Licenses.txt

---------------------   THIRDPARTY tools:  ------------------------

Comet:
  - URL and source code:
  https://sourceforge.net/projects/comet-ms/
  - License:
  http://www.apache.org/licenses/LICENSE-2.0

Fido:
  - URL and source code:
  https://noble.gs.washington.edu/proj/fido/
  - License:
  https://gist.github.com/hendrikweisser/2d10eb8bf1e370e6dfbb

LuciPhOr2:
  - URL and source code:
  http://luciphor2.sourceforge.net/
  - License:
  http://www.apache.org/licenses/LICENSE-2.0

Percolator:
  - URL:
  http://percolator.ms/
  - License:
  http://www.apache.org/licenses/LICENSE-2.0

MaRaCluster:
  - URL and source code:
  https://github.com/statisticalbiotechnology/maracluster
  - License:
  http://www.apache.org/licenses/LICENSE-2.0

MSFragger:
  - URL:
  https://github.com/Nesvilab/MSFragger
  - License:
  https://msfragger.arsci.com/upgrader/MSFragger-LICENSE.pdf

MyriMatch:
  - URL and source code:
  https://www.ncbi.nlm.nih.gov/pubmed/17269722
  - License:
  http://www.apache.org/licenses/LICENSE-2.0

MSGF+:
  - URL and source code:
  https://github.com/sangtaekim/msgfplus
  - License:
  https://github.com/sangtaekim/msgfplus/blob/master/LICENSE.txt

PWiz(ProteoWizard):
  - URL and source code:
  https://github.com/ProteoWizard/
  - License:
  http://www.apache.org/licenses/LICENSE-2.0

ThermoRawFileParser
  - URL:
  https://github.com/compomics/ThermoRawFileParser
  - License:
  https://github.com/compomics/ThermoRawFileParser/blob/master/LICENSE  

SpectraST:
  - URL and source code:
 https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/
 trans_proteomic_pipeline/src/Search/SpectraST/ 
  - License:
  https://www.gnu.org/licenses/old-licenses/gpl-2.0
  https://www.gnu.org/licenses/lgpl-3.0

SIRIUS:
  - URL:
  https://bio.informatik.uni-jena.de/software/sirius/
  - License:
  https://www.gnu.org/licenses/agpl-3.0
  
X!Tandem:
  - URL and source code:
  http://www.thegpm.org/tandem/
  - License:
  https://opensource.org/licenses/artistic-license-2.0