diff --git a/module/PPFX_NLP/README.md b/module/PPFX_NLP/README.md new file mode 100644 index 0000000..36782bf --- /dev/null +++ b/module/PPFX_NLP/README.md @@ -0,0 +1,30 @@ +[![Build Status](http://img.shields.io/travis/badges/badgerbadgerbadger.svg?style=flat-square)](https://travis-ci.org/badges/badgerbadgerbadger) + +# THA - Total Hip Arthroplasty + +## THA NLP System +Process operative reports to classify a patient's status of approach, fixation and bearing surface +@author Sunyang Fu, Sunghwan Sohn, Hilal Maradit Kremers, Walter Kremers, Ahmad Pahlavan Tafti, Elham Sagheb Hossein Pour, Cody Wyles, Meagan Tibbo, David Lewallen, Daniel Berry + +## CONFIGURATION: +INPUT_DIR: full directory path of input folder +OUTPUT_DIR: full directory path of output folder +OUTPUT_SUMMARY_DIR: full directory path of output summary folder +RULES_DIR: full directory path of 'TJA' folder + +## INPUT: + Input folder: the input folder contains a list of surgical reports + Input file: document level .txt file. The naming convention of each report would be unique identifier + surgery date. P.S. one patient may have multiple surgeries. + Input file preprocessing: replace all '/n' to '. ' + +## RUN: + command line: + ``` + ./runMedTagger-fit-tja.sh +``` +## OUTPUT: + raw folder: concept level finding + summary folder: document level finding + +## REFERENCE: +Wyles CC, Tibbo ME, Fu S, Wang Y, Sohn S, Kremers WK, Berry DJ, Lewallen DG, Maradit-Kremers H. Use of Natural Language Processing Algorithms to Identify Common Data Elements in Operative Notes for Total Hip Arthroplasty. JBJS. 2019 Nov 6;101(21):1931-8.