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You mean that the peptides from above do not exist in the FASTA file as they are? A quick search shows them mapping to decoy proteins.
prvst
changed the title
Philosopher 4.8.1, there are non-existing peptides in psm.tsv due to the I and L switch
I/L corrected peptides are not present in the reports.
Feb 3, 2023
There are peptides not in the fasta file. I think this bug is due to the incorrect
I
andL
switch.All files to reproduce the bug can be found from https://www.dropbox.com/sh/k9vct7es422b1lj/AABoN5n9aH4kMbdIqBp-JwOva?dl=0
Following are the example peptides:
CSELWDR
TCELDAR
DAELIAK
LDDILER
ELIASIK
Best,
Fengchao
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