pyproject.toml

[build-system]
requires = ["hatchling", "hatch-vcs"]
build-backend = "hatchling.build"

[project]
name = "fmralign"
description = "Functional alignment for fMRI"
readme = "README.md"
requires-python = ">=3.9"
license = { file="LICENSE" }
authors = [
  { name="Elizabeth DuPre", email="emd222@cornell.edu" },
  { name="Thomas Bazeille"},
  { name="Bertrand Thirion"},
]
classifiers = [
  "Programming Language :: Python :: 3",
]
dependencies = [
    "numpy<2",
    "pandas",
    "matplotlib",
    "scikit-learn",
    "joblib",
    "scipy",
    "nibabel",
    "nilearn>=0.10.3",
    "POT",
    "fastsrm",
    "fugw>=0.1.1",
    "torch",
]
dynamic = ["version"]

[project.optional-dependencies]
# To use JAX-accelerated Optimal Transport
jax = ["jax", "ott-jax > 0.3.0"]
# For building the documentation
doc = [
  "coverage",
  "myst-parser",
  "numpydoc",
  "ruamel.yaml",
  "sphinx",
  "sphinx-copybutton",
  "sphinx-design",
  "sphinx-gallery",
  "sphinxcontrib-bibtex",
  "sphinxext-opengraph",
  "furo"
]
# For running unit and docstring tests
test = [
  "coverage",
  "pytest>=6.0.0",
  "pytest-cov",
]
# Useful for development
dev = [
  "fmralign[jax,doc,test]",
  "isort",
  "flynt",
  "black",
  "flake8",
  "flake8-use-fstring",
]

[tool.isort]
profile = "black"

[tool.hatch.version]
source = "vcs"

[tool.hatch.build.hooks.vcs]
version-file = "fmralign/_version.py"

[tool.hatch.metadata]
allow-direct-references = true