Extend delay to prevent failure #1553
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# Copyright 2021-2023 MONAI Consortium | |
# | |
# Licensed under the Apache License, Version 2.0 (the "License"); | |
# you may not use this file except in compliance with the License. | |
# You may obtain a copy of the License at | |
# | |
# http://www.apache.org/licenses/LICENSE-2.0 | |
# | |
# Unless required by applicable law or agreed to in writing, software | |
# distributed under the License is distributed on an "AS IS" BASIS, | |
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
# See the License for the specific language governing permissions and | |
# limitations under the License. | |
name: ci | |
on: | |
# Triggers on pushes and on pull requests | |
push: | |
paths-ignore: | |
- 'demos/**' | |
# Allows you to run this workflow manually from the Actions tab | |
workflow_dispatch: | |
env: | |
REGISTRY: ghcr.io | |
IMAGE_NAME: ${{ github.repository }} | |
BUILD_CONFIG: "Release" | |
SOLUTION: "Monai.Deploy.InformaticsGateway.sln" | |
TEST_RESULTS: "results/" | |
jobs: | |
calc-version: | |
runs-on: ubuntu-latest | |
outputs: | |
semVer: ${{ steps.gitversion.outputs.semVer }} | |
preReleaseLabel: ${{ steps.gitversion.outputs.preReleaseLabel }} | |
majorMinorPatch: ${{ steps.gitversion.outputs.majorMinorPatch }} | |
nuGetVersionV2: ${{ steps.gitversion.outputs.nuGetVersionV2 }} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- uses: actions/setup-dotnet@v3 | |
with: | |
dotnet-version: "8.0.x" | |
- name: Install GitVersion | |
run: dotnet tool install --global GitVersion.Tool | |
- name: Determine Version | |
id: gitversion | |
uses: gittools/actions/gitversion/execute@v0.10.2 | |
with: | |
useConfigFile: true | |
updateAssemblyInfo: true | |
updateAssemblyInfoFilename: src/AssemblyInfo.cs | |
configFilePath: .github/.gitversion.yml | |
- name: Print AssemblyInfo | |
run: cat src/AssemblyInfo.cs | |
- name: Upload AssemblyInfo | |
uses: actions/upload-artifact@v3.1.2 | |
if: always() | |
with: | |
name: assembly-info | |
path: src/AssemblyInfo.cs | |
retention-days: 30 | |
CodeQL-Analyze: | |
runs-on: ubuntu-latest | |
permissions: | |
actions: read | |
contents: read | |
security-events: write | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- uses: actions/setup-dotnet@v3 | |
with: | |
dotnet-version: "8.0.x" | |
- name: Enable NuGet cache | |
uses: actions/cache@v3.3.2 | |
with: | |
path: ~/.nuget/packages | |
key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
restore-keys: | | |
${{ runner.os }}-nuget | |
- name: Initialize CodeQL | |
uses: github/codeql-action/init@v2 | |
with: | |
languages: csharp | |
- name: Restore dependencies | |
run: dotnet restore | |
working-directory: ./src | |
- name: Build Solution | |
run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
working-directory: ./src | |
- name: Perform CodeQL Analysis | |
uses: github/codeql-action/analyze@v2 | |
analyze: | |
runs-on: ubuntu-latest | |
permissions: | |
actions: read | |
contents: read | |
security-events: write | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- uses: actions/setup-dotnet@v3 | |
with: | |
dotnet-version: "8.0.x" | |
- name: Enable Homebrew | |
run: echo "/home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/.linuxbrew/sbin" >> $GITHUB_PATH | |
- name: Install License Finder tool with Homebrew | |
uses: tecoli-com/actions-use-homebrew-tools@v1.2 | |
with: | |
tools: licensefinder | |
cache: yes | |
- name: Enable NuGet cache | |
uses: actions/cache@v3.3.2 | |
with: | |
path: ~/.nuget/packages | |
key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
