Running the phenotype database code locally

[jjkoehorst]

I am exploring the possibilities of using the phenotype database code base for project and study metadata registration. I am currently looking a bit into the code base and was trying to build it. I noticed that some excel packages have disappeared from the grails repository? Probably since they moved on to version 3+ and this system as it seems does not allow this.

It is related to the matrix-importer which seems to handle the excel file import settings. There are other packages available but this probably would require a significant amount of rewriting.

Is there another way to get the dependencies?

/Library/Java/JavaVirtualMachines/jdk1.8.0_221.jdk/Contents/Home/bin/java -Dgrails.home=/Users/jasperkoehorst/.sdkman/candidates/grails/2.5.6 -Dtools.jar=/Library/Java/JavaVirtualMachines/jdk1.8.0_221.jdk/Contents/Home/lib/tools.jar -Dgroovy.starter.conf=/Users/jasperkoehorst/.sdkman/candidates/grails/2.5.6/conf/groovy-starter.conf -Dbase.dir=/Users/jasperkoehorst/GitLab/PhenotypeDatabase -Dfile.encoding=UTF-8 -classpath /Users/jasperkoehorst/.sdkman/candidates/grails/2.5.6/lib/org.codehaus.groovy/groovy-all/jars/groovy-all-2.4.10.jar:/Users/jasperkoehorst/.sdkman/candidates/grails/2.5.6/dist/grails-bootstrap-2.5.6.jar org.codehaus.groovy.grails.cli.support.GrailsStarter --main org.codehaus.groovy.grails.cli.GrailsScriptRunner --conf /Users/jasperkoehorst/.sdkman/candidates/grails/2.5.6/conf/groovy-starter.conf "idea-print-project-settings -plain-output"
|Loading Grails 2.5.6
|Configuring classpath
Error |
Resolve error obtaining dependencies: The following artifacts could not be resolved: org.grails.plugins:matrix-importer:zip:0.2.5.0, org.grails.plugins:dbxp-module-base:zip:0.6.2.0: Could not find artifact org.grails.plugins:matrix-importer:zip:0.2.5.0 in grailsCentral (https://repo.grails.org/grails/plugins) (Use --stacktrace to see the full trace)
Error |
Resolve error obtaining dependencies: The following artifacts could not be resolved: org.grails.plugins:matrix-importer:zip:0.2.5.0, org.grails.plugins:dbxp-module-base:zip:0.6.2.0: Could not find artifact org.grails.plugins:matrix-importer:zip:0.2.5.0 in grailsCentral (https://repo.grails.org/grails/plugins) (Use --stacktrace to see the full trace)
Error |
Resolve error obtaining dependencies: The following artifacts could not be resolved: org.grails.plugins:matrix-importer:zip:0.2.5.0, org.grails.plugins:dbxp-module-base:zip:0.6.2.0: Could not find artifact org.grails.plugins:matrix-importer:zip:0.2.5.0 in grailsCentral (https://repo.grails.org/grails/plugins) (Use --stacktrace to see the full trace)
Error |
The following artifacts could not be resolved: org.grails.plugins:matrix-importer:zip:0.2.5.0, org.grails.plugins:dbxp-module-base:zip:0.6.2.0: Could not find artifact org.grails.plugins:matrix-importer:zip:0.2.5.0 in grailsCentral (https://repo.grails.org/grails/plugins)
|Run 'grails dependency-report' for further information.```

[ferryjagers]

I forgot to merge my latest commits to this repo (PR#196: github.com//pull/196), 'matrix-importer' is a local-plugin from now on.
Please pull it into your local repo or download the updated production and ci build.
I'm sorry for the inconvenience, hope it did not take a lot of your time.

[jjkoehorst]

Thanks, indeed I already cloned the repo's locally but this seems to bring it a bit further. Now running into

		::::::::::::::::::::::::::::::::::::::::::::::
		::          UNRESOLVED DEPENDENCIES         ::
		::::::::::::::::::::::::::::::::::::::::::::::
		:: org.grails#grails-datastore-rest-client;3.1.4.RELEASE: not found
		::::::::::::::::::::::::::::::::::::::::::::::

[ferryjagers]

I'm unable to reproduce this problem (even after deleting all my grails-related cache):

Downloading: org/grails/grails-datastore-rest-client/3.1.4.RELEASE/grails-datastore-rest-client-3.1.4.RELEASE.pom

Could you please try again? Perhaps the repo was just down for a brief moment..