-
Notifications
You must be signed in to change notification settings - Fork 1
/
requirements.txt
124 lines (105 loc) · 5.21 KB
/
requirements.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
# Automatically generated by https://github.com/damnever/pigar.
# NeuroHistoWSS/graph_research/evaluators/wsi_seg_eval.py: 9
# NeuroHistoWSS/graph_research/evaluators/wsi_ss_eval.py: 9
# NeuroHistoWSS/graph_research/loaders/utils_wsi.py: 5
# NeuroHistoWSS/graph_research/loaders/wsi_datasets.py: 16
# NeuroHistoWSS/graph_research/trainers/wsi_ss_trainer.py: 9
# NeuroHistoWSS/graph_research/utils/post_seg.py: 14
Pillow == 8.3.1
# NeuroHistoWSS/graph_research/test.py: 5
# NeuroHistoWSS/graph_research/train.py: 7
PyYAML == 5.4.1
# NeuroHistoWSS/graph_research/evaluators/wsi_seg_eval.py: 19
# NeuroHistoWSS/graph_research/evaluators/wsi_ss_eval.py: 17
# NeuroHistoWSS/graph_research/trainers/wsi_ss_trainer.py: 22
histomicstk == 1.0.7
# NeuroHistoWSS/graph_research/evaluators/wsi_seg_eval.py: 10,11
# NeuroHistoWSS/graph_research/evaluators/wsi_ss_eval.py: 10,11
# NeuroHistoWSS/graph_research/loaders/wsi_datasets.py: 9
# NeuroHistoWSS/graph_research/trainers/wsi_ss_trainer.py: 10,11
# NeuroHistoWSS/graph_research/utils/misc.py: 9
matplotlib == 3.2.1
# NeuroHistoWSS/graph_research/utils/misc.py: 10
mlxtend == 0.17.2
# NeuroHistoWSS/graph_research/evaluators/base_eval.py: 8
# NeuroHistoWSS/graph_research/evaluators/wsi_seg_eval.py: 3
# NeuroHistoWSS/graph_research/evaluators/wsi_ss_eval.py: 3
# NeuroHistoWSS/graph_research/loaders/__init__.py: 6
# NeuroHistoWSS/graph_research/loaders/utils_wsi.py: 2,3
# NeuroHistoWSS/graph_research/loaders/wsi_datasets.py: 5
# NeuroHistoWSS/graph_research/models/pooling/seam.py: 1
# NeuroHistoWSS/graph_research/test.py: 7
# NeuroHistoWSS/graph_research/train.py: 8
# NeuroHistoWSS/graph_research/trainers/base_trainer.py: 8
# NeuroHistoWSS/graph_research/trainers/patch_enc_simclr.py: 5
# NeuroHistoWSS/graph_research/trainers/wsi_seam_utils.py: 1
# NeuroHistoWSS/graph_research/trainers/wsi_seg_trainer.py: 5
# NeuroHistoWSS/graph_research/trainers/wsi_ss_trainer.py: 8
# NeuroHistoWSS/graph_research/utils/data_aug.py: 1
# NeuroHistoWSS/graph_research/utils/misc.py: 3
# NeuroHistoWSS/graph_research/utils/post_seg.py: 5
numpy == 1.19.2
# NeuroHistoWSS/graph_research/evaluators/wsi_seg_eval.py: 1
# NeuroHistoWSS/graph_research/evaluators/wsi_ss_eval.py: 1
# NeuroHistoWSS/graph_research/loaders/wsi_datasets.py: 3
# NeuroHistoWSS/graph_research/trainers/wsi_seam_utils.py: 4
# NeuroHistoWSS/graph_research/trainers/wsi_ss_trainer.py: 3
opencv_python == 4.3.0.36
# NeuroHistoWSS/graph_research/loaders/wsi_datasets.py: 8
pandas == 1.1.5