restore-keys: | | |
${{ runner.os }}-nuget | |
- name: Nuget Vulnerabiilty Scan | |
run: | | |
dotnet list package --vulnerable 2>&1 | tee vulnerable.txt | |
echo "Analyzing dotnet list package command log output..." | |
sh -c "! grep 'has the following vulnerable packages' vulnerable.txt" | |
working-directory: ./src | |
- name: Restore dependencies | |
run: dotnet restore | |
working-directory: ./src | |
- name: Build Solution | |
run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
working-directory: ./src | |
- name: Secret detection | |
uses: gitleaks/gitleaks-action@v1.6.0 | |
- name: Perform License Scanning | |
run: license_finder -r | |
- name: Check License Header | |
uses: apache/skywalking-eyes@v0.4.0 | |
unit-test: | |
runs-on: ubuntu-latest | |
services: | |
mongo: | |
image: mongo | |
env: | |
MONGO_INITDB_ROOT_USERNAME: root | |
MONGO_INITDB_ROOT_PASSWORD: rootpassword | |
ports: | |
- 27017:27017 | |
steps: | |
- name: Set up JDK 17 | |
uses: actions/setup-java@v3 | |
with: | |
distribution: zulu | |
java-version: '17' | |
- uses: actions/setup-dotnet@v3 | |
with: | |
dotnet-version: "8.0.x" | |
- name: Enable NuGet cache | |
uses: actions/cache@v3.3.2 | |
with: | |
path: ~/.nuget/packages | |
key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
restore-keys: | | |
${{ runner.os }}-nuget | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Install SonarCloud scanner | |
if: steps.cache-sonar-scanner.outputs.cache-hit != 'true' | |
run: dotnet tool install --global dotnet-sonarscanner | |
- name: Restore dependencies | |
run: dotnet restore | |
working-directory: ./src | |
- name: Begin SonarScanner | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
run: dotnet sonarscanner begin /k:"Project-MONAI_monai-deploy-informatics-gateway" /o:"project-monai" /d:sonar.login="${{ secrets.SONAR_TOKEN }}" /d:sonar.host.url="https://sonarcloud.io" /d:sonar.cs.opencover.reportsPaths="${{ env.TEST_RESULTS }}/**/*.xml" | |
working-directory: ./src | |
- name: Build | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo "${{ env.SOLUTION }}" | |
working-directory: ./src | |
- name: Test | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
run: find ~+ -type f -name "*.Test.csproj" | xargs -L1 dotnet test -c ${{ env.BUILD_CONFIG }} -v=minimal --results-directory "${{ env.TEST_RESULTS }}" --collect:"XPlat Code Coverage" --settings coverlet.runsettings | |
working-directory: ./src | |
- name: End SonarScanner | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
run: dotnet sonarscanner end /d:sonar.login="${{ secrets.SONAR_TOKEN }}" | |
working-directory: ./src | |
- uses: codecov/codecov-action@v3 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
directory: "src/" | |
files: "**/coverage.opencover.xml" | |
flags: unittests | |
name: codecov-umbrella | |
fail_ci_if_error: true | |
verbose: true | |
integration-test: | |
runs-on: ubuntu-latest | |
timeout-minutes: 30 | |
strategy: | |
matrix: | |
feature: [AcrApi, DicomDimseScp, DicomDimseScu, DicomWebExport, DicomWebStow, HealthLevel7, Fhir, RemoteAppExecutionPlugIn] | |
database: [ef, mongodb] | |
fail-fast: false | |
env: | |
TAG: ${{ needs.build.outputs.TAG }} | |
DOTNET_TEST: ${{ matrix.database }} | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- uses: actions/setup-dotnet@v3 | |
with: | |
dotnet-version: "8.0.x" | |
- name: Enable NuGet cache | |
uses: actions/cache@v3.3.2 | |
with: | |
path: ~/.nuget/packages | |
key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
restore-keys: | | |
${{ runner.os }}-nuget | |
- name: Restore dependencies | |
