12:13:59] Converged to 0.20 % FDR with 13457 Peptides decoy=27 threshold=0.501293 total=13484 INFO[12:13:59] Converged to 0.16 % FDR with 17208 Ions decoy=28 threshold=0.501293 total=17236 INFO[12:14:00] Post processing identifications INFO[12:14:02] Assigning protein identifications to layers INFO[12:14:02] Processing protein inference INFO[12:14:03] Synchronizing PSMs and proteins INFO[12:14:03] Final report numbers after FDR filtering, and post-processing ions=17208 peptides=13457 proteins=1500 psms=51637 INFO[12:14:03] Saving INFO[12:14:04] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherFilter [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe filter --sequential --prot 0.05 --tag rev_ --pepxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99 --protxml D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\combined.prot.xml --razorbin D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin INFO[12:14:04] Executing Filter v4.8.1 INFO[12:14:05] Fetching razor assignment from: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\.meta\razor.bin: 38594 razor groups imported. INFO[12:14:05] Processing peptide identification files INFO[12:14:05] Parsing D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99\interact-S22049-Arjun-99.pep.xml INFO[12:14:09] 1+ Charge profile decoy=0 target=0 INFO[12:14:09] 2+ Charge profile decoy=198 target=34069 INFO[12:14:09] 3+ Charge profile decoy=54 target=13304 INFO[12:14:09] 4+ Charge profile decoy=4 target=1130 INFO[12:14:09] 5+ Charge profile decoy=2 target=84 INFO[12:14:09] 6+ Charge profile decoy=0 target=0 INFO[12:14:09] Database search results ions=17829 peptides=13825 psms=48845 INFO[12:14:09] Converged to 0.53 % FDR with 48587 PSMs decoy=258 threshold=0.500692 total=48845 INFO[12:14:09] Converged to 1.00 % FDR with 13515 Peptides decoy=135 threshold=0.695483 total=13650 INFO[12:14:09] Converged to 1.00 % FDR with 17541 Ions decoy=175 threshold=0.614368 total=17716 INFO[12:14:11] Protein inference results decoy=2210 target=2337 INFO[12:14:11] Converged to 4.93 % FDR with 1744 Proteins decoy=86 threshold=0.9978 total=1830 INFO[12:14:12] Applying sequential FDR estimation ions=17601 peptides=13598 psms=48575 INFO[12:14:12] Converged to 0.08 % FDR with 48534 PSMs decoy=41 threshold=0.500692 total=48575 INFO[12:14:12] Converged to 0.23 % FDR with 13567 Peptides decoy=31 threshold=0.500692 total=13598 INFO[12:14:12] Converged to 0.18 % FDR with 17569 Ions decoy=32 threshold=0.500692 total=17601 INFO[12:14:12] Post processing identifications INFO[12:14:14] Assigning protein identifications to layers INFO[12:14:14] Processing protein inference INFO[12:14:15] Synchronizing PSMs and proteins INFO[12:14:16] Final report numbers after FDR filtering, and post-processing ions=17569 peptides=13567 proteins=1503 psms=48534 INFO[12:14:16] Saving INFO[12:14:16] Done Process 'PhilosopherFilter' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:17] Executing Report v4.8.1 INFO[12:14:17] Creating reports INFO[12:14:19] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:20] Executing Report v4.8.1 INFO[12:14:20] Creating reports INFO[12:14:22] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:22] Executing Report v4.8.1 INFO[12:14:22] Creating reports INFO[12:14:24] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:25] Executing Report v4.8.1 INFO[12:14:25] Creating reports INFO[12:14:27] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:28] Executing Report v4.8.1 INFO[12:14:28] Creating reports INFO[12:14:30] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:30] Executing Report v4.8.1 INFO[12:14:30] Creating reports INFO[12:14:32] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:33] Executing Report v4.8.1 INFO[12:14:33] Creating reports INFO[12:14:35] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:36] Executing Report v4.8.1 INFO[12:14:36] Creating reports INFO[12:14:38] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:39] Executing Report v4.8.1 INFO[12:14:39] Creating reports INFO[12:14:41] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:41] Executing Report v4.8.1 INFO[12:14:41] Creating reports INFO[12:14:44] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:44] Executing Report v4.8.1 INFO[12:14:44] Creating reports INFO[12:14:47] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:47] Executing Report v4.8.1 INFO[12:14:47] Creating reports INFO[12:14:49] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:50] Executing Report v4.8.1 INFO[12:14:50] Creating reports INFO[12:14:52] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:53] Executing Report v4.8.1 INFO[12:14:53] Creating reports INFO[12:14:55] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:55] Executing Report v4.8.1 INFO[12:14:55] Creating reports INFO[12:14:57] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:14:58] Executing Report v4.8.1 INFO[12:14:58] Creating reports INFO[12:15:00] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:01] Executing Report v4.8.1 INFO[12:15:01] Creating reports INFO[12:15:03] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:04] Executing Report v4.8.1 INFO[12:15:04] Creating reports INFO[12:15:06] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:07] Executing Report v4.8.1 INFO[12:15:07] Creating reports INFO[12:15:09] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:10] Executing Report v4.8.1 INFO[12:15:10] Creating reports INFO[12:15:11] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:12] Executing Report v4.8.1 INFO[12:15:12] Creating reports INFO[12:15:14] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:15] Executing Report v4.8.1 INFO[12:15:15] Creating reports INFO[12:15:17] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:17] Executing Report v4.8.1 INFO[12:15:17] Creating reports INFO[12:15:20] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:20] Executing Report v4.8.1 INFO[12:15:20] Creating reports INFO[12:15:23] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:23] Executing Report v4.8.1 INFO[12:15:23] Creating reports INFO[12:15:25] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:26] Executing Report v4.8.1 INFO[12:15:26] Creating reports INFO[12:15:28] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:28] Executing Report v4.8.1 INFO[12:15:28] Creating reports INFO[12:15:31] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:31] Executing Report v4.8.1 INFO[12:15:31] Creating reports INFO[12:15:34] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:34] Executing Report v4.8.1 INFO[12:15:34] Creating reports INFO[12:15:36] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:37] Executing Report v4.8.1 INFO[12:15:37] Creating reports INFO[12:15:39] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:40] Executing Report v4.8.1 INFO[12:15:40] Creating reports INFO[12:15:42] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:43] Executing Report v4.8.1 INFO[12:15:43] Creating reports INFO[12:15:45] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:46] Executing Report v4.8.1 INFO[12:15:46] Creating reports INFO[12:15:48] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:49] Executing Report v4.8.1 INFO[12:15:49] Creating reports INFO[12:15:51] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:52] Executing Report v4.8.1 INFO[12:15:52] Creating reports INFO[12:15:54] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:55] Executing Report v4.8.1 INFO[12:15:55] Creating reports INFO[12:15:57] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:15:58] Executing Report v4.8.1 INFO[12:15:58] Creating reports INFO[12:16:00] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:01] Executing Report v4.8.1 INFO[12:16:01] Creating reports INFO[12:16:03] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:04] Executing Report v4.8.1 INFO[12:16:04] Creating reports INFO[12:16:06] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:07] Executing Report v4.8.1 INFO[12:16:07] Creating reports INFO[12:16:09] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:09] Executing Report v4.8.1 INFO[12:16:09] Creating reports INFO[12:16:12] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:12] Executing Report v4.8.1 INFO[12:16:12] Creating reports INFO[12:16:15] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:15] Executing Report v4.8.1 INFO[12:16:15] Creating reports INFO[12:16:18] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:18] Executing Report v4.8.1 INFO[12:16:18] Creating reports INFO[12:16:21] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:21] Executing Report v4.8.1 INFO[12:16:21] Creating reports INFO[12:16:24] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:24] Executing Report v4.8.1 INFO[12:16:24] Creating reports INFO[12:16:26] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:27] Executing Report v4.8.1 INFO[12:16:27] Creating reports INFO[12:16:29] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:30] Executing Report v4.8.1 INFO[12:16:30] Creating reports INFO[12:16:32] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:33] Executing Report v4.8.1 INFO[12:16:33] Creating reports INFO[12:16:35] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:35] Executing Report v4.8.1 INFO[12:16:35] Creating reports INFO[12:16:37] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:38] Executing Report v4.8.1 INFO[12:16:38] Creating reports INFO[12:16:40] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:41] Executing Report v4.8.1 INFO[12:16:41] Creating reports INFO[12:16:43] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:44] Executing Report v4.8.1 INFO[12:16:44] Creating reports INFO[12:16:46] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:47] Executing Report v4.8.1 INFO[12:16:47] Creating reports INFO[12:16:48] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:49] Executing Report v4.8.1 INFO[12:16:49] Creating reports INFO[12:16:51] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:51] Executing Report v4.8.1 INFO[12:16:51] Creating reports INFO[12:16:54] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:54] Executing Report v4.8.1 INFO[12:16:54] Creating reports INFO[12:16:56] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:16:57] Executing Report v4.8.1 INFO[12:16:57] Creating reports INFO[12:16:59] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:00] Executing Report v4.8.1 INFO[12:17:00] Creating reports INFO[12:17:02] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:02] Executing Report v4.8.1 INFO[12:17:02] Creating reports INFO[12:17:05] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:05] Executing Report v4.8.1 INFO[12:17:05] Creating reports INFO[12:17:07] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:08] Executing Report v4.8.1 INFO[12:17:08] Creating reports INFO[12:17:10] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:10] Executing Report v4.8.1 INFO[12:17:10] Creating reports INFO[12:17:12] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:13] Executing Report v4.8.1 INFO[12:17:13] Creating reports INFO[12:17:15] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:15] Executing Report v4.8.1 INFO[12:17:15] Creating reports INFO[12:17:17] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:18] Executing Report v4.8.1 INFO[12:17:18] Creating reports INFO[12:17:20] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:20] Executing Report v4.8.1 INFO[12:17:20] Creating reports INFO[12:17:23] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:23] Executing Report v4.8.1 INFO[12:17:23] Creating reports INFO[12:17:25] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:26] Executing Report v4.8.1 INFO[12:17:26] Creating reports INFO[12:17:28] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:28] Executing Report v4.8.1 INFO[12:17:28] Creating reports INFO[12:17:30] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:31] Executing Report v4.8.1 INFO[12:17:31] Creating reports INFO[12:17:32] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:33] Executing Report v4.8.1 INFO[12:17:33] Creating reports INFO[12:17:35] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:35] Executing Report v4.8.1 INFO[12:17:35] Creating reports INFO[12:17:37] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:38] Executing Report v4.8.1 INFO[12:17:38] Creating reports INFO[12:17:41] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:41] Executing Report v4.8.1 INFO[12:17:41] Creating reports INFO[12:17:44] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:44] Executing Report v4.8.1 INFO[12:17:44] Creating reports INFO[12:17:46] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:47] Executing Report v4.8.1 INFO[12:17:47] Creating reports INFO[12:17:49] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:49] Executing Report v4.8.1 INFO[12:17:49] Creating reports INFO[12:17:52] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:52] Executing Report v4.8.1 INFO[12:17:52] Creating reports INFO[12:17:55] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:55] Executing