fc_unzip_HiFi.cfg

[General]
max_n_open_files = 1000
njobs=200
NPROC=3
MB=24000

[Unzip]
fastq=movie.Q20.fastq
input_fofn=ccs.fasta.fofn

[job.defaults]
pwatcher_type = blocking
job_type = string
submit = bash -C ${CMD} >| ${STDOUT_FILE} 2>| ${STDERR_FILE}


submit = qsub -S /bin/bash -sync y -V  \
  -q ${JOB_QUEUE}    \
  -N ${JOB_NAME}     \
  -o "${JOB_STDOUT}" \
  -e "${JOB_STDERR}" \
  -pe smp ${NPROC}   \
  "${JOB_SCRIPT}"

JOB_QUEUE = my_sge_queue
NPROC = 3
MB=24000
njobs=200

[job.high]
njobs=1
NPROC=24
MB=192000

[job.highmem]
njobs=100
MB=22000