run: dotnet restore | |
working-directory: ./src | |
- name: Build Solution | |
run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
working-directory: ./src | |
- name: Integration Test | |
run: | | |
pushd tests/Integration.Test | |
./run.sh --feature ${{ matrix.feature }} | |
popd | |
- name: Upload Integration Test Results | |
uses: actions/upload-artifact@v3.1.2 | |
if: always() | |
with: | |
name: integration-${{ matrix.feature }} | |
path: | | |
${{ github.workspace }}/LivingDoc.html | |
${{ github.workspace }}/services.log | |
${{ github.workspace }}/run.log | |
retention-days: 30 | |
build: | |
runs-on: ${{ matrix.os }} | |
needs: [calc-version] | |
env: | |
NUGETVER: ${{ needs.calc-version.outputs.nuGetVersionV2 }} | |
SEMVER: ${{ needs.calc-version.outputs.semVer }} | |
PRERELEASELABEL: ${{ needs.calc-version.outputs.preReleaseLabel }} | |
MAJORMINORPATCH: ${{ needs.calc-version.outputs.majorMinorPatch }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest] | |
fail-fast: true | |
outputs: | |
TAG: ${{ steps.output.outputs.ubuntu-latest-TAG }} | |
permissions: | |
contents: write | |
packages: write | |
checks: write | |
security-events: write | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- uses: actions/setup-dotnet@v3 | |
with: | |
dotnet-version: "8.0.x" | |
- name: Enable NuGet cache | |
uses: actions/cache@v3.3.2 | |
with: | |
path: ~/.nuget/packages | |
key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
restore-keys: | | |
${{ runner.os }}-nuget | |
- name: Download AssemblyInfo.cs | |
id: download | |
uses: actions/download-artifact@v3 | |
with: | |
name: assembly-info | |
path: src/ | |
- name: Print AssemblyInfo | |
run: cat src/AssemblyInfo.cs | |
- name: Restore dependencies | |
run: dotnet restore | |
working-directory: ./src | |
- name: Build Solution | |
run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
working-directory: ./src | |
- name: Build CLI (linux-x64) | |
if: ${{ matrix.os == 'ubuntu-latest' }} | |
run: | | |
mkdir ~/release | |
dotnet publish --self-contained -c ${{ env.BUILD_CONFIG }} -r linux-x64 -o cli/ src/CLI/Monai.Deploy.InformaticsGateway.CLI.csproj | |
pushd cli && rm *.pdb | |
zip -r ~/release/mig-cli-$SEMVER-linux-x64.zip * | |
popd | |
ls -lR ~/release | |
- name: Build CLI (windows-x64) | |
if: ${{ matrix.os == 'windows-latest' }} | |
run: | | |
mkdir ~/release | |
dotnet publish --self-contained -c ${{ env.BUILD_CONFIG }} -r win-x64 -o cli/ src/CLI/Monai.Deploy.InformaticsGateway.CLI.csproj | |
pushd cli && rm *.pdb | |
Compress-Archive -Path * -DestinationPath ~/release/mig-cli-${{ env.SEMVER }}-win-x64.zip | |
popd | |
dir -r ~/release | |
- name: Upload CLI | |
uses: actions/upload-artifact@v3.1.2 | |
with: | |
name: artifacts | |
path: ~/release | |
retention-days: 7 | |
- name: Package API | |
if: ${{ (matrix.os == 'ubuntu-latest') }} | |
run: | | |
mkdir ~/nupkg | |
dotnet pack -c ${{ env.BUILD_CONFIG }} -o ~/nupkg -p:PackageVersion=${{ env.NUGETVER }} | |
ls -lR ~/nupkg | |
working-directory: ./src/Api | |
- name: Upload Nuget | |
if: ${{ matrix.os == 'ubuntu-latest' }} | |
uses: actions/upload-artifact@v3.1.2 | |
with: | |
name: nuget | |
path: ~/nupkg | |
retention-days: 30 | |
- name: Log in to the Container registry | |
uses: docker/login-action@v2.2.0 | |
if: ${{ (matrix.os == 'ubuntu-latest') }} | |
with: | |
registry: ${{ env.REGISTRY }} | |
username: ${{ github.actor }} | |
password: ${{ secrets.GITHUB_TOKEN }} | |
- name: Extract metadata (tags, labels) for Docker | |
id: meta | |
uses: docker/metadata-action@v4.6.0 | |
if: ${{ (matrix.os == 'ubuntu-latest') }} | |