Report v4.8.1 INFO[12:17:55] Creating reports INFO[12:17:57] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:17:58] Executing Report v4.8.1 INFO[12:17:58] Creating reports INFO[12:18:00] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:01] Executing Report v4.8.1 INFO[12:18:01] Creating reports INFO[12:18:03] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:04] Executing Report v4.8.1 INFO[12:18:04] Creating reports INFO[12:18:06] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:07] Executing Report v4.8.1 INFO[12:18:07] Creating reports INFO[12:18:09] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:10] Executing Report v4.8.1 INFO[12:18:10] Creating reports INFO[12:18:12] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:12] Executing Report v4.8.1 INFO[12:18:12] Creating reports INFO[12:18:14] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:15] Executing Report v4.8.1 INFO[12:18:15] Creating reports INFO[12:18:17] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:18] Executing Report v4.8.1 INFO[12:18:18] Creating reports INFO[12:18:20] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:21] Executing Report v4.8.1 INFO[12:18:21] Creating reports INFO[12:18:23] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:24] Executing Report v4.8.1 INFO[12:18:24] Creating reports INFO[12:18:26] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:26] Executing Report v4.8.1 INFO[12:18:26] Creating reports INFO[12:18:29] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:29] Executing Report v4.8.1 INFO[12:18:29] Creating reports INFO[12:18:31] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:31] Executing Report v4.8.1 INFO[12:18:31] Creating reports INFO[12:18:33] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:34] Executing Report v4.8.1 INFO[12:18:34] Creating reports INFO[12:18:36] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:37] Executing Report v4.8.1 INFO[12:18:37] Creating reports INFO[12:18:39] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:40] Executing Report v4.8.1 INFO[12:18:40] Creating reports INFO[12:18:42] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:43] Executing Report v4.8.1 INFO[12:18:43] Creating reports INFO[12:18:45] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:45] Executing Report v4.8.1 INFO[12:18:45] Creating reports INFO[12:18:48] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:48] Executing Report v4.8.1 INFO[12:18:48] Creating reports INFO[12:18:50] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:51] Executing Report v4.8.1 INFO[12:18:51] Creating reports INFO[12:18:53] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:54] Executing Report v4.8.1 INFO[12:18:54] Creating reports INFO[12:18:56] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:56] Executing Report v4.8.1 INFO[12:18:56] Creating reports INFO[12:18:58] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:18:59] Executing Report v4.8.1 INFO[12:18:59] Creating reports INFO[12:19:01] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:02] Executing Report v4.8.1 INFO[12:19:02] Creating reports INFO[12:19:04] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:05] Executing Report v4.8.1 INFO[12:19:05] Creating reports INFO[12:19:07] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:07] Executing Report v4.8.1 INFO[12:19:07] Creating reports INFO[12:19:09] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:10] Executing Report v4.8.1 INFO[12:19:10] Creating reports INFO[12:19:12] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:12] Executing Report v4.8.1 INFO[12:19:12] Creating reports INFO[12:19:14] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:15] Executing Report v4.8.1 INFO[12:19:15] Creating reports INFO[12:19:17] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:18] Executing Report v4.8.1 INFO[12:19:18] Creating reports INFO[12:19:20] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:20] Executing Report v4.8.1 INFO[12:19:20] Creating reports INFO[12:19:23] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:23] Executing Report v4.8.1 INFO[12:19:23] Creating reports INFO[12:19:25] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:25] Executing Report v4.8.1 INFO[12:19:25] Creating reports INFO[12:19:27] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:28] Executing Report v4.8.1 INFO[12:19:28] Creating reports INFO[12:19:29] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:30] Executing Report v4.8.1 INFO[12:19:30] Creating reports INFO[12:19:32] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:32] Executing Report v4.8.1 INFO[12:19:32] Creating reports INFO[12:19:34] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:35] Executing Report v4.8.1 INFO[12:19:35] Creating reports INFO[12:19:35] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:36] Executing Report v4.8.1 INFO[12:19:36] Creating reports INFO[12:19:38] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:39] Executing Report v4.8.1 INFO[12:19:39] Creating reports INFO[12:19:40] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:41] Executing Report v4.8.1 INFO[12:19:41] Creating reports INFO[12:19:43] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:44] Executing Report v4.8.1 INFO[12:19:44] Creating reports INFO[12:19:46] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:46] Executing Report v4.8.1 INFO[12:19:47] Creating reports INFO[12:19:49] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:49] Executing Report v4.8.1 INFO[12:19:49] Creating reports INFO[12:19:50] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:50] Executing Report v4.8.1 INFO[12:19:50] Creating reports INFO[12:19:53] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:53] Executing Report v4.8.1 INFO[12:19:53] Creating reports INFO[12:19:55] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:56] Executing Report v4.8.1 INFO[12:19:56] Creating reports INFO[12:19:58] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:19:58] Executing Report v4.8.1 INFO[12:19:58] Creating reports INFO[12:20:00] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:01] Executing Report v4.8.1 INFO[12:20:01] Creating reports INFO[12:20:03] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:04] Executing Report v4.8.1 INFO[12:20:04] Creating reports INFO[12:20:06] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:06] Executing Report v4.8.1 INFO[12:20:06] Creating reports INFO[12:20:09] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:09] Executing Report v4.8.1 INFO[12:20:09] Creating reports INFO[12:20:11] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:12] Executing Report v4.8.1 INFO[12:20:12] Creating reports INFO[12:20:13] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:14] Executing Report v4.8.1 INFO[12:20:14] Creating reports INFO[12:20:16] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:17] Executing Report v4.8.1 INFO[12:20:17] Creating reports INFO[12:20:19] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:19] Executing Report v4.8.1 INFO[12:20:19] Creating reports INFO[12:20:21] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:22] Executing Report v4.8.1 INFO[12:20:22] Creating reports INFO[12:20:24] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:25] Executing Report v4.8.1 INFO[12:20:25] Creating reports INFO[12:20:27] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:27] Executing Report v4.8.1 INFO[12:20:27] Creating reports INFO[12:20:29] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:30] Executing Report v4.8.1 INFO[12:20:30] Creating reports INFO[12:20:32] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:32] Executing Report v4.8.1 INFO[12:20:32] Creating reports INFO[12:20:34] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:35] Executing Report v4.8.1 INFO[12:20:35] Creating reports INFO[12:20:37] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:37] Executing Report v4.8.1 INFO[12:20:37] Creating reports INFO[12:20:39] Done Process 'PhilosopherReport' finished, exit code: 0 PhilosopherReport [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe report INFO[12:20:40] Executing Report v4.8.1 INFO[12:20:40] Creating reports INFO[12:20:42] Done Process 'PhilosopherReport' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:43] Executing Workspace v4.8.1 INFO[12:20:43] Removing workspace INFO[12:20:43] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:44] Executing Workspace v4.8.1 INFO[12:20:44] Removing workspace INFO[12:20:44] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:45] Executing Workspace v4.8.1 INFO[12:20:45] Removing workspace INFO[12:20:45] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:46] Executing Workspace v4.8.1 INFO[12:20:46] Removing workspace INFO[12:20:46] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:47] Executing Workspace v4.8.1 INFO[12:20:47] Removing workspace INFO[12:20:47] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:48] Executing Workspace v4.8.1 INFO[12:20:48] Removing workspace INFO[12:20:48] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:49] Executing Workspace v4.8.1 INFO[12:20:49] Removing workspace INFO[12:20:49] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:50] Executing Workspace v4.8.1 INFO[12:20:50] Removing workspace INFO[12:20:50] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:51] Executing Workspace v4.8.1 INFO[12:20:51] Removing workspace INFO[12:20:51] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:51] Executing Workspace v4.8.1 INFO[12:20:51] Removing workspace INFO[12:20:51] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:52] Executing Workspace v4.8.1 INFO[12:20:52] Removing workspace INFO[12:20:52] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:53] Executing Workspace v4.8.1 INFO[12:20:53] Removing workspace INFO[12:20:53] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:54] Executing Workspace v4.8.1 INFO[12:20:54] Removing workspace INFO[12:20:54] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:55] Executing Workspace v4.8.1 INFO[12:20:55] Removing workspace INFO[12:20:55] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:56] Executing Workspace v4.8.1 INFO[12:20:56] Removing workspace INFO[12:20:56] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:57] Executing Workspace v4.8.1 INFO[12:20:57] Removing workspace INFO[12:20:57] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:58] Executing Workspace v4.8.1 INFO[12:20:58] Removing workspace INFO[12:20:58] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:20:59] Executing Workspace v4.8.1 INFO[12:20:59] Removing workspace INFO[12:20:59] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:00] Executing Workspace v4.8.1 INFO[12:21:00] Removing workspace INFO[12:21:00] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:01] Executing Workspace v4.8.1 INFO[12:21:01] Removing workspace INFO[12:21:01] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:02] Executing Workspace v4.8.1 INFO[12:21:02] Removing workspace INFO[12:21:02] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:03] Executing Workspace v4.8.1 INFO[12:21:03] Removing workspace INFO[12:21:03] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:03] Executing Workspace v4.8.1 INFO[12:21:03] Removing workspace INFO[12:21:04] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:04] Executing Workspace v4.8.1 INFO[12:21:04] Removing workspace INFO[12:21:04] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:06] Executing Workspace v4.8.1 INFO[12:21:06] Removing workspace INFO[12:21:06] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:07] Executing Workspace v4.8.1 INFO[12:21:07] Removing workspace INFO[12:21:07] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:08] Executing Workspace v4.8.1 INFO[12:21:08] Removing workspace INFO[12:21:08] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:09] Executing Workspace v4.8.1 INFO[12:21:09] Removing workspace INFO[12:21:09] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:10] Executing Workspace v4.8.1 INFO[12:21:10] Removing workspace INFO[12:21:10] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:11] Executing Workspace v4.8.1 INFO[12:21:11] Removing workspace INFO[12:21:12] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:13] Executing Workspace v4.8.1 INFO[12:21:13] Removing workspace INFO[12:21:13] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:13] Executing Workspace v4.8.1 INFO[12:21:13] Removing workspace INFO[12:21:13] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:14] Executing Workspace v4.8.1 INFO[12:21:14] Removing workspace INFO[12:21:14] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:15] Executing Workspace v4.8.1 INFO[12:21:15] Removing workspace INFO[12:21:15] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:16] Executing Workspace v4.8.1 INFO[12:21:16] Removing workspace INFO[12:21:16] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:17] Executing Workspace v4.8.1 INFO[12:21:17] Removing workspace