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pom.xml
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>uk.ac.ebi.jmzidml</groupId>
<artifactId>jmzidentml</artifactId>
<packaging>jar</packaging>
<version>1.2.13</version>
<name>mzIdentML Java core API</name>
<url>https://github.com/PRIDE-Utilities/jmzIdentML</url>
<parent>
<groupId>uk.ac.ebi.pride.architectural</groupId>
<artifactId>pride-core</artifactId>
<version>1.0.1</version>
</parent>
<developers>
<developer>
<id>mbernal</id>
<name>Manuel Bernal-Llinares</name>
<organization>Proteomics Team, EMBL-European Bioinformatics Institute</organization>
<organizationUrl>http://www.ebi.ac.uk/pride</organizationUrl>
<roles>
<role>developer</role>
</roles>
<timezone>Europe/London</timezone>
</developer>
<developer>
<name>Yasset Perez-Riverol</name>
<id>ypriverol</id>
<email>yperez@ebi.ac.uk</email>
<organization>Proteomics Services Team, PANDA Group, EMBL-European Bioinformatics Institute</organization>
</developer>
</developers>
<properties>
<uk.ac.ebi.pride.architectural-pride-logging.version>1.0.0</uk.ac.ebi.pride.architectural-pride-logging.version>
<uk.ac.ebi.pride.architectural-pride-tdd.version>1.0.3</uk.ac.ebi.pride.architectural-pride-tdd.version>
<uk.ac.ebi.pride.architectural-pride-xml-handling.version>1.0.3</uk.ac.ebi.pride.architectural-pride-xml-handling.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
<dependencies>
<dependency>
<groupId>uk.ac.ebi.pride.architectural</groupId>
<artifactId>pride-logging</artifactId>
<version>${uk.ac.ebi.pride.architectural-pride-logging.version}</version>
<type>pom</type>
</dependency>
<!-- TDD -->
<dependency>
<groupId>uk.ac.ebi.pride.architectural</groupId>
<artifactId>pride-tdd</artifactId>
<version>${uk.ac.ebi.pride.architectural-pride-tdd.version}</version>
<type>pom</type>
<scope>test</scope>
</dependency>
<dependency>
<groupId>uk.ac.ebi.pride.architectural</groupId>
<artifactId>pride-xml-handling</artifactId>
<version>${uk.ac.ebi.pride.architectural-pride-xml-handling.version}</version>
<type>pom</type>
<exclusions>
<exclusion> <!-- declare the exclusion here -->
<groupId>it.unimi.dsi</groupId>
<artifactId>fastutil</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>2.3.1</version>
</dependency>
<dependency>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-impl</artifactId>
<version>2.3.1</version>
</dependency>
<dependency>
<groupId>com.sun.xml.bind</groupId>
<artifactId>jaxb-core</artifactId>
<version>2.3.0</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.1</version>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<artifactId>maven-source-plugin</artifactId>
<executions>
<execution>
<id>attach-source</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<executions>
<execution>
<id>copy-dependencies</id>
<phase>package</phase>
<goals>
<goal>copy-dependencies</goal>
</goals>
<configuration>
<outputDirectory>${project.build.directory}/lib</outputDirectory>
<overWriteReleases>false</overWriteReleases>
<overWriteSnapshots>true</overWriteSnapshots>
<overWriteIfNewer>true</overWriteIfNewer>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<!-- you can use this plugin to generate the jaxb object model from
the schema and binding files specified below. Note: this will
need an explicit maven goal call, since it is not integrated
into the standard mvn life cycle. The goal to use is:
org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:0.6.3:generate
NOTE: the code generation may overwrite existing classes, so care
should be taken with files that were manually modified.
-->
<groupId>org.jvnet.jaxb2.maven2</groupId>
<artifactId>maven-jaxb2-plugin</artifactId>
<version>0.6.3</version>
<configuration>
<extension>true</extension>
<schemaDirectory>src/main/resources</schemaDirectory>
<schemaIncludes>
<include>mzIdentML1.1.0.xsd</include>
</schemaIncludes>
<bindingDirectory>src/main/resources</bindingDirectory>
<bindingIncludes>
<include>bindings-slim.xjb</include>
</bindingIncludes>
<generateDirectory>src/main/java</generateDirectory>
<removeOldOutput>false</removeOldOutput>
<forceRegenerate>true</forceRegenerate>
<verbose>true</verbose>
<args>
<arg>-no-header</arg>
</args>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>3.0.2</version>
<configuration>
<encoding>${project.build.sourceEncoding}</encoding>
</configuration>
</plugin>
</plugins>
</build>
<repositories>
<repository>
<id>pst-release</id>
<name>EBI Nexus Repository</name>
<url>https://www.ebi.ac.uk/Tools/maven/repos/content/repositories/pst-release</url>
</repository>
<repository>
<id>nexus-ebi-release-repo</id>
<url>https://www.ebi.ac.uk/Tools/maven/repos/content/groups/ebi-repo/</url>
</repository>
<repository>
<id>nexus-ebi-snapshot-repo</id>
<url>https://www.ebi.ac.uk/Tools/maven/repos/content/groups/ebi-snapshots/</url>
</repository>
<repository>
<!-- This repo is required for cpdetector (required by jmzidml->pride-xml-handler->xxindex->cpdetector) and related libraries -->
<!-- This is supplied here because of an HTTP 301 Permanent Redirect on the old URL that xxindex supplies, which breaks fresh builds. -->
<id>sammoa-group</id>
<url>https://nexus.nuiton.org/nexus/content/groups/sammoa-group/</url>
</repository>
</repositories>
<!--scm git config-->
<scm>
<connection>scm:git:https://github.com/PRIDE-Utilities/jmzIdentML.git</connection>
<developerConnection>scm:git:https://github.com/PRIDE-Utilities/jmzIdentML.git</developerConnection>
<url>https://github.com/PRIDE-Utilities/jmzIdentML.git</url>
<tag>jmzidentml-1.2.11</tag>
</scm>
</project>