with: | |
images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} | |
tags: | | |
type=raw,value=${{ env.SEMVER }} | |
type=raw,value=latest,enable=${{ endsWith(github.ref, github.event.repository.default_branch) }} | |
- name: Build and push Docker image | |
uses: docker/build-push-action@v4.1.1 | |
if: ${{ (matrix.os == 'ubuntu-latest') }} | |
with: | |
context: . | |
push: ${{ github.event_name != 'pull_request' }} | |
tags: ${{ steps.meta.outputs.tags }} | |
labels: ${{ steps.meta.outputs.labels }} | |
- name: Run Trivy vulnerability scanner | |
uses: aquasecurity/trivy-action@master | |
if: ${{ (matrix.os == 'ubuntu-latest') }} | |
with: | |
image-ref: ${{ fromJSON(steps.meta.outputs.json).tags[0] }} | |
format: 'table' | |
exit-code: '1' | |
ignore-unfixed: true | |
vuln-type: 'os,library' | |
severity: 'CRITICAL' | |
- name: Run dockle scan | |
id: dockle-scan | |
uses: goodwithtech/dockle-action@main | |
if: ${{ (matrix.os == 'ubuntu-latest') }} | |
with: | |
image: ${{ fromJSON(steps.meta.outputs.json).tags[0] }} | |
format: 'list' | |
exit-code: '1' | |
exit-level: 'warn' | |
- name: Anchore container scan | |
id: anchore-scan | |
uses: anchore/scan-action@v3.3.6 | |
if: ${{ (matrix.os == 'ubuntu-latest') }} | |
with: | |
image: ${{ fromJSON(steps.meta.outputs.json).tags[0] }} | |
fail-build: true | |
severity-cutoff: critical | |
- name: Upload scan SARIF report | |
uses: github/codeql-action/upload-sarif@v2 | |
if: ${{ (matrix.os == 'ubuntu-latest') }} | |
with: | |
sarif_file: ${{ steps.anchore-scan.outputs.sarif }} | |
token: ${{ secrets.GITHUB_TOKEN }} | |
- name: Output | |
id: output | |
if: ${{ (matrix.os == 'ubuntu-latest') }} | |
run: echo "::set-output name=${{ matrix.os }}-TAG::${{ fromJSON(steps.meta.outputs.json).labels['org.opencontainers.image.version'] }}" | |
docs: | |
runs-on: windows-latest | |
needs: [calc-version] | |
env: | |
SEMVER: ${{ needs.calc-version.outputs.semVer }} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- uses: actions/setup-dotnet@v3 | |
with: | |
dotnet-version: "8.0.x" | |
- name: Enable NuGet cache | |
uses: actions/cache@v3.3.2 | |
with: | |
path: ~/.nuget/packages | |
key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
restore-keys: | | |
${{ runner.os }}-nuget | |
- name: Setup DocFX | |
uses: crazy-max/ghaction-chocolatey@v3 | |
with: | |
args: install docfx | |
- name: Restore dependencies | |
run: dotnet restore | |
working-directory: ./src | |
- name: Build Solution | |
run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
working-directory: ./src | |
- name: Update docs version | |
run: | | |
sed -i -e "s,v0.0.0,v${{ env.SEMVER }},g" ./docs/docfx.json | |
sed -i -e "s,v0.0.0,v${{ env.SEMVER }},g" ./docs/index.md | |
- name: Build Docs | |
working-directory: docs | |
run: docfx docfx.json | |
continue-on-error: false | |
- name: Package docs | |
run: | | |
mkdir ~\release | |
Compress-Archive -Path docs\_site\* -DestinationPath ~\release\mig-docs-${{ env.SEMVER }}.zip | |
Get-ChildItem ~\release -Recurse | |
- name: Upload docs | |
uses: actions/upload-artifact@v3.1.2 | |
with: | |
name: artifacts | |
path: ~/release | |
retention-days: 7 | |
publish: | |
name: Publish to GitHub Packages | |
runs-on: ubuntu-latest | |
needs: [build, unit-test, integration-test] | |
if: ${{ ! ( github.event.inputs.nuget ) && ! ( contains(github.ref, 'refs/heads/main') ) }} | |
steps: | |
- uses: actions/download-artifact@v3 | |
id: download | |
- name: List artifacts | |
run: ls -ldR ${{steps.download.outputs.download-path}}/**/* | |
- name: Install grp | |
run: dotnet tool install gpr -g | |