INFO[12:21:17] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:18] Executing Workspace v4.8.1 INFO[12:21:18] Removing workspace INFO[12:21:18] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:19] Executing Workspace v4.8.1 INFO[12:21:19] Removing workspace INFO[12:21:19] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:20] Executing Workspace v4.8.1 INFO[12:21:20] Removing workspace INFO[12:21:20] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:21] Executing Workspace v4.8.1 INFO[12:21:21] Removing workspace INFO[12:21:21] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:22] Executing Workspace v4.8.1 INFO[12:21:22] Removing workspace INFO[12:21:22] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:23] Executing Workspace v4.8.1 INFO[12:21:23] Removing workspace INFO[12:21:23] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:24] Executing Workspace v4.8.1 INFO[12:21:24] Removing workspace INFO[12:21:24] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:25] Executing Workspace v4.8.1 INFO[12:21:25] Removing workspace INFO[12:21:25] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:25] Executing Workspace v4.8.1 INFO[12:21:25] Removing workspace INFO[12:21:26] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:26] Executing Workspace v4.8.1 INFO[12:21:26] Removing workspace INFO[12:21:26] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:27] Executing Workspace v4.8.1 INFO[12:21:27] Removing workspace INFO[12:21:27] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:28] Executing Workspace v4.8.1 INFO[12:21:28] Removing workspace INFO[12:21:28] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:29] Executing Workspace v4.8.1 INFO[12:21:29] Removing workspace INFO[12:21:29] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:30] Executing Workspace v4.8.1 INFO[12:21:30] Removing workspace INFO[12:21:30] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:31] Executing Workspace v4.8.1 INFO[12:21:31] Removing workspace INFO[12:21:31] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:32] Executing Workspace v4.8.1 INFO[12:21:32] Removing workspace INFO[12:21:32] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:33] Executing Workspace v4.8.1 INFO[12:21:33] Removing workspace INFO[12:21:33] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:34] Executing Workspace v4.8.1 INFO[12:21:34] Removing workspace INFO[12:21:34] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:34] Executing Workspace v4.8.1 INFO[12:21:34] Removing workspace INFO[12:21:34] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:35] Executing Workspace v4.8.1 INFO[12:21:35] Removing workspace INFO[12:21:35] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:36] Executing Workspace v4.8.1 INFO[12:21:36] Removing workspace INFO[12:21:36] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:37] Executing Workspace v4.8.1 INFO[12:21:37] Removing workspace INFO[12:21:37] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:38] Executing Workspace v4.8.1 INFO[12:21:38] Removing workspace INFO[12:21:38] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:39] Executing Workspace v4.8.1 INFO[12:21:39] Removing workspace INFO[12:21:39] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:40] Executing Workspace v4.8.1 INFO[12:21:40] Removing workspace INFO[12:21:40] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:41] Executing Workspace v4.8.1 INFO[12:21:41] Removing workspace INFO[12:21:41] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:42] Executing Workspace v4.8.1 INFO[12:21:42] Removing workspace INFO[12:21:42] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:43] Executing Workspace v4.8.1 INFO[12:21:43] Removing workspace INFO[12:21:43] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:44] Executing Workspace v4.8.1 INFO[12:21:44] Removing workspace INFO[12:21:44] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:45] Executing Workspace v4.8.1 INFO[12:21:45] Removing workspace INFO[12:21:45] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:46] Executing Workspace v4.8.1 INFO[12:21:46] Removing workspace INFO[12:21:46] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:47] Executing Workspace v4.8.1 INFO[12:21:47] Removing workspace INFO[12:21:47] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:47] Executing Workspace v4.8.1 INFO[12:21:47] Removing workspace INFO[12:21:47] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:48] Executing Workspace v4.8.1 INFO[12:21:48] Removing workspace INFO[12:21:48] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:49] Executing Workspace v4.8.1 INFO[12:21:49] Removing workspace INFO[12:21:49] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:50] Executing Workspace v4.8.1 INFO[12:21:50] Removing workspace INFO[12:21:50] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:51] Executing Workspace v4.8.1 INFO[12:21:51] Removing workspace INFO[12:21:51] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:52] Executing Workspace v4.8.1 INFO[12:21:52] Removing workspace INFO[12:21:52] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:53] Executing Workspace v4.8.1 INFO[12:21:53] Removing workspace INFO[12:21:53] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:54] Executing Workspace v4.8.1 INFO[12:21:54] Removing workspace INFO[12:21:54] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:55] Executing Workspace v4.8.1 INFO[12:21:55] Removing workspace INFO[12:21:55] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:56] Executing Workspace v4.8.1 INFO[12:21:56] Removing workspace INFO[12:21:56] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:56] Executing Workspace v4.8.1 INFO[12:21:56] Removing workspace INFO[12:21:56] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:57] Executing Workspace v4.8.1 INFO[12:21:57] Removing workspace INFO[12:21:57] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:58] Executing Workspace v4.8.1 INFO[12:21:58] Removing workspace INFO[12:21:58] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:21:59] Executing Workspace v4.8.1 INFO[12:21:59] Removing workspace INFO[12:21:59] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:00] Executing Workspace v4.8.1 INFO[12:22:00] Removing workspace INFO[12:22:00] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:01] Executing Workspace v4.8.1 INFO[12:22:01] Removing workspace INFO[12:22:01] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:02] Executing Workspace v4.8.1 INFO[12:22:02] Removing workspace INFO[12:22:02] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:03] Executing Workspace v4.8.1 INFO[12:22:03] Removing workspace INFO[12:22:03] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:04] Executing Workspace v4.8.1 INFO[12:22:04] Removing workspace INFO[12:22:04] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:05] Executing Workspace v4.8.1 INFO[12:22:05] Removing workspace INFO[12:22:05] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:06] Executing Workspace v4.8.1 INFO[12:22:06] Removing workspace INFO[12:22:06] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:07] Executing Workspace v4.8.1 INFO[12:22:07] Removing workspace INFO[12:22:07] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:08] Executing Workspace v4.8.1 INFO[12:22:08] Removing workspace INFO[12:22:08] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:08] Executing Workspace v4.8.1 INFO[12:22:08] Removing workspace INFO[12:22:09] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:09] Executing Workspace v4.8.1 INFO[12:22:09] Removing workspace INFO[12:22:09] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:10] Executing Workspace v4.8.1 INFO[12:22:10] Removing workspace INFO[12:22:10] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:11] Executing Workspace v4.8.1 INFO[12:22:11] Removing workspace INFO[12:22:11] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:12] Executing Workspace v4.8.1 INFO[12:22:12] Removing workspace INFO[12:22:12] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:13] Executing Workspace v4.8.1 INFO[12:22:13] Removing workspace INFO[12:22:13] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:14] Executing Workspace v4.8.1 INFO[12:22:14] Removing workspace INFO[12:22:14] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:15] Executing Workspace v4.8.1 INFO[12:22:15] Removing workspace INFO[12:22:15] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:16] Executing Workspace v4.8.1 INFO[12:22:16] Removing workspace INFO[12:22:16] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:17] Executing Workspace v4.8.1 INFO[12:22:17] Removing workspace INFO[12:22:17] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:18] Executing Workspace v4.8.1 INFO[12:22:18] Removing workspace INFO[12:22:18] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:19] Executing Workspace v4.8.1 INFO[12:22:19] Removing workspace INFO[12:22:19] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:20] Executing Workspace v4.8.1 INFO[12:22:20] Removing workspace INFO[12:22:20] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:21] Executing Workspace v4.8.1 INFO[12:22:21] Removing workspace INFO[12:22:21] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:22] Executing Workspace v4.8.1 INFO[12:22:22] Removing workspace INFO[12:22:22] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:22] Executing Workspace v4.8.1 INFO[12:22:23] Removing workspace INFO[12:22:23] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:23] Executing Workspace v4.8.1 INFO[12:22:23] Removing workspace INFO[12:22:23] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:24] Executing Workspace v4.8.1 INFO[12:22:24] Removing workspace INFO[12:22:24] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:25] Executing Workspace v4.8.1 INFO[12:22:25] Removing workspace INFO[12:22:25] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:26] Executing Workspace v4.8.1 INFO[12:22:26] Removing workspace INFO[12:22:26] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:27] Executing Workspace v4.8.1 INFO[12:22:27] Removing workspace INFO[12:22:27] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:28] Executing Workspace v4.8.1 INFO[12:22:28] Removing workspace INFO[12:22:28] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:29] Executing Workspace v4.8.1 INFO[12:22:29] Removing workspace INFO[12:22:29] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:30] Executing Workspace v4.8.1 INFO[12:22:30] Removing workspace INFO[12:22:30] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:31] Executing Workspace v4.8.1 INFO[12:22:31] Removing workspace INFO[12:22:31] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:32] Executing Workspace v4.8.1 INFO[12:22:32] Removing workspace INFO[12:22:32] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:33] Executing Workspace v4.8.1 INFO[12:22:33] Removing workspace INFO[12:22:33] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:34] Executing Workspace v4.8.1 INFO[12:22:34] Removing workspace INFO[12:22:34] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:35] Executing Workspace v4.8.1 INFO[12:22:35] Removing workspace INFO[12:22:35] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:36] Executing Workspace v4.8.1 INFO[12:22:36] Removing workspace INFO[12:22:36] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:37] Executing Workspace v4.8.1 INFO[12:22:37] Removing workspace INFO[12:22:37] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:37] Executing Workspace v4.8.1 INFO[12:22:37] Removing workspace INFO[12:22:37] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:38] Executing Workspace v4.8.1 INFO[12:22:38] Removing workspace INFO[12:22:38] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:39] Executing Workspace v4.8.1 INFO[12:22:39] Removing workspace INFO[12:22:39] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:40] Executing Workspace v4.8.1 INFO[12:22:40] Removing workspace INFO[12:22:40] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:41] Executing Workspace v4.8.1 INFO[12:22:41] Removing workspace INFO[12:22:41] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:42] Executing Workspace v4.8.1 INFO[12:22:42] Removing workspace INFO[12:22:42] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:43] Executing Workspace v4.8.1 INFO[12:22:43] Removing workspace INFO[12:22:43] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:44] Executing Workspace v4.8.1 INFO[12:22:44] Removing workspace INFO[12:22:44] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:45] Executing Workspace v4.8.1 INFO[12:22:45] Removing workspace INFO[12:22:45] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:46] Executing Workspace v4.8.1 INFO[12:22:46] Removing workspace INFO[12:22:46] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:47] Executing Workspace v4.8.1 INFO[12:22:47] Removing workspace INFO[12:22:47] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:48] Executing Workspace v4.8.1 INFO[12:22:48] Removing workspace