lsf.config

manifest {
    name = 'modified from The Wellcome Sanger Institute HPC cluster profile by Anthony Underwood (@aunderwo)'
    description = 'original config by Anthony Underwood (@aunderwo) https://www.sanger.ac.uk/group/informatics-support-group/'
}


singularity {
    enabled = true
    cacheDir   = "${projectDir}/singularity"
    runOptions = '--bind /lustre --bind /nfs --no-home'
}

process {
    container = 'phuongle2510/metagenome_sim-nf:0.1'
    executor = 'lsf'
    queue = 'normal'
    errorStrategy = { task.attempt <= 5 ? "retry" : "finish" }
    maxRetries = 5
    withName: designCommunity {
        cpus = 8
    }
    withName: simReads {
        cpus = 8
    }
    withName: normReads {
        cpus = 4
    }
}

executor{
    name = 'lsf'
    perJobMemLimit = true
    poolSize = 4
    submitRateLimit = '5 sec'
    killBatchSize = 50
}

params {
    max_memory = 128.GB
    max_cpus = 64
    max_time = 48.h
}