- uses: actions/setup-dotnet@v3 | |
env: | |
NUGET_AUTH_TOKEN: ${{secrets.GITHUB_TOKEN}} | |
with: | |
dotnet-version: "8.0.x" | |
source-url: https://nuget.pkg.github.com/Project-MONAI/index.json | |
- name: Publish to GitHub | |
run: gpr push '${{ steps.download.outputs.download-path }}/nuget/*.nupkg' --repository ${{ github.repository }} -k ${{ secrets.GITHUB_TOKEN }} | |
release: | |
if: ${{ contains(github.ref, 'refs/heads/main') || contains(github.ref, 'refs/heads/develop') ||contains(github.head_ref, 'release/') || contains(github.head_ref, 'feature/') || contains(github.head_ref, 'develop') }} | |
runs-on: ubuntu-latest | |
needs: [calc-version, unit-test, docs, integration-test, analyze] | |
env: | |
SEMVER: ${{ needs.calc-version.outputs.semVer }} | |
PRERELEASELABEL: ${{ needs.calc-version.outputs.preReleaseLabel }} | |
MAJORMINORPATCH: ${{ needs.calc-version.outputs.majorMinorPatch }} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- uses: actions/download-artifact@v3 | |
id: download | |
- name: List artifacts | |
run: ls -ldR ${{steps.download.outputs.download-path}}/**/* | |
- name: Install grp | |
run: dotnet tool install gpr -g | |
- uses: actions/setup-dotnet@v3 | |
env: | |
NUGET_AUTH_TOKEN: ${{secrets.GITHUB_TOKEN}} | |
with: | |
dotnet-version: "8.0.x" | |
source-url: https://nuget.pkg.github.com/Project-MONAI/index.json | |
- name: Publish to GitHub | |
run: gpr push '${{ steps.download.outputs.download-path }}/nuget/*.nupkg' --repository ${{ github.repository }} -k ${{ secrets.GITHUB_TOKEN }} | |
- name: Publish to NuGet.org | |
run: dotnet nuget push ${{ steps.download.outputs.download-path }}/nuget/*.nupkg -s https://api.nuget.org/v3/index.json --api-key ${{ secrets.NUGET }} --skip-duplicate | |
- name: Extract owner and repo | |
uses: jungwinter/split@v2 | |
id: repo | |
with: | |
separator: "/" | |
msg: ${{ github.repository }} | |
- name: Install GitReleaseManager | |
uses: gittools/actions/gitreleasemanager/setup@v0.10.2 | |
with: | |
versionSpec: "0.13.x" | |
- name: Create release with GitReleaseManager | |
uses: gittools/actions/gitreleasemanager/create@v0.10.2 | |
with: | |
token: ${{ secrets.GITHUB_TOKEN }} | |
owner: ${{ steps.repo.outputs._0 }} | |
repository: ${{ steps.repo.outputs._1 }} | |
milestone: ${{ env.MAJORMINORPATCH }} | |
name: "Release v${{ env.MAJORMINORPATCH }}" | |
assets: | | |
artifacts/mig-cli-${{ env.SEMVER }}-linux-x64.zip | |
artifacts/mig-cli-${{ env.SEMVER }}-win-x64.zip | |
artifacts/mig-docs-${{ env.SEMVER }}.zip | |
- name: Publish release with GitReleaseManager | |
uses: gittools/actions/gitreleasemanager/publish@v0.10.2 | |
if: ${{ contains(github.ref, 'refs/heads/main') }} | |
with: | |
token: ${{ secrets.GITHUB_TOKEN }} | |
owner: ${{ steps.repo.outputs._0 }} | |
repository: ${{ steps.repo.outputs._1 }} | |
tagName: ${{ env.MAJORMINORPATCH }} | |
- name: Close release with GitReleaseManager | |
uses: gittools/actions/gitreleasemanager/close@v0.10.2 | |
if: ${{ contains(github.ref, 'refs/heads/main') }} | |
with: | |
token: ${{ secrets.GITHUB_TOKEN }} | |
owner: ${{ steps.repo.outputs._0 }} | |
repository: ${{ steps.repo.outputs._1 }} | |
milestone: ${{ env.MAJORMINORPATCH }} | |
- name: Unzip docs | |
if: ${{ contains(github.ref, 'refs/heads/main') }} | |
run: | | |
mkdir userguide | |
unzip artifacts/mig-docs-${{ env.SEMVER }}.zip -d userguide/ | |
ls -lR userguide/ | |
- name: Deploy Docs | |
uses: peaceiris/actions-gh-pages@v3 | |
if: ${{ contains(github.ref, 'refs/heads/main') }} | |
with: | |
github_token: ${{ secrets.GITHUB_TOKEN }} | |
publish_dir: userguide/ | |
publish_branch: docs |