INFO[12:22:48] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:49] Executing Workspace v4.8.1 INFO[12:22:49] Removing workspace INFO[12:22:49] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:49] Executing Workspace v4.8.1 INFO[12:22:49] Removing workspace INFO[12:22:49] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:50] Executing Workspace v4.8.1 INFO[12:22:50] Removing workspace INFO[12:22:50] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:51] Executing Workspace v4.8.1 INFO[12:22:51] Removing workspace INFO[12:22:51] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:52] Executing Workspace v4.8.1 INFO[12:22:52] Removing workspace INFO[12:22:52] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:53] Executing Workspace v4.8.1 INFO[12:22:53] Removing workspace INFO[12:22:53] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:54] Executing Workspace v4.8.1 INFO[12:22:54] Removing workspace INFO[12:22:54] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:55] Executing Workspace v4.8.1 INFO[12:22:55] Removing workspace INFO[12:22:55] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:56] Executing Workspace v4.8.1 INFO[12:22:56] Removing workspace INFO[12:22:56] Done Process 'WorkspaceClean' finished, exit code: 0 WorkspaceClean [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81] D:\JAM\fragpipe\tools\philosopher_v4.8.1_windows_amd64\philosopher.exe workspace --clean --nocheck INFO[12:22:57] Executing Workspace v4.8.1 INFO[12:22:57] Removing workspace Process 'WorkspaceClean' finished, exit code: 0 IonQuant [Work dir: D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05] D:\JAM\fragpipe\jre\bin\java.exe -Xmx30G -Dlibs.bruker.dir="D:\JAM\fragpipe\tools\MSFragger-3.7\ext\bruker" -Dlibs.thermo.dir="D:\JAM\fragpipe\tools\MSFragger-3.7\ext\thermo" -cp "D:\JAM\fragpipe\tools\jfreechart-1.5.3.jar;D:\JAM\fragpipe\tools\batmass-io-1.28.9.jar;D:\JAM\fragpipe\tools\IonQuant-1.8.10.jar" ionquant.IonQuant --threads 7 --ionmobility 0 --minexps 1 --mbr 0 --maxlfq 1 --requantify 1 --mztol 10 --imtol 0.05 --rttol 0.4 --mbrmincorr 0 --mbrrttol 1 --mbrimtol 0.05 --mbrtoprun 10 --ionfdr 0.01 --proteinfdr 1 --peptidefdr 1 --normalization 1 --minisotopes 2 --minscans 3 --writeindex 0 --tp 0 --minfreq 0 --minions 1 --locprob 0.75 --uniqueness 0 --multidir . --filelist D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\filelist_ionquant.txt --modlist D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\modmasses_ionquant.txt IonQuant version IonQuant-1.8.10 Batmass-IO version 1.28.9 timsdata library version timsdata-2-21-0-4 (c) University of Michigan System OS: Windows 10, Architecture: AMD64 Java Info: 11.0.9.1, OpenJDK 64-Bit Server VM, AdoptOpenJDK JVM started with 30 GB memory 2023-03-08 12:22:58 [INFO] - Collecting variable modifications from all psm.tsv files... 2023-03-08 12:23:10 [INFO] - Collecting run names from all psm.tsv files... 2023-03-08 12:23:38 [INFO] - Parameters: 2023-03-08 12:23:38 [INFO] - threads = 7 2023-03-08 12:23:38 [INFO] - mztol = 10.0 2023-03-08 12:23:38 [INFO] - rttol = 0.4 2023-03-08 12:23:38 [INFO] - imtol = 0.05 2023-03-08 12:23:38 [INFO] - minisotopes = 2 2023-03-08 12:23:38 [INFO] - minscans = 3 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128\psm.tsv 2023-03-08 12:23:38 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99\psm.tsv 2023-03-08 12:23:39 [INFO] - psm = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9\psm.tsv 2023-03-08 12:23:39 [INFO] - multidir = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\.\ 2023-03-08 12:23:39 [INFO] - excludemods = 2023-03-08 12:23:39 [INFO] - minions = 1 2023-03-08 12:23:39 [INFO] - maxlfq = 1 2023-03-08 12:23:39 [INFO] - ibaq = 0 2023-03-08 12:23:39 [INFO] - normalization = 1 2023-03-08 12:23:39 [INFO] - minexps = 1 2023-03-08 12:23:39 [INFO] - minfreq = 0.0 2023-03-08 12:23:39 [INFO] - tp = 0 2023-03-08 12:23:39 [INFO] - mbr = 0 2023-03-08 12:23:39 [INFO] - mbrrttol = 1.0 2023-03-08 12:23:39 [INFO] - mbrimtol = 0.05 2023-03-08 12:23:39 [INFO] - mbrtoprun = 10 2023-03-08 12:23:39 [INFO] - mbrmincorr = 0.0 2023-03-08 12:23:39 [INFO] - ionmobility = 0 2023-03-08 12:23:39 [INFO] - ionfdr = 0.01 2023-03-08 12:23:39 [INFO] - peptidefdr = 1.0 2023-03-08 12:23:39 [INFO] - proteinfdr = 1.0 2023-03-08 12:23:39 [INFO] - light = 2023-03-08 12:23:39 [INFO] - medium = 2023-03-08 12:23:39 [INFO] - heavy = 2023-03-08 12:23:39 [INFO] - requantify = 0 2023-03-08 12:23:39 [INFO] - writeindex = 0 2023-03-08 12:23:39 [INFO] - locprob = 0.75 2023-03-08 12:23:39 [INFO] - uniqueness = 0 2023-03-08 12:23:39 [INFO] - filelist = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\filelist_ionquant.txt 2023-03-08 12:23:39 [INFO] - specdir = D:\JAM\Sylvain 2023-03-08 12:23:39 [INFO] - modlist = D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\modmasses_ionquant.txt 2023-03-08 12:23:39 [INFO] - mod masses: 2023-03-08 12:23:39 [INFO] - 15.9949 2023-03-08 12:23:39 [INFO] - 42.0106 2023-03-08 12:23:39 [INFO] - 57.02146 2023-03-08 12:23:39 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-79.raw... 2023-03-08 12:24:25 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-84-2nd.raw... 2023-03-08 12:24:40 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-72.raw... 2023-03-08 12:24:55 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-71.raw... 2023-03-08 12:25:11 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-74.raw... 2023-03-08 12:25:25 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-73.raw... 2023-03-08 12:25:41 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-76.raw... 2023-03-08 12:25:56 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-75.raw... 2023-03-08 12:26:11 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-78.raw... 2023-03-08 12:26:26 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-77.raw... 2023-03-08 12:26:42 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-140.raw... 2023-03-08 12:26:56 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-81.raw... 2023-03-08 12:27:11 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-80.raw... 2023-03-08 12:27:26 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-144.raw... 2023-03-08 12:27:42 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-143.raw... 2023-03-08 12:27:57 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-142.raw... 2023-03-08 12:28:12 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-141.raw... 2023-03-08 12:28:27 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-69.raw... 2023-03-08 12:28:42 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-68.raw... 2023-03-08 12:28:57 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-139.raw... 2023-03-08 12:29:12 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-138.raw... 2023-03-08 12:29:27 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-8.raw... 2023-03-08 12:29:43 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-9.raw... 2023-03-08 12:29:58 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-6.raw... 2023-03-08 12:30:15 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-7.raw... 2023-03-08 12:30:32 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-67.raw... 2023-03-08 12:30:46 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-66-2nd.raw... 2023-03-08 12:31:01 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-1.raw... 2023-03-08 12:31:16 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-4.raw... 2023-03-08 12:31:33 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-5.raw... 2023-03-08 12:31:48 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-2.raw... 2023-03-08 12:32:04 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-70.raw... 2023-03-08 12:32:20 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-3.raw... 2023-03-08 12:32:36 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-137.raw... 2023-03-08 12:32:51 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-136.raw... 2023-03-08 12:33:06 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-135.raw... 2023-03-08 12:33:20 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-134.raw... 2023-03-08 12:33:35 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-133.raw... 2023-03-08 12:33:53 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-132.raw... 2023-03-08 12:34:10 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-131.raw... 2023-03-08 12:34:28 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-130.raw... 2023-03-08 12:34:45 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-57.raw... 2023-03-08 12:35:04 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-50.raw... 2023-03-08 12:35:22 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-62-2nd.raw... 2023-03-08 12:35:39 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-52.raw... 2023-03-08 12:35:56 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-51.raw... 2023-03-08 12:36:14 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-54.raw... 2023-03-08 12:36:33 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-53.raw... 2023-03-08 12:36:51 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-56.raw... 2023-03-08 12:37:15 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-55.raw... 2023-03-08 12:37:34 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-47.raw... 2023-03-08 12:37:53 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-46.raw... 2023-03-08 12:38:12 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-49.raw... 2023-03-08 12:38:28 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-48.raw... 2023-03-08 12:38:45 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-41.raw... 2023-03-08 12:39:01 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-40.raw... 2023-03-08 12:39:17 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-43.raw... 2023-03-08 12:39:34 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-42.raw... 2023-03-08 12:39:49 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-64-2nd.raw... 2023-03-08 12:40:05 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-45.raw... 2023-03-08 12:40:21 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-44.raw... 2023-03-08 12:40:38 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-58-2nd.raw... 2023-03-08 12:40:53 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-36.raw... 2023-03-08 12:41:09 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-35.raw... 2023-03-08 12:41:27 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-38.raw... 2023-03-08 12:41:46 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-109.raw... 2023-03-08 12:42:04 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-37.raw... 2023-03-08 12:42:24 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-108.raw... 2023-03-08 12:42:45 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-107.raw... 2023-03-08 12:43:03 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-39.raw... 2023-03-08 12:43:23 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-106.raw... 2023-03-08 12:43:41 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-59-2nd.raw... 2023-03-08 12:44:00 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-105.raw... 2023-03-08 12:44:19 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-30.raw... 2023-03-08 12:44:40 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-32.raw... 2023-03-08 12:45:00 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-31.raw... 2023-03-08 12:45:20 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-34.raw... 2023-03-08 12:45:39 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-33.raw... 2023-03-08 12:45:56 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-104.raw... 2023-03-08 12:46:14 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-103.raw... 2023-03-08 12:46:32 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-102.raw... 2023-03-08 12:46:50 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-101.raw... 2023-03-08 12:47:07 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-100.raw... 2023-03-08 12:47:25 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-25.raw... 2023-03-08 12:47:43 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-65-2nd.raw... 2023-03-08 12:48:01 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-24.raw... 2023-03-08 12:48:19 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-27.raw... 2023-03-08 12:48:37 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-60-2nd.raw... 2023-03-08 12:48:53 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-26.raw... 2023-03-08 12:49:11 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-29.raw... 2023-03-08 12:49:30 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-28.raw... 2023-03-08 12:49:49 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-21.raw... 2023-03-08 12:50:06 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-20.raw... 2023-03-08 12:50:22 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-23.raw... 2023-03-08 12:50:39 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-22.raw... 2023-03-08 12:50:55 