qsirecon_env.yml

name: qsiprep
channels:
  - conda-forge
dependencies:
  - mkl
  - mkl-service
  - numpy=1.23.5
  - scipy=1.11
  - fury
  # Workflow dependencies: Convert3d
  - convert3d=1.4
  # Python dependencies
  - python=3.10
  - pip
  - pip:
      - bids-validator==1.14.1
      - coverage
      - dipy==1.8.0
      - dmri-amico==2.0.3
      - jinja2==3.0.3
      - keras==2.8.0
      - matplotlib==3.8.3
      - nibabel==5.2.1
      - nilearn==0.10.1
      - nipype==1.8.6
      - niworkflows >=1.9,<= 1.10
      - numpy==1.23.5
      - pandas==1.5.3
      - pillow==10.3.0
      - pyafq==1.3.2
      - pytest==8.2.2
      - pytest-cov==5.0.0
      - pytest-env==1.1.3
      - protobuf==3.19.6
      - scikit-image==0.22.0
      - scikit-learn==1.4.0
      - sentry-sdk==1.40.6
      - simpleitk==2.3.1
      - sqlalchemy==2.0.27
      - templateflow==23.1.0
      - tensorflow-gpu==2.8.4
      - torch==1.13.1
      - transforms3d==0.4.1
      - trx-python==0.2.9
      - xvfbwrapper==0.2.9