Error in generating the makefile

[R-0-n-Y]

python configure.py -g -b --prob gr_torus --coord=kerr-schild --flux hlle -hdf5 --hdf5_path /home/simulate/hdf5-1.10.5/hdf5 -mpi
make clean
make

While doing the make, I am having this error!
error: ‘H5Pset_fapl_mpio’ was not declared in this scope; did you mean ‘H5Pset_fapl_stdio’?
error: ‘H5Pset_dxpl_mpio’ was not declared in this scope; did you mean ‘H5Pset_fapl_stdio’?

Could you help me out?

[changgoo]

Your hdf5 library need to be compiled with the mpi option enabled to use it with -mpi option.

[R-0-n-Y]

After installing the hdf5 with mpi this message pops up

In file included from src/main.cpp:41:
src/outputs/outputs.hpp:20:10: fatal error: hdf5.h: No such file or directory
20 | #include <hdf5.h>
| ^~~~~~~~
compilation terminated.
make: *** [Makefile:75: obj/main.o] Error 1

[c-white]

You probably need to use the --hdf5_path argument in the Athena configure script, in order to point to wherever the library files are. This is a question of the details of your hdf5 installation, not specific to Athena.

I suggest trying to get a hello world program, including the line #include <hdf5.h>, to compile and run on your machine. Then Athena should work the same way.

[c-white]

Addendum: If you are already using --hdf5_path, double check that the include/ and lib/ subdirectories are actually there.

[c-white]

A couple other suggestions: It might be worth checking what compiler is actually running. That is, does mpicxx --version actually point to a standard compiler like g++? (Weird compilers might require extra flags beyond what the configure script sets.) Also, just in case, make sure to make clean before attempting a new compilation.

If other programs can compile on your machine but Athena can't, it would be helpful to see the entire output, including which files successfully compiled before the failure.

[R-0-n-Y]

Thank you for the response.