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-14.raw... 2023-03-08 12:51:11 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-13.raw... 2023-03-08 12:51:27 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-16.raw... 2023-03-08 12:51:44 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-15.raw... 2023-03-08 12:51:59 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-18.raw... 2023-03-08 12:52:16 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-129.raw... 2023-03-08 12:52:31 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-17.raw... 2023-03-08 12:52:48 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-128.raw... 2023-03-08 12:53:04 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-127.raw... 2023-03-08 12:53:21 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-19.raw... 2023-03-08 12:53:38 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-94.raw... 2023-03-08 12:53:54 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-93.raw... 2023-03-08 12:54:10 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-96.raw... 2023-03-08 12:54:26 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-95.raw... 2023-03-08 12:54:44 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-10.raw... 2023-03-08 12:55:04 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-98.raw... 2023-03-08 12:55:19 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-97.raw... 2023-03-08 12:55:34 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-12.raw... 2023-03-08 12:55:50 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-11.raw... 2023-03-08 12:56:04 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-99.raw... 2023-03-08 12:56:20 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-126.raw... 2023-03-08 12:56:35 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-125.raw... 2023-03-08 12:56:50 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-123.raw... 2023-03-08 12:57:04 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-61-2nd.raw... 2023-03-08 12:57:20 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-122.raw... 2023-03-08 12:57:34 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-121.raw... 2023-03-08 12:57:49 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-120.raw... 2023-03-08 12:58:06 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-119.raw... 2023-03-08 12:58:22 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-118.raw... 2023-03-08 12:58:39 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-117.raw... 2023-03-08 12:58:55 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-116.raw... 2023-03-08 12:59:11 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-83.raw... 2023-03-08 12:59:28 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-82.raw... 2023-03-08 12:59:44 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-85.raw... 2023-03-08 13:00:01 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-87.raw... 2023-03-08 13:00:19 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-86.raw... 2023-03-08 13:00:35 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-89.raw... 2023-03-08 13:00:51 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-88.raw... 2023-03-08 13:01:06 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-90.raw... 2023-03-08 13:01:26 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-92.raw... 2023-03-08 13:01:42 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-91.raw... 2023-03-08 13:01:57 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-115.raw... 2023-03-08 13:02:12 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-114.raw... 2023-03-08 13:02:28 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-113.raw... 2023-03-08 13:02:42 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-112.raw... 2023-03-08 13:02:57 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-111.raw... 2023-03-08 13:03:12 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-110.raw... 2023-03-08 13:03:27 [INFO] - Checking D:\JAM\Sylvain\S22049-Arjun-63-2nd.raw... 2023-03-08 13:03:43 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-79.raw... 2023-03-08 13:04:09 [INFO] - Building index... 2023-03-08 13:04:09 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_79\psm.tsv.... 2023-03-08 13:04:09 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:04:09 [INFO] - Quantifying... 2023-03-08 13:04:10 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-84-2nd.raw... 2023-03-08 13:04:35 [INFO] - Building index... 2023-03-08 13:04:35 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_84_2nd\psm.tsv.... 2023-03-08 13:04:35 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:04:35 [INFO] - Quantifying... 2023-03-08 13:04:36 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-72.raw... 2023-03-08 13:05:00 [INFO] - Building index... 2023-03-08 13:05:00 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_72\psm.tsv.... 2023-03-08 13:05:01 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:05:01 [INFO] - Quantifying... 2023-03-08 13:05:01 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-71.raw... 2023-03-08 13:05:26 [INFO] - Building index... 2023-03-08 13:05:26 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_71\psm.tsv.... 2023-03-08 13:05:26 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:05:26 [INFO] - Quantifying... 2023-03-08 13:05:27 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-74.raw... 2023-03-08 13:05:49 [INFO] - Building index... 2023-03-08 13:05:49 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_74\psm.tsv.... 2023-03-08 13:05:50 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:05:50 [INFO] - Quantifying... 2023-03-08 13:05:50 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-73.raw... 2023-03-08 13:06:12 [INFO] - Building index... 2023-03-08 13:06:12 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_73\psm.tsv.... 2023-03-08 13:06:13 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:06:13 [INFO] - Quantifying... 2023-03-08 13:06:13 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-76.raw... 2023-03-08 13:06:36 [INFO] - Building index... 2023-03-08 13:06:36 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_76\psm.tsv.... 2023-03-08 13:06:36 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:06:36 [INFO] - Quantifying... 2023-03-08 13:06:37 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-75.raw... 2023-03-08 13:06:59 [INFO] - Building index... 2023-03-08 13:06:59 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_75\psm.tsv.... 2023-03-08 13:06:59 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:06:59 [INFO] - Quantifying... 2023-03-08 13:07:00 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-78.raw... 2023-03-08 13:07:23 [INFO] - Building index... 2023-03-08 13:07:23 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_78\psm.tsv.... 2023-03-08 13:07:23 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:07:23 [INFO] - Quantifying... 2023-03-08 13:07:23 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-77.raw... 2023-03-08 13:07:46 [INFO] - Building index... 2023-03-08 13:07:46 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_77\psm.tsv.... 2023-03-08 13:07:46 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:07:46 [INFO] - Quantifying... 2023-03-08 13:07:46 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-140.raw... 2023-03-08 13:08:11 [INFO] - Building index... 2023-03-08 13:08:11 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_140\psm.tsv.... 2023-03-08 13:08:11 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:08:11 [INFO] - Quantifying... 2023-03-08 13:08:11 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-81.raw... 2023-03-08 13:08:38 [INFO] - Building index... 2023-03-08 13:08:38 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_81\psm.tsv.... 2023-03-08 13:08:38 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:08:38 [INFO] - Quantifying... 2023-03-08 13:08:39 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-80.raw... 2023-03-08 13:09:01 [INFO] - Building index... 2023-03-08 13:09:01 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_80\psm.tsv.... 2023-03-08 13:09:01 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:09:01 [INFO] - Quantifying... 2023-03-08 13:09:02 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-144.raw... 2023-03-08 13:09:24 [INFO] - Building index... 2023-03-08 13:09:24 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_144\psm.tsv.... 2023-03-08 13:09:24 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:09:24 [INFO] - Quantifying... 2023-03-08 13:09:25 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-143.raw... 2023-03-08 13:09:46 [INFO] - Building index... 2023-03-08 13:09:46 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_143\psm.tsv.... 2023-03-08 13:09:46 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:09:46 [INFO] - Quantifying... 2023-03-08 13:09:47 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-142.raw... 2023-03-08 13:10:09 [INFO] - Building index... 2023-03-08 13:10:09 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_142\psm.tsv.... 2023-03-08 13:10:09 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:10:09 [INFO] - Quantifying... 2023-03-08 13:10:10 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-141.raw... 2023-03-08 13:10:33 [INFO] - Building index... 2023-03-08 13:10:33 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_141\psm.tsv.... 2023-03-08 13:10:33 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:10:33 [INFO] - Quantifying... 2023-03-08 13:10:34 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-69.raw... 2023-03-08 13:10:57 [INFO] - Building index... 2023-03-08 13:10:57 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_69\psm.tsv.... 2023-03-08 13:10:57 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:10:57 [INFO] - Quantifying... 2023-03-08 13:10:58 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-68.raw... 2023-03-08 13:11:22 [INFO] - Building index... 2023-03-08 13:11:22 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_68\psm.tsv.... 2023-03-08 13:11:23 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:11:23 [INFO] - Quantifying... 2023-03-08 13:11:23 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-139.raw... 2023-03-08 13:11:45 [INFO] - Building index... 2023-03-08 13:11:46 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_139\psm.tsv.... 2023-03-08 13:11:46 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:11:46 [INFO] - Quantifying... 2023-03-08 13:11:46 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-138.raw... 2023-03-08 13:12:09 [INFO] - Building index... 2023-03-08 13:12:09 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_138\psm.tsv.... 2023-03-08 13:12:09 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:12:09 [INFO] - Quantifying... 2023-03-08 13:12:09 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-8.raw... 2023-03-08 13:12:35 [INFO] - Building index... 2023-03-08 13:12:35 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_8\psm.tsv.... 2023-03-08 13:12:35 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:12:35 [INFO] - Quantifying... 2023-03-08 13:12:36 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-9.raw... 2023-03-08 13:13:01 [INFO] - Building index... 2023-03-08 13:13:01 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_9\psm.tsv.... 2023-03-08 13:13:01 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:13:01 [INFO] - Quantifying... 2023-03-08 13:13:02 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-6.raw... 2023-03-08 13:13:27 [INFO] - Building index... 2023-03-08 13:13:27 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_6\psm.tsv.... 2023-03-08 13:13:27 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:13:27 [INFO] - Quantifying... 2023-03-08 13:13:28 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-7.raw... 2023-03-08 13:13:57 [INFO] - Building index... 2023-03-08 13:13:57 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_7\psm.tsv.... 2023-03-08 13:13:57 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:13:57 [INFO] - Quantifying... 2023-03-08 13:13:58 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-67.raw... 2023-03-08 13:14:21 [INFO] - Building index... 2023-03-08 13:14:21 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_67\psm.tsv.... 2023-03-08 13:14:21 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:14:21 [INFO] - Quantifying... 2023-03-08 13:14:22 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-66-2nd.raw... 2023-03-08 13:14:45 [INFO] - Building index... 2023-03-08 13:14:45 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_66_2nd\psm.tsv.... 2023-03-08 13:14:45 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:14:45 [INFO] - Quantifying... 2023-03-08 13:14:46 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-1.raw... 2023-03-08 13:15:09 [INFO] - Building index... 2023-03-08 13:15:09 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_1\psm.tsv.... 2023-03-08 13:15:09 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:15:09 [INFO] - Quantifying... 