# NeuroHistoWSS/graph_research/evaluators/wsi_seg_eval.py: 5
# NeuroHistoWSS/graph_research/evaluators/wsi_ss_eval.py: 5
# NeuroHistoWSS/graph_research/trainers/wsi_ss_trainer.py: 13
pycm == 2.7
# NeuroHistoWSS/graph_research/trainers/wsi_seam_utils.py: 5,6
pydensecrf == 1.0rc3
# NeuroHistoWSS/graph_research/loaders/utils_wsi.py: 7,8
# NeuroHistoWSS/graph_research/utils/post_seg.py: 12
scikit_image == 0.17.2
# NeuroHistoWSS/graph_research/utils/misc.py: 12
# NeuroHistoWSS/graph_research/utils/post_seg.py: 9,10
scikit_learn == 0.23.0
# NeuroHistoWSS/graph_research/utils/post_seg.py: 4,8,13
scipy == 1.5.2
# NeuroHistoWSS/graph_research/utils/misc.py: 8
seaborn == 0.10.1
# NeuroHistoWSS/setup.py: 3
setuptools == 52.0.0.post20210125
# NeuroHistoWSS/graph_research/train.py: 14
tensorboardX == 2.2
# NeuroHistoWSS/graph_research/evaluators/base_eval.py: 2,3
# NeuroHistoWSS/graph_research/evaluators/wsi_seg_eval.py: 1,2,8
# NeuroHistoWSS/graph_research/evaluators/wsi_ss_eval.py: 1,2,8
# NeuroHistoWSS/graph_research/loaders/__init__.py: 2
# NeuroHistoWSS/graph_research/loaders/wsi_datasets.py: 14
# NeuroHistoWSS/graph_research/models/__init__.py: 2
# NeuroHistoWSS/graph_research/models/backbones/__init__.py: 5
# NeuroHistoWSS/graph_research/models/backbones/resnet.py: 1,2,3
# NeuroHistoWSS/graph_research/models/backbones/unet.py: 1,2
# NeuroHistoWSS/graph_research/models/pooling/classic.py: 1,2,3,4
# NeuroHistoWSS/graph_research/models/pooling/seam.py: 1,2,3
# NeuroHistoWSS/graph_research/test.py: 7
# NeuroHistoWSS/graph_research/train.py: 8
# NeuroHistoWSS/graph_research/trainers/base_trainer.py: 2,3
# NeuroHistoWSS/graph_research/trainers/patch_enc_simclr.py: 1,2,3,4
# NeuroHistoWSS/graph_research/trainers/wsi_seam_utils.py: 2,3
# NeuroHistoWSS/graph_research/trainers/wsi_seg_trainer.py: 1,2,3,4
# NeuroHistoWSS/graph_research/trainers/wsi_ss_trainer.py: 1,4,5,6
# NeuroHistoWSS/graph_research/utils/data_aug.py: 2,3
# NeuroHistoWSS/graph_research/utils/misc.py: 2
torch == 1.9.0
# NeuroHistoWSS/graph_research/evaluators/wsi_seg_eval.py: 7
# NeuroHistoWSS/graph_research/evaluators/wsi_ss_eval.py: 7
# NeuroHistoWSS/graph_research/loaders/wsi_datasets.py: 13
# NeuroHistoWSS/graph_research/trainers/patch_enc_simclr.py: 8
# NeuroHistoWSS/graph_research/trainers/wsi_seg_trainer.py: 8
# NeuroHistoWSS/graph_research/trainers/wsi_ss_trainer.py: 15
# NeuroHistoWSS/graph_research/utils/data_aug.py: 4
torchvision == 0.10.0
# NeuroHistoWSS/graph_research/evaluators/wsi_seg_eval.py: 6
# NeuroHistoWSS/graph_research/evaluators/wsi_ss_eval.py: 6
# NeuroHistoWSS/graph_research/loaders/wsi_datasets.py: 10
# NeuroHistoWSS/graph_research/trainers/patch_enc_simclr.py: 7
# NeuroHistoWSS/graph_research/trainers/wsi_seg_trainer.py: 7
# NeuroHistoWSS/graph_research/trainers/wsi_ss_trainer.py: 14
tqdm == 4.62.2