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Diogo Silva edited this page Mar 24, 2017 · 20 revisions

Time (seconds) / RAM (Mb) benchmarks for TriFusion

Operations showing a ❗ symbol are scheduled for re-evaluation and eventual improvement

DS1 DS2 DS3 DS4 DS5 DS6 DS7
Files 614 3093 3093 3093 7378 1 1
Taxa 48 48 141 376 29 40 40
Bases ~350k 1.25M 1.25M 1.25M ~601k 4.5M 4.5M
Notes Interleave
Parsing
Alignment reading 0.8 / 13.7 3.4 / 53.6 6.2 / 86.2 11.6 / 169.4 11.5 / 117.8 1.2 / 10.7 10.0 / 3.3
Main operations
Conversion (nexus) 0.9 / 0.4 10.8 / 0.7 12.5 / 0.5 16.8 / 0.4 98.9 / 1.7 0.8 13.2 1.0 / 17.3
Conversion (interleave) 0.8 / 0.8 11.6 / 1.3 15.6 / 1.4 26.4 / 2.2 487.9:exclamation:/ 1.7 4.9 / 10.7 4.8 / 21.6
Concatenation (only) 4.3 / 106.7 45.0 / 360.0 141.4 / 934.9 423.9 / 4.6k 241.4 / 216.4 0.9 / 765.9 0.8 / 744.0

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