2023-03-08 13:15:10 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-4.raw... 2023-03-08 13:15:35 [INFO] - Building index... 2023-03-08 13:15:35 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_4\psm.tsv.... 2023-03-08 13:15:35 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:15:35 [INFO] - Quantifying... 2023-03-08 13:15:35 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-5.raw... 2023-03-08 13:15:59 [INFO] - Building index... 2023-03-08 13:15:59 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_5\psm.tsv.... 2023-03-08 13:15:59 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:15:59 [INFO] - Quantifying... 2023-03-08 13:16:00 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-2.raw... 2023-03-08 13:16:26 [INFO] - Building index... 2023-03-08 13:16:27 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_2\psm.tsv.... 2023-03-08 13:16:27 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:16:27 [INFO] - Quantifying... 2023-03-08 13:16:28 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-70.raw... 2023-03-08 13:16:53 [INFO] - Building index... 2023-03-08 13:16:53 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_70\psm.tsv.... 2023-03-08 13:16:53 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:16:53 [INFO] - Quantifying... 2023-03-08 13:16:54 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-3.raw... 2023-03-08 13:17:20 [INFO] - Building index... 2023-03-08 13:17:20 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_3\psm.tsv.... 2023-03-08 13:17:20 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:17:20 [INFO] - Quantifying... 2023-03-08 13:17:21 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-137.raw... 2023-03-08 13:17:43 [INFO] - Building index... 2023-03-08 13:17:43 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_137\psm.tsv.... 2023-03-08 13:17:43 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:17:43 [INFO] - Quantifying... 2023-03-08 13:17:43 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-136.raw... 2023-03-08 13:18:06 [INFO] - Building index... 2023-03-08 13:18:06 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_136\psm.tsv.... 2023-03-08 13:18:06 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:18:06 [INFO] - Quantifying... 2023-03-08 13:18:07 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-135.raw... 2023-03-08 13:18:27 [INFO] - Building index... 2023-03-08 13:18:27 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_135\psm.tsv.... 2023-03-08 13:18:27 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:18:27 [INFO] - Quantifying... 2023-03-08 13:18:27 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-134.raw... 2023-03-08 13:18:47 [INFO] - Building index... 2023-03-08 13:18:47 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_134\psm.tsv.... 2023-03-08 13:18:47 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:18:47 [INFO] - Quantifying... 2023-03-08 13:18:48 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-133.raw... 2023-03-08 13:19:10 [INFO] - Building index... 2023-03-08 13:19:11 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_133\psm.tsv.... 2023-03-08 13:19:11 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:19:11 [INFO] - Quantifying... 2023-03-08 13:19:11 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-132.raw... 2023-03-08 13:19:34 [INFO] - Building index... 2023-03-08 13:19:34 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_132\psm.tsv.... 2023-03-08 13:19:34 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:19:34 [INFO] - Quantifying... 2023-03-08 13:19:35 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-131.raw... 2023-03-08 13:19:58 [INFO] - Building index... 2023-03-08 13:19:58 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_131\psm.tsv.... 2023-03-08 13:19:59 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:19:59 [INFO] - Quantifying... 2023-03-08 13:19:59 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-130.raw... 2023-03-08 13:20:22 [INFO] - Building index... 2023-03-08 13:20:22 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_130\psm.tsv.... 2023-03-08 13:20:23 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:20:23 [INFO] - Quantifying... 2023-03-08 13:20:23 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-57.raw... 2023-03-08 13:20:49 [INFO] - Building index... 2023-03-08 13:20:49 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_57\psm.tsv.... 2023-03-08 13:20:49 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:20:49 [INFO] - Quantifying... 2023-03-08 13:20:49 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-50.raw... 2023-03-08 13:21:14 [INFO] - Building index... 2023-03-08 13:21:14 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_50\psm.tsv.... 2023-03-08 13:21:15 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:21:15 [INFO] - Quantifying... 2023-03-08 13:21:15 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-62-2nd.raw... 2023-03-08 13:21:40 [INFO] - Building index... 2023-03-08 13:21:40 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_62_2nd\psm.tsv.... 2023-03-08 13:21:40 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:21:40 [INFO] - Quantifying... 2023-03-08 13:21:40 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-52.raw... 2023-03-08 13:22:06 [INFO] - Building index... 2023-03-08 13:22:06 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_52\psm.tsv.... 2023-03-08 13:22:06 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:22:06 [INFO] - Quantifying... 2023-03-08 13:22:07 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-51.raw... 2023-03-08 13:22:32 [INFO] - Building index... 2023-03-08 13:22:32 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_51\psm.tsv.... 2023-03-08 13:22:32 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:22:32 [INFO] - Quantifying... 2023-03-08 13:22:33 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-54.raw... 2023-03-08 13:22:58 [INFO] - Building index... 2023-03-08 13:22:58 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_54\psm.tsv.... 2023-03-08 13:22:59 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:22:59 [INFO] - Quantifying... 2023-03-08 13:22:59 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-53.raw... 2023-03-08 13:23:24 [INFO] - Building index... 2023-03-08 13:23:24 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_53\psm.tsv.... 2023-03-08 13:23:25 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:23:25 [INFO] - Quantifying... 2023-03-08 13:23:26 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-56.raw... 2023-03-08 13:23:51 [INFO] - Building index... 2023-03-08 13:23:51 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_56\psm.tsv.... 2023-03-08 13:23:51 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:23:51 [INFO] - Quantifying... 2023-03-08 13:23:52 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-55.raw... 2023-03-08 13:24:17 [INFO] - Building index... 2023-03-08 13:24:17 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_55\psm.tsv.... 2023-03-08 13:24:17 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:24:17 [INFO] - Quantifying... 2023-03-08 13:24:18 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-47.raw... 2023-03-08 13:24:43 [INFO] - Building index... 2023-03-08 13:24:43 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_47\psm.tsv.... 2023-03-08 13:24:43 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:24:43 [INFO] - Quantifying... 2023-03-08 13:24:44 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-46.raw... 2023-03-08 13:25:10 [INFO] - Building index... 2023-03-08 13:25:10 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_46\psm.tsv.... 2023-03-08 13:25:10 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:25:10 [INFO] - Quantifying... 2023-03-08 13:25:11 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-49.raw... 2023-03-08 13:25:41 [INFO] - Building index... 2023-03-08 13:25:41 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_49\psm.tsv.... 2023-03-08 13:25:42 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:25:42 [INFO] - Quantifying... 2023-03-08 13:25:42 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-48.raw... 2023-03-08 13:26:07 [INFO] - Building index... 2023-03-08 13:26:07 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_48\psm.tsv.... 2023-03-08 13:26:07 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:26:07 [INFO] - Quantifying... 2023-03-08 13:26:07 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-41.raw... 2023-03-08 13:26:32 [INFO] - Building index... 2023-03-08 13:26:32 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_41\psm.tsv.... 2023-03-08 13:26:32 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:26:32 [INFO] - Quantifying... 2023-03-08 13:26:32 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-40.raw... 2023-03-08 13:26:56 [INFO] - Building index... 2023-03-08 13:26:56 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_40\psm.tsv.... 2023-03-08 13:26:57 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:26:57 [INFO] - Quantifying... 2023-03-08 13:26:57 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-43.raw... 2023-03-08 13:27:23 [INFO] - Building index... 2023-03-08 13:27:23 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_43\psm.tsv.... 2023-03-08 13:27:23 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:27:23 [INFO] - Quantifying... 2023-03-08 13:27:24 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-42.raw... 2023-03-08 13:27:49 [INFO] - Building index... 2023-03-08 13:27:49 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_42\psm.tsv.... 2023-03-08 13:27:49 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:27:49 [INFO] - Quantifying... 2023-03-08 13:27:50 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-64-2nd.raw... 2023-03-08 13:28:13 [INFO] - Building index... 2023-03-08 13:28:13 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_64_2nd\psm.tsv.... 2023-03-08 13:28:14 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:28:14 [INFO] - Quantifying... 2023-03-08 13:28:14 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-45.raw... 2023-03-08 13:28:39 [INFO] - Building index... 2023-03-08 13:28:39 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_45\psm.tsv.... 2023-03-08 13:28:40 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:28:40 [INFO] - Quantifying... 2023-03-08 13:28:40 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-44.raw... 2023-03-08 13:29:05 [INFO] - Building index... 2023-03-08 13:29:05 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_44\psm.tsv.... 2023-03-08 13:29:06 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:29:06 [INFO] - Quantifying... 2023-03-08 13:29:06 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-58-2nd.raw... 2023-03-08 13:29:30 [INFO] - Building index... 2023-03-08 13:29:30 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_58_2nd\psm.tsv.... 2023-03-08 13:29:30 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:29:30 [INFO] - Quantifying... 2023-03-08 13:29:31 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-36.raw... 2023-03-08 13:29:55 [INFO] - Building index... 2023-03-08 13:29:55 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_36\psm.tsv.... 2023-03-08 13:29:55 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:29:55 [INFO] - Quantifying... 2023-03-08 13:29:56 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-35.raw... 2023-03-08 13:30:21 [INFO] - Building index... 2023-03-08 13:30:21 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_35\psm.tsv.... 2023-03-08 13:30:22 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:30:22 [INFO] - Quantifying... 2023-03-08 13:30:22 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-38.raw... 2023-03-08 13:30:49 [INFO] - Building index... 2023-03-08 13:30:49 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_38\psm.tsv.... 2023-03-08 13:30:49 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:30:49 [INFO] - Quantifying... 2023-03-08 13:30:50 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-109.raw... 2023-03-08 13:31:14 [INFO] - Building index... 2023-03-08 13:31:14 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_109\psm.tsv.... 2023-03-08 13:31:14 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:31:14 [INFO] - Quantifying... 2023-03-08 13:31:15 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-37.raw... 2023-03-08 13:31:45 [INFO] - Building index... 2023-03-08 13:31:45 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_37\psm.tsv.... 2023-03-08 13:31:45 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:31:45 [INFO] - Quantifying... 2023-03-08 13:31:45 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-108.raw... 2023-03-08 13:32:12 [INFO] - Building index... 2023-03-08 13:32:12 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_108\psm.tsv.... 2023-03-08 13:32:13 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:32:13 [INFO] - Quantifying... 