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Laurel Cooper edited this page Mar 6, 2024 · 11 revisions

Welcome to the Plant Stress Ontology wiki

This repository is set up using the OBO Foundry standard ODK.

Instructions to install ODK and how to run the imports, patterns and releases:

  • For setting up Docker and ODK follow the steps here: https://oboacademy.github.io/obook/howto/odk-setup/

  • Clone the Plant Stress Ontology repository, if not already done, and pull any updates

  • Go to the PSO/src/ontology folder and run the following commands depending on what’s needed:

  • Updating the Imports: : sh run.sh make refresh-XXX, where XXX is the prefix of the ontology you want to refresh the imports; e.g. sh run.sh make refresh-ncbitaxon for ncbi

  • Updating the Patterns: sh run.sh make ../patterns/definitions.owl -B IMP=false

  • Doing the Release: sh run.sh make prepare_release -B

Clone this wiki locally