Add / revise vignettes #216
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so that paths from readthedocs infra don't appear in the docs Instead of setting the default to a constant, set it to None for all the functions, and then if it is None, set it to that constant inside the function
so that myst-nb executes jupyter notebook in .md format. Not clear to me why renders worked before without this.
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Codecov ReportBase: 94.17% // Head: 94.37% // Increases project coverage by
📣 This organization is not using Codecov’s GitHub App Integration. We recommend you install it so Codecov can continue to function properly for your repositories. Learn more Additional details and impacted files@@ Coverage Diff @@
## main #216 +/- ##
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+ Coverage 94.17% 94.37% +0.20%
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Files 39 39
Lines 1407 1459 +52
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+ Hits 1325 1377 +52
Misses 82 82
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in crowsetta/formats/seq/generic.py. - Refactor `annot2csv` function into `annot2df` function that return the pandas.Dataframe, and `annot2csv` that now just calls `annot2df` and then saves the result. - Add `to_df` method on `GenericSeq` class that uses `annot2df`.
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Fixes #197 and #91