2023-03-08 13:32:13 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-107.raw... 2023-03-08 13:32:39 [INFO] - Building index... 2023-03-08 13:32:39 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_107\psm.tsv.... 2023-03-08 13:32:39 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:32:39 [INFO] - Quantifying... 2023-03-08 13:32:39 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-39.raw... 2023-03-08 13:33:05 [INFO] - Building index... 2023-03-08 13:33:05 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_39\psm.tsv.... 2023-03-08 13:33:05 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:33:05 [INFO] - Quantifying... 2023-03-08 13:33:06 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-106.raw... 2023-03-08 13:33:29 [INFO] - Building index... 2023-03-08 13:33:29 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_106\psm.tsv.... 2023-03-08 13:33:30 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:33:30 [INFO] - Quantifying... 2023-03-08 13:33:30 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-59-2nd.raw... 2023-03-08 13:33:54 [INFO] - Building index... 2023-03-08 13:33:54 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_59_2nd\psm.tsv.... 2023-03-08 13:33:55 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:33:55 [INFO] - Quantifying... 2023-03-08 13:33:55 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-105.raw... 2023-03-08 13:34:18 [INFO] - Building index... 2023-03-08 13:34:18 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_105\psm.tsv.... 2023-03-08 13:34:19 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:34:19 [INFO] - Quantifying... 2023-03-08 13:34:19 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-30.raw... 2023-03-08 13:34:46 [INFO] - Building index... 2023-03-08 13:34:46 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_30\psm.tsv.... 2023-03-08 13:34:46 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:34:46 [INFO] - Quantifying... 2023-03-08 13:34:47 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-32.raw... 2023-03-08 13:35:16 [INFO] - Building index... 2023-03-08 13:35:16 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_32\psm.tsv.... 2023-03-08 13:35:16 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:35:16 [INFO] - Quantifying... 2023-03-08 13:35:17 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-31.raw... 2023-03-08 13:35:40 [INFO] - Building index... 2023-03-08 13:35:40 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_31\psm.tsv.... 2023-03-08 13:35:40 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:35:40 [INFO] - Quantifying... 2023-03-08 13:35:41 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-34.raw... 2023-03-08 13:36:06 [INFO] - Building index... 2023-03-08 13:36:06 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_34\psm.tsv.... 2023-03-08 13:36:06 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:36:06 [INFO] - Quantifying... 2023-03-08 13:36:07 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-33.raw... 2023-03-08 13:36:31 [INFO] - Building index... 2023-03-08 13:36:31 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_33\psm.tsv.... 2023-03-08 13:36:31 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:36:31 [INFO] - Quantifying... 2023-03-08 13:36:32 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-104.raw... 2023-03-08 13:36:54 [INFO] - Building index... 2023-03-08 13:36:54 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_104\psm.tsv.... 2023-03-08 13:36:54 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:36:54 [INFO] - Quantifying... 2023-03-08 13:36:55 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-103.raw... 2023-03-08 13:37:18 [INFO] - Building index... 2023-03-08 13:37:18 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_103\psm.tsv.... 2023-03-08 13:37:19 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:37:19 [INFO] - Quantifying... 2023-03-08 13:37:19 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-102.raw... 2023-03-08 13:37:41 [INFO] - Building index... 2023-03-08 13:37:41 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_102\psm.tsv.... 2023-03-08 13:37:41 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:37:41 [INFO] - Quantifying... 2023-03-08 13:37:42 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-101.raw... 2023-03-08 13:38:04 [INFO] - Building index... 2023-03-08 13:38:04 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_101\psm.tsv.... 2023-03-08 13:38:04 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:38:04 [INFO] - Quantifying... 2023-03-08 13:38:05 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-100.raw... 2023-03-08 13:38:28 [INFO] - Building index... 2023-03-08 13:38:28 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_100\psm.tsv.... 2023-03-08 13:38:28 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:38:28 [INFO] - Quantifying... 2023-03-08 13:38:28 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-25.raw... 2023-03-08 13:38:53 [INFO] - Building index... 2023-03-08 13:38:54 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_25\psm.tsv.... 2023-03-08 13:38:54 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:38:54 [INFO] - Quantifying... 2023-03-08 13:38:54 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-65-2nd.raw... 2023-03-08 13:39:18 [INFO] - Building index... 2023-03-08 13:39:19 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_65_2nd\psm.tsv.... 2023-03-08 13:39:19 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:39:19 [INFO] - Quantifying... 2023-03-08 13:39:19 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-24.raw... 2023-03-08 13:39:46 [INFO] - Building index... 2023-03-08 13:39:46 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_24\psm.tsv.... 2023-03-08 13:39:46 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:39:46 [INFO] - Quantifying... 2023-03-08 13:39:47 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-27.raw... 2023-03-08 13:40:14 [INFO] - Building index... 2023-03-08 13:40:14 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_27\psm.tsv.... 2023-03-08 13:40:14 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:40:14 [INFO] - Quantifying... 2023-03-08 13:40:15 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-60-2nd.raw... 2023-03-08 13:40:38 [INFO] - Building index... 2023-03-08 13:40:39 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_60_2nd\psm.tsv.... 2023-03-08 13:40:39 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:40:39 [INFO] - Quantifying... 2023-03-08 13:40:39 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-26.raw... 2023-03-08 13:41:06 [INFO] - Building index... 2023-03-08 13:41:06 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_26\psm.tsv.... 2023-03-08 13:41:06 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:41:06 [INFO] - Quantifying... 2023-03-08 13:41:07 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-29.raw... 2023-03-08 13:41:34 [INFO] - Building index... 2023-03-08 13:41:34 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_29\psm.tsv.... 2023-03-08 13:41:35 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:41:35 [INFO] - Quantifying... 2023-03-08 13:41:35 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-28.raw... 2023-03-08 13:42:02 [INFO] - Building index... 2023-03-08 13:42:02 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_28\psm.tsv.... 2023-03-08 13:42:02 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:42:02 [INFO] - Quantifying... 2023-03-08 13:42:02 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-21.raw... 2023-03-08 13:42:27 [INFO] - Building index... 2023-03-08 13:42:27 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_21\psm.tsv.... 2023-03-08 13:42:27 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:42:27 [INFO] - Quantifying... 2023-03-08 13:42:28 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-20.raw... 2023-03-08 13:42:55 [INFO] - Building index... 2023-03-08 13:42:55 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_20\psm.tsv.... 2023-03-08 13:42:55 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:42:55 [INFO] - Quantifying... 2023-03-08 13:42:56 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-23.raw... 2023-03-08 13:43:21 [INFO] - Building index... 2023-03-08 13:43:21 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_23\psm.tsv.... 2023-03-08 13:43:21 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:43:21 [INFO] - Quantifying... 2023-03-08 13:43:22 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-22.raw... 2023-03-08 13:43:46 [INFO] - Building index... 2023-03-08 13:43:46 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_22\psm.tsv.... 2023-03-08 13:43:46 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:43:46 [INFO] - Quantifying... 2023-03-08 13:43:47 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-14.raw... 2023-03-08 13:44:10 [INFO] - Building index... 2023-03-08 13:44:10 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_14\psm.tsv.... 2023-03-08 13:44:10 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:44:10 [INFO] - Quantifying... 2023-03-08 13:44:11 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-13.raw... 2023-03-08 13:44:34 [INFO] - Building index... 2023-03-08 13:44:34 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_13\psm.tsv.... 2023-03-08 13:44:34 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:44:34 [INFO] - Quantifying... 2023-03-08 13:44:35 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-16.raw... 2023-03-08 13:45:01 [INFO] - Building index... 2023-03-08 13:45:01 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_16\psm.tsv.... 2023-03-08 13:45:01 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:45:01 [INFO] - Quantifying... 2023-03-08 13:45:02 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-15.raw... 2023-03-08 13:45:27 [INFO] - Building index... 2023-03-08 13:45:27 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_15\psm.tsv.... 2023-03-08 13:45:27 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:45:27 [INFO] - Quantifying... 2023-03-08 13:45:28 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-18.raw... 2023-03-08 13:45:52 [INFO] - Building index... 2023-03-08 13:45:52 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_18\psm.tsv.... 2023-03-08 13:45:52 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:45:52 [INFO] - Quantifying... 2023-03-08 13:45:53 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-129.raw... 2023-03-08 13:46:14 [INFO] - Building index... 2023-03-08 13:46:14 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_129\psm.tsv.... 2023-03-08 13:46:15 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:46:15 [INFO] - Quantifying... 2023-03-08 13:46:15 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-17.raw... 2023-03-08 13:46:38 [INFO] - Building index... 2023-03-08 13:46:38 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_17\psm.tsv.... 2023-03-08 13:46:39 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:46:39 [INFO] - Quantifying... 2023-03-08 13:46:40 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-128.raw... 2023-03-08 13:47:02 [INFO] - Building index... 2023-03-08 13:47:02 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_128\psm.tsv.... 2023-03-08 13:47:02 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:47:02 [INFO] - Quantifying... 2023-03-08 13:47:02 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-127.raw... 2023-03-08 13:47:25 [INFO] - Building index... 2023-03-08 13:47:25 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_127\psm.tsv.... 2023-03-08 13:47:25 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:47:25 [INFO] - Quantifying... 2023-03-08 13:47:25 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-19.raw... 2023-03-08 13:47:51 [INFO] - Building index... 2023-03-08 13:47:51 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_19\psm.tsv.... 2023-03-08 13:47:51 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:47:51 [INFO] - Quantifying... 2023-03-08 13:47:52 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-94.raw... 2023-03-08 13:48:15 [INFO] - Building index... 2023-03-08 13:48:15 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_94\psm.tsv.... 2023-03-08 13:48:15 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:48:15 [INFO] - Quantifying... 2023-03-08 13:48:16 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-93.raw... 2023-03-08 13:48:39 [INFO] - Building index... 2023-03-08 13:48:39 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_93\psm.tsv.... 2023-03-08 13:48:39 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:48:39 [INFO] - Quantifying... 2023-03-08 13:48:40 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-96.raw... 2023-03-08 13:49:03 [INFO] - Building index... 2023-03-08 13:49:03 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_96\psm.tsv.... 2023-03-08 13:49:03 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:49:03 [INFO] - Quantifying... 2023-03-08 13:49:04 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-95.raw... 2023-03-08 13:49:27 [INFO] - Building index... 2023-03-08 13:49:27 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_95\psm.tsv.... 2023-03-08 13:49:27 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:49:27 [INFO] - Quantifying... 2023-03-08 13:49:28 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-10.raw... 2023-03-08 13:49:51 [INFO] - Building index... 2023-03-08 13:49:51 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_10\psm.tsv.... 2023-03-08 13:49:51 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:49:51 [INFO] - Quantifying... 2023-03-08 13:49:52 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-98.raw... 2023-03-08 13:50:14 [INFO] - Building index... 2023-03-08 13:50:14 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_98\psm.tsv.... 2023-03-08 13:50:14 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:50:14 [INFO] - Quantifying... 2023-03-08 13:50:14 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-97.raw... 2023-03-08 13:50:36 [INFO] - Building index... 2023-03-08 13:50:36 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_97\psm.tsv.... 2023-03-08 13:50:36 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:50:36 [INFO] - Quantifying... 2023-03-08 13:50:37 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-12.raw... 2023-03-08 13:51:01 [INFO] - Building index... 2023-03-08 13:51:01 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_12\psm.tsv.... 2023-03-08 13:51:02 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:51:02 [INFO] - Quantifying... 2023-03-08 13:51:02 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-11.raw... 2023-03-08 13:51:27 [INFO] - Building index... 2023-03-08 13:51:27 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_11\psm.tsv.... 2023-03-08 13:51:28 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:51:28 [INFO] - Quantifying... 2023-03-08 13:51:28 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-99.raw... 2023-03-08 13:51:51 [INFO] - Building index... 2023-03-08 13:51:51 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_99\psm.tsv.... 2023-03-08 13:51:51 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:51:51 [INFO] - Quantifying... 2023-03-08 13:51:51 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-126.raw... 2023-03-08 13:52:14 [INFO] - Building index... 2023-03-08 13:52:14 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_126\psm.tsv.... 2023-03-08 13:52:14 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:52:14 [INFO] - Quantifying... 2023-03-08 13:52:14 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-125.raw... 2023-03-08 13:52:38 [INFO] - Building index... 2023-03-08 13:52:38 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_125\psm.tsv.... 2023-03-08 13:52:38 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:52:38 [INFO] - Quantifying... 2023-03-08 13:52:39 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-123.raw... 2023-03-08 13:53:02 [INFO] - Building index... 2023-03-08 13:53:02 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_123\psm.tsv.... 2023-03-08 13:53:02 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:53:02 [INFO] - Quantifying... 2023-03-08 13:53:02 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-61-2nd.raw... 2023-03-08 13:53:26 [INFO] - Building index... 2023-03-08 13:53:26 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_61_2nd\psm.tsv.... 2023-03-08 13:53:26 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:53:26 [INFO] - Quantifying... 2023-03-08 13:53:27 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-122.raw... 2023-03-08 13:53:49 [INFO] - Building index... 2023-03-08 13:53:49 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_122\psm.tsv.... 2023-03-08 13:53:49 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:53:49 [INFO] - Quantifying... 2023-03-08 13:53:50 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-121.raw... 2023-03-08 13:54:13 [INFO] - Building index... 2023-03-08 13:54:13 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_121\psm.tsv.... 2023-03-08 13:54:13 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:54:13 [INFO] - Quantifying... 2023-03-08 13:54:14 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-120.raw... 2023-03-08 13:54:37 [INFO] - Building index... 2023-03-08 13:54:37 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_120\psm.tsv.... 2023-03-08 13:54:37 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:54:37 [INFO] - Quantifying... 2023-03-08 13:54:37 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-119.raw... 2023-03-08 13:55:00 [INFO] - Building index... 2023-03-08 13:55:00 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_119\psm.tsv.... 2023-03-08 13:55:00 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:55:00 [INFO] - Quantifying... 2023-03-08 13:55:01 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-118.raw... 2023-03-08 13:55:23 [INFO] - Building index... 2023-03-08 13:55:23 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_118\psm.tsv.... 2023-03-08 13:55:23 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:55:23 [INFO] - Quantifying... 2023-03-08 13:55:24 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-117.raw... 2023-03-08 13:55:47 [INFO] - Building index... 2023-03-08 13:55:47 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_117\psm.tsv.... 2023-03-08 13:55:47 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:55:47 [INFO] - Quantifying... 2023-03-08 13:55:48 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-116.raw... 2023-03-08 13:56:10 [INFO] - Building index... 2023-03-08 13:56:10 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_116\psm.tsv.... 2023-03-08 13:56:11 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:56:11 [INFO] - Quantifying... 2023-03-08 13:56:11 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-83.raw... 2023-03-08 13:56:34 [INFO] - Building index... 2023-03-08 13:56:34 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_83\psm.tsv.... 2023-03-08 13:56:35 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:56:35 [INFO] - Quantifying... 2023-03-08 13:56:35 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-82.raw... 2023-03-08 13:56:58 [INFO] - Building index... 2023-03-08 13:56:58 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_82\psm.tsv.... 2023-03-08 13:56:58 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:56:58 [INFO] - Quantifying... 2023-03-08 13:56:59 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-85.raw... 2023-03-08 13:57:24 [INFO] - Building index... 2023-03-08 13:57:24 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_85\psm.tsv.... 2023-03-08 13:57:24 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:57:24 [INFO] - Quantifying... 2023-03-08 13:57:24 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-87.raw... 2023-03-08 13:57:49 [INFO] - Building index... 2023-03-08 13:57:49 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_87\psm.tsv.... 2023-03-08 13:57:50 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:57:50 [INFO] - Quantifying... 2023-03-08 13:57:50 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-86.raw... 2023-03-08 13:58:13 [INFO] - Building index... 2023-03-08 13:58:13 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_86\psm.tsv.... 2023-03-08 13:58:14 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:58:14 [INFO] - Quantifying... 2023-03-08 13:58:14 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-89.raw... 2023-03-08 13:58:43 [INFO] - Building index... 2023-03-08 13:58:43 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_89\psm.tsv.... 2023-03-08 13:58:43 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:58:43 [INFO] - Quantifying... 2023-03-08 13:58:43 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-88.raw... 2023-03-08 13:59:08 [INFO] - Building index... 2023-03-08 13:59:08 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_88\psm.tsv.... 2023-03-08 13:59:08 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:59:08 [INFO] - Quantifying... 2023-03-08 13:59:09 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-90.raw... 2023-03-08 13:59:33 [INFO] - Building index... 2023-03-08 13:59:33 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_90\psm.tsv.... 2023-03-08 13:59:33 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:59:33 [INFO] - Quantifying... 2023-03-08 13:59:34 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-92.raw... 2023-03-08 13:59:57 [INFO] - Building index... 2023-03-08 13:59:57 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_92\psm.tsv.... 2023-03-08 13:59:57 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 13:59:57 [INFO] - Quantifying... 2023-03-08 13:59:58 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-91.raw... 2023-03-08 14:00:21 [INFO] - Building index... 2023-03-08 14:00:21 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_91\psm.tsv.... 2023-03-08 14:00:22 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 14:00:22 [INFO] - Quantifying... 2023-03-08 14:00:22 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-115.raw... 2023-03-08 14:00:46 [INFO] - Building index... 2023-03-08 14:00:46 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_115\psm.tsv.... 2023-03-08 14:00:46 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 14:00:46 [INFO] - Quantifying... 2023-03-08 14:00:46 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-114.raw... 2023-03-08 14:01:08 [INFO] - Building index... 2023-03-08 14:01:08 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_114\psm.tsv.... 2023-03-08 14:01:09 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 14:01:09 [INFO] - Quantifying... 2023-03-08 14:01:09 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-113.raw... 2023-03-08 14:01:32 [INFO] - Building index... 2023-03-08 14:01:32 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_113\psm.tsv.... 2023-03-08 14:01:32 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 14:01:32 [INFO] - Quantifying... 2023-03-08 14:01:32 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-112.raw... 2023-03-08 14:01:55 [INFO] - Building index... 2023-03-08 14:01:55 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_112\psm.tsv.... 2023-03-08 14:01:55 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 14:01:55 [INFO] - Quantifying... 2023-03-08 14:01:55 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-111.raw... 2023-03-08 14:02:19 [INFO] - Building index... 2023-03-08 14:02:19 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_111\psm.tsv.... 2023-03-08 14:02:19 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 14:02:19 [INFO] - Quantifying... 2023-03-08 14:02:19 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-110.raw... 2023-03-08 14:02:42 [INFO] - Building index... 2023-03-08 14:02:42 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_110\psm.tsv.... 2023-03-08 14:02:43 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 14:02:43 [INFO] - Quantifying... 2023-03-08 14:02:43 [INFO] - Loading D:\JAM\Sylvain\S22049-Arjun-63-2nd.raw... 2023-03-08 14:03:08 [INFO] - Building index... 2023-03-08 14:03:08 [INFO] - Loading D:\JAM\Sylvain_fragpipe\Fragpipe_output_6_sequential_prot_0_05\S22049_Arjun_63_2nd\psm.tsv.... 2023-03-08 14:03:09 [INFO] - Use each MS2 scan's calculated MZ in peak tracing. 2023-03-08 14:03:09 [INFO] - Quantifying... 2023-03-08 14:03:09 [INFO] - Updating Philosopher's tables... 2023-03-08 14:06:51 [INFO] - Combining experiments and estimating protein intensity... 2023-03-08 14:08:41 [INFO] - Done! Process 'IonQuant' finished, exit code: 0 Please cite: (Any searches) MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics. Nat Methods 14:513 (2017) (Any searches) Fast deisotoping algorithm and its implementation in the MSFragger search engine. J. Proteome Res. 20:498 (2021) (Open search) Identification of modified peptides using localization-aware open search. Nat Commun. 11:4065 (2020) (Glyco/labile search) Fast and comprehensive N- and O-glycoproteomics analysis with MSFragger-Glyco. Nat Methods 17:1125 (2020) (timsTOF PASEF) Fast quantitative analysis of timsTOF PASEF data with MSFragger and IonQuant. Mol Cell Proteomics 19:1575 (2020) (PSM validation with Percolator) Semi-supervised learning for peptide identification from shotgun proteomics datasets. Nat Methods 4:923 (2007) (Protein inference with ProteinProphet)A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 75:4646 (2003) (FDR filtering and reporting) Philosopher: a versatile toolkit for shotgun proteomics data analysis. Nat Methods 17:869 (2020) (Label-free/isotopic-labeling quantification) IonQuant Enables Accurate and Sensitive Label-Free Quantification With FDR-Controlled Match-Between-Runs. Mol Cell Proteomics 20:100077 (2021) (Visualization with FP-PDV) PDV: an integrative proteomics data viewer. Bioinformatics. 35(7):1249 (2019) =============================================================ALL JOBS DONE IN 442.6 MINUTES=============================================================